BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921718.2.1
(649 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV059284.1|CV059284 BNEL46d8 Barley EST endosperm librar... 371 e-101
gb|CA031834.1|CA031834 HX11E06r HX Hordeum vulgare subsp. v... 331 2e-089
gb|CV062825.1|CV062825 BNEL83e1 Barley EST endosperm librar... 315 1e-084
gb|CV055547.1|CV055547 BNEL120h12 Barley EST endosperm libr... 313 4e-084
gb|BQ657408.1|BQ657408 HA08H22u HA Hordeum vulgare subsp. v... 266 8e-070
gb|CV059060.1|CV059060 BNEL43h6 Barley EST endosperm librar... 264 3e-069
gb|CV056920.1|CV056920 BNEL22a9 Barley EST endosperm librar... 246 8e-064
gb|BU985075.1|BU985075 HF06A23r HF Hordeum vulgare subsp. v... 238 2e-061
gb|BU972274.1|BU972274 HB21C22r BC Hordeum vulgare subsp. v... 159 1e-037
gb|CV055258.1|CV055258 BNEL118f1 Barley EST endosperm libra... 157 5e-037
gb|AV925892.1|AV925892 AV925892 K. Sato unpublished cDNA li... 105 2e-021
gb|AV928662.1|AV928662 AV928662 K. Sato unpublished cDNA li... 105 2e-021
gb|AV935887.1|AV935887 AV935887 K. Sato unpublished cDNA li... 105 2e-021
gb|BU976140.1|BU976140 HA03D09u HA Hordeum vulgare subsp. v... 105 2e-021
gb|CK122583.1|CK122583 BES1824104h21 BES1824 Hordeum vulgar... 105 2e-021
gb|CV062563.1|CV062563 BNEL80d8 Barley EST endosperm librar... 103 7e-021
gb|BI777049.2|BI777049 EBpi03_SQ001_M01_R pistil, 4 DPA, no... 96 2e-018
gb|BQ760241.1|BQ760241 EBpi07_SQ003_K16_R pistil, 12 DPA, n... 88 4e-016
gb|BM371651.1|BM371651 EBma08_SQ003_I01_R maternal, 28 DPA,... 42 0.022
gb|AL510997.1|AL510997 AL510997 Hordeum vulgare Barke devel... 40 0.088
gb|BJ469718.1|BJ469718 BJ469718 K. Sato unpublished cDNA li... 40 0.088
gb|BJ471584.1|BJ471584 BJ471584 K. Sato unpublished cDNA li... 40 0.088
gb|BJ472259.1|BJ472259 BJ472259 K. Sato unpublished cDNA li... 40 0.088
gb|CB858478.1|CB858478 HI07C19w HI Hordeum vulgare subsp. v... 40 0.088
gb|BE420941.1|BE420941 HWM004.B06 ITEC HWM Barley Leaf Libr... 38 0.35
gb|BE421991.1|BE421991 HWM018cC.10r ITEC HWM Barley Leaf Li... 38 0.35
gb|AL506990.1|AL506990 AL506990 Hordeum vulgare Barke devel... 38 0.35
gb|BG310278.1|BG310278 HVSMEc0017D21f Hordeum vulgare seedl... 38 0.35
gb|AV932153.1|AV932153 AV932153 K. Sato unpublished cDNA li... 38 0.35
gb|AV932211.1|AV932211 AV932211 K. Sato unpublished cDNA li... 38 0.35
gb|BM817250.1|BM817250 HC110G04_T3.ab1 HC Hordeum vulgare s... 38 0.35
gb|BJ473219.1|BJ473219 BJ473219 K. Sato unpublished cDNA li... 38 0.35
gb|BQ763093.1|BQ763093 EBro02_SQ007_M02_R root, 3 week, hyd... 38 0.35
gb|BU967154.1|BU967154 HB03H04r BC Hordeum vulgare subsp. v... 38 0.35
gb|CA009102.1|CA009102 HU13C22r HU Hordeum vulgare subsp. v... 38 0.35
gb|CA021183.1|CA021183 HZ39F20r HZ Hordeum vulgare subsp. v... 38 0.35
>gb|CV059284.1|CV059284 BNEL46d8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL46d8 5' similar to COG1208, GCD1,
Nucleoside-diphosphate-sugar pyrophosphorylase involved
in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits, mRNA
sequence
Length = 637
Score = 371 bits (187), Expect = e-101
Identities = 305/345 (88%)
Strand = Plus / Plus
Query: 29 ggcgcgcacgtcctgggcaacgtgctggtgcacgagaccgcggtcatcggggacggctgc 88
||||||||||||||| ||||||||||||| |||||||| ||| |||||||| || |||
Sbjct: 281 ggcgcgcacgtcctgngcaacgtgctggtccacgagacggcgacgatcggggaagggtgc 340
Query: 89 ctcatcgggcccgacgtcgcggtcgggccaggctgcgtggtggaggccggggtgcgcctg 148
|| |||||||| ||||| || ||||| || | ||||||||||||||||| ||||| |||
Sbjct: 341 ctgatcgggccggacgtggccgtcggcccccgttgcgtggtggaggccggngtgcggctg 400
Query: 149 tcccgctgcaccgtcatgcgcgccgcgcgcgtcaagcagcacgcctgcgtctccagcagc 208
|| | |||||||| ||||| | ||||||||| ||| ||||||| ||| ||||| |||||
Sbjct: 401 tcgaggtgcaccgtgatgcgtggcgcgcgcgtgaagaagcacgcgtgcatctccggcagc 460
Query: 209 atcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgaccatcctc 268
||| | || |||||||| || || ||||||||||||||||| ||||||||||||||||||
Sbjct: 461 atcgtggggtggcactcgacggtgggcaagtgggcgcgcgtggagaacatgaccatcctc 520
Query: 269 ggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctcccgcac 328
||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 521 ggcgaggacgtgcacgtctgcgacgaggtgtacagcaacggcggcgtcgtgctcccgcac 580
Query: 329 aaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 581 aaggagatcaagtccagcatcctcaagcccgagatcgtcatgtga 625
>gb|CA031834.1|CA031834 HX11E06r HX Hordeum vulgare subsp. vulgare cDNA clone HX11E06
5-PRIME, mRNA sequence
Length = 620
Score = 331 bits (167), Expect = 2e-089
Identities = 275/311 (88%)
Strand = Plus / Plus
Query: 29 ggcgcgcacgtcctgggcaacgtgctggtgcacgagaccgcggtcatcggggacggctgc 88
||||||||||||||||||||||||||||| |||||||| ||| |||||||| || |||
Sbjct: 309 ggcgcgcacgtcctgggcaacgtgctggtccacgagacggcgacgatcggggaagggtgc 368
Query: 89 ctcatcgggcccgacgtcgcggtcgggccaggctgcgtggtggaggccggggtgcgcctg 148
|| |||||||| ||||| || ||||| || || ||||||||||||||||||||||| |||
Sbjct: 369 ctgatcgggccggacgtggccgtcggccccgggtgcgtggtggaggccggggtgcggctg 428
Query: 149 tcccgctgcaccgtcatgcgcgccgcgcgcgtcaagcagcacgcctgcgtctccagcagc 208
|| | |||||||| ||||| | ||||||||| ||| ||||||| ||| ||||| |||||
Sbjct: 429 tcgaggtgcaccgtgatgcgtggcgcgcgcgtgaagaagcacgcgtgcatctccggcagc 488
Query: 209 atcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgaccatcctc 268
||| | || |||||||| || || ||||||||||||||||| ||||||||||||||||||
Sbjct: 489 atcgtggggtggcactcgacggtgggcaagtgggcgcgcgtggagaacatgaccatcctc 548
Query: 269 ggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctcccgcac 328
||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 549 ggcgaggacgtgcacgtctgcgacgaggtgtacagcaacggcggcgtcgtgctcccgcac 608
Query: 329 aaggagatcaa 339
|||||||||||
Sbjct: 609 aaggagatcaa 619
>gb|CV062825.1|CV062825 BNEL83e1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL83e1 5' similar to GDP-mannose
pyrophosphorylase, mRNA sequence
Length = 595
Score = 315 bits (159), Expect = 1e-084
Identities = 255/288 (88%)
Strand = Plus / Minus
Query: 86 tgcctcatcgggcccgacgtcgcggtcgggccaggctgcgtggtggaggccggggtgcgc 145
||||| |||||||| ||||| || ||||| | || ||||||||| |||||||||| ||
Sbjct: 587 tgcctgatcgggccggacgtggccgtcggcaccgggtgcgtggtgnaggccggggtncgg 528
Query: 146 ctgtcccgctgcaccgtcatgcgcgccgcgcgcgtcaagcagcacgcctgcgtctccagc 205
||||| | |||||||| ||||| | ||||||||| ||| ||||||| ||| ||||| ||
Sbjct: 527 ctgtcnaggtgcaccgtgatgcgtggcgcgcgcgtgaagaagcacgcgtgcatctccggc 468
Query: 206 agcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgaccatc 265
|||||| | || |||||||| || || ||||||||||||||||| |||||||||||||||
Sbjct: 467 agcatcgtggggtggcactcgacggtgggcaagtgggcgcgcgtggagaacatgaccatc 408
Query: 266 ctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctcccg 325
|||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 407 ctcggcgaggacgtgcacgtctgcgacgaggtgtacagcaacggcggcgtcgtgctcccg 348
Query: 326 cacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 347 cacaaggagatcaagtccagcatcctcaagcccgagatcgtcatgtga 300
>gb|CV055547.1|CV055547 BNEL120h12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL120h12 5' similar to GDP-mannose
pyrophosphorylase, mRNA sequence
Length = 730
Score = 313 bits (158), Expect = 4e-084
Identities = 301/347 (86%), Gaps = 2/347 (0%)
Strand = Plus / Minus
Query: 29 ggcgcgcacgtcctgggcaa-cgtgctggtgcacgagaccgcggtcatcgggg-acggct 86
|||||||||||| ||||||| |||| ||| |||||||| ||| ||||||| | || |
Sbjct: 655 ggcgcgcacgtcttgggcaaacgtgtgggttcacgagacggcgacgatcggggnaagggt 596
Query: 87 gcctcatcgggcccgacgtcgcggtcgggccaggctgcgtggtggaggccggggtgcgcc 146
|||| ||||| || |||| || ||||| || || ||||||||| || ||||||| ||||
Sbjct: 595 gcctgatcggnccgnacgtggccgtcggccccgggtgcgtggtgaagcccggggtncgcc 536
Query: 147 tgtcccgctgcaccgtcatgcgcgccgcgcgcgtcaagcagcacgcctgcgtctccagca 206
|||| | |||||||| ||||| | ||||||||| ||| ||||||| ||| ||||| |||
Sbjct: 535 tgtcaaggtgcaccgtaatgcgtggcgcgcgcgtgaagaagcacgcgtgcatctccggca 476
Query: 207 gcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgaccatcc 266
||||| | || |||||||| || || ||||||||||||||||| ||||||||||||||||
Sbjct: 475 gcatcgtggggtggcactcgacggtgggcaagtgggcgcgcgtggagaacatgaccatcc 416
Query: 267 tcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctcccgc 326
||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 415 tcggcgaggacgtgcacgtctgcgacgaggtgtacagcaacggcggcgtcgtgctcccgc 356
Query: 327 acaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 355 acaaggagatcaagtccagcatcctcaagcccgagatcgtcatgtga 309
>gb|BQ657408.1|BQ657408 HA08H22u HA Hordeum vulgare subsp. vulgare cDNA clone HA08H22
3-PRIME, mRNA sequence
Length = 497
Score = 266 bits (134), Expect = 8e-070
Identities = 185/202 (91%)
Strand = Plus / Minus
Query: 172 cgcgcgcgtcaagcagcacgcctgcgtctccagcagcatcatcggctggcactccaccgt 231
||||||||| ||| ||||||| ||| ||||| |||||||| | || |||||||| || ||
Sbjct: 491 cgcgcgcgtgaagaagcacgcgtgcatctccggcagcatcgtggggtggcactcgacggt 432
Query: 232 cggcaagtgggcgcgcgtcgagaacatgaccatcctcggcgaggacgtccacgtctgcga 291
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 431 gggcaagtgggcgcgcgtggagaacatgaccatcctcggcgaggacgtgcacgtctgcga 372
Query: 292 cgagatctacagcaacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcct 351
|||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 371 cgaggtgtacagcaacggcggcgtcgtgctcccgcacaaggagatcaagtccagcatcct 312
Query: 352 caagcccgagatcgtcatgtga 373
|||||||||||| |||||||||
Sbjct: 311 caagcccgagattgtcatgtga 290
>gb|CV059060.1|CV059060 BNEL43h6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL43h6 5' similar to GDP-mannose
pyrophosphorylase, mRNA sequence
Length = 500
Score = 264 bits (133), Expect = 3e-069
Identities = 181/197 (91%)
Strand = Plus / Minus
Query: 177 gcgtcaagcagcacgcctgcgtctccagcagcatcatcggctggcactccaccgtcggca 236
|||| ||| ||||||| ||| ||||| |||||||| | || |||||||| || || ||||
Sbjct: 500 gcgtgaagaagcacgcgtgcatctccggcagcatcgtggggtggcactcgacggtgggca 441
Query: 237 agtgggcgcgcgtcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgaga 296
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 440 agtgggcgcgcgtggagaacatgaccatcctcggcgaggacgtgcacgtctgcgacgagg 381
Query: 297 tctacagcaacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagc 356
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 380 tgtacagcaacggcggcgtcgtgctcccgcacaaggagatcaagtccagcatcctcaagc 321
Query: 357 ccgagatcgtcatgtga 373
|||||||||||||||||
Sbjct: 320 ccgagatcgtcatgtga 304
>gb|CV056920.1|CV056920 BNEL22a9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL22a9 5' similar to GDP-D-mannose
pyrophosphorylase, mRNA sequence
Length = 555
Score = 246 bits (124), Expect = 8e-064
Identities = 148/156 (94%)
Strand = Plus / Minus
Query: 218 tggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgaccatcctcggcgaggac 277
|||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 464 tggcactcgacggtgggcaagtgggcgcgcgtggagaacatgaccatcctcggcgaggac 405
Query: 278 gtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctcccgcacaaggagatc 337
|| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gtgcacgtctgcgacgaggtgtacagcaacggcggcgtcgtgctcccgcacaaggagatc 345
Query: 338 aaatccagcatcctcaagcccgagatcgtcatgtga 373
|| |||||||||||||||||||||||||||||||||
Sbjct: 344 aagtccagcatcctcaagcccgagatcgtcatgtga 309
>gb|BU985075.1|BU985075 HF06A23r HF Hordeum vulgare subsp. vulgare cDNA clone HF06A23
5-PRIME, mRNA sequence
Length = 455
Score = 238 bits (120), Expect = 2e-061
Identities = 147/156 (94%)
Strand = Plus / Minus
Query: 218 tggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgaccatcctcggcgaggac 277
|||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 443 tggcactcgacggtgggcaagtgggcgcgcgtggagaacatgaccatcctcggcgaggac 384
Query: 278 gtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctcccgcacaaggagatc 337
|| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtgcacgtctgcgacgaggtgtacagcaacggcggcgtcgtgctcccgcacaaggagatc 324
Query: 338 aaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||||||||||||||||||||| |||||||||
Sbjct: 323 aagtccagcatcctcaagcccgagattgtcatgtga 288
>gb|BU972274.1|BU972274 HB21C22r BC Hordeum vulgare subsp. vulgare cDNA clone HB21C22
5-PRIME, mRNA sequence
Length = 433
Score = 159 bits (80), Expect = 1e-037
Identities = 178/211 (84%)
Strand = Plus / Plus
Query: 29 ggcgcgcacgtcctgggcaacgtgctggtgcacgagaccgcggtcatcggggacggctgc 88
||||||||||||||||||||||||||||| |||||||| ||| |||||||| || |||
Sbjct: 223 ggcgcgcacgtcctgggcaacgtgctggtccacgagacggcgacgatcggggaagggtgc 282
Query: 89 ctcatcgggcccgacgtcgcggtcgggccaggctgcgtggtggaggccggggtgcgcctg 148
|| |||||||| ||||| || ||||| || || ||||||||||||||||||||||| |||
Sbjct: 283 ctgatcgggccggacgtggccgtcggccccgggtgcgtggtggaggccggggtgcggctg 342
Query: 149 tcccgctgcaccgtcatgcgcgccgcgcgcgtcaagcagcacgcctgcgtctccagcagc 208
|| | |||||||| ||||| | ||||||||| ||| ||||||| ||| ||||| |||||
Sbjct: 343 tcgaggtgcaccgtgatgcgtggcgcgcgcgtgaagaagcacgcgtgcatctccggcagc 402
Query: 209 atcatcggctggcactccaccgtcggcaagt 239
||| | | |||||||| || || |||||||
Sbjct: 403 atcgtggngtggcactcgacggtgggcaagt 433
>gb|CV055258.1|CV055258 BNEL118f1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL118f1 5' similar to COG1208,
GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase
involved in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits, mRNA
sequence
Length = 778
Score = 157 bits (79), Expect = 5e-037
Identities = 124/139 (89%)
Strand = Plus / Minus
Query: 235 caagtgggcgcgcgtcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacga 294
||||||||||||||| |||||||||||||||| ||||||||||| ||||||| ||||||
Sbjct: 458 caagtgggcgcgcgtggagaacatgaccatccagggcgaggacgtgcacgtcttcgacga 399
Query: 295 gatctacagcaacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaa 354
| | |||| || || |||||| | ||||||||||||||||||| | ||||||||||||||
Sbjct: 398 ggtgtacatcatcgccggcgtggggctcccgcacaaggagatcgagtccagcatcctcaa 339
Query: 355 gcccgagatcgtcatgtga 373
|||||| ||||||||||||
Sbjct: 338 gcccgaaatcgtcatgtga 320
>gb|AV925892.1|AV925892 AV925892 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdd19 5', mRNA sequence
Length = 612
Score = 105 bits (53), Expect = 2e-021
Identities = 140/169 (82%)
Strand = Plus / Plus
Query: 205 cagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgaccat 264
|||||||||||||||||| || || ||||| | ||||| ||| | ||||| ||||| ||
Sbjct: 408 cagcatcatcggctggcattcgacggtcgggcaatgggcacgcatagagaatatgactat 467
Query: 265 cctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctccc 324
||| || || || || || || | |||||| |||||||||||||||| || || || ||
Sbjct: 468 cctgggagaagatgtacatgttggtgacgaggtctacagcaacggcggtgttgttctgcc 527
Query: 325 gcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||||||| || |||||||| ||||| |||||||||||||||
Sbjct: 528 gcacaaggagatcaagtcaagcatccttaagcctgagatcgtcatgtga 576
>gb|AV928662.1|AV928662 AV928662 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd15d19 3', mRNA sequence
Length = 673
Score = 105 bits (53), Expect = 2e-021
Identities = 140/169 (82%)
Strand = Plus / Minus
Query: 205 cagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgaccat 264
|||||||||||||||||| || || ||||| | ||||| ||| | ||||| ||||| ||
Sbjct: 275 cagcatcatcggctggcattcgacggtcgggcaatgggcacgcatagagaatatgactat 216
Query: 265 cctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctccc 324
||| || || || || || || | |||||| |||||||||||||||| || || || ||
Sbjct: 215 cctgggagaagatgtacatgttggtgacgaggtctacagcaacggcggtgttgttctgcc 156
Query: 325 gcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||||||| || |||||||| ||||| |||||||||||||||
Sbjct: 155 gcacaaggagatcaagtcaagcatccttaagcctgagatcgtcatgtga 107
>gb|AV935887.1|AV935887 AV935887 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6n22 3', mRNA sequence
Length = 651
Score = 105 bits (53), Expect = 2e-021
Identities = 140/169 (82%)
Strand = Plus / Minus
Query: 205 cagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgaccat 264
|||||||||||||||||| || || ||||| | ||||| ||| | ||||| ||||| ||
Sbjct: 243 cagcatcatcggctggcattcgacggtcgggcaatgggcacgcatagagaatatgactat 184
Query: 265 cctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctccc 324
||| || || || || || || | |||||| |||||||||||||||| || || || ||
Sbjct: 183 cctgggagaagatgtacatgttggtgacgaggtctacagcaacggcggtgttgttctgcc 124
Query: 325 gcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||||||| || |||||||| ||||| |||||||||||||||
Sbjct: 123 gcacaaggagatcaagtcaagcatccttaagcctgagatcgtcatgtga 75
>gb|BU976140.1|BU976140 HA03D09u HA Hordeum vulgare subsp. vulgare cDNA clone HA03D09
3-PRIME, mRNA sequence
Length = 485
Score = 105 bits (53), Expect = 2e-021
Identities = 140/169 (82%)
Strand = Plus / Minus
Query: 205 cagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgaccat 264
|||||||||||||||||| || || ||||| | ||||| ||| | ||||| ||||| ||
Sbjct: 348 cagcatcatcggctggcattcgacggtcgggcaatgggcacgcatagagaatatgactat 289
Query: 265 cctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctccc 324
||| || || || || || || | |||||| |||||||||||||||| || || || ||
Sbjct: 288 cctgggagaagatgtacatgttggtgacgaggtctacagcaacggcggtgttgttctgcc 229
Query: 325 gcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||||||| || |||||||| ||||| |||||||||||||||
Sbjct: 228 gcacaaggagatcaagtcaagcatccttaagcctgagatcgtcatgtga 180
>gb|CK122583.1|CK122583 BES1824104h21 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010H214 5-PRIME, mRNA sequence
Length = 428
Score = 105 bits (53), Expect = 2e-021
Identities = 95/109 (87%)
Strand = Plus / Plus
Query: 29 ggcgcgcacgtcctgggcaacgtgctggtgcacgagaccgcggtcatcggggacggctgc 88
||||||||||||||||||||||||||||| |||||||| ||| |||||||| || |||
Sbjct: 320 ggcgcgcacgtcctgggcaacgtgctggtccacgagacggcgacgatcggggaagggtgc 379
Query: 89 ctcatcgggcccgacgtcgcggtcgggccaggctgcgtggtggaggccg 137
|| |||||||| ||||| || ||||| || || ||||||||||||||||
Sbjct: 380 ctgatcgggccggacgtggccgtcggccccgggtgcgtggtggaggccg 428
>gb|CV062563.1|CV062563 BNEL80d8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL80d8 5' similar to COG1208, GCD1,
Nucleoside-diphosphate-sugar pyrophosphorylase involved
in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits, mRNA
sequence
Length = 702
Score = 103 bits (52), Expect = 7e-021
Identities = 150/183 (81%)
Strand = Plus / Plus
Query: 29 ggcgcgcacgtcctgggcaacgtgctggtgcacgagaccgcggtcatcggggacggctgc 88
||||||||||||||| ||||||||||||| |||||||| ||| |||||||| || |||
Sbjct: 396 ggcgcgcacgtcctgngcaacgtgctggtccacgagacggcgacgatcggggaagggtgc 455
Query: 89 ctcatcgggcccgacgtcgcggtcgggccaggctgcgtggtggaggccggggtgcgcctg 148
|| |||||||| ||||| || ||||| || || ||||||||||| ||| ||||||| ||
Sbjct: 456 ctgatcgggccggacgtggccgtcggccccgggtgcgtggtggatgcccgggtgcggctt 515
Query: 149 tcccgctgcaccgtcatgcgcgccgcgcgcgtcaagcagcacgcctgcgtctccagcagc 208
| | |||||||| ||||| | ||| ||||| ||| |||||| ||| ||||| |||||
Sbjct: 516 gtcaggtgcaccgtgatgcgtggcgcccgcgtgaagatgcacgcgtgcatctccggcagc 575
Query: 209 atc 211
|||
Sbjct: 576 atc 578
>gb|BI777049.2|BI777049 EBpi03_SQ001_M01_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ001_M01 5', mRNA sequence
Length = 245
Score = 95.6 bits (48), Expect = 2e-018
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 290 gacgagatctacagcaacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatc 349
|||||| |||||||||||||||| || || || ||||||||||||||||| || ||||||
Sbjct: 129 gacgaggtctacagcaacggcggtgttgttctgccgcacaaggagatcaagtcaagcatc 188
Query: 350 ctcaagcccgagatcgtcatgtga 373
|| ||||| |||||||||||||||
Sbjct: 189 cttaagcctgagatcgtcatgtga 212
>gb|BQ760241.1|BQ760241 EBpi07_SQ003_K16_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ003_K16 5', mRNA sequence
Length = 357
Score = 87.7 bits (44), Expect = 4e-016
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 290 gacgagatctacagcaacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatc 349
|||||| |||||||||||||||| || || | ||||||||||||||||| || ||||||
Sbjct: 97 gacgaggtctacagcaacggcggtgttgttttgccgcacaaggagatcaagtcaagcatc 156
Query: 350 ctcaagcccgagatcgtcatgtga 373
|| ||||| |||||||||||||||
Sbjct: 157 cttaagcctgagatcgtcatgtga 180
>gb|BM371651.1|BM371651 EBma08_SQ003_I01_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ003_I01 5', mRNA sequence
Length = 173
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 345 gcatcctcaagcccgagatcgtcatgtga 373
||||||| ||||| |||||||||||||||
Sbjct: 1 gcatccttaagcctgagatcgtcatgtga 29
>gb|AL510997.1|AL510997 AL510997 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06K19u 3',
mRNA sequence
Length = 460
Score = 40.1 bits (20), Expect = 0.088
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 420 tgcattgcattgcattgcat 439
||||||||||||||||||||
Sbjct: 253 tgcattgcattgcattgcat 234
>gb|BJ469718.1|BJ469718 BJ469718 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37d03 5', mRNA sequence
Length = 699
Score = 40.1 bits (20), Expect = 0.088
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggccaggc 20
||||||||||||||||||||
Sbjct: 12 aattcggcacgaggccaggc 31
>gb|BJ471584.1|BJ471584 BJ471584 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal19h05 5', mRNA sequence
Length = 655
Score = 40.1 bits (20), Expect = 0.088
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggccaggc 20
||||||||||||||||||||
Sbjct: 23 aattcggcacgaggccaggc 42
>gb|BJ472259.1|BJ472259 BJ472259 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal33b14 5', mRNA sequence
Length = 651
Score = 40.1 bits (20), Expect = 0.088
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggccaggc 20
||||||||||||||||||||
Sbjct: 12 aattcggcacgaggccaggc 31
>gb|CB858478.1|CB858478 HI07C19w HI Hordeum vulgare subsp. vulgare cDNA clone HI07C19
3-PRIME, mRNA sequence
Length = 580
Score = 40.1 bits (20), Expect = 0.088
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 420 tgcattgcattgcattgcat 439
||||||||||||||||||||
Sbjct: 201 tgcattgcattgcattgcat 182
>gb|BE420941.1|BE420941 HWM004.B06 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.B06, mRNA sequence
Length = 1155
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggccagg 19
|||||||||||||||||||
Sbjct: 98 aattcggcacgaggccagg 116
>gb|BE421991.1|BE421991 HWM018cC.10r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM018cC.10, mRNA sequence
Length = 671
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggccagg 19
|||||||||||||||||||
Sbjct: 117 aattcggcacgaggccagg 135
>gb|AL506990.1|AL506990 AL506990 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04N10T 5',
mRNA sequence
Length = 699
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggccagg 19
|||||||||||||||||||
Sbjct: 2 aattcggcacgaggccagg 20
>gb|BG310278.1|BG310278 HVSMEc0017D21f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0017D21f, mRNA sequence
Length = 836
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 217 ctggcactccaccgtcggc 235
|||||||||||||||||||
Sbjct: 259 ctggcactccaccgtcggc 241
>gb|AV932153.1|AV932153 AV932153 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2h22 5', mRNA sequence
Length = 620
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggccagg 19
|||||||||||||||||||
Sbjct: 36 aattcggcacgaggccagg 54
>gb|AV932211.1|AV932211 AV932211 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2l10 5', mRNA sequence
Length = 549
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggccagg 19
|||||||||||||||||||
Sbjct: 12 aattcggcacgaggccagg 30
>gb|BM817250.1|BM817250 HC110G04_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC110G04_T3.ab1 similar to Sucrose
alpha-glucosidase,Dextransucrase, mRNA sequence
Length = 914
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggccagg 19
|||||||||||||||||||
Sbjct: 14 aattcggcacgaggccagg 32
>gb|BJ473219.1|BJ473219 BJ473219 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal41c06 5', mRNA sequence
Length = 634
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggccagg 19
|||||||||||||||||||
Sbjct: 23 aattcggcacgaggccagg 41
>gb|BQ763093.1|BQ763093 EBro02_SQ007_M02_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ007_M02 5', mRNA sequence
Length = 682
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 419 ttgcattgcattgcattgc 437
|||||||||||||||||||
Sbjct: 678 ttgcattgcattgcattgc 660
>gb|BU967154.1|BU967154 HB03H04r BC Hordeum vulgare subsp. vulgare cDNA clone HB03H04
5-PRIME, mRNA sequence
Length = 397
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggccagg 19
|||||||||||||||||||
Sbjct: 21 aattcggcacgaggccagg 39
>gb|CA009102.1|CA009102 HU13C22r HU Hordeum vulgare subsp. vulgare cDNA clone HU13C22
5-PRIME, mRNA sequence
Length = 583
Score = 38.2 bits (19), Expect = 0.35
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 gggcaacgtgctggtgcacgaga 65
|||||||||||||||| ||||||
Sbjct: 54 gggcaacgtgctggtggacgaga 76
>gb|CA021183.1|CA021183 HZ39F20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ39F20
5-PRIME, mRNA sequence
Length = 336
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggccagg 19
|||||||||||||||||||
Sbjct: 3 aattcggcacgaggccagg 21
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 118,825
Number of Sequences: 312970
Number of extensions: 118825
Number of successful extensions: 47023
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46937
Number of HSP's gapped (non-prelim): 78
length of query: 649
length of database: 175,134,539
effective HSP length: 19
effective length of query: 630
effective length of database: 169,188,109
effective search space: 106588508670
effective search space used: 106588508670
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)