BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750995.2.1
(729 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ466912.1|BQ466912 HS01P12T HS Hordeum vulgare subsp. v... 626 e-178
gb|AL508879.1|AL508879 AL508879 Hordeum vulgare Barke devel... 620 e-176
gb|AV925561.1|AV925561 AV925561 K. Sato unpublished cDNA li... 618 e-176
gb|BM816400.1|BM816400 HB01H04_T3.ab1 HB Hordeum vulgare su... 618 e-176
gb|BM816401.1|BM816401 HC107A12_SK.ab1 HC Hordeum vulgare s... 618 e-176
gb|BF616987.2|BF616987 HVSMEc0014C22f Hordeum vulgare seedl... 613 e-174
gb|BI959946.1|BI959946 HVSMEn0022I18f Hordeum vulgare rachi... 611 e-173
gb|BQ467241.1|BQ467241 HS03C03r HS Hordeum vulgare subsp. v... 607 e-172
gb|BQ463301.1|BQ463301 HI04L11r HI Hordeum vulgare subsp. v... 605 e-172
gb|AL503349.1|AL503349 AL503349 Hordeum vulgare Barke roots... 599 e-170
gb|AL505083.1|AL505083 AL505083 Hordeum vulgare Barke roots... 599 e-170
gb|AL506436.1|AL506436 AL506436 Hordeum vulgare Barke devel... 599 e-170
gb|BJ463791.1|BJ463791 BJ463791 K. Sato unpublished cDNA li... 599 e-170
gb|CA016350.1|CA016350 HV09D04u HV Hordeum vulgare subsp. v... 599 e-170
gb|CA025152.1|CA025152 HZ51F19r HZ Hordeum vulgare subsp. v... 599 e-170
gb|BI957579.1|BI957579 HVSMEn0010D11f Hordeum vulgare rachi... 581 e-164
gb|BM442821.2|BM442821 EBro02_SQ001_G08_R root, 3 week, hyd... 581 e-164
gb|CA017709.1|CA017709 HV05P24r HV Hordeum vulgare subsp. v... 579 e-164
gb|BQ760165.1|BQ760165 EBpi07_SQ003_K12_R pistil, 12 DPA, n... 541 e-152
gb|BI959152.1|BI959152 HVSMEn0018G12f Hordeum vulgare rachi... 539 e-152
gb|BF619636.2|BF619636 HVSMEc0008A14f Hordeum vulgare seedl... 525 e-148
gb|BF260772.2|BF260772 HVSMEf0022O12f Hordeum vulgare seedl... 511 e-144
gb|BG309280.1|BG309280 HVSMEc0006P01f Hordeum vulgare seedl... 494 e-138
gb|CA003702.1|CA003702 HS15E20r HS Hordeum vulgare subsp. v... 460 e-128
gb|CA021411.1|CA021411 HZ40A11r HZ Hordeum vulgare subsp. v... 452 e-126
gb|CA019890.1|CA019890 HV13K02r HV Hordeum vulgare subsp. v... 434 e-120
gb|AL506993.1|AL506993 AL506993 Hordeum vulgare Barke devel... 422 e-117
gb|BM816402.1|BM816402 HC108C02_SK.ab1 HC Hordeum vulgare s... 416 e-115
gb|BF616088.2|BF616088 HVSMEc0001N05f Hordeum vulgare seedl... 408 e-112
gb|AL508901.1|AL508901 AL508901 Hordeum vulgare Barke devel... 389 e-107
gb|BU997483.1|BU997483 HI08C03r HI Hordeum vulgare subsp. v... 389 e-107
gb|BI958896.1|BI958896 HVSMEn0017B09f Hordeum vulgare rachi... 381 e-104
gb|BF628180.2|BF628180 HVSMEb0003F15f Hordeum vulgare seedl... 377 e-103
gb|AV916045.1|AV916045 AV916045 K. Sato unpublished cDNA li... 375 e-102
gb|CA026863.1|CA026863 HZ57D02r HZ Hordeum vulgare subsp. v... 369 e-101
gb|BF261636.3|BF261636 HV_CEa0001M22f Hordeum vulgare seedl... 343 5e-093
gb|CA024930.1|CA024930 HZ50L17r HZ Hordeum vulgare subsp. v... 341 2e-092
gb|BM097230.2|BM097230 EBpi07_SQ002_M24_R pistil, 12 DPA, n... 339 8e-092
gb|AL507609.1|AL507609 AL507609 Hordeum vulgare Barke devel... 331 2e-089
gb|BJ463675.1|BJ463675 BJ463675 K. Sato unpublished cDNA li... 325 1e-087
gb|AL508647.1|AL508647 AL508647 Hordeum vulgare Barke devel... 313 4e-084
gb|BJ464802.1|BJ464802 BJ464802 K. Sato unpublished cDNA li... 309 7e-083
gb|BF257056.2|BF257056 HVSMEf0011L20f Hordeum vulgare seedl... 307 3e-082
gb|BI959824.1|BI959824 HVSMEn0021M21f Hordeum vulgare rachi... 303 4e-081
gb|BJ463554.1|BJ463554 BJ463554 K. Sato unpublished cDNA li... 303 4e-081
gb|CA025709.1|CA025709 HZ52O20r HZ Hordeum vulgare subsp. v... 301 2e-080
gb|BI959557.1|BI959557 HVSMEn0020C22f Hordeum vulgare rachi... 299 7e-080
gb|CA025630.1|CA025630 HZ52L09r HZ Hordeum vulgare subsp. v... 272 2e-071
gb|BI948049.1|BI948049 HVSMEl0007P24f Hordeum vulgare spike... 270 6e-071
gb|BQ467197.1|BQ467197 HS02P12r HS Hordeum vulgare subsp. v... 254 4e-066
gb|BE454727.2|BE454727 HVSMEh0095I10f Hordeum vulgare 5-45 ... 246 9e-064
gb|BF619581.2|BF619581 HVSMEc0004G17f Hordeum vulgare seedl... 214 3e-054
gb|BI955359.1|BI955359 HVSMEm0022M03f Hordeum vulgare green... 210 5e-053
gb|BQ739900.1|BQ739900 HB05E08 HB Hordeum vulgare subsp. vu... 190 4e-047
gb|BQ739988.1|BQ739988 HB107G05 HB Hordeum vulgare subsp. v... 190 4e-047
gb|BQ740120.1|BQ740120 HC107H03 HC Hordeum vulgare subsp. v... 190 4e-047
gb|CA020731.1|CA020731 HZ37G18r HZ Hordeum vulgare subsp. v... 180 4e-044
gb|CK125199.1|CK125199 BES1824107d13 BES1824 Hordeum vulgar... 153 1e-035
gb|BQ760622.1|BQ760622 EBro03_SQ002_M21_R root, 3 week, wat... 131 4e-029
gb|BI958281.1|BI958281 HVSMEn0014D12f Hordeum vulgare rachi... 109 1e-022
gb|BF629636.2|BF629636 HVSMEb0012P16f Hordeum vulgare seedl... 86 2e-015
gb|BE422168.1|BE422168 HWM021cA.04r ITEC HWM Barley Leaf Li... 74 7e-012
gb|CA018721.1|CA018721 HV09H09r HV Hordeum vulgare subsp. v... 64 7e-009
gb|BI946666.1|BI946666 HVSMEl0001I21f Hordeum vulgare spike... 44 0.006
>gb|BQ466912.1|BQ466912 HS01P12T HS Hordeum vulgare subsp. vulgare cDNA clone HS01P12
5-PRIME, mRNA sequence
Length = 659
Score = 626 bits (316), Expect = e-178
Identities = 425/462 (91%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 126 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctgt 185
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| |||||||| || || || ||||||||||||||||||||
Sbjct: 186 cattgccatcaagtgcccagcaattgaggtggtggtcgtcgacatctccaagccccgcat 245
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 246 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 305
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 306 ggcctgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgaggc 365
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||||
Sbjct: 366 cgacatcatcttcgtctccgtcaacacccccaccaagacccgtggtctgggagccggcaa 425
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct: 426 ggctgccgacctcacctactgggagagcgccgcccggatgatcgccgatgtgtccaagtc 485
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaa 616
||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 486 ggacaagatcgtcgtcgagaagtccaccgtccccgtcaagaccgcagaggccattgagaa 545
Query: 617 gatcttgacccacnncagcaagggcatcaactaccagatcct 658
|||| |||||||| |||||||||||||||||||||||||||
Sbjct: 546 gatcctgacccacaacagcaagggcatcaactaccagatcct 587
>gb|AL508879.1|AL508879 AL508879 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10B08V 5',
mRNA sequence
Length = 659
Score = 620 bits (313), Expect = e-176
Identities = 424/462 (91%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 90 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctgt 149
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| |||||||| || || || ||||||||||||||||||||
Sbjct: 150 cattgccatcaagtgcccagcaattgaggtggtggtcgtcgacatctccaagccccgcat 209
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 210 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 269
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 270 ggcctgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgaggc 329
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||||
Sbjct: 330 cgacatcatcttcgtctccgtcaacacccccaccaagacccgtggtctgggagccggcaa 389
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct: 390 ggctgccgacctcacctactgggagagcgccgcccggatgatcgccgatgtgtccaagtc 449
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaa 616
||||||||||| | |||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 450 ggacaagatcgtcgncgagaagtccaccgtccccgtcaagaccgcagaggccattgagaa 509
Query: 617 gatcttgacccacnncagcaagggcatcaactaccagatcct 658
|||| |||||||| |||||||||||||||||||||||||||
Sbjct: 510 gatcctgacccacaacagcaagggcatcaactaccagatcct 551
>gb|AV925561.1|AV925561 AV925561 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24o01 5', mRNA sequence
Length = 652
Score = 618 bits (312), Expect = e-176
Identities = 424/462 (91%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||
Sbjct: 113 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccgacaatggctgt 172
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| |||||||| || || || ||||||||||||||||||||
Sbjct: 173 cattgccatcaagtgcccagcaattgaggtggtggtcgtcgacatctccaagccccgcat 232
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 233 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 292
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 293 ggcctgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgaggc 352
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||||
Sbjct: 353 cgacatcatcttcgtctccgtcaacacccccaccaagacccgtggtctgggagccggcaa 412
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct: 413 ggctgccgacctcacctactgggagagcgccgcccggatgatcgccgatgtgtccaagtc 472
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaa 616
||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 473 ggacaagatcgtcgtcgagaagtccaccgtccccgtcaagaccgcagaggccattgagaa 532
Query: 617 gatcttgacccacnncagcaagggcatcaactaccagatcct 658
|||| |||||||| |||||||||||||||||||||||||||
Sbjct: 533 gatcctgacccacaacagcaagggcatcaactaccagatcct 574
>gb|BM816400.1|BM816400 HB01H04_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB01H04_T3.ab1 similar to Hydrogen
dehydrogenase,Phosphoglycerate dehydrogenase,Glucose
1-dehydrogenase,Hydrogenase,Cytochrome-c3
hydrogenase,GDP-mannose 6-dehydrogenase,UDP-glucose
6-dehydrogenase,Glycine dehydrogenase,Transferred entry:
1.18.99.1,, mRNA sequence
Length = 837
Score = 618 bits (312), Expect = e-176
Identities = 424/462 (91%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 113 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctgt 172
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| |||||||| || || || ||||||||||||||||||||
Sbjct: 173 cattgccatcaagtgcccagcaattgaggtggtggtcgtcgacatctccaagccccgcat 232
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 233 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 292
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 293 ggcctgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgaggc 352
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||||
Sbjct: 353 cgacatcatcttcgtctccgtcaacacccccaccaagacccgtggtctgggagccggcaa 412
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct: 413 ggctgccgacctcacctactgggagagcgccgcccggatgatcgccgatgtgtccaagtc 472
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaa 616
|| |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 473 ggataagatcgtcgtcgagaagtccaccgtccccgtcaagaccgcagaggccattgagaa 532
Query: 617 gatcttgacccacnncagcaagggcatcaactaccagatcct 658
|||| |||||||| |||||||||||||||||||||||||||
Sbjct: 533 gatcctgacccacaacagcaagggcatcaactaccagatcct 574
>gb|BM816401.1|BM816401 HC107A12_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC107A12_SK.ab1 similar to Hydrogen
dehydrogenase,Phosphoglycerate dehydrogenase,Glucose
1-dehydrogenase,Hydrogenase,Cytochrome-c3
hydrogenase,GDP-mannose 6-dehydrogenase,UDP-glucose
6-dehydrogenase,Glycine dehydrogenase,Transferred entry:
1.18.99.1,, mRNA sequence
Length = 842
Score = 618 bits (312), Expect = e-176
Identities = 424/462 (91%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 129 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctgt 188
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| |||||||| || || || ||||||||||||||||||||
Sbjct: 189 cattgccatcaagtgcccagcaattgaggtggtggtcgtcgacatctccaagccccgcat 248
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 249 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 308
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 309 ggcctgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgaggc 368
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||||
Sbjct: 369 cgacatcatcttcgtctccgtcaacacccccaccaagacccgtggtctgggagccggcaa 428
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct: 429 ggctgccgacctcacctactgggagagcgccgcccggatgatcgccgatgtgtccaagtc 488
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaa 616
|| |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 489 ggataagatcgtcgtcgagaagtccaccgtccccgtcaagaccgcagaggccattgagaa 548
Query: 617 gatcttgacccacnncagcaagggcatcaactaccagatcct 658
|||| |||||||| |||||||||||||||||||||||||||
Sbjct: 549 gatcctgacccacaacagcaagggcatcaactaccagatcct 590
>gb|BF616987.2|BF616987 HVSMEc0014C22f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0014C22f, mRNA sequence
Length = 765
Score = 613 bits (309), Expect = e-174
Identities = 423/462 (91%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 95 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctgt 154
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| |||||||| || || || ||||||||||||||||||||
Sbjct: 155 cattgccatcaagtgcccagcaattgaggtggtggtcgtcgacatctccaagccccgcat 214
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 215 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 274
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 275 ggcctgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgaggc 334
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||||
Sbjct: 335 cgacatcatcttcgtctccgtcaacacccccaccaagacccgtggtctgggagccggcaa 394
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
||||||||||||||||||||| |||||||| || || |||||||||||||| ||||||||
Sbjct: 395 ggctgccgacctcacctactgngagagcgccgcccggatgatcgccgatgtgtccaagtc 454
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaa 616
|| |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 455 ggataagatcgtcgtcgagaagtccaccgtccccgtcaagaccgcagaggccattgagaa 514
Query: 617 gatcttgacccacnncagcaagggcatcaactaccagatcct 658
|||| |||||||| |||||||||||||||||||||||||||
Sbjct: 515 gatcctgacccacaacagcaagggcatcaactaccagatcct 556
>gb|BI959946.1|BI959946 HVSMEn0022I18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022I18f, mRNA sequence
Length = 657
Score = 611 bits (308), Expect = e-173
Identities = 423/462 (91%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 96 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctgt 155
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| || ||||| || || || ||||||||||||||||||||
Sbjct: 156 cattgccatcaagtgcccagcaatggaggtggtggtcgtcgacatctccaagccccgcat 215
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 216 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 275
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 276 ggcctgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgaggc 335
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||||
Sbjct: 336 cgacatcatcttcgtctccgtcaacacccccaccaagacccgtggtctgggagccggcaa 395
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct: 396 ggctgccgacctcacctactgggagagcgccgcccggatgatcgccgatgtgtccaagtc 455
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaa 616
|| |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 456 ggataagatcgtcgtcgagaagtccaccgtccccgtcaagaccgcagaggccattgagaa 515
Query: 617 gatcttgacccacnncagcaagggcatcaactaccagatcct 658
|||| |||||||| |||||||||||||||||||||||||||
Sbjct: 516 gatcctgacccacaacagcaagggcatcaactaccagatcct 557
>gb|BQ467241.1|BQ467241 HS03C03r HS Hordeum vulgare subsp. vulgare cDNA clone HS03C03
5-PRIME, mRNA sequence
Length = 570
Score = 607 bits (306), Expect = e-172
Identities = 415/452 (91%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 119 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctgt 178
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| |||||||| || || || ||||||||||||||||||||
Sbjct: 179 cattgccatcaagtgcccagcaattgaggtggtggtcgtcgacatctccaagccccgcat 238
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 239 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 298
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 299 ggcctgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgaggc 358
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||||
Sbjct: 359 cgacatcatcttcgtctccgtcaacacccccaccaagacccgtggtctgggagccggcaa 418
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct: 419 ggctgccgacctcacctactgggagagcgccgcccggatgatcgccgatgtgtccaagtc 478
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaa 616
||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 479 ggacaagatcgtcgtcgagaagtccaccgtccccgtcaagaccgcagaggccattgagaa 538
Query: 617 gatcttgacccacnncagcaagggcatcaact 648
|||| |||||||| |||||||||||||||||
Sbjct: 539 gatcctgacccacaacagcaagggcatcaact 570
>gb|BQ463301.1|BQ463301 HI04L11r HI Hordeum vulgare subsp. vulgare cDNA clone HI04L11
5-PRIME, mRNA sequence
Length = 553
Score = 605 bits (305), Expect = e-172
Identities = 416/454 (91%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 100 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctgt 159
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| |||||||| || || || ||||||||||||||||||||
Sbjct: 160 cattgccatcaagtgcccagcaattgaggtggtggtcgtcgacatctccaagccccgcat 219
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 220 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 279
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 280 ggcctgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgaggc 339
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||||
Sbjct: 340 cgacatcatcttcgtctccgtcaacacccccaccaagacccgtggtctgggagccggcaa 399
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
||||||||||||||||||||| |||||||| || || |||||||||||||| ||||||||
Sbjct: 400 ggctgccgacctcacctactgngagagcgccgcccggatgatcgccgatgtgtccaagtc 459
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaa 616
||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 460 ggacaagatcgtcgtcgagaagtccaccgtccccgtcaagaccgcagaggccattgagaa 519
Query: 617 gatcttgacccacnncagcaagggcatcaactac 650
|||| |||||||| |||||||||||||||||||
Sbjct: 520 gatcctgacccacaacagcaagggcatcaactac 553
>gb|AL503349.1|AL503349 AL503349 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01M02T 5', mRNA sequence
Length = 700
Score = 599 bits (302), Expect = e-170
Identities = 423/464 (91%)
Strand = Plus / Plus
Query: 195 gacaagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggct 254
||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 6 gacaagatggtgaagatctgctgcatcggagctggctatgtcggcggcccaacaatggcc 65
Query: 255 gtcattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgc 314
||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct: 66 gtcattgccgtcaagtgcccagcaattgaggttgttgttgttgacatctccaagcctcgc 125
Query: 315 attgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtg 374
||||| || |||||||||||||| ||||| || |||||||| ||||||||||| |||||
Sbjct: 126 attgacgcttggaacagcgacacactcccaatttacgagcctggcctcgatgaggttgtc 185
Query: 375 aagcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgag 434
||| ||||||||||| ||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 186 aaggcgtgcaggggcaagaacctcttcttcagcactgacgtcgagaagcacgttgctgag 245
Query: 435 gctgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggc 494
|| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct: 246 gccgacatcatcttcgtctcagtgaacacccccaccaagacccgtggtctgggagccggc 305
Query: 495 aaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaag 554
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 306 aaggctgccgacctcacctactgggagagcgctgcccggatgatcgccgatgtgtccaag 365
Query: 555 tctgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgag 614
|| ||||||||||| || ||||||||||| |||||||||||||| || ||||| ||||||
Sbjct: 366 tccgacaagatcgtcgttgagaagtccactgtccctgtcaagactgcagaggccattgag 425
Query: 615 aagatcttgacccacnncagcaagggcatcaactaccagatcct 658
||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 426 aagatcttgactcacaacagcaagggcatcaactaccagatcct 469
>gb|AL505083.1|AL505083 AL505083 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07F10V 5', mRNA sequence
Length = 643
Score = 599 bits (302), Expect = e-170
Identities = 423/464 (91%)
Strand = Plus / Plus
Query: 195 gacaagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggct 254
||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 54 gacaagatggtgaagatctgctgcatcggagctggctatgtcggcggcccaacaatggcc 113
Query: 255 gtcattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgc 314
||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct: 114 gtcattgccgtcaagtgcccagcaattgaggttgttgttgttgacatctccaagcctcgc 173
Query: 315 attgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtg 374
||||| || |||||||||||||| ||||| || |||||||| ||||||||||| |||||
Sbjct: 174 attgacgcttggaacagcgacacactcccaatttacgagcctggcctcgatgaggttgtc 233
Query: 375 aagcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgag 434
||| ||||||||||| ||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 234 aaggcgtgcaggggcaagaacctcttcttcagcactgacgtcgagaagcacgttgctgag 293
Query: 435 gctgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggc 494
|| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct: 294 gccgacatcatcttcgtctcagtgaacacccccaccaagacccgtggtctgggagccggc 353
Query: 495 aaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaag 554
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 354 aaggctgccgacctcacctactgggagagcgctgcccggatgatcgccgatgtgtccaag 413
Query: 555 tctgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgag 614
|| ||||||||||| || ||||||||||| |||||||||||||| || ||||| ||||||
Sbjct: 414 tccgacaagatcgtcgttgagaagtccactgtccctgtcaagactgcagaggccattgag 473
Query: 615 aagatcttgacccacnncagcaagggcatcaactaccagatcct 658
||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 474 aagatcttgactcacaacagcaagggcatcaactaccagatcct 517
>gb|AL506436.1|AL506436 AL506436 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03B24T 5',
mRNA sequence
Length = 700
Score = 599 bits (302), Expect = e-170
Identities = 423/464 (91%)
Strand = Plus / Plus
Query: 195 gacaagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggct 254
||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 77 gacaagatggtgaagatctgctgcatcggagctggctatgtcggcggcccaacaatggcc 136
Query: 255 gtcattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgc 314
||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct: 137 gtcattgccgtcaagtgcccagcaattgaggttgttgttgttgacatctccaagcctcgc 196
Query: 315 attgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtg 374
||||| || |||||||||||||| ||||| || |||||||| ||||||||||| |||||
Sbjct: 197 attgacgcttggaacagcgacacactcccaatttacgagcctggcctcgatgaggttgtc 256
Query: 375 aagcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgag 434
||| ||||||||||| ||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 257 aaggcgtgcaggggcaagaacctcttcttcagcactgacgtcgagaagcacgttgctgag 316
Query: 435 gctgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggc 494
|| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct: 317 gccgacatcatcttcgtctcagtgaacacccccaccaagacccgtggtctgggagccggc 376
Query: 495 aaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaag 554
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 377 aaggctgccgacctcacctactgggagagcgctgcccggatgatcgccgatgtgtccaag 436
Query: 555 tctgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgag 614
|| ||||||||||| || ||||||||||| |||||||||||||| || ||||| ||||||
Sbjct: 437 tccgacaagatcgtcgttgagaagtccactgtccctgtcaagactgcagaggccattgag 496
Query: 615 aagatcttgacccacnncagcaagggcatcaactaccagatcct 658
||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 497 aagatcttgactcacaacagcaagggcatcaactaccagatcct 540
>gb|BJ463791.1|BJ463791 BJ463791 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30i06 5', mRNA sequence
Length = 677
Score = 599 bits (302), Expect = e-170
Identities = 423/464 (91%)
Strand = Plus / Plus
Query: 195 gacaagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggct 254
||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 68 gacaagatggtgaagatctgctgcatcggagctggctatgtcggcggcccaacaatggcc 127
Query: 255 gtcattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgc 314
||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct: 128 gtcattgccgtcaagtgcccagcaattgaggttgttgttgttgacatctccaagcctcgc 187
Query: 315 attgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtg 374
||||| || |||||||||||||| ||||| || |||||||| ||||||||||| |||||
Sbjct: 188 attgacgcttggaacagcgacacactcccaatttacgagcctggcctcgatgaggttgtc 247
Query: 375 aagcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgag 434
||| ||||||||||| ||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 248 aaggcgtgcaggggcaagaacctcttcttcagcactgacgtcgagaagcacgttgctgag 307
Query: 435 gctgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggc 494
|| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct: 308 gccgacatcatcttcgtctcagtgaacacccccaccaagacccgtggtctgggagccggc 367
Query: 495 aaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaag 554
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 368 aaggctgccgacctcacctactgggagagcgctgcccggatgatcgccgatgtgtccaag 427
Query: 555 tctgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgag 614
|| ||||||||||| || ||||||||||| |||||||||||||| || ||||| ||||||
Sbjct: 428 tccgacaagatcgtcgttgagaagtccactgtccctgtcaagactgcagaggccattgag 487
Query: 615 aagatcttgacccacnncagcaagggcatcaactaccagatcct 658
||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 488 aagatcttgactcacaacagcaagggcatcaactaccagatcct 531
>gb|CA016350.1|CA016350 HV09D04u HV Hordeum vulgare subsp. vulgare cDNA clone HV09D04
3-PRIME, mRNA sequence
Length = 580
Score = 599 bits (302), Expect = e-170
Identities = 423/464 (91%)
Strand = Plus / Plus
Query: 195 gacaagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggct 254
||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 77 gacaagatggtgaagatctgctgcatcggagctggctatgtcggcggcccaacaatggcc 136
Query: 255 gtcattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgc 314
||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct: 137 gtcattgccgtcaagtgcccagcaattgaggttgttgttgttgacatctccaagcctcgc 196
Query: 315 attgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtg 374
||||| || |||||||||||||| ||||| || |||||||| ||||||||||| |||||
Sbjct: 197 attgacgcttggaacagcgacacactcccaatttacgagcctggcctcgatgaggttgtc 256
Query: 375 aagcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgag 434
||| ||||||||||| ||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 257 aaggcgtgcaggggcaagaacctcttcttcagcactgacgtcgagaagcacgttgctgag 316
Query: 435 gctgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggc 494
|| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct: 317 gccgacatcatcttcgtctcagtgaacacccccaccaagacccgtggtctgggagccggc 376
Query: 495 aaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaag 554
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 377 aaggctgccgacctcacctactgggagagcgctgcccggatgatcgccgatgtgtccaag 436
Query: 555 tctgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgag 614
|| ||||||||||| || ||||||||||| |||||||||||||| || ||||| ||||||
Sbjct: 437 tccgacaagatcgtcgttgagaagtccactgtccctgtcaagactgcagaggccattgag 496
Query: 615 aagatcttgacccacnncagcaagggcatcaactaccagatcct 658
||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 497 aagatcttgactcacaacagcaagggcatcaactaccagatcct 540
>gb|CA025152.1|CA025152 HZ51F19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51F19
5-PRIME, mRNA sequence
Length = 597
Score = 599 bits (302), Expect = e-170
Identities = 423/464 (91%)
Strand = Plus / Plus
Query: 195 gacaagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggct 254
||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 76 gacaagatggtgaagatctgctgcatcggagctggctatgtcggcggcccaacaatggcc 135
Query: 255 gtcattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgc 314
||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct: 136 gtcattgccgtcaagtgcccagcaattgaggttgttgttgttgacatctccaagcctcgc 195
Query: 315 attgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtg 374
||||| || |||||||||||||| ||||| || |||||||| ||||||||||| |||||
Sbjct: 196 attgacgcttggaacagcgacacactcccaatttacgagcctggcctcgatgaggttgtc 255
Query: 375 aagcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgag 434
||| ||||||||||| ||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 256 aaggcgtgcaggggcaagaacctcttcttcagcactgacgtcgagaagcacgttgctgag 315
Query: 435 gctgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggc 494
|| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct: 316 gccgacatcatcttcgtctcagtgaacacccccaccaagacccgtggtctgggagccggc 375
Query: 495 aaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaag 554
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 376 aaggctgccgacctcacctactgggagagcgctgcccggatgatcgccgatgtgtccaag 435
Query: 555 tctgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgag 614
|| ||||||||||| || ||||||||||| |||||||||||||| || ||||| ||||||
Sbjct: 436 tccgacaagatcgtcgttgagaagtccactgtccctgtcaagactgcagaggccattgag 495
Query: 615 aagatcttgacccacnncagcaagggcatcaactaccagatcct 658
||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 496 aagatcttgactcacaacagcaagggcatcaactaccagatcct 539
>gb|BI957579.1|BI957579 HVSMEn0010D11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010D11f, mRNA sequence
Length = 624
Score = 581 bits (293), Expect = e-164
Identities = 418/459 (91%), Gaps = 1/459 (0%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||
Sbjct: 114 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccg-cggtggctgt 172
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| |||||||| || || || ||||||||||||||||||||
Sbjct: 173 cattgccatcaagtgcccagcaattgaggtggtggtcgtcgacatctccaagccccgcat 232
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 233 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 292
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 293 ggcctgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgaggc 352
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||||
Sbjct: 353 cgacatcatcttcgtctccgtcaacacccccaccaagacccgtggtctgggagccggcaa 412
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct: 413 ggctgccgacctcacctactgggagagcgccgcccggatgatcgccgatgtgtccaagtc 472
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaa 616
|| |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 473 ggataagatcgtcgtcgagaagtccaccgtccccgtcaagaccgcagaggccattgagaa 532
Query: 617 gatcttgacccacnncagcaagggcatcaactaccagat 655
|||| |||||||| ||||||||||||||||||||||||
Sbjct: 533 gatcctgacccacaacagcaagggcatcaactaccagat 571
>gb|BM442821.2|BM442821 EBro02_SQ001_G08_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ001_G08 5', mRNA sequence
Length = 530
Score = 581 bits (293), Expect = e-164
Identities = 398/433 (91%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 92 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctgt 151
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| |||||||| || || || ||||||||||||||||||||
Sbjct: 152 cattgccatcaagtgcccagcaattgaggtggtggtcgtcgacatctccaagccccgcat 211
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 212 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 271
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 272 ggcctgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgaggc 331
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||||
Sbjct: 332 cgacatcatcttcgtctccgtcaacacccccaccaagacccgtggtctgggagccggcaa 391
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct: 392 ggctgccgacctcacctactgggagagcgccgcccggatgatcgccgatgtgtccaagtc 451
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaa 616
||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 452 ggacaagatcgtcgtcgagaagtccaccgtccccgtcaagaccgcagaggccattgagaa 511
Query: 617 gatcttgacccac 629
|||| ||||||||
Sbjct: 512 gatcctgacccac 524
>gb|CA017709.1|CA017709 HV05P24r HV Hordeum vulgare subsp. vulgare cDNA clone HV05P24
5-PRIME, mRNA sequence
Length = 500
Score = 579 bits (292), Expect = e-164
Identities = 413/454 (90%)
Strand = Plus / Plus
Query: 195 gacaagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggct 254
||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 47 gacaagatggtgaagatctgctgcatcggagctggctatgtcggcggcccaacaatggcc 106
Query: 255 gtcattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgc 314
||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct: 107 gtcattgccgtcaagtgcccagcaattgaggttgttgttgttgacatctccaagcctcgc 166
Query: 315 attgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtg 374
||||| || |||||||||||||| ||||| || |||||||| ||||||||||| |||||
Sbjct: 167 attgacgcttggaacagcgacacactcccaatttacgagcctggcctcgatgaggttgtc 226
Query: 375 aagcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgag 434
||| ||||||||||| ||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 227 aaggcgtgcaggggcaagaacctcttcttcagcactgacgtcgagaagcacgttgctgag 286
Query: 435 gctgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggc 494
|| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct: 287 gccgacatcatcttcgtctcagtgaacacccccaccaagacccgtggtctgggagccggc 346
Query: 495 aaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaag 554
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 347 aaggctgccgacctcacctactgggagagcgctgcccggatgatcgccgatgtgtccaag 406
Query: 555 tctgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgag 614
|| ||||||||||| || ||||||||||| |||||||||||||| || ||||| ||||||
Sbjct: 407 tccgacaagatcgtcgttgagaagtccactgtccctgtcaagactgcagaggccattgag 466
Query: 615 aagatcttgacccacnncagcaagggcatcaact 648
||||||||||| ||| |||||||||||||||||
Sbjct: 467 aagatcttgactcacaacagcaagggcatcaact 500
>gb|BQ760165.1|BQ760165 EBpi07_SQ003_K12_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ003_K12 5', mRNA sequence
Length = 514
Score = 541 bits (273), Expect = e-152
Identities = 372/405 (91%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 108 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctgt 167
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| ||||| || || || || ||||||||||||||||||||
Sbjct: 168 cattgccatcaagtgcccagcaattgaagtggtggtcgtcgacatctccaagccccgcat 227
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 228 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 287
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 288 ggcctgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgaggc 347
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||||
Sbjct: 348 cgacatcatcttcgtctccgtcaacacccccaccaagacccgtggtctgggagccggcaa 407
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct: 408 ggctgccgacctcacctactgggagagcgccgcccggatgatcgccgatgtgtccaagtc 467
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgc 601
||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 468 ggacaagatcgtcgtcgagaagtccaccgtccccgtcaagaccgc 512
>gb|BI959152.1|BI959152 HVSMEn0018G12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018G12f, mRNA sequence
Length = 666
Score = 539 bits (272), Expect = e-152
Identities = 415/462 (89%), Gaps = 1/462 (0%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||
Sbjct: 108 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatgggtgg 167
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| |||||||| || || || ||||||||||||||||||||
Sbjct: 168 cattgccatcaagtgcccagcaattgaggtggtggtcgtcgacatctccaagccccgcat 227
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 228 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 287
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 288 ggcctgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgaggc 347
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
||||||||||||||||| || ||||||||||||||||||||||| || ||||| ||||
Sbjct: 348 cgacatcatcttcgtctccgtcaacacccccaccaagacccgtggtctgggagcccgcaa 407
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct: 408 ggctgccgacctcacctactgggagagcgccgcccggatgatcgccgatgtgtccaagtc 467
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaa 616
|| |||||| | |||||| | ||||||||||| ||| ||||||| ||||| ||||||||
Sbjct: 468 ggataagatcctcgtcgaggaatccaccgtccccgtccagaccgcagaggccattgagaa 527
Query: 617 gatcttgacccacnncagcaagggcatcaactaccagatcct 658
|||| |||||| | |||||||||| ||||||||||||||||
Sbjct: 528 gatcctgaccc-caacagcaagggcgtcaactaccagatcct 568
>gb|BF619636.2|BF619636 HVSMEc0008A14f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0008A14f, mRNA sequence
Length = 696
Score = 525 bits (265), Expect = e-148
Identities = 370/405 (91%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 89 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctgt 148
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| |||||||| || || || ||||||||||||||||||||
Sbjct: 149 cattgccatcaagtgcccagcaattgaggtggtggtcgtcgacatctccaagccccgcat 208
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 209 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 268
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 269 ggcctgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgaggc 328
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||||
Sbjct: 329 cgacatcatcttcgtctccgtcaacacccccaccaagacccgtggtctgggagccggcaa 388
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct: 389 ggctgccgacctcacctactgggagagcgccgcccggatgatcgccgatgtgtccaagtc 448
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgc 601
|| || |||| |||||||||||||||||||| |||||||||||
Sbjct: 449 ggataaaatcggcgtcgagaagtccaccgtccccgtcaagaccgc 493
>gb|BF260772.2|BF260772 HVSMEf0022O12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022O12f, mRNA sequence
Length = 882
Score = 511 bits (258), Expect = e-144
Identities = 412/464 (88%)
Strand = Plus / Plus
Query: 195 gacaagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggct 254
||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 67 gacaagatggtgaagatctgctgcatcggagctggctatgtcggcggcccaacaatggcc 126
Query: 255 gtcattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgc 314
||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct: 127 gtcattgccgtcaagtgcccagcaattgaggttgttgttgttgacatctccaagcctcgc 186
Query: 315 attgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtg 374
||||| || |||||||||||||| ||||| || |||||||| ||||||||||| |||||
Sbjct: 187 attgacgcttggaacagcgacacactcccaatttacgagcctggcctcgatgaggttgtc 246
Query: 375 aagcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgag 434
||| ||||||||||| ||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 247 aaggcgtgcaggggcaagaacctcttcttcagcactgacgtcgagaagcacgttgctgag 306
Query: 435 gctgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggc 494
|| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct: 307 gccgacatcatcttcgtctcagtgaacacccccaccaagacccgtggtctgggagccggc 366
Query: 495 aaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaag 554
||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||
Sbjct: 367 aaggctgccgacctcacctactgtgagagcgctgcccggatgatcgccgatgtgtccaag 426
Query: 555 tctgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgag 614
|| |||||||||| || || | | |||| | |||||||||||| || |||| |||||
Sbjct: 427 tccgacaagatcggcgttgacagggccactggccctgtcaagactgcagagggccttgag 486
Query: 615 aagatcttgacccacnncagcaagggcatcaactaccagatcct 658
||||||||||| ||| |||||||||| | | ||||||||||||
Sbjct: 487 aagatcttgactcacaacagcaagggcgtgacctaccagatcct 530
>gb|BG309280.1|BG309280 HVSMEc0006P01f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0006P01f, mRNA sequence
Length = 830
Score = 494 bits (249), Expect = e-138
Identities = 394/443 (88%)
Strand = Plus / Plus
Query: 216 tgcatcggtgctggctatgtcggtggcccaaccatggctgtcattgccctcaagtgccca 275
||||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||
Sbjct: 1 tgcatcggtgctggctacgtcggcggcccaacaatggctgtcattgccatcaagtgccca 60
Query: 276 gacattgaggttgtcgttgttgacatctccaagccccgcattgaggcctggaacagcgac 335
| |||||||| || || || ||||||||||||||||||||||| |||||||||||||||
Sbjct: 61 gcaattgaggtggtggtcgtcgacatctccaagccccgcattgacgcctggaacagcgac 120
Query: 336 accctcccgatctacgagcccggcctcgatgatgttgtgaagcagtgcaggggcaggaac 395
|||||||||||||||||||| ||||||||||||||||| ||| |||||||||| ||||
Sbjct: 121 accctcccgatctacgagcctggcctcgatgatgttgtcaaggcctgcaggggcaagaac 180
Query: 396 ctcttcttcagcactgatgttgagaagcacgtcgctgaggctgacatcatcttcgtctcg 455
||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 181 ctcttcttcagcactgatgttgagaagcatgtcgccgaggccgacatcatcttcgtctcc 240
Query: 456 gtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgacctcacctac 515
|| ||||||||||||||||||||||| || ||||| |||||||||||| |||||||||||
Sbjct: 241 gtcaacacccccaccaagacccgtggtctgggagccggcaaggctgccaacctcacctac 300
Query: 516 tgggagagcgctgctcgtatgatcgccgatgtctccaagtctgacaagatcgttgtcgag 575
|| |||||||| || || |||||||||||||| |||||||| || |||||||| ||||||
Sbjct: 301 tgagagagcgccgcccggatgatcgccgatgtgtccaagtcggataagatcgtcgtcgag 360
Query: 576 aagtccaccgtccctgtcaagaccgctgaggctattgagaagatcttgacccacnncagc 635
|| | |||||| || | |||||||| ||||| ||| | |||||| |||||||| ||||
Sbjct: 361 aaatgcaccgtgcccggaaagaccgcagaggccatttaaaagatcctgacccacaacagc 420
Query: 636 aagggcatcaactaccagatcct 658
|||||||| |||||||| |||||
Sbjct: 421 aagggcataaactaccaaatcct 443
>gb|CA003702.1|CA003702 HS15E20r HS Hordeum vulgare subsp. vulgare cDNA clone HS15E20
5-PRIME, mRNA sequence
Length = 476
Score = 460 bits (232), Expect = e-128
Identities = 321/351 (91%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 125 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctgt 184
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| |||||||| || || || ||||||||||||||||||||
Sbjct: 185 cattgccatcaagtgcccagcaattgaggtggtggtcgtcgacatctccaagccccgcat 244
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 245 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 304
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 305 ggcctgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgaggc 364
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||||
Sbjct: 365 cgacatcatcttcgtctccgtcaacacccccaccaagacccgtggtctgggagccggcaa 424
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgt 547
|||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 425 ggctgccgacctcacctactgggagagcgccngccggatgatcgccgatgt 475
>gb|CA021411.1|CA021411 HZ40A11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ40A11
5-PRIME, mRNA sequence
Length = 504
Score = 452 bits (228), Expect = e-126
Identities = 339/377 (89%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||| ||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 128 caagatggngaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctgt 187
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| |||||||| || || || |||| ||||||||||||
Sbjct: 188 cattgccatcaagtgcccagcaattgaggtggtggtcgtcgacaggggcaagccccgcat 247
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 248 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgncaa 307
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||
Sbjct: 308 ggcctgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgncgccgaggc 367
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||||
Sbjct: 368 cgacatcatcttcgtctccgtcaacacccccaccaagacccgtggtctgggagccggcaa 427
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct: 428 ggctgccgacctcacctactgggagagcgccgcccggatgatcgccgatgtgtccaagtc 487
Query: 557 tgacaagatcgttgtcg 573
||||||||||| ||||
Sbjct: 488 ggacaagatcgtcgtcg 504
>gb|CA019890.1|CA019890 HV13K02r HV Hordeum vulgare subsp. vulgare cDNA clone HV13K02
5-PRIME, mRNA sequence
Length = 443
Score = 434 bits (219), Expect = e-120
Identities = 294/319 (92%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 125 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctgt 184
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| |||||||| || || || ||||||||||||||||||||
Sbjct: 185 cattgccatcaagtgcccagcaattgaggtggtggtcgtcgacatctccaagccccgcat 244
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 245 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 304
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 305 ggcctgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgaggc 364
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||||
Sbjct: 365 cgacatcatcttcgtctccgtcaacacccccaccaagacccgtggtctgggagccggcaa 424
Query: 497 ggctgccgacctcacctac 515
|||||||||||||||||||
Sbjct: 425 ggctgccgacctcacctac 443
>gb|AL506993.1|AL506993 AL506993 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04N13T 5',
mRNA sequence
Length = 382
Score = 422 bits (213), Expect = e-117
Identities = 341/382 (89%), Gaps = 2/382 (0%)
Strand = Plus / Plus
Query: 210 atctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtcattgccctcaag 269
|||||||||||||| |||||||||||||| |||||||| |||| ||||||| | |||||
Sbjct: 1 atctgctgcatcggagctggctatgtcggcggcccaacantggccgtcattgncgtcaag 60
Query: 270 tgcccagacattgaggttgtcgttgttgacatctccaagccccgcattgaggcctggaac 329
|||||| ||||||||||| |||||||||||||||||||| |||||||| || ||||||
Sbjct: 61 tgcccancaattgaggttgttgttgttgacatctccaagcctcgcattgacgcttggaac 120
Query: 330 agcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaagcagtgcaggggc 389
|||||||| ||||| || |||||||| ||||||||||| ||||| ||| ||||||||||
Sbjct: 121 agcgacacactcccaatttacgagcctggcctcgatgaggttgtcaaggcgtgcaggggc 180
Query: 390 aggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgacatcatcttc 449
| ||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||
Sbjct: 181 aagaacctcttcttcagcactgacgtcgagaagcacgttgctgaggccgacatcatcttc 240
Query: 450 gtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgacctc 509
||||| |||||||||||||||||||||||||| || ||||| |||||||||| |||||||
Sbjct: 241 gtctcagtgaacacccccaccaagacccgtggtctgggagccggcaaggctgtcgacctc 300
Query: 510 acctactgggagag-cgctgctcgtatgat-cgccgatgtctccaagtctgacaagatcg 567
|||||||||||||| |||||| || ||||| ||||||||| |||||||| ||||||||||
Sbjct: 301 acctactgggagagccgctgcccggatgatccgccgatgtgtccaagtccgacaagatcg 360
Query: 568 ttgtcgagaagtccaccgtccc 589
| || ||||||||||| |||||
Sbjct: 361 tcgttgagaagtccactgtccc 382
>gb|BM816402.1|BM816402 HC108C02_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC108C02_SK.ab1 similar to Hydrogen
dehydrogenase,Phosphoglycerate dehydrogenase,Glucose
1-dehydrogenase,Hydrogenase,Cytochrome-c3
hydrogenase,GDP-mannose 6-dehydrogenase,UDP-glucose
6-dehydrogenase,Glycine dehydrogenase,Transferred entry:
1.18.99.1,, mRNA sequence
Length = 891
Score = 416 bits (210), Expect = e-115
Identities = 289/316 (91%)
Strand = Plus / Plus
Query: 343 cgatctacgagcccggcctcgatgatgttgtgaagcagtgcaggggcaggaacctcttct 402
||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||
Sbjct: 31 cgatctacgagcctggcctcgatgatgttgtcaaggcctgcaggggcaagaacctcttct 90
Query: 403 tcagcactgatgttgagaagcacgtcgctgaggctgacatcatcttcgtctcggtgaaca 462
|||||||||||||||||||||| ||||| ||||| ||||||||||||||||| || ||||
Sbjct: 91 tcagcactgatgttgagaagcatgtcgccgaggccgacatcatcttcgtctccgtcaaca 150
Query: 463 cccccaccaagacccgtgggcttggagctggcaaggctgccgacctcacctactgggaga 522
||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct: 151 cccccaccaagacccgtggtctgggagccggcaaggctgccgacctcacctactgggaga 210
Query: 523 gcgctgctcgtatgatcgccgatgtctccaagtctgacaagatcgttgtcgagaagtcca 582
|||| || || |||||||||||||| |||||||| || |||||||| |||||||||||||
Sbjct: 211 gcgccgcccggatgatcgccgatgtgtccaagtcggataagatcgtcgtcgagaagtcca 270
Query: 583 ccgtccctgtcaagaccgctgaggctattgagaagatcttgacccacnncagcaagggca 642
||||||| ||||||||||| ||||| |||||||||||| |||||||| |||||||||||
Sbjct: 271 ccgtccccgtcaagaccgcagaggccattgagaagatcctgacccacaacagcaagggca 330
Query: 643 tcaactaccagatcct 658
||||||||||||||||
Sbjct: 331 tcaactaccagatcct 346
>gb|BF616088.2|BF616088 HVSMEc0001N05f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0001N05f, mRNA sequence
Length = 577
Score = 408 bits (206), Expect = e-112
Identities = 403/464 (86%), Gaps = 4/464 (0%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 100 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctgt 159
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| ||||||||||| |||||||| || || || ||||||||||||||||||||
Sbjct: 160 cattgccatcaagtgcccaacaattgaggtggtggtcgtcgacatctccaagccccgcat 219
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 220 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 279
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||| ||||| ||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct: 280 ggcctgcatgggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgacgc 339
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
|||||||| ||||| | | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 340 cgacatcatgttcgtattcgacaacacccccaccaagacccgtggtctgggagccggcaa 399
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||||||||| |||| || |||||||| | || |||||||||||||| | ||||||
Sbjct: 400 ggctgccgaccttaccttatgcgagagcgccccccggatgatcgccgatgtgttcaagtc 459
Query: 557 tgacaagatcgttgtc-gagaagtccaccgt-ccctgtcaagaccgctgaggctattgag 614
|| |||| ||| ||| ||||||||||||| |||||| |||||||| ||||| |||||
Sbjct: 460 ggataagaacgtagtcaaagaagtccaccgtaccctgt-aagaccgcagaggccattgaa 518
Query: 615 aagatcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||| ||| ||| || | |||||||||||||||||||||
Sbjct: 519 aagatcctga-ccagaacaccttgggcatcaactaccagatcct 561
>gb|AL508901.1|AL508901 AL508901 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10C07V 5',
mRNA sequence
Length = 700
Score = 389 bits (196), Expect = e-107
Identities = 395/462 (85%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||| | || ||||||||||| |||||||| || ||||| ||
Sbjct: 99 caagatggtgaagatctgctgccttggggctggctatgttggtggccccacaatggcggt 158
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||| |||||||||||||| |||||| |||| || || || || ||| ||||| |||| ||
Sbjct: 159 catcgccctcaagtgccctgacattcaggtggttgtcgtagatatcaccaagtcccggat 218
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||| ||||| || || ||||| ||||| ||||| ||||| || |||||
Sbjct: 219 tgatgcctggaacagtgacacactgccaatctatgagcctggccttgatgaagtcgtgaa 278
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
||||||| | || | ||||||||||||||||| ||| |||||||||| || ||||||
Sbjct: 279 gcagtgccgtggaaagaacctcttcttcagcaatgacattgagaagcatgttagtgaggc 338
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
|||||| ||||| || ||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct: 339 tgacattatctttgtgtcggtaaacaccccaaccaagacccgtggtcttggagctggtaa 398
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||| || ||||| ||||||||||| || ||||| |||||||| ||||| |||| ||
Sbjct: 399 ggctgctgatctcacttactgggagagtgcagctcgcatgatcgctgatgtggccaaatc 458
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaa 616
||||||||||| |||||||||||||| || || |||||||| |||||||| ||||||||
Sbjct: 459 ggacaagatcgtggtcgagaagtccactgttccagtcaagactgctgaggcaattgagaa 518
Query: 617 gatcttgacccacnncagcaagggcatcaactaccagatcct 658
||||||||||||| |||||| |||||||||| |||||||||
Sbjct: 519 gatcttgacccacaacagcaatggcatcaacttccagatcct 560
>gb|BU997483.1|BU997483 HI08C03r HI Hordeum vulgare subsp. vulgare cDNA clone HI08C03
5-PRIME, mRNA sequence
Length = 564
Score = 389 bits (196), Expect = e-107
Identities = 395/462 (85%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||| | || ||||||||||| |||||||| || ||||| ||
Sbjct: 103 caagatggtgaagatctgctgccttggggctggctatgttggtggccccacaatggcggt 162
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||| |||||||||||||| |||||| |||| || || || || ||| ||||| |||| ||
Sbjct: 163 catcgccctcaagtgccctgacattcaggtggttgtcgtagatatcaccaagtcccggat 222
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||| ||||| || || ||||| ||||| ||||| ||||| || |||||
Sbjct: 223 tgatgcctggaacagtgacacactgccaatctatgagcctggccttgatgaagtcgtgaa 282
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
||||||| | || | ||||||||||||||||| ||| |||||||||| || ||||||
Sbjct: 283 gcagtgccgtggaaagaacctcttcttcagcaatgacattgagaagcatgttagtgaggc 342
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
|||||| ||||| || ||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct: 343 tgacattatctttgtgtcggtaaacaccccaaccaagacccgtggtcttggagctggtaa 402
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||| || ||||| ||||||||||| || ||||| |||||||| ||||| |||| ||
Sbjct: 403 ggctgctgatctcacttactgggagagtgcagctcgcatgatcgctgatgtggccaaatc 462
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaa 616
||||||||||| |||||||||||||| || || |||||||| |||||||| ||||||||
Sbjct: 463 ggacaagatcgtggtcgagaagtccactgttccagtcaagactgctgaggcaattgagaa 522
Query: 617 gatcttgacccacnncagcaagggcatcaactaccagatcct 658
||||||||||||| |||||| |||||||||| |||||||||
Sbjct: 523 gatcttgacccacaacagcaatggcatcaacttccagatcct 564
>gb|BI958896.1|BI958896 HVSMEn0017B09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017B09f, mRNA sequence
Length = 664
Score = 381 bits (192), Expect = e-104
Identities = 256/278 (92%)
Strand = Plus / Plus
Query: 381 tgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgac 440
|||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 15 tgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgaggccgac 74
Query: 441 atcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggct 500
|||||||||||||| || ||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 75 atcatcttcgtctccgtcaacacccccaccaagacccgtggtctgggagccggcaaggct 134
Query: 501 gccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgac 560
|||||||||||||||||||||||||| || || |||||||||||||| |||||||| ||
Sbjct: 135 gccgacctcacctactgggagagcgccgcccggatgatcgccgatgtgtccaagtcggat 194
Query: 561 aagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagatc 620
|||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 195 aagatcgtcgtcgagaagtccaccgtccccgtcaagaccgcagaggccattgagaagatc 254
Query: 621 ttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||| |||||||||||||||||||||||||||
Sbjct: 255 ctgacccacaacagcaagggcatcaactaccagatcct 292
>gb|BF628180.2|BF628180 HVSMEb0003F15f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0003F15f, mRNA sequence
Length = 525
Score = 377 bits (190), Expect = e-103
Identities = 386/452 (85%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||| | || ||||||||||| |||||||| || ||||| ||
Sbjct: 71 caagatggtgaagatctgctgccttggggctggctatgttggtggccccacaatggcggt 130
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||| |||||||||||||| |||||| |||| || || || || ||| ||||| |||| ||
Sbjct: 131 catcgccctcaagtgccctgacattcaggtggttgtcgtagatatcaccaagtcccggat 190
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||| ||||| || || ||||| ||||| ||||| ||||| || |||||
Sbjct: 191 tgatgcctggaacagtgacacactgccaatctatgagcctggccttgatgaagtcgtgaa 250
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
||||||| | || | ||||||||||||||||| ||| |||||||||| || ||||||
Sbjct: 251 gcagtgccgtggaaagaacctcttcttcagcaatgacattgagaagcatgttagtgaggc 310
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
|||||| ||||| || ||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct: 311 tgacattatctttgtgtcggtaaacaccccaaccaagacccgtggtcttggagctggtaa 370
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||| || ||||| ||||||||||| || ||||| |||||||| ||||| |||| ||
Sbjct: 371 ggctgctgatctcacttactgggagagtgcagctcgcatgatcgctgatgtggccaaatc 430
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaa 616
||||||||||| |||||||||||||| || || |||||||| |||||||| ||||||||
Sbjct: 431 ggacaagatcgtggtcgagaagtccactgttccagtcaagactgctgaggcaattgagaa 490
Query: 617 gatcttgacccacnncagcaagggcatcaact 648
||||||||||||| |||||| ||||||||||
Sbjct: 491 gatcttgacccacaacagcaatggcatcaact 522
>gb|AV916045.1|AV916045 AV916045 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1d19 5', mRNA sequence
Length = 602
Score = 375 bits (189), Expect = e-102
Identities = 392/459 (85%), Gaps = 1/459 (0%)
Strand = Plus / Plus
Query: 201 atggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtcatt 260
|||||||||||||||||| | || ||||||||||| |||||||| || ||||| |||||
Sbjct: 104 atggtgaagatctgctgccttggggctggctatgttggtggccccacaatggcggtcatc 163
Query: 261 gccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcattgag 320
|||||||||||||| |||||| |||| || || || || ||| ||||| |||| |||||
Sbjct: 164 gccctcaagtgccctgacattcaggtggttgtcgtagatatcaccaagtcccggattgat 223
Query: 321 gcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaagcag 380
||||||||||| ||||| || || ||||| ||||| ||||| ||||| || |||||||||
Sbjct: 224 gcctggaacagtgacacactgccaatctatgagcctggccttgatgaagtcgtgaagcag 283
Query: 381 tgcaggggca-ggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctga 439
||| | || | |||||||||||||||||| ||| |||||||||| || |||||||||
Sbjct: 284 tgccgtggaaaggaacctcttcttcagcaatgacattgagaagcatgttagtgaggctga 343
Query: 440 catcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggc 499
||| ||||| || ||||| |||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 344 cattatctttgtgtcggtaaacaccccaaccaagacccgtggtcttggagctggtaaggc 403
Query: 500 tgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctga 559
||| || ||||| ||||||||||| || ||||| |||||||| ||||| |||| || ||
Sbjct: 404 tgctgatctcacttactgggagagtgcagctcgcatgatcgctgatgtggccaaatcgga 463
Query: 560 caagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagat 619
||||||||| |||||||||||||| || || |||||||| |||||||| |||||||||||
Sbjct: 464 caagatcgtggtcgagaagtccactgttccagtcaagactgctgaggcaattgagaagat 523
Query: 620 cttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||| |||||| |||||||||| |||||||||
Sbjct: 524 cttgacccacaacagcaatggcatcaacttccagatcct 562
>gb|CA026863.1|CA026863 HZ57D02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57D02
5-PRIME, mRNA sequence
Length = 395
Score = 369 bits (186), Expect = e-101
Identities = 252/274 (91%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 122 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctgt 181
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| |||||||| || || || ||||||||||||||||||||
Sbjct: 182 cattgccatcaagtgcccagcaattgaggtggtggtcgtcgacatctccaagccccgcat 241
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 242 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 301
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 302 ggcctgcaggggcaagaacctcttcttcagcactgatgttgagaagcatgtcgccgaggc 361
Query: 437 tgacatcatcttcgtctcggtgaacacccccacc 470
||||||||||||||||| || ||||||||||||
Sbjct: 362 cgacatcatcttcgtctccgtcaacacccccacc 395
>gb|BF261636.3|BF261636 HV_CEa0001M22f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0001M22f, mRNA sequence
Length = 603
Score = 343 bits (173), Expect = 5e-093
Identities = 338/389 (86%), Gaps = 3/389 (0%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 114 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctga 173
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| ||||| || || | || ||||| ||||||||||||||
Sbjct: 174 cattgccatcaagtgcccagcaattgacgtggtgggcgtagacatgtccaagccccgcat 233
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 234 tgacacctggaacagtgacaccctcccgatctacgagcctggcctcgatgatgttgtcaa 293
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| |||||| ||||||||||||||||||||||||| ||||| || ||
Sbjct: 294 ggcctgcaggggcatgaacct-gtcttcagcactgatgttgagaagcatgtcgccgaagc 352
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
||||| ||||||||||| || || |||| ||||||||||||||| || ||||| ||||
Sbjct: 353 cgacataatcttcgtctccgttaaaaccctcaccaagacccgtggtctgggagc-agcaa 411
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||| |||||||||||||||||||||||| | || |||||| |||||| | ||||||
Sbjct: 412 ggcttgcgacctcacctactgggagagcgcctcccg-atgatctgcgatgtgttcaagtc 470
Query: 557 tgacaagatcgttgtcgagaagtccaccg 585
||||||||||| ||| ||||||||||||
Sbjct: 471 ggacaagatcgtcgtcaagaagtccaccg 499
>gb|CA024930.1|CA024930 HZ50L17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50L17
5-PRIME, mRNA sequence
Length = 502
Score = 341 bits (172), Expect = 2e-092
Identities = 359/422 (85%)
Strand = Plus / Plus
Query: 237 ggtggcccaaccatggctgtcattgccctcaagtgcccagacattgaggttgtcgttgtt 296
|||||||| || ||||| ||||| |||||||||||||| |||||| |||| || || ||
Sbjct: 1 ggtggccccacaatggcggtcatcgccctcaagtgccctgacattcaggtggttgtcgta 60
Query: 297 gacatctccaagccccgcattgaggcctggaacagcgacaccctcccgatctacgagccc 356
|| ||| ||||| |||| ||||| ||||||||||| ||||| || || ||||| |||||
Sbjct: 61 gatatcaccaagtcccggattgatgcctggaacagtgacacactgccaatctatgagcct 120
Query: 357 ggcctcgatgatgttgtgaagcagtgcaggggcaggaacctcttcttcagcactgatgtt 416
||||| ||||| || |||||||||||| | || | ||||||||||||||||| ||| ||
Sbjct: 121 ggccttgatgaagtcgtgaagcagtgccgtggaaagaacctcttcttcagcaatgacatt 180
Query: 417 gagaagcacgtcgctgaggctgacatcatcttcgtctcggtgaacacccccaccaagacc 476
|||||||| || |||||||||||| ||||| || ||||| |||||||| |||||||||
Sbjct: 181 gagaagcatgttagtgaggctgacattatctttgtgtcggtaaacaccccaaccaagacc 240
Query: 477 cgtgggcttggagctggcaaggctgccgacctcacctactgggagagcgctgctcgtatg 536
||||| ||||||||||| |||||||| || ||||| ||||||||||| || ||||| |||
Sbjct: 241 cgtggtcttggagctggtaaggctgctgatctcacttactgggagagtgcagctcgcatg 300
Query: 537 atcgccgatgtctccaagtctgacaagatcgttgtcgagaagtccaccgtccctgtcaag 596
||||| ||||| |||| || ||||||||||| |||||||||||||| || || ||||||
Sbjct: 301 atcgctgatgtggccaaatcggacaagatcgtggtcgagaagtccactgttccagtcaag 360
Query: 597 accgctgaggctattgagaagatcttgacccacnncagcaagggcatcaactaccagatc 656
|| |||||||| ||||||||||||||||||||| |||||| |||||||||| |||||||
Sbjct: 361 actgctgaggcaattgagaagatcttgacccacaacagcaatggcatcaacttccagatc 420
Query: 657 ct 658
||
Sbjct: 421 ct 422
>gb|BM097230.2|BM097230 EBpi07_SQ002_M24_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ002_M24 5', mRNA sequence
Length = 545
Score = 339 bits (171), Expect = 8e-092
Identities = 373/441 (84%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||| | || ||||||||||| |||||||| || ||||| ||
Sbjct: 103 caagatggtgaagatctgctgccttggggctggctatgttggtggccccacaatggcggt 162
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||| |||||||||||||| |||||| |||| || || || || ||| ||||| |||| ||
Sbjct: 163 catcgccctcaagtgccctgacattcaggtggttgtcgtagatatcaccaagtcccggat 222
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
| | ||||||||||| ||||| || || ||||| ||||| ||||| ||||| || |||||
Sbjct: 223 ttatgcctggaacagtgacacactgccaatctatgagcctggccttgatgaagtcgtgaa 282
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
||||||| | || | ||||||||||||||||| ||| |||||||||| || ||||||
Sbjct: 283 gcagtgccgtggaaagaacctcttcttcagcaatgacattgagaagcatgttagtgaggc 342
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
|||||| ||||| || ||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct: 343 tgacattatctttgtgtcggtaaacaccccaaccaagacccgtggtcttggagctggtaa 402
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
||||| || ||||| ||||||||||| || ||||| |||||||| ||||| |||| ||
Sbjct: 403 agctgctgatctcacttactgggagagtgcagctcgcatgatcgctgatgtggccaaatc 462
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaa 616
||||||||||| |||||||||||||| || || |||||||| ||||||| ||||||||
Sbjct: 463 ggacaagatcgtggtcgagaagtccactgttccagtcaagactgctgaggaaattgagaa 522
Query: 617 gatcttgacccacnncagcaa 637
||||||||||||| ||||||
Sbjct: 523 gatcttgacccacaacagcaa 543
>gb|AL507609.1|AL507609 AL507609 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06F10V 5',
mRNA sequence
Length = 661
Score = 331 bits (167), Expect = 2e-089
Identities = 373/442 (84%), Gaps = 1/442 (0%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||| | || ||||||||||| |||||||| || ||||| ||
Sbjct: 107 caagatggtgaagatctgctgccttggggctggctatgttggtggccccacaatggcggt 166
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||| |||||||||||||| |||||| |||| || || || || ||| ||||| |||| ||
Sbjct: 167 catcgccctcaagtgccctgacattcaggtggttgtcgtagatatcaccaagtcccggat 226
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||| ||||| || || ||||| ||||| ||||| ||||| || | |||
Sbjct: 227 tgatgcctggaacagtgacacactgccaatctatgagcctggccttgatgaagtcgngaa 286
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
||||||| | || | |||||||||||||| || ||| |||||||||| || ||||||
Sbjct: 287 gcagtgccgtggaaagaacctcttcttcancaatgacattgagaagcatgttagtgaggc 346
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
|||||| ||||| || ||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct: 347 tgacattatctttgtgtcggtaaacaccccaaccaagacccgtggtcttggagctggtaa 406
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||| || ||||| ||||||||||| || ||||| |||||||| ||||| |||| ||
Sbjct: 407 ggctgctgatctcacttactgggagagtgcagctcgcatgatcgctgatgtggccaaatc 466
Query: 557 tgacaagat-cgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgaga 615
|||||||| ||| || ||||||||||| || || |||||||| |||||||| |||||||
Sbjct: 467 ggacaagatccgtggtngagaagtccactgttccagtcaagactgctgaggcaattgaga 526
Query: 616 agatcttgacccacnncagcaa 637
|||||||||||||| ||||||
Sbjct: 527 agatcttgacccacaacagcaa 548
>gb|BJ463675.1|BJ463675 BJ463675 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30a15 5', mRNA sequence
Length = 604
Score = 325 bits (164), Expect = 1e-087
Identities = 339/398 (85%)
Strand = Plus / Plus
Query: 261 gccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcattgag 320
|||||||||||||| |||||| |||| || || || || ||| ||||| |||| |||||
Sbjct: 28 gccctcaagtgccctgacattcaggtggttgtcgtagatatcaccaagtcccggattgat 87
Query: 321 gcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaagcag 380
||||||||||| ||||| || || ||||| ||||| ||||| ||||| || |||||||||
Sbjct: 88 gcctggaacagtgacacactgccaatctatgagcctggccttgatgaagtcgtgaagcag 147
Query: 381 tgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgac 440
||| | || | ||||||||||||||||| ||| |||||||||| || ||||||||||
Sbjct: 148 tgccgtggaaagaacctcttcttcagcaatgacattgagaagcatgttagtgaggctgac 207
Query: 441 atcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggct 500
|| ||||| || ||||| |||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 208 attatctttgtgtcggtaaacaccccaaccaagacccgtggtcttggagctggtaaggct 267
Query: 501 gccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgac 560
|| || ||||| ||||||||||| || ||||| |||||||| ||||| |||| || |||
Sbjct: 268 gctgatctcacttactgggagagtgcagctcgcatgatcgctgatgtggccaaatcggac 327
Query: 561 aagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagatc 620
|||||||| |||||||||||||| || || |||||||| |||||||| ||||||||||||
Sbjct: 328 aagatcgtggtcgagaagtccactgttccagtcaagactgctgaggcaattgagaagatc 387
Query: 621 ttgacccacnncagcaagggcatcaactaccagatcct 658
||||||||| |||||| |||||||||| |||||||||
Sbjct: 388 ttgacccacaacagcaatggcatcaacttccagatcct 425
>gb|AL508647.1|AL508647 AL508647 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09G05V 5',
mRNA sequence
Length = 700
Score = 313 bits (158), Expect = 4e-084
Identities = 341/402 (84%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||| | || ||||||||||| |||||||| || ||||| ||
Sbjct: 228 caagatggtgaagatctgctgccttggggctggctatgttggtggccccacaatggcggt 287
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||| |||||||||||||| |||||| |||| || || || || ||| ||||| |||| ||
Sbjct: 288 catcgccctcaagtgccctgacattcaggtggttgtcgtagatatcaccaagtcccggat 347
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||| ||||| || || ||||| ||||| ||||| ||||| || |||||
Sbjct: 348 tgatgcctggaacagtgacacactgccaatctatgagcctggccttgatgaagtcgtgaa 407
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
||||||| | || | ||||||||||||||||| ||| |||||||||| || ||||||
Sbjct: 408 gcagtgccgtggaaagaacctcttcttcagcaatgacattgagaagcatgttagtgaggc 467
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
|||||| ||||| || ||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct: 468 tgacattatctttgtgtcggtaaacaccccaaccaagacccgtggtcttggagctggtaa 527
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||| || ||||| ||||||||||| || ||||| |||||||| ||||| |||| ||
Sbjct: 528 ggctgctgatctcacttactgggagagtgcagctcgcatgatcgctgatgtggccaaatc 587
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaagac 598
||||||||||| |||||||||||||| || || ||||||||
Sbjct: 588 ggacaagatcgtggtcgagaagtccactgttccagtcaagac 629
>gb|BJ464802.1|BJ464802 BJ464802 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36b11 5', mRNA sequence
Length = 685
Score = 309 bits (156), Expect = 7e-083
Identities = 331/390 (84%)
Strand = Plus / Plus
Query: 269 gtgcccagacattgaggttgtcgttgttgacatctccaagccccgcattgaggcctggaa 328
|||||| |||||| |||| || || || || ||| ||||| |||| ||||| ||||||||
Sbjct: 2 gtgccctgacattcaggtggttgtcgtagatatcaccaagtcccggattgatgcctggaa 61
Query: 329 cagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaagcagtgcagggg 388
||| ||||| || || ||||| ||||| ||||| ||||| || |||||||||||| | ||
Sbjct: 62 cagtgacacactgccaatctatgagcctggccttgatgaagtcgtgaagcagtgccgtgg 121
Query: 389 caggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgacatcatctt 448
| ||||||||||||||||| ||| |||||||||| || |||||||||||| |||||
Sbjct: 122 aaagaacctcttcttcagcaatgacattgagaagcatgttagtgaggctgacattatctt 181
Query: 449 cgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgacct 508
|| ||||| |||||||| |||||||||||||| ||||||||||| |||||||| || ||
Sbjct: 182 tgtgtcggtaaacaccccaaccaagacccgtggtcttggagctggtaaggctgctgatct 241
Query: 509 cacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgacaagatcgt 568
||| ||||||||||| || ||||| |||||||| ||||| |||| || |||||||||||
Sbjct: 242 cacttactgggagagtgcagctcgcatgatcgctgatgtggccaaatcggacaagatcgt 301
Query: 569 tgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagatcttgaccca 628
|||||||||||||| || || |||||||| |||||||| ||||||||||||||||||||
Sbjct: 302 ggtcgagaagtccactgttccagtcaagactgctgaggcaattgagaagatcttgaccca 361
Query: 629 cnncagcaagggcatcaactaccagatcct 658
| |||||| |||||||||| |||||||||
Sbjct: 362 caacagcaatggcatcaacttccagatcct 391
>gb|BF257056.2|BF257056 HVSMEf0011L20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011L20f, mRNA sequence
Length = 543
Score = 307 bits (155), Expect = 3e-082
Identities = 328/385 (85%), Gaps = 1/385 (0%)
Strand = Plus / Plus
Query: 269 gtgcccagacattgaggttgtcgttgttgacatctccaagccccgcattgaggcctggaa 328
|||||||| || |||||||| | |||||||||||||||||| |||||||| || |||||
Sbjct: 8 gtgcccagcaatcgaggttgttgctgttgacatctccaagcctcgcattgacgcttggaa 67
Query: 329 cagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaagcagtgcagggg 388
||||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||| |||
Sbjct: 68 cagcgacacactcccaatttaccagcctggcctcgatgaggttgtcaaggcgtgcatggg 127
Query: 389 caggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgacatcatctt 448
|| ||||||||| ||||||||||| || ||||||||||| |||||||| |||||||||||
Sbjct: 128 caagaacctcttattcagcactgacgtcgagaagcacgttgctgaggccgacatcatctt 187
Query: 449 cgtctcggtgaacaccc-ccaccaagacccgtgggcttggagctggcaaggctgccgacc 507
|||||| |||||||||| |||||||||||||||| || ||||| ||||||||||||||||
Sbjct: 188 cgtctcagtgaacacccgccaccaagacccgtggtctgggagccggcaaggctgccgacc 247
Query: 508 tcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgacaagatcg 567
| ||||||||| |||||||||| || ||||||| |||||| |||||||| |||| |||||
Sbjct: 248 ttacctactggtagagcgctgcccggatgatcgacgatgtgtccaagtccgacaggatcg 307
Query: 568 ttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagatcttgaccc 627
| | | ||||| ||| |||| ||||||||| || | || ||||||| |||||||||
Sbjct: 308 tcggagtgaagtgcactgtccttgtcaagactgcataagccattgagacgatcttgactg 367
Query: 628 acnncagcaagggcatcaactacca 652
| |||||||||| ||| ||||||
Sbjct: 368 gcaacagcaagggcttcatctacca 392
>gb|BI959824.1|BI959824 HVSMEn0021M21f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021M21f, mRNA sequence
Length = 667
Score = 303 bits (153), Expect = 4e-081
Identities = 239/267 (89%), Gaps = 1/267 (0%)
Strand = Plus / Plus
Query: 393 aacctcttcttcagcactgatgttg-agaagcacgtcgctgaggctgacatcatcttcgt 451
||||| |||||| ||||||||||| ||||||| ||||| |||| ||||||||||||||
Sbjct: 44 aacctattcttctacactgatgttgtagaagcatgtcgccgagggcgacatcatcttcgt 103
Query: 452 ctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgacctcac 511
||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 104 ctccgtcaacacccccaccaagacccgtggtctgggagccggcaaggctgccgacctcac 163
Query: 512 ctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgacaagatcgttgt 571
||||||||||||||| || || |||||||||||||| |||||||| || |||||||| |
Sbjct: 164 ctactgggagagcgccgcccggatgatcgccgatgtgtccaagtcggataagatcgtcga 223
Query: 572 cgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagatcttgacccacnn 631
|||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 224 cgagaagtccaccgtccccgtcaagaccgcagaggccattgagaagatcctgacccacaa 283
Query: 632 cagcaagggcatcaactaccagatcct 658
||||||||||||||||||||| |||||
Sbjct: 284 cagcaagggcatcaactaccacatcct 310
>gb|BJ463554.1|BJ463554 BJ463554 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32h13 5', mRNA sequence
Length = 604
Score = 303 bits (153), Expect = 4e-081
Identities = 304/355 (85%)
Strand = Plus / Plus
Query: 304 ccaagccccgcattgaggcctggaacagcgacaccctcccgatctacgagcccggcctcg 363
||||| |||| ||||| ||||||||||| ||||| || || ||||| ||||| ||||| |
Sbjct: 51 ccaagtcccggattgatgcctggaacagtgacacactgccaatctatgagcctggccttg 110
Query: 364 atgatgttgtgaagcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagc 423
|||| || |||||||||||| | || | ||||||||||||||||| ||| |||||||||
Sbjct: 111 atgaagtcgtgaagcagtgccgtggaaagaacctcttcttcagcaatgacattgagaagc 170
Query: 424 acgtcgctgaggctgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggc 483
| || |||||||||||| ||||| || ||||| |||||||| |||||||||||||| |
Sbjct: 171 atgttagtgaggctgacattatctttgtgtcggtaaacaccccaaccaagacccgtggtc 230
Query: 484 ttggagctggcaaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccg 543
|||||||||| |||||||| || ||||| ||||||||||| || ||||| |||||||| |
Sbjct: 231 ttggagctggtaaggctgctgatctcacttactgggagagtgcagctcgcatgatcgctg 290
Query: 544 atgtctccaagtctgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctg 603
|||| |||| || ||||||||||| |||||||||||||| || || |||||||| ||||
Sbjct: 291 atgtggccaaatcggacaagatcgtggtcgagaagtccactgttccagtcaagactgctg 350
Query: 604 aggctattgagaagatcttgacccacnncagcaagggcatcaactaccagatcct 658
|||| ||||||||||||||||||||| |||||| |||||||||| |||||||||
Sbjct: 351 aggcaattgagaagatcttgacccacaacagcaatggcatcaacttccagatcct 405
>gb|CA025709.1|CA025709 HZ52O20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52O20
5-PRIME, mRNA sequence
Length = 363
Score = 301 bits (152), Expect = 2e-080
Identities = 217/240 (90%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 123 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctgt 182
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| || ||||| || || || |||||||||||||||||||
Sbjct: 183 cattgccatcaagtgcccagcaatggaggtggtggtcgtnnacatctccaagccccgcat 242
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 243 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttgncaa 302
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
| |||||||||| |||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 303 ggcctgcaggggcaagaacctcttcttcagcactgatgtngagaagcatgtcgccgaggc 362
>gb|BI959557.1|BI959557 HVSMEn0020C22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020C22f, mRNA sequence
Length = 663
Score = 299 bits (151), Expect = 7e-080
Identities = 299/349 (85%)
Strand = Plus / Plus
Query: 310 cccgcattgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatg 369
|||| ||||| ||||||||||| ||||| || || ||||| ||||| ||||| ||||| |
Sbjct: 179 cccggattgatgcctggaacagtgacacactgccaatctatgagcctggccttgatgaag 238
Query: 370 ttgtgaagcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcg 429
| |||||||||||| | || | ||||||||||||||||| ||| |||||||||| ||
Sbjct: 239 tcgtgaagcagtgccgtggaaagaacctcttcttcagcaatgacattgagaagcatgtta 298
Query: 430 ctgaggctgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggag 489
|||||||||||| ||||| || ||||| |||||||| |||||||||||||| |||||||
Sbjct: 299 gtgaggctgacattatctttgtgtcggtaaacaccccaaccaagacccgtggtcttggag 358
Query: 490 ctggcaaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtct 549
|||| |||||||| || ||||| ||||||||||| || ||||| |||||||| |||||
Sbjct: 359 ctggtaaggctgctgatctcacttactgggagagtgcagctcgcatgatcgctgatgtgg 418
Query: 550 ccaagtctgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggcta 609
|||| || ||||||||||| |||||||||||||| || || |||||||| |||||||| |
Sbjct: 419 ccaaatcggacaagatcgtggtcgagaagtccactgttccagtcaagactgctgaggcaa 478
Query: 610 ttgagaagatcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||||||||||| |||||| |||||||||| |||||||||
Sbjct: 479 ttgagaagatcttgacccacaacagcaatggcatcaacttccagatcct 527
>gb|CA025630.1|CA025630 HZ52L09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52L09
5-PRIME, mRNA sequence
Length = 468
Score = 272 bits (137), Expect = 2e-071
Identities = 293/345 (84%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||| | || ||||||||||| |||||||| || ||||| ||
Sbjct: 120 caagatggtgaagatctgctgccttggggctggctatgttggtggccccacaatggcggt 179
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||| |||||||||||||| |||||| |||| || || || || ||| ||||| |||| ||
Sbjct: 180 catcgccctcaagtgccctgacattcaggtggttgtcgtagatatcaccaagtcccggat 239
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||| ||||| || || ||||| ||||| ||||| ||||| || |||||
Sbjct: 240 tgatgcctggaacagtgacacactgccaatctatgagcctggccttgatgaagtcgtgaa 299
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
||||||| | || | ||||||||||||||||| ||| |||||||||| || ||||||
Sbjct: 300 gcagtgccgtggaaagaacctcttcttcagcaatgacattgagaagcatgttagtgaggc 359
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
|||||| ||||| || ||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct: 360 tgacattatctttgtgtcggtaaacaccccaaccaagacccgtggtcttggagctggtaa 419
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgc 541
|||||| || ||||| ||||||||||| || ||||| ||||||||
Sbjct: 420 ggctgctgatctcacttactgggagagtgcagctcgcatgatcgc 464
>gb|BI948049.1|BI948049 HVSMEl0007P24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0007P24f, mRNA sequence
Length = 578
Score = 270 bits (136), Expect = 6e-071
Identities = 205/228 (89%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||| | ||| | |||||||| ||||||||
Sbjct: 29 caagatggtgaagatctgctgcatcggtgctggcgacgtcagcggcccaacaatggctgt 88
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| ||||| || || || || ||||||||||||||||||||
Sbjct: 89 cattgccatcaagtgcccagcaattgaagtggtggtcgtcgacatctccaagccccgcat 148
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaa 376
||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct: 149 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctccatgatgttgtcaa 208
Query: 377 gcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagca 424
|||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 209 agcctgcaggggcaagaacctattcttcagcactgatgttgagaagca 256
>gb|BQ467197.1|BQ467197 HS02P12r HS Hordeum vulgare subsp. vulgare cDNA clone HS02P12
5-PRIME, mRNA sequence
Length = 319
Score = 254 bits (128), Expect = 4e-066
Identities = 164/176 (93%)
Strand = Plus / Plus
Query: 197 caagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgt 256
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 127 caagatggtgaagatctgctgcatcggtgctggctacgtcggcggcccaacaatggctgt 186
Query: 257 cattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcat 316
||||||| |||||||||||| |||||||| || || || ||||||||||||||||||||
Sbjct: 187 cattgccatcaagtgcccagcaattgaggtggtggtcgtcgacatctccaagccccgcat 246
Query: 317 tgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttg 372
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 247 tgacgcctggaacagcgacaccctcccgatctacgagcctggcctcgatgatgttg 302
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 77,186
Number of Sequences: 312970
Number of extensions: 77186
Number of successful extensions: 22519
Number of sequences better than 0.5: 64
Number of HSP's better than 0.5 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22425
Number of HSP's gapped (non-prelim): 75
length of query: 729
length of database: 175,134,539
effective HSP length: 19
effective length of query: 710
effective length of database: 169,188,109
effective search space: 120123557390
effective search space used: 120123557390
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)