BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921719.2.1
(779 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ463481.1|BQ463481 HI05G14r HI Hordeum vulgare subsp. v... 367 e-100
gb|CA017843.1|CA017843 HV06H11r HV Hordeum vulgare subsp. v... 367 e-100
gb|CA026803.1|CA026803 HZ57A06r HZ Hordeum vulgare subsp. v... 367 e-100
gb|BQ760103.1|BQ760103 EBpi07_SQ003_P02_R pistil, 12 DPA, n... 351 2e-095
gb|CV060542.1|CV060542 BNEL59c5 Barley EST endosperm librar... 349 9e-095
gb|CV053867.1|CV053867 BNEL104a7 Barley EST endosperm libra... 343 5e-093
gb|CV054722.1|CV054722 BNEL112e9 Barley EST endosperm libra... 343 5e-093
gb|BM377309.2|BM377309 EBem05_SQ004_L24_R embryo, 14 DPA, n... 303 5e-081
gb|BQ756119.1|BQ756119 EBem05_SQ001_N02_R embryo, 14 DPA, n... 299 7e-080
gb|CK124632.1|CK124632 BES1824109n06 BES1824 Hordeum vulgar... 186 7e-046
gb|BQ660776.1|BQ660776 HI05G14u HI Hordeum vulgare subsp. v... 176 7e-043
gb|AJ461621.1|AJ461621 AJ461621 S00002 Hordeum vulgare subs... 48 4e-004
gb|AL503587.1|AL503587 AL503587 Hordeum vulgare Barke roots... 42 0.027
gb|BG342909.2|BG342909 HVSMEg0001D15f Hordeum vulgare pre-a... 42 0.027
gb|BU998218.1|BU998218 HI10F22r HI Hordeum vulgare subsp. v... 42 0.027
gb|CA013294.1|CA013294 HT07P11r HT Hordeum vulgare subsp. v... 42 0.027
gb|BM370940.2|BM370940 EBro04_SQ002_P13_R root, 3 week, sal... 40 0.11
gb|BG365091.1|BG365091 HVSMEi0001D23f Hordeum vulgare 20 DA... 38 0.42
gb|BM098977.2|BM098977 EBpi05_SQ002_J16_R pistil, 8 DPA, no... 38 0.42
gb|BU967175.1|BU967175 HB03I02r BC Hordeum vulgare subsp. v... 38 0.42
gb|BU998917.1|BU998917 HI12J01r HI Hordeum vulgare subsp. v... 38 0.42
gb|CA023148.1|CA023148 HZ45F23r HZ Hordeum vulgare subsp. v... 38 0.42
>gb|BQ463481.1|BQ463481 HI05G14r HI Hordeum vulgare subsp. vulgare cDNA clone HI05G14
5-PRIME, mRNA sequence
Length = 454
Score = 367 bits (185), Expect = e-100
Identities = 236/253 (93%)
Strand = Plus / Plus
Query: 90 tggtggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtaca 149
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 111 tggtggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtaca 170
Query: 150 ggcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccg 209
||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||| |||
Sbjct: 171 ggcacgtggtcctcccgccggaagtcgccaagctcctccccaagaaccgcctgctcgccg 230
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||||||||||||| | || ||||||||||||||||||||||||||||| || |||
Sbjct: 231 agaacgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactatgccgtcc 290
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 291 accggccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcagg 350
Query: 330 aggcggctgccgc 342
| ||||| |||||
Sbjct: 351 acgcggccgccgc 363
>gb|CA017843.1|CA017843 HV06H11r HV Hordeum vulgare subsp. vulgare cDNA clone HV06H11
5-PRIME, mRNA sequence
Length = 500
Score = 367 bits (185), Expect = e-100
Identities = 236/253 (93%)
Strand = Plus / Plus
Query: 90 tggtggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtaca 149
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 106 tggtggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtaca 165
Query: 150 ggcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccg 209
||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||| |||
Sbjct: 166 ggcacgtggtcctcccgccggaagtcgccaagctcctccccaagaaccgcctgctcgccg 225
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||||||||||||| | || ||||||||||||||||||||||||||||| || |||
Sbjct: 226 agaacgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactatgccgtcc 285
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 286 accggccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcagg 345
Query: 330 aggcggctgccgc 342
| ||||| |||||
Sbjct: 346 acgcggccgccgc 358
>gb|CA026803.1|CA026803 HZ57A06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57A06
5-PRIME, mRNA sequence
Length = 435
Score = 367 bits (185), Expect = e-100
Identities = 236/253 (93%)
Strand = Plus / Plus
Query: 90 tggtggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtaca 149
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 90 tggtggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtaca 149
Query: 150 ggcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccg 209
||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||| |||
Sbjct: 150 ggcacgtggtcctcccgccggaagtcgccaagctcctccccaagaaccgcctgctcgccg 209
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||||||||||||| | || ||||||||||||||||||||||||||||| || |||
Sbjct: 210 agaacgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactatgccgtcc 269
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 270 accggccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcagg 329
Query: 330 aggcggctgccgc 342
| ||||| |||||
Sbjct: 330 acgcggccgccgc 342
>gb|BQ760103.1|BQ760103 EBpi07_SQ003_P02_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ003_P02 5', mRNA sequence
Length = 349
Score = 351 bits (177), Expect = 2e-095
Identities = 225/241 (93%)
Strand = Plus / Plus
Query: 90 tggtggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtaca 149
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 108 tggtggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtaca 167
Query: 150 ggcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccg 209
||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||| |||
Sbjct: 168 ggcacgtggtcctcccgccggaagtcgccaagctcctccccaagaaccgcctgctcgccg 227
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||||||||||||| | || |||||||| |||||||||||||||||||| || |||
Sbjct: 228 agaacgagtggcgcgcgctgggcgtgcagcaaagccgcgggtgggtgcactatgccgtcc 287
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 288 accggccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcagg 347
Query: 330 a 330
|
Sbjct: 348 a 348
>gb|CV060542.1|CV060542 BNEL59c5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL59c5 5' similar to putative
cyclin-dependent kinase regulatory subunit, mRNA
sequence
Length = 375
Score = 349 bits (176), Expect = 9e-095
Identities = 224/240 (93%)
Strand = Plus / Plus
Query: 91 ggtggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacag 150
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 135 ggtggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacag 194
Query: 151 gcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccga 210
|||||| ||||||||||| || ||||||||||||||||||||||||||||| ||| ||||
Sbjct: 195 gcacgtggtcctcccgccggaagtcgccaagctcctccccaagaaccgcctgctcgccga 254
Query: 211 gaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcca 270
|||||||||||||||| | || |||||||| |||||||||||||||||||| || ||||
Sbjct: 255 gaacgagtggcgcgcgctgggcgtgcagcaaagccgcgggtgggtgcactatgccgtcca 314
Query: 271 ccgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagga 330
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 315 ccggccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcagga 374
>gb|CV053867.1|CV053867 BNEL104a7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL104a7 5' similar to putative
cyclin-dependent kinase regulatory subunit, mRNA
sequence
Length = 375
Score = 343 bits (173), Expect = 5e-093
Identities = 221/237 (93%)
Strand = Plus / Plus
Query: 94 ggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggca 153
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 138 ggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacaggca 197
Query: 154 cgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaa 213
||| ||||||||||| || ||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 198 cgtggtcctcccgccggaagtcgccaagctcctccccaagaaccgcctgctcgccgagaa 257
Query: 214 cgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccg 273
||||||||||||| | || ||||||||||||||||||||||||||||| || |||||||
Sbjct: 258 cgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactatgccgtccaccg 317
Query: 274 cccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagga 330
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 318 gccggagccgcacatcatgctgttccgccggccgctcaactaccagcagcagcagga 374
>gb|CV054722.1|CV054722 BNEL112e9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL112e9 5' similar to putative
cyclin-dependent kinase regulatory subunit, mRNA
sequence
Length = 376
Score = 343 bits (173), Expect = 5e-093
Identities = 225/241 (93%), Gaps = 1/241 (0%)
Strand = Plus / Plus
Query: 91 ggtggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacag 150
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 135 ggtggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtacag 194
Query: 151 gcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccga 210
|||||| ||||||||||| || ||||||||||||||||||||||||||||| ||| ||||
Sbjct: 195 gcacgtggtcctcccgccggaagtcgccaagctcctccccaagaaccgcctgctcgccga 254
Query: 211 gaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcca 270
|||||||||||||||| | || ||||||||||||||||||||||||||||| || ||||
Sbjct: 255 gaacgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactatgccgtcca 314
Query: 271 cc-gcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
|| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 315 ccgggccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcagg 374
Query: 330 a 330
|
Sbjct: 375 a 375
>gb|BM377309.2|BM377309 EBem05_SQ004_L24_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ004_L24 5', mRNA sequence
Length = 355
Score = 303 bits (153), Expect = 5e-081
Identities = 219/241 (90%)
Strand = Plus / Plus
Query: 90 tggtggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtaca 149
||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 114 tggtggacatgggccatatccagtactccgagaagtacttcgacgacaccttcgagtaca 173
Query: 150 ggcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccg 209
||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||| |||
Sbjct: 174 ggcacgtggtcctcccgccggaagtcgccaagctcctccccaagaaccgcctgctcgccg 233
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||||||||||||| | || ||||| || | |||||||||||||||||| || ||
Sbjct: 234 agaacgagtggcgcgcgctgggcgtgcaacatatccgcgggtgggtgcactatgccggcc 293
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
|||| |||||||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct: 294 accggccggagccgcacatgatgctggtccgccgcccgctcaactaccagcagcagcagg 353
Query: 330 a 330
|
Sbjct: 354 a 354
>gb|BQ756119.1|BQ756119 EBem05_SQ001_N02_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ001_N02 5', mRNA sequence
Length = 219
Score = 299 bits (151), Expect = 7e-080
Identities = 201/218 (92%)
Strand = Plus / Plus
Query: 113 tactccgagaagtacttcgacgacacctacgagtacaggcacgtcgtcctcccgcccgag 172
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||
Sbjct: 1 tactccgagaagtacttcgacgacaccttcgagtacaggcacgtggtcctcccgccggaa 60
Query: 173 gtcgccaagctcctccccaagaaccgcctcctctccgagaacgagtggcgcgcgatcgga 232
||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| | ||
Sbjct: 61 gtcgccaagctcctccccaagaaccgcctgctcgccgagaacaagtggcgcgcgctgggc 120
Query: 233 gtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccggagccgcacatcatg 292
||||| || |||||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct: 121 gtgcancaaagccgcgggtgggtgcactatgccgtccaccggccggagccgcacatcatg 180
Query: 293 ctgttccgccgcccgatcaactaccagcagcagcagga 330
||||||||||||||| ||||||||||||||||||||||
Sbjct: 181 ctgttccgccgcccgctcaactaccagcagcagcagga 218
>gb|CK124632.1|CK124632 BES1824109n06 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010N069 5-PRIME, mRNA sequence
Length = 290
Score = 186 bits (94), Expect = 7e-046
Identities = 117/125 (93%)
Strand = Plus / Plus
Query: 90 tggtggacatgggtcagatccagtactccgagaagtacttcgacgacacctacgagtaca 149
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 118 tggtggacatgggccagatccagtactccgagaagtacttcgacgacaccttcgagtaca 177
Query: 150 ggcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccg 209
||||||| ||||||||||| || |||||||||||||||||||| |||||||| ||| |||
Sbjct: 178 ggcacgtggtcctcccgccggaagtcgccaagctcctccccaanaaccgcctgctcgccg 237
Query: 210 agaac 214
|||||
Sbjct: 238 agaac 242
>gb|BQ660776.1|BQ660776 HI05G14u HI Hordeum vulgare subsp. vulgare cDNA clone HI05G14
3-PRIME, mRNA sequence
Length = 438
Score = 176 bits (89), Expect = 7e-043
Identities = 119/129 (92%)
Strand = Plus / Minus
Query: 214 cgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccg 273
||||||||||||| | || ||||||||||||||||||||||||||||| || |||||||
Sbjct: 438 cgagtggcgcgcgctgggcgtgcagcagagccgcgggtgggtgcactatgccgtccaccg 379
Query: 274 cccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggc 333
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 378 gccggagccgcacatcatgctgttccgccgcccgctcaactaccagcagcagcaggacgc 319
Query: 334 ggctgccgc 342
||| |||||
Sbjct: 318 ggccgccgc 310
>gb|AJ461621.1|AJ461621 AJ461621 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200040C04F1, mRNA sequence
Length = 300
Score = 48.1 bits (24), Expect = 4e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 303 gcccgatcaactaccagcagcagcaggaggcggctgccgc 342
||||| ||||||||||||||||||| || ||||| |||||
Sbjct: 161 gcccgctcaactaccagcagcagcaagacgcggccgccgc 200
>gb|AL503587.1|AL503587 AL503587 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02L07T 5', mRNA sequence
Length = 700
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 315 accagcagcagcaggaggcggctgccgcg 343
|||||||||||||| ||||||| ||||||
Sbjct: 193 accagcagcagcagcaggcggccgccgcg 221
>gb|BG342909.2|BG342909 HVSMEg0001D15f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001D15f, mRNA sequence
Length = 839
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 315 accagcagcagcaggaggcggctgccgcg 343
|||||||||||||| ||||||| ||||||
Sbjct: 245 accagcagcagcagcaggcggccgccgcg 273
>gb|BU998218.1|BU998218 HI10F22r HI Hordeum vulgare subsp. vulgare cDNA clone HI10F22
5-PRIME, mRNA sequence
Length = 632
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 315 accagcagcagcaggaggcggctgccgcg 343
|||||||||||||| ||||||| ||||||
Sbjct: 124 accagcagcagcagcaggcggccgccgcg 152
>gb|CA013294.1|CA013294 HT07P11r HT Hordeum vulgare subsp. vulgare cDNA clone HT07P11
5-PRIME, mRNA sequence
Length = 645
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 315 accagcagcagcaggaggcggctgccgcg 343
|||||||||||||| ||||||| ||||||
Sbjct: 188 accagcagcagcagcaggcggccgccgcg 216
>gb|BM370940.2|BM370940 EBro04_SQ002_P13_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ002_P13 5', mRNA sequence
Length = 310
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 310 caactaccagcagcagcagg 329
||||||||||||||||||||
Sbjct: 181 caactaccagcagcagcagg 200
>gb|BG365091.1|BG365091 HVSMEi0001D23f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0001D23f, mRNA sequence
Length = 815
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 407 ccccctttccatctctaaa 425
|||||||||||||||||||
Sbjct: 401 ccccctttccatctctaaa 383
>gb|BM098977.2|BM098977 EBpi05_SQ002_J16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ002_J16 5', mRNA sequence
Length = 487
Score = 38.2 bits (19), Expect = 0.42
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 317 cagcagcagcaggaggcggctgc 339
||||||||| |||||||||||||
Sbjct: 135 cagcagcaggaggaggcggctgc 157
>gb|BU967175.1|BU967175 HB03I02r BC Hordeum vulgare subsp. vulgare cDNA clone HB03I02
5-PRIME, mRNA sequence
Length = 581
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 176 gccaagctcctccccaaga 194
|||||||||||||||||||
Sbjct: 526 gccaagctcctccccaaga 544
>gb|BU998917.1|BU998917 HI12J01r HI Hordeum vulgare subsp. vulgare cDNA clone HI12J01
5-PRIME, mRNA sequence
Length = 599
Score = 38.2 bits (19), Expect = 0.42
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 317 cagcagcagcaggaggcggctgc 339
||||||||| |||||||||||||
Sbjct: 138 cagcagcaggaggaggcggctgc 160
>gb|CA023148.1|CA023148 HZ45F23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45F23
5-PRIME, mRNA sequence
Length = 217
Score = 38.2 bits (19), Expect = 0.42
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 362 gcccccggtggccagggcggcga 384
||||||||||||||| |||||||
Sbjct: 30 gcccccggtggccagcgcggcga 8
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 102,241
Number of Sequences: 312970
Number of extensions: 102241
Number of successful extensions: 35389
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35349
Number of HSP's gapped (non-prelim): 35
length of query: 779
length of database: 175,134,539
effective HSP length: 19
effective length of query: 760
effective length of database: 169,188,109
effective search space: 128582962840
effective search space used: 128582962840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)