BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763110.2.1
(541 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV929028.1|AV929028 AV929028 K. Sato unpublished cDNA li... 48 3e-004
gb|AV929029.1|AV929029 AV929029 K. Sato unpublished cDNA li... 46 0.001
gb|AV913934.1|AV913934 AV913934 K. Sato unpublished cDNA li... 42 0.018
gb|AV914567.1|AV914567 AV914567 K. Sato unpublished cDNA li... 42 0.018
gb|AV916927.1|AV916927 AV916927 K. Sato unpublished cDNA li... 42 0.018
gb|AV918176.1|AV918176 AV918176 K. Sato unpublished cDNA li... 42 0.018
gb|AV918301.1|AV918301 AV918301 K. Sato unpublished cDNA li... 42 0.018
gb|AV919647.1|AV919647 AV919647 K. Sato unpublished cDNA li... 42 0.018
gb|AV921548.1|AV921548 AV921548 K. Sato unpublished cDNA li... 42 0.018
gb|AV922405.1|AV922405 AV922405 K. Sato unpublished cDNA li... 42 0.018
gb|BJ464184.1|BJ464184 BJ464184 K. Sato unpublished cDNA li... 42 0.018
gb|BJ466861.1|BJ466861 BJ466861 K. Sato unpublished cDNA li... 42 0.018
gb|CA015705.1|CA015705 HV12J09u HV Hordeum vulgare subsp. v... 42 0.018
gb|BF628643.2|BF628643 HVSMEb0006N23f Hordeum vulgare seedl... 38 0.29
>gb|AV929028.1|AV929028 AV929028 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20l03 3', mRNA sequence
Length = 557
Score = 48.1 bits (24), Expect = 3e-004
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 8 gagaacttcaggatccacccaccggggaccttgttgattccacgggagaccatgaggagc 67
|||||||||||| | |||||||||||||| || |||||||| | || |||||| ||||
Sbjct: 206 gagaacttcaggctgcacccaccggggactctgctgattccaagagaaaccatgcagagc 147
Query: 68 tgcg 71
||||
Sbjct: 146 tgcg 143
>gb|AV929029.1|AV929029 AV929029 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20l04 3', mRNA sequence
Length = 209
Score = 46.1 bits (23), Expect = 0.001
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 8 gagaacttcaggatccacccaccggggaccttgttgattcca 49
|||||||||||| | |||||||||||||| || ||||||||
Sbjct: 168 gagaacttcaggctgcacccaccggggactntgctgattcca 127
>gb|AV913934.1|AV913934 AV913934 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m23 5', mRNA sequence
Length = 660
Score = 42.1 bits (21), Expect = 0.018
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 134 agggatcctagcatctgggatcgcccggaggagttca 170
||||||||||||| |||||| |||| ||||||||||
Sbjct: 311 agggatcctagcaactgggagagcccagaggagttca 347
>gb|AV914567.1|AV914567 AV914567 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6p16 5', mRNA sequence
Length = 618
Score = 42.1 bits (21), Expect = 0.018
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 134 agggatcctagcatctgggatcgcccggaggagttca 170
||||||||||||| |||||| |||| ||||||||||
Sbjct: 490 agggatcctagcaactgggagagcccagaggagttca 526
>gb|AV916927.1|AV916927 AV916927 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20c01 5', mRNA sequence
Length = 533
Score = 42.1 bits (21), Expect = 0.018
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 134 agggatcctagcatctgggatcgcccggaggagttca 170
||||||||||||| |||||| |||| ||||||||||
Sbjct: 325 agggatcctagcaactgggagagcccagaggagttca 361
>gb|AV918176.1|AV918176 AV918176 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20c01 3', mRNA sequence
Length = 655
Score = 42.1 bits (21), Expect = 0.018
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 134 agggatcctagcatctgggatcgcccggaggagttca 170
||||||||||||| |||||| |||| ||||||||||
Sbjct: 426 agggatcctagcaactgggagagcccagaggagttca 390
>gb|AV918301.1|AV918301 AV918301 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20j07 3', mRNA sequence
Length = 660
Score = 42.1 bits (21), Expect = 0.018
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 134 agggatcctagcatctgggatcgcccggaggagttca 170
||||||||||||| |||||| |||| ||||||||||
Sbjct: 391 agggatcctagcaactgggagagcccagaggagttca 355
>gb|AV919647.1|AV919647 AV919647 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6p16 3', mRNA sequence
Length = 703
Score = 42.1 bits (21), Expect = 0.018
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 134 agggatcctagcatctgggatcgcccggaggagttca 170
||||||||||||| |||||| |||| ||||||||||
Sbjct: 408 agggatcctagcaactgggagagcccagaggagttca 372
>gb|AV921548.1|AV921548 AV921548 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m23 3', mRNA sequence
Length = 560
Score = 42.1 bits (21), Expect = 0.018
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 134 agggatcctagcatctgggatcgcccggaggagttca 170
||||||||||||| |||||| |||| ||||||||||
Sbjct: 423 agggatcctagcaactgggagagcccagaggagttca 387
>gb|AV922405.1|AV922405 AV922405 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18b09 3', mRNA sequence
Length = 618
Score = 42.1 bits (21), Expect = 0.018
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 134 agggatcctagcatctgggatcgcccggaggagttca 170
||||||||||||| |||||| |||| ||||||||||
Sbjct: 427 agggatcctagcaactgggagagcccagaggagttca 391
>gb|BJ464184.1|BJ464184 BJ464184 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33d19 5', mRNA sequence
Length = 597
Score = 42.1 bits (21), Expect = 0.018
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 134 agggatcctagcatctgggatcgcccggaggagttca 170
||||||||||||| |||||| |||| ||||||||||
Sbjct: 526 agggatcctagcaactgggagagcccagaggagttca 562
>gb|BJ466861.1|BJ466861 BJ466861 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34j09 3', mRNA sequence
Length = 719
Score = 42.1 bits (21), Expect = 0.018
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 134 agggatcctagcatctgggatcgcccggaggagttca 170
||||||||||||| |||||| |||| ||||||||||
Sbjct: 390 agggatcctagcaactgggagagcccagaggagttca 354
>gb|CA015705.1|CA015705 HV12J09u HV Hordeum vulgare subsp. vulgare cDNA clone HV12J09
3-PRIME, mRNA sequence
Length = 518
Score = 42.1 bits (21), Expect = 0.018
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 134 agggatcctagcatctgggatcgcccggaggagttca 170
||||||||||||| |||||| |||| ||||||||||
Sbjct: 462 agggatcctagcaactgggagagcccagaggagttca 426
>gb|BF628643.2|BF628643 HVSMEb0006N23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006N23f, mRNA sequence
Length = 739
Score = 38.2 bits (19), Expect = 0.29
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 272 ggtgtcgccaatgtggagcttgt 294
||||||||| |||||||||||||
Sbjct: 85 ggtgtcgccgatgtggagcttgt 63
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 56,521
Number of Sequences: 312970
Number of extensions: 56521
Number of successful extensions: 14696
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14682
Number of HSP's gapped (non-prelim): 14
length of query: 541
length of database: 175,134,539
effective HSP length: 19
effective length of query: 522
effective length of database: 169,188,109
effective search space: 88316192898
effective search space used: 88316192898
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)