BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2762998.2.1
(1036 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ454372.1|BJ454372 BJ454372 K. Sato unpublished cDNA li... 266 1e-069
gb|BQ134693.1|BQ134693 LP30190 Lemma/palea-enriched cDNA li... 161 6e-038
gb|BJ462176.1|BJ462176 BJ462176 K. Sato unpublished cDNA li... 153 1e-035
gb|BQ659812.1|BQ659812 HF01M18w HF Hordeum vulgare subsp. v... 48 6e-004
>gb|BJ454372.1|BJ454372 BJ454372 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24c20 5', mRNA sequence
Length = 561
Score = 266 bits (134), Expect = 1e-069
Identities = 275/322 (85%)
Strand = Plus / Minus
Query: 522 aatattgtggtatttgccaaagaatgctcattggaacagcagccttctcatgaatgagac 581
|||| |||||||||||||||||||||||||| ||||||||| | |||||||||| ||||
Sbjct: 546 aatactgtggtatttgccaaagaatgctcatcggaacagcaacattctcatgaacaagac 487
Query: 582 cttcagacctggcaatctctaaacgcttcaactcaactagagctgcagataccatcgcga 641
| |||| ||||||||||||||| |||||||||||||| ||||||||||||||||| | |
Sbjct: 486 cctcagtcctggcaatctctaagcgcttcaactcaacaagagctgcagataccattgtca 427
Query: 642 gaatggacaggactaatccaattcccatccgctgtagctcagaaaaacccttctcccttc 701
|||||| |||||||||||||| ||||| |||||||||||||| |||||||| |||||||
Sbjct: 426 taatggataggactaatccaatgcccattcgctgtagctcagagaaacccttttcccttc 367
Query: 702 cagtgaattttctagctagtggcaccaggatgcggtcatagagtgggacccacatgatga 761
||||||| |||||||||| || | || || |||||||| | ||| | ||| || ||||
Sbjct: 366 cagtgaactttctagctatgggtatgagtatacggtcataaattggaatccagatcatga 307
Query: 762 cgctgattacatcaaaagtggagagagatgcaggaggaatgttgaaagacccaatgcgct 821
| |||||||| || ||||| | || |||||||||||||| | |||||| |||| || |
Sbjct: 306 cactgattacgtcgaaagttaatagggatgcaggaggaatatcgaaagatccaacccgtt 247
Query: 822 tgtcaagaaccatgccctgctc 843
||||||||||||| ||||||||
Sbjct: 246 tgtcaagaaccattccctgctc 225
>gb|BQ134693.1|BQ134693 LP30190 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-190
similar to Peptide transporter, similar to 15076661,
mRNA sequence
Length = 521
Score = 161 bits (81), Expect = 6e-038
Identities = 183/217 (84%)
Strand = Plus / Minus
Query: 263 acaaagcttatccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattg 322
|||||||| | ||||||||| ||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 242 acaaagctgacccctgcaatcaaccaaaagaaccggtcaagatggccttcgttcaggtta 183
Query: 323 tcagggatccatccaggatctcctccctgagttgtaatgtacgacaccaatgtcagtatg 382
|| |||||||||||||||||||| || ||||||||| ||| |||||||| |||| ||||
Sbjct: 182 tccgggatccatccaggatctccacctcgagttgtaacgtaagacaccaaggtcaatatg 123
Query: 383 atggagcttatatagtttcccagtgagactgtaataagtgcaagtgcactacataaactc 442
| ||||||| |||| | || |||||| || | || |||| |||| |||||||||
Sbjct: 122 aatgagcttaaatagctccctgctgagaccgtgacgagcgcaaatgcagcacataaactt 63
Query: 443 ctcatggcatctggggcctgatcgtaaaagaactcaa 479
||||||||||||||||||||||| || ||||||||||
Sbjct: 62 ctcatggcatctggggcctgatcatagaagaactcaa 26
>gb|BJ462176.1|BJ462176 BJ462176 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24c20 3', mRNA sequence
Length = 319
Score = 153 bits (77), Expect = 1e-035
Identities = 172/203 (84%), Gaps = 1/203 (0%)
Strand = Plus / Plus
Query: 262 tacaaagcttatccctgcaattaaccaaaagaaccggtcgagatggccttcattcagatt 321
||||||||| |||||||| | |||||||| ||||||||||||||||||||||||| ||
Sbjct: 115 tacaaagctgatccctgccagcaaccaaaaaaaccggtcgagatggccttcattcaagtt 174
Query: 322 gtcagggatccatccaggatctcctccctgagttgtaatgtacgacaccaatgtcagtat 381
|| ||||||||||| | ||||||||| |||||||||| ||| |||||||| |||| |||
Sbjct: 175 atctgggatccatcctgcatctcctccttgagttgtaaggtatgacaccaaggtcaatat 234
Query: 382 gatg-gagcttatatagtttcccagtgagactgtaataagtgcaagtgcactacataaac 440
|||| ||||||| |||| | |||| | ||| | || |||||| | |||| |||||| |
Sbjct: 235 gatgtgagcttaaatagctncccaccgtgaccgnaacaagtgccaatgcagcacataagc 294
Query: 441 tcctcatggcatctggggcctga 463
|||||||||||||||||||||||
Sbjct: 295 tcctcatggcatctggggcctga 317
>gb|BQ659812.1|BQ659812 HF01M18w HF Hordeum vulgare subsp. vulgare cDNA clone HF01M18
3-PRIME, mRNA sequence
Length = 682
Score = 48.1 bits (24), Expect = 6e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 290 aagaaccggtcgagatggccttcattcagattgtcagggatcca 333
||||| ||||| || |||||||||||||| |||||||| |||||
Sbjct: 257 aagaagcggtcaaggtggccttcattcaggttgtcaggaatcca 300
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 69,830
Number of Sequences: 312970
Number of extensions: 69830
Number of successful extensions: 18247
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18239
Number of HSP's gapped (non-prelim): 6
length of query: 1036
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1017
effective length of database: 169,188,109
effective search space: 172064306853
effective search space used: 172064306853
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)