BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2850725.2.1
(847 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM817346.1|BM817346 HC111F01_T3.ab1 HC Hordeum vulgare s... 54 8e-006
emb|X77467.1|HVOMET H.vulgare L. mRNA for flavonoid 7-O-met... 52 3e-005
gb|AL450686.1|AL450686 AL450686 Hordeum vulgare Barke etiol... 50 1e-004
gb|AL502790.1|AL502790 AL502790 Hordeum vulgare Barke roots... 50 1e-004
gb|AL502883.1|AL502883 AL502883 Hordeum vulgare Barke roots... 50 1e-004
gb|AL503330.1|AL503330 AL503330 Hordeum vulgare Barke roots... 50 1e-004
gb|AL503735.1|AL503735 AL503735 Hordeum vulgare Barke roots... 50 1e-004
gb|BF258733.1|BF258733 HVSMEf0016I14f Hordeum vulgare seedl... 50 1e-004
gb|AV916317.1|AV916317 AV916317 K. Sato unpublished cDNA li... 50 1e-004
gb|AV917949.1|AV917949 AV917949 K. Sato unpublished cDNA li... 50 1e-004
gb|AV918157.1|AV918157 AV918157 K. Sato unpublished cDNA li... 50 1e-004
gb|AV918876.1|AV918876 AV918876 K. Sato unpublished cDNA li... 50 1e-004
gb|AV920613.1|AV920613 AV920613 K. Sato unpublished cDNA li... 50 1e-004
gb|AV921748.1|AV921748 AV921748 K. Sato unpublished cDNA li... 50 1e-004
gb|AV929534.1|AV929534 AV929534 K. Sato unpublished cDNA li... 50 1e-004
gb|BJ462654.1|BJ462654 BJ462654 K. Sato unpublished cDNA li... 50 1e-004
gb|BJ463550.1|BJ463550 BJ463550 K. Sato unpublished cDNA li... 50 1e-004
gb|BJ466406.1|BJ466406 BJ466406 K. Sato unpublished cDNA li... 50 1e-004
gb|BJ467760.1|BJ467760 BJ467760 K. Sato unpublished cDNA li... 50 1e-004
gb|BJ467944.1|BJ467944 BJ467944 K. Sato unpublished cDNA li... 50 1e-004
gb|BJ468231.1|BJ468231 BJ468231 K. Sato unpublished cDNA li... 50 1e-004
gb|BQ662094.1|BQ662094 HR01I14u HR Hordeum vulgare subsp. v... 50 1e-004
gb|BI778179.2|BI778179 EBro07_SQ002_H05_R root, 3 week, red... 50 1e-004
gb|BI778623.2|BI778623 EBro07_SQ003_N10_R root, 3 week, red... 50 1e-004
gb|BI777619.2|BI777619 EBro08_SQ001_A05_R root, 3 week, dro... 50 1e-004
gb|AL501392.1|AL501392 AL501392 Hordeum vulgare Barke roots... 48 5e-004
gb|BJ468232.1|BJ468232 BJ468232 K. Sato unpublished cDNA li... 44 0.007
gb|AV918077.1|AV918077 AV918077 K. Sato unpublished cDNA li... 42 0.029
gb|AV918703.1|AV918703 AV918703 K. Sato unpublished cDNA li... 42 0.029
gb|AV918926.1|AV918926 AV918926 K. Sato unpublished cDNA li... 42 0.029
gb|AV921351.1|AV921351 AV921351 K. Sato unpublished cDNA li... 42 0.029
gb|BJ463768.1|BJ463768 BJ463768 K. Sato unpublished cDNA li... 42 0.029
gb|BJ468058.1|BJ468058 BJ468058 K. Sato unpublished cDNA li... 42 0.029
gb|BJ468335.1|BJ468335 BJ468335 K. Sato unpublished cDNA li... 42 0.029
gb|CD663222.1|CD663222 UCRHV18_04db05_b1 Drought-stressed D... 42 0.029
gb|BF624433.3|BF624433 HVSMEa0016B18f Hordeum vulgare seedl... 40 0.12
gb|BF256832.2|BF256832 HVSMEf0011C05f Hordeum vulgare seedl... 40 0.12
gb|BF257695.2|BF257695 HVSMEf0013J23f Hordeum vulgare seedl... 40 0.12
gb|BF259032.2|BF259032 HVSMEf0017H09f Hordeum vulgare seedl... 40 0.12
gb|BF259348.2|BF259348 HVSMEf0019F16f Hordeum vulgare seedl... 40 0.12
gb|BF260928.2|BF260928 HVSMEf0023E24f Hordeum vulgare seedl... 40 0.12
gb|BF256054.2|BF256054 HVSMEf0008J16f Hordeum vulgare seedl... 40 0.12
gb|BF259414.3|BF259414 HVSMEf0019A18f Hordeum vulgare seedl... 40 0.12
gb|AV920383.1|AV920383 AV920383 K. Sato unpublished cDNA li... 40 0.12
gb|AV928262.1|AV928262 AV928262 K. Sato unpublished cDNA li... 40 0.12
gb|AV929439.1|AV929439 AV929439 K. Sato unpublished cDNA li... 40 0.12
gb|BQ662115.1|BQ662115 HR01K01u HR Hordeum vulgare subsp. v... 40 0.12
gb|AL500735.1|AL500735 AL500735 Hordeum vulgare Barke roots... 38 0.46
gb|AL501157.1|AL501157 AL501157 Hordeum vulgare Barke roots... 38 0.46
gb|AL503041.1|AL503041 AL503041 Hordeum vulgare Barke roots... 38 0.46
gb|AL503073.1|AL503073 AL503073 Hordeum vulgare Barke roots... 38 0.46
gb|BM097449.2|BM097449 EBro05_SQ003_F12_R root, 3 week, red... 38 0.46
>gb|BM817346.1|BM817346 HC111F01_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC111F01_T3.ab1 similar to Hexaprenyldihydroxybenzoate
methyltransferase,Apigenin
4'-O-methyltransferase,[Myelin basic protein]-arginine
N-methyltransferase,Catechol
O-methyltransferase,Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 905
Score = 54.0 bits (27), Expect = 8e-006
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 623 gatcttcacgcagtcctcatcactccagtggtgcagcac 661
|||||| || |||||||| ||||||||||||||||||||
Sbjct: 503 gatcttgacacagtcctcgtcactccagtggtgcagcac 465
Score = 42.1 bits (21), Expect = 0.029
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 417 tagtcactgaaacctgctttctggatgaggtcacgccagtcattc 461
||||||||||| ||||||||| || ||| ||| |||||||||||
Sbjct: 709 tagtcactgaaccctgctttcatgaagagctcatgccagtcattc 665
>emb|X77467.1|HVOMET H.vulgare L. mRNA for flavonoid 7-O-methyltransferase
Length = 1402
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 624 atcttcacgcagtcctcatcactccagtggtgcagcac 661
|||||||||||||||| ||||||||||| ||||||||
Sbjct: 953 atcttcacgcagtcctgatcactccagttatgcagcac 916
>gb|AL450686.1|AL450686 AL450686 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03M11u 5', mRNA sequence
Length = 540
Score = 50.1 bits (25), Expect = 1e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtgca 657
||||||||||| || || |||||||||||||||||||
Sbjct: 472 aggatcttcacacaatcatcatcactccagtggtgca 508
>gb|AL502790.1|AL502790 AL502790 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08L17u 3', mRNA sequence
Length = 626
Score = 50.1 bits (25), Expect = 1e-004
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || || ||||| || || ||| | || | || |||||||||||
Sbjct: 424 accttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcaca 483
Query: 633 cagtcctcatcactccagtggtgcagcac 661
|| || || ||||||||||||||||||||
Sbjct: 484 caatcgtcgtcactccagtggtgcagcac 512
Score = 38.2 bits (19), Expect = 0.46
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 414 ttgtagtcactgaaacctgctttctggatgaggtcacgccagtcatt 460
|||||||| |||| ||||||||| || |||||| |||||||||||
Sbjct: 265 ttgtagtcggtgaaccctgctttcatgaagaggtctcgccagtcatt 311
>gb|AL502883.1|AL502883 AL502883 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09A12u 3', mRNA sequence
Length = 700
Score = 50.1 bits (25), Expect = 1e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
||||| || ||||| ||||| | ||| || ||||| ||||| | ||| ||||| ||||||
Sbjct: 468 acctttcccccctcctcccgcggaggaatggcctttctgcactgggctaggattttcacg 527
Query: 633 cagtcctcatcactcca 649
|| ||||||||||||||
Sbjct: 528 caatcctcatcactcca 544
>gb|AL503330.1|AL503330 AL503330 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01K22T 5', mRNA sequence
Length = 700
Score = 50.1 bits (25), Expect = 1e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || || ||||| || || ||| | || | || |||||||||||
Sbjct: 530 accttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcaca 471
Query: 633 cagtcctcatcactccagtggtgcagcac 661
|| || || ||||||||||||||||||||
Sbjct: 470 caatcgtcgtcactccagtggtgcagcac 442
Score = 38.2 bits (19), Expect = 0.46
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 414 ttgtagtcactgaaacctgctttctggatgaggtcacgccagtcatt 460
|||||||| |||| ||||||||| || |||||| |||||||||||
Sbjct: 689 ttgtagtcggtgaaccctgctttcatgaagaggtctcgccagtcatt 643
>gb|AL503735.1|AL503735 AL503735 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03D24T 5', mRNA sequence
Length = 700
Score = 50.1 bits (25), Expect = 1e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || || ||||| || || ||| | || | || |||||||||||
Sbjct: 347 accttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcaca 288
Query: 633 cagtcctcatcactccagtggtgcagcac 661
|| || || ||||||||||||||||||||
Sbjct: 287 caatcgtcgtcactccagtggtgcagcac 259
Score = 38.2 bits (19), Expect = 0.46
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 414 ttgtagtcactgaaacctgctttctggatgaggtcacgccagtcatt 460
|||||||| |||| ||||||||| || |||||| |||||||||||
Sbjct: 506 ttgtagtcggtgaaccctgctttcatgaagaggtctcgccagtcatt 460
>gb|BF258733.1|BF258733 HVSMEf0016I14f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016I14f, mRNA sequence
Length = 964
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtgcagcac 661
||||||||||| || || || ||||||||||||||||||||
Sbjct: 573 aggatcttcacacaatcgtcgtcactccagtggtgcagcac 533
>gb|AV916317.1|AV916317 AV916317 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12j23 5', mRNA sequence
Length = 585
Score = 50.1 bits (25), Expect = 1e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
||||| || ||||| ||||| | ||| || ||||| ||||| | ||| ||||| ||||||
Sbjct: 450 acctttcccccctcctcccgcggaggaatggcctttctgcactgggctaggattttcacg 391
Query: 633 cagtcctcatcactcca 649
|| ||||||||||||||
Sbjct: 390 caatcctcatcactcca 374
>gb|AV917949.1|AV917949 AV917949 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17c24 3', mRNA sequence
Length = 581
Score = 50.1 bits (25), Expect = 1e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
||||| || ||||| ||||| | ||| || ||||| ||||| | ||| ||||| ||||||
Sbjct: 450 acctttcccccctcctcccgcggaggaatggcctttctgcactgggctaggattttcacg 509
Query: 633 cagtcctcatcactcca 649
|| ||||||||||||||
Sbjct: 510 caatcctcatcactcca 526
>gb|AV918157.1|AV918157 AV918157 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20b03 3', mRNA sequence
Length = 676
Score = 50.1 bits (25), Expect = 1e-004
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || || ||||| || || ||| | || | || |||||||||||
Sbjct: 348 accttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcaca 407
Query: 633 cagtcctcatcactccagtggtgcagcac 661
|| || || ||||||||||||||||||||
Sbjct: 408 caatcgtcgtcactccagtggtgcagcac 436
Score = 38.2 bits (19), Expect = 0.46
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 414 ttgtagtcactgaaacctgctttctggatgaggtcacgccagtcatt 460
|||||||| |||| ||||||||| || |||||| |||||||||||
Sbjct: 189 ttgtagtcggtgaaccctgctttcatgaagaggtctcgccagtcatt 235
>gb|AV918876.1|AV918876 AV918876 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i22 3', mRNA sequence
Length = 543
Score = 50.1 bits (25), Expect = 1e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
||||| || ||||| ||||| | ||| || ||||| ||||| | ||| ||||| ||||||
Sbjct: 433 acctttcccccctcctcccgcggaggaatggcctttctgcactgggctaggattttcacg 492
Query: 633 cagtcctcatcactcca 649
|| ||||||||||||||
Sbjct: 493 caatcctcatcactcca 509
>gb|AV920613.1|AV920613 AV920613 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14n24 3', mRNA sequence
Length = 649
Score = 50.1 bits (25), Expect = 1e-004
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || || ||||| || || ||| | || | || |||||||||||
Sbjct: 451 accttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcaca 510
Query: 633 cagtcctcatcactccagtggtgcagcac 661
|| || || ||||||||||||||||||||
Sbjct: 511 caatcgtcgtcactccagtggtgcagcac 539
Score = 38.2 bits (19), Expect = 0.46
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 414 ttgtagtcactgaaacctgctttctggatgaggtcacgccagtcatt 460
|||||||| |||| ||||||||| || |||||| |||||||||||
Sbjct: 292 ttgtagtcggtgaaccctgctttcatgaagaggtctcgccagtcatt 338
>gb|AV921748.1|AV921748 AV921748 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12j23 3', mRNA sequence
Length = 659
Score = 50.1 bits (25), Expect = 1e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
||||| || ||||| ||||| | ||| || ||||| ||||| | ||| ||||| ||||||
Sbjct: 436 acctttcccccctcctcccgcggaggaatggcctttctgcactgggctaggattttcacg 495
Query: 633 cagtcctcatcactcca 649
|| ||||||||||||||
Sbjct: 496 caatcctcatcactcca 512
>gb|AV929534.1|AV929534 AV929534 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14j15 3', mRNA sequence
Length = 625
Score = 50.1 bits (25), Expect = 1e-004
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || || ||||| || || ||| | || | || |||||||||||
Sbjct: 417 accttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcaca 476
Query: 633 cagtcctcatcactccagtggtgcagcac 661
|| || || ||||||||||||||||||||
Sbjct: 477 caatcgtcgtcactccagtggtgcagcac 505
Score = 38.2 bits (19), Expect = 0.46
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 414 ttgtagtcactgaaacctgctttctggatgaggtcacgccagtcatt 460
|||||||| |||| ||||||||| || |||||| |||||||||||
Sbjct: 258 ttgtagtcggtgaaccctgctttcatgaagaggtctcgccagtcatt 304
>gb|BJ462654.1|BJ462654 BJ462654 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29l10 5', mRNA sequence
Length = 720
Score = 50.1 bits (25), Expect = 1e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
||||| || ||||| ||||| | ||| || ||||| ||||| | ||| ||||| ||||||
Sbjct: 495 acctttcccccctcctcccgcggaggaatggcctttctgcactgggctaggattttcacg 436
Query: 633 cagtcctcatcactcca 649
|| ||||||||||||||
Sbjct: 435 caatcctcatcactcca 419
>gb|BJ463550.1|BJ463550 BJ463550 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32h07 5', mRNA sequence
Length = 540
Score = 50.1 bits (25), Expect = 1e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
||||| || ||||| ||||| | ||| || ||||| ||||| | ||| ||||| ||||||
Sbjct: 261 acctttcccccctcctcccgcggaggaatggcctttctgcactgggctaggattttcacg 202
Query: 633 cagtcctcatcactcca 649
|| ||||||||||||||
Sbjct: 201 caatcctcatcactcca 185
>gb|BJ466406.1|BJ466406 BJ466406 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31p18 3', mRNA sequence
Length = 613
Score = 50.1 bits (25), Expect = 1e-004
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || || ||||| || || ||| | || | || |||||||||||
Sbjct: 362 accttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcaca 421
Query: 633 cagtcctcatcactccagtggtgcagcac 661
|| || || ||||||||||||||||||||
Sbjct: 422 caatcgtcgtcactccagtggtgcagcac 450
Score = 38.2 bits (19), Expect = 0.46
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 414 ttgtagtcactgaaacctgctttctggatgaggtcacgccagtcatt 460
|||||||| |||| ||||||||| || |||||| |||||||||||
Sbjct: 203 ttgtagtcggtgaaccctgctttcatgaagaggtctcgccagtcatt 249
>gb|BJ467760.1|BJ467760 BJ467760 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29l10 3', mRNA sequence
Length = 779
Score = 50.1 bits (25), Expect = 1e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
||||| || ||||| ||||| | ||| || ||||| ||||| | ||| ||||| ||||||
Sbjct: 414 acctttcccccctcctcccgcggaggaatggcctttctgcactgggctaggattttcacg 473
Query: 633 cagtcctcatcactcca 649
|| ||||||||||||||
Sbjct: 474 caatcctcatcactcca 490
>gb|BJ467944.1|BJ467944 BJ467944 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30g22 3', mRNA sequence
Length = 638
Score = 50.1 bits (25), Expect = 1e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
||||| || ||||| ||||| | ||| || ||||| ||||| | ||| ||||| ||||||
Sbjct: 455 acctttcccccctcctcccgcggaggaatggcctttctgcactgggctaggattttcacg 514
Query: 633 cagtcctcatcactcca 649
|| ||||||||||||||
Sbjct: 515 caatcctcatcactcca 531
>gb|BJ468231.1|BJ468231 BJ468231 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m03 3', mRNA sequence
Length = 626
Score = 50.1 bits (25), Expect = 1e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
||||| || ||||| ||||| | ||| || ||||| ||||| | ||| ||||| ||||||
Sbjct: 401 acctttcccccctcctcccgcggaggaatggcctttctgcactgggctaggattttcacg 460
Query: 633 cagtcctcatcactcca 649
|| ||||||||||||||
Sbjct: 461 caatcctcatcactcca 477
>gb|BQ662094.1|BQ662094 HR01I14u HR Hordeum vulgare subsp. vulgare cDNA clone HR01I14
3-PRIME, mRNA sequence
Length = 544
Score = 50.1 bits (25), Expect = 1e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
||||| || ||||| ||||| | ||| || ||||| ||||| | ||| ||||| ||||||
Sbjct: 443 acctttcccccctcctcccgcggaggaatggcctttctgcactgggctaggattttcacg 502
Query: 633 cagtcctcatcactcca 649
|| ||||||||||||||
Sbjct: 503 caatcctcatcactcca 519
>gb|BI778179.2|BI778179 EBro07_SQ002_H05_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ002_H05 5', mRNA sequence
Length = 643
Score = 50.1 bits (25), Expect = 1e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtgca 657
||||||||||| || || |||||||||||||||||||
Sbjct: 611 aggatcttcacacaatcatcatcactccagtggtgca 575
>gb|BI778623.2|BI778623 EBro07_SQ003_N10_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ003_N10 5', mRNA sequence
Length = 604
Score = 50.1 bits (25), Expect = 1e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
||||| || ||||| ||||| | ||| || ||||| ||||| | ||| ||||| ||||||
Sbjct: 474 acctttcccccctcctcccgcggaggaatggcctttctgcactgggctaggattttcacg 415
Query: 633 cagtcctcatcactcca 649
|| ||||||||||||||
Sbjct: 414 caatcctcatcactcca 398
>gb|BI777619.2|BI777619 EBro08_SQ001_A05_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ001_A05 5', mRNA sequence
Length = 400
Score = 50.1 bits (25), Expect = 1e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || || ||||| || || ||| | || | || |||||||||||
Sbjct: 219 accttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcaca 160
Query: 633 cagtcctcatcactccagtggtgcagcac 661
|| || || ||||||||||||||||||||
Sbjct: 159 caatcgtcgtcactccagtggtgcagcac 131
Score = 38.2 bits (19), Expect = 0.46
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 414 ttgtagtcactgaaacctgctttctggatgaggtcacgccagtcatt 460
|||||||| |||| ||||||||| || |||||| |||||||||||
Sbjct: 378 ttgtagtcggtgaaccctgctttcatgaagaggtctcgccagtcatt 332
>gb|AL501392.1|AL501392 AL501392 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04A17u 3', mRNA sequence
Length = 539
Score = 48.1 bits (24), Expect = 5e-004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 623 gatcttcacgcagtcctcatcactccagtggtgcagcac 661
|||||| || |||||||| |||||||||||| |||||||
Sbjct: 397 gatcttgacacagtcctcgtcactccagtggngcagcac 435
Score = 42.1 bits (21), Expect = 0.029
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 417 tagtcactgaaacctgctttctggatgaggtcacgccagtcattc 461
||||||||||| ||||||||| || ||| ||| |||||||||||
Sbjct: 191 tagtcactgaaccctgctttcatgaagagctcatgccagtcattc 235
>gb|BJ468232.1|BJ468232 BJ468232 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m04 3', mRNA sequence
Length = 568
Score = 44.1 bits (22), Expect = 0.007
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
||||| || ||||| ||||| | ||| || ||||| ||||| | ||| ||||| || |||
Sbjct: 400 acctttcccccctcctcccgcggaggaatggcctttctgcactgggctaggattttnacg 459
Query: 633 cagtcctcatcactcca 649
|| ||||||||||||||
Sbjct: 460 caatcctcatcactcca 476
>gb|AV918077.1|AV918077 AV918077 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17l08 3', mRNA sequence
Length = 640
Score = 42.1 bits (21), Expect = 0.029
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtgca 657
||||||||||| || || ||||| |||||||||||||
Sbjct: 462 aggatcttcacacaatcatcatcgctccagtggtgca 498
>gb|AV918703.1|AV918703 AV918703 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21p04 3', mRNA sequence
Length = 654
Score = 42.1 bits (21), Expect = 0.029
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtgca 657
||||||||||| || || ||||| |||||||||||||
Sbjct: 463 aggatcttcacacaatcatcatcgctccagtggtgca 499
>gb|AV918926.1|AV918926 AV918926 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22l17 3', mRNA sequence
Length = 655
Score = 42.1 bits (21), Expect = 0.029
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtgca 657
||||||||||| || || ||||| |||||||||||||
Sbjct: 465 aggatcttcacacaatcatcatcgctccagtggtgca 501
>gb|AV921351.1|AV921351 AV921351 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23c06 3', mRNA sequence
Length = 657
Score = 42.1 bits (21), Expect = 0.029
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtgca 657
||||||||||| || || ||||| |||||||||||||
Sbjct: 463 aggatcttcacacaatcatcatcgctccagtggtgca 499
>gb|BJ463768.1|BJ463768 BJ463768 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30g22 5', mRNA sequence
Length = 626
Score = 42.1 bits (21), Expect = 0.029
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 621 aggatcttcacgcagtcctcatcactcca 649
||||| |||||||| ||||||||||||||
Sbjct: 613 aggattttcacgcaatcctcatcactcca 585
>gb|BJ468058.1|BJ468058 BJ468058 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30o16 3', mRNA sequence
Length = 674
Score = 42.1 bits (21), Expect = 0.029
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtgca 657
||||||||||| || || ||||| |||||||||||||
Sbjct: 483 aggatcttcacacaatcatcatcgctccagtggtgca 519
>gb|BJ468335.1|BJ468335 BJ468335 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38e18 3', mRNA sequence
Length = 744
Score = 42.1 bits (21), Expect = 0.029
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtgca 657
||||||||||| || || ||||| |||||||||||||
Sbjct: 462 aggatcttcacacaatcatcatcgctccagtggtgca 498
>gb|CD663222.1|CD663222 UCRHV18_04db05_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_04db05, mRNA sequence
Length = 545
Score = 42.1 bits (21), Expect = 0.029
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtgca 657
||||||||||| || || ||||| |||||||||||||
Sbjct: 480 aggatcttcacacaatcatcatcgctccagtggtgca 516
>gb|BF624433.3|BF624433 HVSMEa0016B18f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0016B18f, mRNA sequence
Length = 741
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 717 acatagttaacaacaccatc 736
||||||||||||||||||||
Sbjct: 246 acatagttaacaacaccatc 227
>gb|BF256832.2|BF256832 HVSMEf0011C05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011C05f, mRNA sequence
Length = 592
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 717 acatagttaacaacaccatc 736
||||||||||||||||||||
Sbjct: 487 acatagttaacaacaccatc 468
>gb|BF257695.2|BF257695 HVSMEf0013J23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013J23f, mRNA sequence
Length = 550
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 642 tcactccagtggtgcagcac 661
||||||||||||||||||||
Sbjct: 273 tcactccagtggtgcagcac 254
>gb|BF259032.2|BF259032 HVSMEf0017H09f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0017H09f, mRNA sequence
Length = 823
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 717 acatagttaacaacaccatc 736
||||||||||||||||||||
Sbjct: 272 acatagttaacaacaccatc 253
>gb|BF259348.2|BF259348 HVSMEf0019F16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019F16f, mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 717 acatagttaacaacaccatc 736
||||||||||||||||||||
Sbjct: 229 acatagttaacaacaccatc 210
>gb|BF260928.2|BF260928 HVSMEf0023E24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023E24f, mRNA sequence
Length = 729
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 717 acatagttaacaacaccatc 736
||||||||||||||||||||
Sbjct: 527 acatagttaacaacaccatc 508
>gb|BF256054.2|BF256054 HVSMEf0008J16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0008J16f, mRNA sequence
Length = 447
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 717 acatagttaacaacaccatc 736
||||||||||||||||||||
Sbjct: 178 acatagttaacaacaccatc 159
>gb|BF259414.3|BF259414 HVSMEf0019A18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019A18f, mRNA sequence
Length = 522
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 717 acatagttaacaacaccatc 736
||||||||||||||||||||
Sbjct: 246 acatagttaacaacaccatc 227
>gb|AV920383.1|AV920383 AV920383 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13l15 3', mRNA sequence
Length = 682
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 717 acatagttaacaacaccatc 736
||||||||||||||||||||
Sbjct: 604 acatagttaacaacaccatc 623
>gb|AV928262.1|AV928262 AV928262 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27k15 3', mRNA sequence
Length = 728
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 717 acatagttaacaacaccatc 736
||||||||||||||||||||
Sbjct: 612 acatagttaacaacaccatc 631
>gb|AV929439.1|AV929439 AV929439 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14d20 3', mRNA sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 717 acatagttaacaacaccatc 736
||||||||||||||||||||
Sbjct: 583 acatagttaacaacaccatc 602
>gb|BQ662115.1|BQ662115 HR01K01u HR Hordeum vulgare subsp. vulgare cDNA clone HR01K01
3-PRIME, mRNA sequence
Length = 528
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 717 acatagttaacaacaccatc 736
||||||||||||||||||||
Sbjct: 430 acatagttaacaacaccatc 449
>gb|AL500735.1|AL500735 AL500735 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01K22u 3', mRNA sequence
Length = 593
Score = 38.2 bits (19), Expect = 0.46
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtg 655
||||||||||| || || || ||||||||||||||
Sbjct: 479 aggatcttcacacaatcgtcgtcactccagtggtg 513
Score = 38.2 bits (19), Expect = 0.46
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 414 ttgtagtcactgaaacctgctttctggatgaggtcacgccagtcatt 460
|||||||| |||| ||||||||| || |||||| |||||||||||
Sbjct: 271 ttgtagtcggtgaaccctgctttcatgaagaggtctcgccagtcatt 317
>gb|AL501157.1|AL501157 AL501157 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03D24u 3', mRNA sequence
Length = 552
Score = 38.2 bits (19), Expect = 0.46
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 414 ttgtagtcactgaaacctgctttctggatgaggtcacgccagtcatt 460
|||||||| |||| ||||||||| || |||||| |||||||||||
Sbjct: 285 ttgtagtcggtgaaccctgctttcatgaagaggtctcgccagtcatt 331
>gb|AL503041.1|AL503041 AL503041 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09I12u 3', mRNA sequence
Length = 518
Score = 38.2 bits (19), Expect = 0.46
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 414 ttgtagtcactgaaacctgctttctggatgaggtcacgccagtcatt 460
|||||||| |||| ||||||||| || |||||| |||||||||||
Sbjct: 285 ttgtagtcggtgaaccctgctttcatgaagaggtctcgccagtcatt 331
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 74,083
Number of Sequences: 312970
Number of extensions: 74083
Number of successful extensions: 22783
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22658
Number of HSP's gapped (non-prelim): 125
length of query: 847
length of database: 175,134,539
effective HSP length: 19
effective length of query: 828
effective length of database: 169,188,109
effective search space: 140087754252
effective search space used: 140087754252
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)