BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750951.2.1
(1014 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV916387.1|AV916387 AV916387 K. Sato unpublished cDNA li... 327 4e-088
gb|BJ462621.1|BJ462621 BJ462621 K. Sato unpublished cDNA li... 327 4e-088
gb|AV916601.1|AV916601 AV916601 K. Sato unpublished cDNA li... 321 3e-086
gb|CK122337.1|CK122337 BES1824102p02 BES1824 Hordeum vulgar... 317 4e-085
gb|AV916192.1|AV916192 AV916192 K. Sato unpublished cDNA li... 309 1e-082
gb|AV916990.1|AV916990 AV916990 K. Sato unpublished cDNA li... 309 1e-082
gb|BU988606.1|BU988606 HF18C11r HF Hordeum vulgare subsp. v... 303 6e-081
gb|CA026968.1|CA026968 HZ57H22r HZ Hordeum vulgare subsp. v... 297 4e-079
gb|AV913799.1|AV913799 AV913799 K. Sato unpublished cDNA li... 281 2e-074
gb|CA026718.1|CA026718 HZ56L20r HZ Hordeum vulgare subsp. v... 268 3e-070
gb|AV916609.1|AV916609 AV916609 K. Sato unpublished cDNA li... 248 3e-064
gb|BJ462504.1|BJ462504 BJ462504 K. Sato unpublished cDNA li... 232 2e-059
gb|BJ465257.1|BJ465257 BJ465257 K. Sato unpublished cDNA li... 232 2e-059
gb|AV917009.1|AV917009 AV917009 K. Sato unpublished cDNA li... 230 7e-059
gb|BF253874.2|BF253874 HVSMEf0002F19f Hordeum vulgare seedl... 228 3e-058
gb|BJ464778.1|BJ464778 BJ464778 K. Sato unpublished cDNA li... 222 2e-056
gb|BQ764926.1|BQ764926 EBca01_SQ005_E07_R carpel, pre-anthe... 222 2e-056
gb|BJ463364.1|BJ463364 BJ463364 K. Sato unpublished cDNA li... 202 2e-050
gb|AV917011.1|AV917011 AV917011 K. Sato unpublished cDNA li... 190 6e-047
gb|BU985650.1|BU985650 HF08D13r HF Hordeum vulgare subsp. v... 188 2e-046
gb|BF627691.3|BF627691 HVSMEb0005I17f Hordeum vulgare seedl... 174 4e-042
gb|CA032870.1|CA032870 HX14G24r HX Hordeum vulgare subsp. v... 172 1e-041
gb|AL503928.1|AL503928 AL503928 Hordeum vulgare Barke roots... 161 6e-038
gb|BI949850.1|BI949850 HVSMEl0016H12f Hordeum vulgare spike... 153 1e-035
gb|CA024908.1|CA024908 HZ50K17r HZ Hordeum vulgare subsp. v... 153 1e-035
gb|AL504759.1|AL504759 AL504759 Hordeum vulgare Barke roots... 141 5e-032
gb|CA025312.1|CA025312 HZ51M10r HZ Hordeum vulgare subsp. v... 137 8e-031
gb|CA029214.1|CA029214 HZ64I22r HZ Hordeum vulgare subsp. v... 137 8e-031
gb|CB878975.1|CB878975 HP10H22T HP Hordeum vulgare subsp. v... 137 8e-031
gb|AF490467.1| Hordeum vulgare subsp. vulgare cultivar Igri... 137 8e-031
gb|AF490468.1| Hordeum vulgare subsp. vulgare cultivar More... 137 8e-031
gb|AV913558.1|AV913558 AV913558 K. Sato unpublished cDNA li... 133 1e-029
gb|BF254680.2|BF254680 HVSMEf0004L12f Hordeum vulgare seedl... 129 2e-028
gb|BU994352.1|BU994352 HM06L21r HM Hordeum vulgare subsp. v... 129 2e-028
gb|BU978697.1|BU978697 HA14A09r HA Hordeum vulgare subsp. v... 123 1e-026
gb|BU997130.1|BU997130 HI07A02r HI Hordeum vulgare subsp. v... 123 1e-026
gb|BU997151.1|BU997151 HI07B06r HI Hordeum vulgare subsp. v... 123 1e-026
gb|AF490469.1| Hordeum vulgare subsp. vulgare cultivar Igri... 113 1e-023
gb|AF490470.1| Hordeum vulgare subsp. vulgare cultivar More... 113 1e-023
gb|AV915505.1|AV915505 AV915505 K. Sato unpublished cDNA li... 109 2e-022
gb|BQ462989.1|BQ462989 HI02K18r HI Hordeum vulgare subsp. v... 105 3e-021
gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedl... 94 1e-017
gb|AV914017.1|AV914017 AV914017 K. Sato unpublished cDNA li... 94 1e-017
gb|AV916602.1|AV916602 AV916602 K. Sato unpublished cDNA li... 84 1e-014
gb|BF257586.2|BF257586 HVSMEf0013E13f Hordeum vulgare seedl... 82 4e-014
gb|AV912838.1|AV912838 AV912838 K. Sato unpublished cDNA li... 68 6e-010
gb|BJ446858.1|BJ446858 BJ446858 K. Sato unpublished cDNA li... 64 1e-008
gb|BJ447930.1|BJ447930 BJ447930 K. Sato unpublished cDNA li... 64 1e-008
gb|BJ454861.1|BJ454861 BJ454861 K. Sato unpublished cDNA li... 64 1e-008
gb|BJ455673.1|BJ455673 BJ455673 K. Sato unpublished cDNA li... 64 1e-008
gb|BJ470824.1|BJ470824 BJ470824 K. Sato unpublished cDNA li... 64 1e-008
gb|BJ471830.1|BJ471830 BJ471830 K. Sato unpublished cDNA li... 64 1e-008
gb|BJ474681.1|BJ474681 BJ474681 K. Sato unpublished cDNA li... 64 1e-008
gb|BJ475173.1|BJ475173 BJ475173 K. Sato unpublished cDNA li... 64 1e-008
gb|BJ475635.1|BJ475635 BJ475635 K. Sato unpublished cDNA li... 64 1e-008
gb|CB878375.1|CB878375 HP08F05T HP Hordeum vulgare subsp. v... 64 1e-008
gb|CD663301.1|CD663301 UCRHV18_05ac02_b1 Drought-stressed D... 64 1e-008
gb|AF490471.1| Hordeum vulgare subsp. vulgare cultivar CI16... 64 1e-008
gb|AF490472.1| Hordeum vulgare subsp. vulgare cultivar More... 64 1e-008
gb|AF490473.1| Hordeum vulgare subsp. vulgare cultivar Igri... 64 1e-008
gb|BJ464115.1|BJ464115 BJ464115 K. Sato unpublished cDNA li... 62 4e-008
gb|BF620280.1|BF620280 HVSMEc0019E21f Hordeum vulgare seedl... 56 2e-006
gb|BE231065.1|BE231065 HVSMEg0016D19f Hordeum vulgare pre-a... 54 9e-006
gb|CB879662.1|CB879662 HP03D08w HP Hordeum vulgare subsp. v... 48 6e-004
gb|AL508171.1|AL508171 AL508171 Hordeum vulgare Barke devel... 46 0.002
gb|BE196433.2|BE196433 HVSMEh0092E14f Hordeum vulgare 5-45 ... 44 0.009
gb|BE421346.1|BE421346 HWM008.D03 ITEC HWM Barley Leaf Libr... 42 0.035
>gb|AV916387.1|AV916387 AV916387 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a02 5', mRNA sequence
Length = 630
Score = 327 bits (165), Expect = 4e-088
Identities = 320/374 (85%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||
Sbjct: 526 tggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgt 467
Query: 526 aaggttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttg 585
||||||| |||||||| |||||||| |||| |||| || ||||||||||||||||||| |
Sbjct: 466 aaggttctgttgctgagttcccaccggcagtgcatttgctgcacctttgaggaggattcg 407
Query: 586 accctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgct 645
||||| ||| || ||||| ||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 406 accctacgtcgtaaccaagaagcgcaactatccttggttcattgaatgtaaaccagtgct 347
Query: 646 ttacgcgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgcca 705
|||| |||||||| ||||||||||||| |||||||||||||||| ||| | || ||
Sbjct: 346 ttacacgatcgccaaaggtcttaaaacaaaagtcagcatagtctgcaaatagtcccaccg 287
Query: 706 tcttcgcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggt 765
|||| || ||||||| |||||||| ||||||||||| |||||||| ||||| |||||||
Sbjct: 286 tctttgcatttaaccagcctccatacttcttctcaagtgcaagagggagatcgtagtggt 227
Query: 766 aaaggttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnat 825
|||| |||||||||||||| ||||||| |||||| || ||| ||||| |||||||| ||
Sbjct: 226 aaagattgatgtaaggagtaatgcctttctgaagaaggtagtttatcagattattgtaat 167
Query: 826 acgctacaccttct 839
|||| |||||||||
Sbjct: 166 acgcgacaccttct 153
>gb|BJ462621.1|BJ462621 BJ462621 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29i09 5', mRNA sequence
Length = 608
Score = 327 bits (165), Expect = 4e-088
Identities = 320/374 (85%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||
Sbjct: 509 tggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgt 450
Query: 526 aaggttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttg 585
||||||| |||||||| |||||||| |||| |||| || ||||||||||||||||||| |
Sbjct: 449 aaggttctgttgctgagttcccaccggcagtgcatttgctgcacctttgaggaggattcg 390
Query: 586 accctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgct 645
||||| ||| || ||||| ||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 389 accctacgtcgtaaccaagaagcgcaactatccttggttcattgaatgtaaaccagtgct 330
Query: 646 ttacgcgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgcca 705
|||| |||||||| ||||||||||||| |||||||||||||||| ||| | || ||
Sbjct: 329 ttacacgatcgccaaaggtcttaaaacaaaagtcagcatagtctgcaaatagtcccaccg 270
Query: 706 tcttcgcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggt 765
|||| || ||||||| |||||||| ||||||||||| |||||||| ||||| |||||||
Sbjct: 269 tctttgcatttaaccagcctccatacttcttctcaagtgcaagagggagatcgtagtggt 210
Query: 766 aaaggttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnat 825
|||| |||||||||||||| ||||||| |||||| || ||| ||||| |||||||| ||
Sbjct: 209 aaagattgatgtaaggagtaatgcctttctgaagaaggtagtttatcagattattgtaat 150
Query: 826 acgctacaccttct 839
|||| |||||||||
Sbjct: 149 acgcgacaccttct 136
>gb|AV916601.1|AV916601 AV916601 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p13 5', mRNA sequence
Length = 640
Score = 321 bits (162), Expect = 3e-086
Identities = 317/371 (85%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||
Sbjct: 371 tggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgt 312
Query: 526 aaggttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttg 585
||||||| |||||||| |||||||| |||| |||| || ||||||||||||||||||| |
Sbjct: 311 aaggttctgttgctgagttcccaccggcagtgcatttgctgcacctttgaggaggattcg 252
Query: 586 accctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgct 645
||||| ||| || ||||| ||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 251 accctacgtcgtaaccaagaagcgcaactatccttggttcattgaatgtaaaccagtgct 192
Query: 646 ttacgcgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgcca 705
|||| |||||||| ||||||||||||| |||||||||||||||| ||| | || ||
Sbjct: 191 ttacacgatcgccaaaggtcttaaaacaaaagtcagcatagtctgcaaatagtcccaccg 132
Query: 706 tcttcgcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggt 765
|||| || ||||||| |||||||| ||||||||||| |||||||| ||||| |||||||
Sbjct: 131 tctttgcatttaaccagcctccatacttcttctcaagtgcaagagggagatcgtagtggt 72
Query: 766 aaaggttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnat 825
|||| |||||||||||||| ||||||| |||||| || ||| ||||| |||||||| ||
Sbjct: 71 aaagattgatgtaaggagtaatgcctttctgaagaaggtagtttatcagattattgtaat 12
Query: 826 acgctacacct 836
|||| ||||||
Sbjct: 11 acgcgacacct 1
>gb|CK122337.1|CK122337 BES1824102p02 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P022 5-PRIME, mRNA sequence
Length = 750
Score = 317 bits (160), Expect = 4e-085
Identities = 315/369 (85%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||||||| | | ||||| ||||||||||| |||||||| |||||||||
Sbjct: 587 cggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgtaaggt 528
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||| |||| |||| || ||||||||||||||||||| ||||||
Sbjct: 527 tctgttgctgagttcccaccggcagtgcatttgctgcacctttgaggaggattcgaccct 468
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|| || ||||| ||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct: 467 acatcgtaaccaagaagcgcaactatccttggttcattgaatgtaaaccagtgctttaca 408
Query: 651 cgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttc 710
|||||||| ||||||||||||| |||||||||||||||| ||| | || || ||||
Sbjct: 407 cgatcgccaaaggtcttaaaacaaaagtcagcatagtctgcaaatagtcccaccgtcttt 348
Query: 711 gcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaagg 770
|| ||||||| |||||||| ||||||||||| |||||||| ||||| |||||||||||
Sbjct: 347 gcatttaaccagcctccatacttcttctcaagtgcaagagggagatcgtagtggtaaaga 288
Query: 771 ttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnatacgct 830
|||||||||||||| ||||||| |||||| || ||| ||||| |||||||| ||||||
Sbjct: 287 ttgatgtaaggagtaatgcctttctgaagaaggtagtttatcagattattgtaatacgcg 228
Query: 831 acaccttct 839
|||||||||
Sbjct: 227 acaccttct 219
>gb|AV916192.1|AV916192 AV916192 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12a16 5', mRNA sequence
Length = 444
Score = 309 bits (156), Expect = 1e-082
Identities = 296/345 (85%)
Strand = Plus / Minus
Query: 495 tgtgccaagagaaaattatgagcaactatgtaaggttcggttgctgaattcccaccagca 554
||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 440 tgtgctaagagaaaattgtgagcaacaatgtaaggttctgttgctgagttcccaccggca 381
Query: 555 gcgcatctggtgcacctttgaggaggatttgaccctgtgtcatagccaagtagcgctact 614
| |||| || ||||||||||||||||||| |||||| ||| || ||||| ||||| |||
Sbjct: 380 gtgcatttgctgcacctttgaggaggattcgaccctacgtcgtaaccaagaagcgcaact 321
Query: 615 atccttggctcattgaatnnnaaccagtgctttacgcgatcgccgtaggtcttaaaacag 674
|||||||| ||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct: 320 atccttggttcattgaatgtaaaccagtgctttacacgatcgccaaaggtcttaaaacaa 261
Query: 675 aagtcagcatagtctgtaaacaagtccgccatcttcgcgcttaaccaccctccatatttc 734
|||||||||||||||| ||| | || || |||| || ||||||| |||||||| |||
Sbjct: 260 aagtcagcatagtctgcaaatagtcccaccgtctttgcatttaaccagcctccatacttc 201
Query: 735 ttctcaagcgcaagaggaagatcatagtggtaaaggttgatgtaaggagtnatgccttgc 794
|||||||| |||||||| ||||| ||||||||||| |||||||||||||| ||||||| |
Sbjct: 200 ttctcaagtgcaagagggagatcgtagtggtaaagattgatgtaaggagtaatgcctttc 141
Query: 795 tgaagcagatagnntatcaaattattgtnatacgctacaccttct 839
||||| || ||| ||||| |||||||| |||||| |||||||||
Sbjct: 140 tgaagaaggtagtttatcagattattgtaatacgcgacaccttct 96
>gb|AV916990.1|AV916990 AV916990 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20f24 5', mRNA sequence
Length = 497
Score = 309 bits (156), Expect = 1e-082
Identities = 296/345 (85%)
Strand = Plus / Minus
Query: 495 tgtgccaagagaaaattatgagcaactatgtaaggttcggttgctgaattcccaccagca 554
||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 495 tgtgctaagagaaaattgtgagcaacaatgtaaggttctgttgctgagttcccaccggca 436
Query: 555 gcgcatctggtgcacctttgaggaggatttgaccctgtgtcatagccaagtagcgctact 614
| |||| || ||||||||||||||||||| |||||| ||| || ||||| ||||| |||
Sbjct: 435 gtgcatttgctgcacctttgaggaggattcgaccctacgtcgtaaccaagaagcgcaact 376
Query: 615 atccttggctcattgaatnnnaaccagtgctttacgcgatcgccgtaggtcttaaaacag 674
|||||||| ||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct: 375 atccttggttcattgaatgtaaaccagtgctttacacgatcgccaaaggtcttaaaacaa 316
Query: 675 aagtcagcatagtctgtaaacaagtccgccatcttcgcgcttaaccaccctccatatttc 734
|||||||||||||||| ||| | || || |||| || ||||||| |||||||| |||
Sbjct: 315 aagtcagcatagtctgcaaatagtcccaccgtctttgcatttaaccagcctccatacttc 256
Query: 735 ttctcaagcgcaagaggaagatcatagtggtaaaggttgatgtaaggagtnatgccttgc 794
|||||||| |||||||| ||||| ||||||||||| |||||||||||||| ||||||| |
Sbjct: 255 ttctcaagtgcaagagggagatcgtagtggtaaagattgatgtaaggagtaatgcctttc 196
Query: 795 tgaagcagatagnntatcaaattattgtnatacgctacaccttct 839
||||| || ||| ||||| |||||||| |||||| |||||||||
Sbjct: 195 tgaagaaggtagtttatcagattattgtaatacgcgacaccttct 151
>gb|BU988606.1|BU988606 HF18C11r HF Hordeum vulgare subsp. vulgare cDNA clone HF18C11
5-PRIME, mRNA sequence
Length = 636
Score = 303 bits (153), Expect = 6e-081
Identities = 318/374 (85%), Gaps = 1/374 (0%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||
Sbjct: 469 tggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgt 410
Query: 526 aaggttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttg 585
||||||| |||||||| |||||||| |||| |||| || ||||||||||||||||||| |
Sbjct: 409 aaggttctgttgctgagttcccaccggcagtgcatttgctgcacctttgaggaggattcg 350
Query: 586 accctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgct 645
||||| || || ||||| ||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 349 accctacatcgtaaccaagaagcgcaactatccttggttcattgaatgtaaaccagtgct 290
Query: 646 ttacgcgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgcca 705
|||| |||||||| ||||||||||||| |||||||||||||||| ||| | || ||
Sbjct: 289 ttacacgatcgccaaaggtcttaaaacaaaagtcagcatagtctgcaaatagtcccaccg 230
Query: 706 tcttcgcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggt 765
|||| || ||||||| |||||||| ||||||||||| |||||||| ||||| |||||||
Sbjct: 229 tctttgcatttaaccagcctccatacttcttctcaagtgcaagagggagatcgtagtggt 170
Query: 766 aaaggttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnat 825
|||| |||||||||||||| ||||||| || ||| || ||| ||||| |||||||| ||
Sbjct: 169 aaagattgatgtaaggagtaatgcctttct-aagaaggtagtttatcagattattgtaat 111
Query: 826 acgctacaccttct 839
|||| |||||||||
Sbjct: 110 acgcgacaccttct 97
>gb|CA026968.1|CA026968 HZ57H22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57H22
5-PRIME, mRNA sequence
Length = 491
Score = 297 bits (150), Expect = 4e-079
Identities = 303/356 (85%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||
Sbjct: 366 tggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgt 307
Query: 526 aaggttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttg 585
||||||| |||||||| |||||||| |||| |||| || ||||||||||||||||||| |
Sbjct: 306 aaggttctgttgctgagttcccaccggcagtgcatttgctgcacctttgaggaggattcg 247
Query: 586 accctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgct 645
||||| || || ||||| ||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 246 accctacatcgtaaccaagaagcgcaactatccttggttcattgaatgtaaaccagtgct 187
Query: 646 ttacgcgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgcca 705
|||| |||||||| ||||||||||||| |||||||||||||||| ||| | || ||
Sbjct: 186 ttacacgatcgccaaaggtcttaaaacaaaagtcagcatagtctgcaaatagtcccaccg 127
Query: 706 tcttcgcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggt 765
|||| || ||||||| |||||||| ||||||||||| |||||||| ||||| |||||||
Sbjct: 126 tctttgcatttaaccagcctccatacttcttctcaagtgcaagagggagatcgtagtggt 67
Query: 766 aaaggttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattattg 821
|||| |||||||||||||| ||||||| |||||| || ||| ||||| |||||||
Sbjct: 66 aaagattgatgtaaggagtaatgcctttctgaagaaggtagtttatcagattattg 11
>gb|AV913799.1|AV913799 AV913799 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f10 5', mRNA sequence
Length = 636
Score = 281 bits (142), Expect = 2e-074
Identities = 276/323 (85%)
Strand = Plus / Minus
Query: 517 caactatgtaaggttcggttgctgaattcccaccagcagcgcatctggtgcacctttgag 576
|||| ||||||||||| |||||||| |||||||| |||| |||| || ||||||||||||
Sbjct: 636 caacaatgtaaggttctgttgctgagttcccaccggcagtgcatttgctgcacctttgag 577
Query: 577 gaggatttgaccctgtgtcatagccaagtagcgctactatccttggctcattgaatnnna 636
||||||| |||||| ||| || ||||| ||||| ||||||||||| ||||||||| |
Sbjct: 576 gaggattcgaccctacgtcgtaaccaagaagcgcaactatccttggttcattgaatgtaa 517
Query: 637 accagtgctttacgcgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaaca 696
||||||||||||| |||||||| ||||||||||||| |||||||||||||||| ||| |
Sbjct: 516 accagtgctttacacgatcgccaaaggtcttaaaacaaaagtcagcatagtctgcaaata 457
Query: 697 agtccgccatcttcgcgcttaaccaccctccatatttcttctcaagcgcaagaggaagat 756
|| || |||| || ||||||| |||||||| ||||||||||| |||||||| ||||
Sbjct: 456 gtcccaccgtctttgcatttaaccagcctccatacttcttctcaagtgcaagagggagat 397
Query: 757 catagtggtaaaggttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaat 816
| ||||||||||| |||||||||||||| ||||||| |||||| || ||| ||||| ||
Sbjct: 396 cgtagtggtaaagattgatgtaaggagtaatgcctttctgaagaaggtagtttatcagat 337
Query: 817 tattgtnatacgctacaccttct 839
|||||| |||||| |||||||||
Sbjct: 336 tattgtaatacgcgacaccttct 314
>gb|CA026718.1|CA026718 HZ56L20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ56L20
5-PRIME, mRNA sequence
Length = 328
Score = 268 bits (135), Expect = 3e-070
Identities = 270/317 (85%)
Strand = Plus / Minus
Query: 505 gaaaattatgagcaactatgtaaggttcggttgctgaattcccaccagcagcgcatctgg 564
||||||| |||||||| ||||||||||| |||||||| |||||||| |||| |||| ||
Sbjct: 328 gaaaattgtgagcaacaatgtaaggttctgttgctgagttcccaccggcagtgcatttgc 269
Query: 565 tgcacctttgaggaggatttgaccctgtgtcatagccaagtagcgctactatccttggct 624
||||||||||||||||||| |||||| || || ||||| ||||| ||||||||||| |
Sbjct: 268 tgcacctttgaggaggattcgaccctacatcgtaaccaagaagcgcaactatccttggtt 209
Query: 625 cattgaatnnnaaccagtgctttacgcgatcgccgtaggtcttaaaacagaagtcagcat 684
|||||||| |||||||||||||| |||||||| ||||||||||||| ||||||||||
Sbjct: 208 cattgaatgtaaaccagtgctttacacgatcgccaaaggtcttaaaacaaaagtcagcat 149
Query: 685 agtctgtaaacaagtccgccatcttcgcgcttaaccaccctccatatttcttctcaagcg 744
|||||| ||| | || || |||| || ||||||| |||||||| ||||||||||| |
Sbjct: 148 agtctgcaaatagtcccaccgtctttgcatttaaccagcctccatacttcttctcaagtg 89
Query: 745 caagaggaagatcatagtggtaaaggttgatgtaaggagtnatgccttgctgaagcagat 804
||||||| ||||| ||||||||||| |||||||||||||| ||||||| |||||| || |
Sbjct: 88 caagagggagatcgtagtggtaaagattgatgtaaggagtaatgcctttctgaagaaggt 29
Query: 805 agnntatcaaattattg 821
|| ||||| |||||||
Sbjct: 28 agtttatcagattattg 12
>gb|AV916609.1|AV916609 AV916609 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19a05 5', mRNA sequence
Length = 535
Score = 248 bits (125), Expect = 3e-064
Identities = 254/298 (85%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||
Sbjct: 299 tggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgt 240
Query: 526 aaggttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttg 585
||||||| |||||||| |||||||| |||| |||| || ||||||||||||||||||| |
Sbjct: 239 aaggttctgttgctgagttcccaccggcagtgcatttgctgcacctttgaggaggattcg 180
Query: 586 accctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgct 645
||||| ||| || ||||| ||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 179 accctacgtcgtaaccaagaagcgcaactatccttggttcattgaatgtaaaccagtgct 120
Query: 646 ttacgcgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgcca 705
|||| |||||||| ||||||||||||| |||||||||||||||| ||| | || ||
Sbjct: 119 ttacacgatcgccaaaggtcttaaaacaaaagtcagcatagtctgcaaatagtcccaccg 60
Query: 706 tcttcgcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtg 763
|||| || ||||||| |||||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 59 tctttgcatttaaccagcctccatacttcttctcaagtgcaagagggagatcgtagtg 2
>gb|BJ462504.1|BJ462504 BJ462504 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28n09 5', mRNA sequence
Length = 398
Score = 232 bits (117), Expect = 2e-059
Identities = 233/275 (84%)
Strand = Plus / Minus
Query: 565 tgcacctttgaggaggatttgaccctgtgtcatagccaagtagcgctactatccttggct 624
|||||||||||| |||||| |||| | ||| || ||||| ||||| ||||||||||| |
Sbjct: 394 tgcacctttgagaaggattcgaccntncgtcgtanccaagaagcgcaactatccttggtt 335
Query: 625 cattgaatnnnaaccagtgctttacgcgatcgccgtaggtcttaaaacagaagtcagcat 684
|||||||| |||||||||||||| |||||||| ||||||||||||| ||||||||||
Sbjct: 334 cattgaatgtaaaccagtgctttacacgatcgccaaaggtcttaaaacaaaagtcagcat 275
Query: 685 agtctgtaaacaagtccgccatcttcgcgcttaaccaccctccatatttcttctcaagcg 744
|||||| ||| | || || |||| || ||||||| |||||||| ||||||||||| |
Sbjct: 274 agtctgcaaatagtcccaccgtctttgcatttaaccagcctccatacttcttctcaagtg 215
Query: 745 caagaggaagatcatagtggtaaaggttgatgtaaggagtnatgccttgctgaagcagat 804
||||||| ||||| ||||||||||| |||||||||||||| ||||||| |||||| || |
Sbjct: 214 caagagggagatcgtagtggtaaagattgatgtaaggagtaatgcctttctgaagaaggt 155
Query: 805 agnntatcaaattattgtnatacgctacaccttct 839
|| ||||| |||||||| |||||| |||||||||
Sbjct: 154 agtttatcagattattgtaatacgcgacaccttct 120
>gb|BJ465257.1|BJ465257 BJ465257 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39b11 5', mRNA sequence
Length = 661
Score = 232 bits (117), Expect = 2e-059
Identities = 237/278 (85%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||
Sbjct: 278 tggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgt 219
Query: 526 aaggttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttg 585
||||||| |||||||| |||||||| |||| |||| || ||||||||||||||||||| |
Sbjct: 218 aaggttctgttgctgagttcccaccggcagtgcatttgctgcacctttgaggaggattcg 159
Query: 586 accctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgct 645
||||| ||| || ||||| ||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 158 accctacgtcgtaaccaagaagcgcaactatccttggttcattgaatgtaaaccagtgct 99
Query: 646 ttacgcgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgcca 705
|||| |||||||| ||||||||||||| |||||||||||||||| ||| | || ||
Sbjct: 98 ttacacgatcgccaaaggtcttaaaacaaaagtcagcatagtctgcaaatagtcccaccg 39
Query: 706 tcttcgcgcttaaccaccctccatatttcttctcaagc 743
|||| || ||||||| |||||||| ||||||||||||
Sbjct: 38 tctttgcatttaaccagcctccatacttcttctcaagc 1
>gb|AV917009.1|AV917009 AV917009 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h02 5', mRNA sequence
Length = 496
Score = 230 bits (116), Expect = 7e-059
Identities = 236/277 (85%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||
Sbjct: 283 tggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgt 224
Query: 526 aaggttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttg 585
||||||| |||||||| |||||||| |||| |||| || ||||||||||||||||||| |
Sbjct: 223 aaggttctgttgctgagttcccaccggcagtgcatttgctgcacctttgaggaggattcg 164
Query: 586 accctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgct 645
||||| ||| || ||||| ||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 163 accctacgtcgtaaccaagaagcgcaactatccttggttcattgaatgtaaaccagtgct 104
Query: 646 ttacgcgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgcca 705
|||| |||||||| ||||||||||||| |||||||||||||||| ||| | || ||
Sbjct: 103 ttacacgatcgccaaaggtcttaaaacaaaagtcagcatagtctgcaaatagtcccaccg 44
Query: 706 tcttcgcgcttaaccaccctccatatttcttctcaag 742
|||| || ||||||| |||||||| |||||||||||
Sbjct: 43 tctttgcatttaaccagcctccatacttcttctcaag 7
>gb|BF253874.2|BF253874 HVSMEf0002F19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002F19f, mRNA sequence
Length = 535
Score = 228 bits (115), Expect = 3e-058
Identities = 247/292 (84%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | |||| ||||||||||| |||||||| ||||
Sbjct: 296 tggtccggtatcttgcaactgcataaccgtgtgttaagagaaaattgtgagcaacaatgt 237
Query: 526 aaggttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttg 585
||||||| |||| ||| |||||||| |||| |||| || ||||||||||||||||||| |
Sbjct: 236 aaggttctgttgttgagttcccaccggcagtgcatttgctgcacctttgaggaggattcg 177
Query: 586 accctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgct 645
||||| ||| || ||||| ||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 176 accctacgtcgtaaccaagaagcgcaactatccttggttcattgaatgtaaaccagtgct 117
Query: 646 ttacgcgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgcca 705
|||| |||||||| ||||||||||||| |||||||||||||||| ||| | || ||
Sbjct: 116 ttacacgatcgccaaaggtcttaaaacaaaagtcagcatagtctgcaaatagtcccaccg 57
Query: 706 tcttcgcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatc 757
|||| || ||||||| |||||||| ||||||||||| |||||||| |||||
Sbjct: 56 tctttgcatttaaccagcctccatacttcttctcaagtgcaagagggagatc 5
>gb|BJ464778.1|BJ464778 BJ464778 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37p13 5', mRNA sequence
Length = 493
Score = 222 bits (112), Expect = 2e-056
Identities = 196/225 (87%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||
Sbjct: 260 tggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgt 201
Query: 526 aaggttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttg 585
||||||| |||||||| |||||||| |||| |||| || ||||||||||||||||||| |
Sbjct: 200 aaggttctgttgctgagttcccaccggcagtgcatttgctgcacctttgaggaggattcg 141
Query: 586 accctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgct 645
||||| ||| || ||||| ||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 140 accctacgtcgtaaccaagaagcgcaactatccttggttcattgaatgtaaaccagtgct 81
Query: 646 ttacgcgatcgccgtaggtcttaaaacagaagtcagcatagtctg 690
|||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct: 80 ttacacgatcgccaaaggtcttaaaacaaaagtcagcatagtctg 36
>gb|BQ764926.1|BQ764926 EBca01_SQ005_E07_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_E07 5', mRNA sequence
Length = 715
Score = 222 bits (112), Expect = 2e-056
Identities = 196/225 (87%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||
Sbjct: 229 tggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgt 170
Query: 526 aaggttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttg 585
||||||| |||||||| |||||||| |||| |||| || ||||||||||||||||||| |
Sbjct: 169 aaggttctgttgctgagttcccaccggcagtgcatttgctgcacctttgaggaggattcg 110
Query: 586 accctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgct 645
||||| ||| || ||||| ||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 109 accctacgtcgtaaccaagaagcgcaactatccttggttcattgaatgtaaaccagtgct 50
Query: 646 ttacgcgatcgccgtaggtcttaaaacagaagtcagcatagtctg 690
|||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct: 49 ttacacgatcgccaaaggtcttaaaacaaaagtcagcatagtctg 5
>gb|BJ463364.1|BJ463364 BJ463364 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27d04 5', mRNA sequence
Length = 649
Score = 202 bits (102), Expect = 2e-050
Identities = 186/215 (86%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||
Sbjct: 216 tggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgt 157
Query: 526 aaggttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttg 585
||||||| |||||||| |||||||| |||| |||| || ||||||||||||||||||| |
Sbjct: 156 aaggttctgttgctgagttcccaccggcagtgcatttgctgcacctttgaggaggattcg 97
Query: 586 accctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgct 645
||||| ||| || ||||| ||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 96 accctacgtcgtaaccaagaagcgcaactatccttggttcattgaatgtaaaccagtgct 37
Query: 646 ttacgcgatcgccgtaggtcttaaaacagaagtca 680
|||| |||||||| ||||||||||||| ||||||
Sbjct: 36 ttacacgatcgccaaaggtcttaaaacaaaagtca 2
>gb|AV917011.1|AV917011 AV917011 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h04 5', mRNA sequence
Length = 597
Score = 190 bits (96), Expect = 6e-047
Identities = 177/205 (86%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||
Sbjct: 230 tggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgt 171
Query: 526 aaggttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttg 585
||||||| |||||||| |||||||| |||| |||| || ||||||||||||||||||| |
Sbjct: 170 aaggttctgttgctgagttcccaccggcagtgcatttgctgcacctttgaggaggattcg 111
Query: 586 accctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgct 645
||||| ||| || ||||| ||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 110 accctacgtcgtaaccaagaagcgcaactatccttggttcattgaatgtaaaccagtgct 51
Query: 646 ttacgcgatcgccgtaggtcttaaa 670
|||| |||||||| ||||||||||
Sbjct: 50 ttacacgatcgccaaaggtcttaaa 26
>gb|BU985650.1|BU985650 HF08D13r HF Hordeum vulgare subsp. vulgare cDNA clone HF08D13
5-PRIME, mRNA sequence
Length = 473
Score = 188 bits (95), Expect = 2e-046
Identities = 184/216 (85%)
Strand = Plus / Minus
Query: 624 tcattgaatnnnaaccagtgctttacgcgatcgccgtaggtcttaaaacagaagtcagca 683
||||||||| |||||||||||||| |||||||| ||||||||||||| |||||||||
Sbjct: 470 tcattgaatgtaaaccagtgctttacacgatcgccaaaggtcttaaaacaaaagtcagca 411
Query: 684 tagtctgtaaacaagtccgccatcttcgcgcttaaccaccctccatatttcttctcaagc 743
||||||| ||| | || || |||| || ||||||| |||||||| |||||||||||
Sbjct: 410 tagtctgcaaatagtcccaccgtctttgcatttaaccagcctccatacttcttctcaagt 351
Query: 744 gcaagaggaagatcatagtggtaaaggttgatgtaaggagtnatgccttgctgaagcaga 803
|||||||| ||||| ||||||||||| |||||||||||||| ||||||| |||||| ||
Sbjct: 350 gcaagagggagatcgtagtggtaaagattgatgtaaggagtaatgcctttctgaagaagg 291
Query: 804 tagnntatcaaattattgtnatacgctacaccttct 839
||| ||||| |||||||| |||||| |||||||||
Sbjct: 290 tagtttatcagattattgtaatacgcgacaccttct 255
>gb|BF627691.3|BF627691 HVSMEb0005I17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0005I17f, mRNA sequence
Length = 849
Score = 174 bits (88), Expect = 4e-042
Identities = 174/204 (85%)
Strand = Plus / Minus
Query: 636 aaccagtgctttacgcgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaac 695
||||||||||| || |||||||| ||||||||||||| |||||||||||||||| |||
Sbjct: 687 aaccagtgcttaacacgatcgccaaaggtcttaaaacaaaagtcagcatagtctgcaaat 628
Query: 696 aagtccgccatcttcgcgcttaaccaccctccatatttcttctcaagcgcaagaggaaga 755
| || || |||| || ||||||| |||||||| ||||||||||| |||||||| |||
Sbjct: 627 agtccccccgtctttgcatttaaccagcctccatacttcttctcaagtgcaagagggaga 568
Query: 756 tcatagtggtaaaggttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaa 815
|| ||||||||||| |||||||||||||| ||||||| |||||| || ||| ||||| |
Sbjct: 567 tcgtagtggtaaagattgatgtaaggagtaatgcctttctgaagaaggtagtttatcaga 508
Query: 816 ttattgtnatacgctacaccttct 839
||||||| |||||| |||||||||
Sbjct: 507 ttattgtaatacgcgacaccttct 484
>gb|CA032870.1|CA032870 HX14G24r HX Hordeum vulgare subsp. vulgare cDNA clone HX14G24
5-PRIME, mRNA sequence
Length = 631
Score = 172 bits (87), Expect = 1e-041
Identities = 170/199 (85%)
Strand = Plus / Minus
Query: 641 gtgctttacgcgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtc 700
||||||||| |||||||| ||||||||||||| |||||||||||||||| ||| | |
Sbjct: 631 gtgctttacacgatcgccaaaggtcttaaaacaaaagtcagcatagtctgcaaatagtcc 572
Query: 701 cgccatcttcgcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcata 760
| || |||| || ||||||| |||||||| ||||||||||| |||||||| ||||| ||
Sbjct: 571 caccgtctttgcatttaaccagcctccatacttcttctcaagtgcaagagggagatcgta 512
Query: 761 gtggtaaaggttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattatt 820
||||||||| |||||||||||||| ||||||| |||||| || ||| ||||| ||||||
Sbjct: 511 gtggtaaagattgatgtaaggagtaatgcctttctgaagaaggtagtttatcagattatt 452
Query: 821 gtnatacgctacaccttct 839
|| |||||| |||||||||
Sbjct: 451 gtaatacgcgacaccttct 433
>gb|AL503928.1|AL503928 AL503928 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03O02T 5', mRNA sequence
Length = 700
Score = 161 bits (81), Expect = 6e-038
Identities = 171/201 (85%), Gaps = 1/201 (0%)
Strand = Plus / Minus
Query: 640 agtgctttacgcgatcgccgtaggtctt-aaaacagaagtcagcatagtctgtaaacaag 698
|||||||||| |||||||| ||||||| |||||| |||||||||||||||| ||| |
Sbjct: 674 agtgctttacacgatcgccaaaggtctttaaaacaaaagtcagcatagtctgcaaatagt 615
Query: 699 tccgccatcttcgcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatca 758
|| || |||| || ||||||| |||||||| ||||||||||| |||||||| |||||
Sbjct: 614 cccaccgtctttgcatttaaccagcctccatacttcttctcaagtgcaagagggagatcg 555
Query: 759 tagtggtaaaggttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaatta 818
||||||||||| |||||||||||||| ||||||| |||||| || ||| ||||| ||||
Sbjct: 554 tagtggtaaagattgatgtaaggagtaatgcctttctgaagaaggtagtttatcagatta 495
Query: 819 ttgtnatacgctacaccttct 839
|||| |||||| |||||||||
Sbjct: 494 ttgtaatacgcgacaccttct 474
>gb|BI949850.1|BI949850 HVSMEl0016H12f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0016H12f, mRNA sequence
Length = 543
Score = 153 bits (77), Expect = 1e-035
Identities = 166/197 (84%)
Strand = Plus / Minus
Query: 643 gctttacgcgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccg 702
||||||| |||||||| |||| |||||||| |||||||||||||||| ||| | ||
Sbjct: 542 gctttacacgatcgccaaaggttttaaaacaaaagtcagcatagtctgcaaatagtccca 483
Query: 703 ccatcttcgcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagt 762
|| |||| || ||||||| |||||||| ||||||||||| |||||||| ||||| ||||
Sbjct: 482 ccgtctttgcatttaaccagcctccatacttcttctcaagtgcaagagggagatcgtagt 423
Query: 763 ggtaaaggttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgt 822
||||||| |||||||||||||| ||||||| ||||| || ||| ||||| ||||||||
Sbjct: 422 ggtaaagattgatgtaaggagtaatgcctttttgaagaaggtagtttatcagattattgt 363
Query: 823 natacgctacaccttct 839
|||||| |||||||||
Sbjct: 362 aatacgcgacaccttct 346
>gb|CA024908.1|CA024908 HZ50K17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50K17
5-PRIME, mRNA sequence
Length = 429
Score = 153 bits (77), Expect = 1e-035
Identities = 151/177 (85%)
Strand = Plus / Minus
Query: 663 gtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttcgcgcttaaccac 722
||||||||||| |||||||||||||||| ||| | || || |||| || |||||||
Sbjct: 429 gtcttaaaacaaaagtcagcatagtctgcaaatagtcccaccgtctttgcatttaaccag 370
Query: 723 cctccatatttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatgtaagga 782
|||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 369 cctccatacttcttctcaagtgcaagagggagatcgtagtggtaaagattgatgtaagga 310
Query: 783 gtnatgccttgctgaagcagatagnntatcaaattattgtnatacgctacaccttct 839
|| ||||||| |||||| || ||| ||||| |||||||| |||||| |||||||||
Sbjct: 309 gtaatgcctttctgaagaaggtagtttatcagattattgtaatacgcgacaccttct 253
>gb|AL504759.1|AL504759 AL504759 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06E22V 5', mRNA sequence
Length = 700
Score = 141 bits (71), Expect = 5e-032
Identities = 147/174 (84%)
Strand = Plus / Minus
Query: 666 ttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttcgcgcttaaccaccct 725
|||||||| |||||||||||||||| ||| | || || |||| || ||||||| |||
Sbjct: 650 ttaaaacaaaagtcagcatagtctgcaaatagtcccaccgtctttgcatttaaccagcct 591
Query: 726 ccatatttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatgtaaggagtn 785
||||| ||| ||||||| |||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 590 ccatacttcntctcaagtgcaagagggagatcgtagtggtaaagattgatgtaaggagta 531
Query: 786 atgccttgctgaagcagatagnntatcaaattattgtnatacgctacaccttct 839
||||||| |||||| || ||| ||||| |||||||| |||||| |||||||||
Sbjct: 530 atgcctttctgaagaaggtagtttatcagattattgtaatacgcgacaccttct 477
>gb|CA025312.1|CA025312 HZ51M10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51M10
5-PRIME, mRNA sequence
Length = 566
Score = 137 bits (69), Expect = 8e-031
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 715 ttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaaggttga 774
||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||
Sbjct: 564 ttaaccagcctccatacttcttctcaagtgcaagagggagatcgtagtggtaaagattga 505
Query: 775 tgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnatacgctacac 834
|||||||||| ||||||| |||||| || ||| ||||| |||||||| |||||| ||||
Sbjct: 504 tgtaaggagtaatgcctttctgaagaaggtagtttatcagattattgtaatacgcgacac 445
Query: 835 cttct 839
|||||
Sbjct: 444 cttct 440
>gb|CA029214.1|CA029214 HZ64I22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64I22
5-PRIME, mRNA sequence
Length = 407
Score = 137 bits (69), Expect = 8e-031
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 715 ttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaaggttga 774
||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||
Sbjct: 399 ttaaccagcctccatacttcttctcaagtgcaagagggagatcgtagtggtaaagattga 340
Query: 775 tgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnatacgctacac 834
|||||||||| ||||||| |||||| || ||| ||||| |||||||| |||||| ||||
Sbjct: 339 tgtaaggagtaatgcctttctgaagaaggtagtttatcagattattgtaatacgcgacac 280
Query: 835 cttct 839
|||||
Sbjct: 279 cttct 275
>gb|CB878975.1|CB878975 HP10H22T HP Hordeum vulgare subsp. vulgare cDNA clone HP10H22
5-PRIME, mRNA sequence
Length = 614
Score = 137 bits (69), Expect = 8e-031
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 715 ttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaaggttga 774
||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||
Sbjct: 595 ttaaccagcctccatacttcttctcaagtgcaagagggagatcgtagtggtaaagattga 536
Query: 775 tgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnatacgctacac 834
|||||||||| ||||||| |||||| || ||| ||||| |||||||| |||||| ||||
Sbjct: 535 tgtaaggagtaatgcctttctgaagaaggtagtttatcagattattgtaatacgcgacac 476
Query: 835 cttct 839
|||||
Sbjct: 475 cttct 471
>gb|AF490467.1| Hordeum vulgare subsp. vulgare cultivar Igri CONSTANS-like protein
(CO1) gene, complete cds
Length = 2252
Score = 137 bits (69), Expect = 8e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 275 gccagggtgctgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacgg 334
|||||||| || ||||||| |||||| ||||||||||| |||||||||||||||| |||
Sbjct: 1988 gccagggtcctcaggtacaaggagaaaaagaagagcagaaagtttgagaagaccacacgt 2047
Query: 335 tatgcaacgaggaagacgtacgcagaagcacggccgaggatcaagggacgcttcgcgaaa 394
|||||||| |||||| |||| || ||||||||||| ||||||||||| |||||||| |||
Sbjct: 2048 tatgcaacaaggaaggcgtatgccgaagcacggccaaggatcaagggccgcttcgccaaa 2107
Query: 395 agatc 399
|||||
Sbjct: 2108 agatc 2112
>gb|AF490468.1| Hordeum vulgare subsp. vulgare cultivar Morex CONSTANS-like protein
(CO1) gene, complete cds
Length = 4071
Score = 137 bits (69), Expect = 8e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 275 gccagggtgctgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacgg 334
|||||||| || ||||||| |||||| ||||||||||| |||||||||||||||| |||
Sbjct: 3383 gccagggtcctcaggtacaaggagaaaaagaagagcagaaagtttgagaagaccacacgt 3442
Query: 335 tatgcaacgaggaagacgtacgcagaagcacggccgaggatcaagggacgcttcgcgaaa 394
|||||||| |||||| |||| || ||||||||||| ||||||||||| |||||||| |||
Sbjct: 3443 tatgcaacaaggaaggcgtatgccgaagcacggccaaggatcaagggccgcttcgccaaa 3502
Query: 395 agatc 399
|||||
Sbjct: 3503 agatc 3507
>gb|AV913558.1|AV913558 AV913558 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i02 5', mRNA sequence
Length = 517
Score = 133 bits (67), Expect = 1e-029
Identities = 130/151 (86%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||
Sbjct: 151 tggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgt 92
Query: 526 aaggttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttg 585
||||||| |||||||| |||||||| |||| |||| || ||||||||||||||||||| |
Sbjct: 91 aaggttctgttgctgagttcccaccggcagtgcatttgctgcacctttgaggaggattcg 32
Query: 586 accctgtgtcatagccaagtagcgctactat 616
||||| ||| || ||||| ||||| |||||
Sbjct: 31 accctacgtcgtaaccaagaagcgcaactat 1
>gb|BF254680.2|BF254680 HVSMEf0004L12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0004L12f, mRNA sequence
Length = 832
Score = 129 bits (65), Expect = 2e-028
Identities = 109/125 (87%)
Strand = Plus / Minus
Query: 715 ttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaaggttga 774
||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||
Sbjct: 146 ttaaccagcctccatacttcttctcaagtgcaagagggagatcgtagtggtaaagattga 87
Query: 775 tgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnatacgctacac 834
|||||| ||| ||||||| |||||| || ||| ||||| |||||||| |||||| ||||
Sbjct: 86 tgtaagcagtaatgcctttctgaagaaggtagtttatcagattattgtaatacgcgacac 27
Query: 835 cttct 839
|||||
Sbjct: 26 cttct 22
>gb|BU994352.1|BU994352 HM06L21r HM Hordeum vulgare subsp. vulgare cDNA clone HM06L21
5-PRIME, mRNA sequence
Length = 644
Score = 129 bits (65), Expect = 2e-028
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||
Sbjct: 157 tggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgt 98
Query: 526 aaggttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttg 585
||||||| |||||||| |||||||| |||| |||| || ||||||||||||||||||| |
Sbjct: 97 aaggttctgttgctgagttcccaccggcagtgcatttgctgcacctttgaggaggattcg 38
Query: 586 accct 590
|||||
Sbjct: 37 accct 33
>gb|BU978697.1|BU978697 HA14A09r HA Hordeum vulgare subsp. vulgare cDNA clone HA14A09
5-PRIME, mRNA sequence
Length = 637
Score = 123 bits (62), Expect = 1e-026
Identities = 236/295 (80%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||| ||||||||||||||||| ||||||| ||||| |||| |||||||
Sbjct: 538 cggtatctcgcaactgcagtagcatgacataagagaatgttatggacaacagtgtaaggc 479
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||| ||||||||| |||||||||| | ||| || || | ||
Sbjct: 478 tctgttgctgagttcccaccggcagcgcatttggtgcacctgttaggggggttcgttcca 419
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|| ||| |||||||| |||||||||||||||||||||||| ||||||| ||| |
Sbjct: 418 gtatcaaagccaagtgctgctactatccttggctcattgaatgtgaaccagttcttaatt 359
Query: 651 cgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttc 710
|||||||| || ||||| ||||| || ||||||||||||| ||| | || | | |||||
Sbjct: 358 cgatcgccataagtcttgaaacaaaattcagcatagtctgcaaatatgttcacgatcttt 299
Query: 711 gcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggt 765
| |||||| | || |||| ||||||| ||| |||||||| | |||||||||||
Sbjct: 298 gggcttaagaagccatcatacttcttctgaagtgcaagagggatatcatagtggt 244
>gb|BU997130.1|BU997130 HI07A02r HI Hordeum vulgare subsp. vulgare cDNA clone HI07A02
5-PRIME, mRNA sequence
Length = 632
Score = 123 bits (62), Expect = 1e-026
Identities = 236/295 (80%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||| ||||||||||||||||| ||||||| ||||| |||| |||||||
Sbjct: 442 cggtatctcgcaactgcagtagcatgacataagagaatgttatggacaacagtgtaaggc 383
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||| ||||||||| |||||||||| | ||| || || | ||
Sbjct: 382 tctgttgctgagttcccaccggcagcgcatttggtgcacctgttaggggggttcgttcca 323
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|| ||| |||||||| |||||||||||||||||||||||| ||||||| ||| |
Sbjct: 322 gtatcaaagccaagtgctgctactatccttggctcattgaatgtgaaccagttcttaatt 263
Query: 651 cgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttc 710
|||||||| || ||||| ||||| || ||||||||||||| ||| | || | | |||||
Sbjct: 262 cgatcgccataagtcttgaaacaaaattcagcatagtctgcaaatatgttcacgatcttt 203
Query: 711 gcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggt 765
| |||||| | || |||| ||||||| ||| |||||||| | |||||||||||
Sbjct: 202 gggcttaagaagccatcatacttcttctgaagtgcaagagggatatcatagtggt 148
>gb|BU997151.1|BU997151 HI07B06r HI Hordeum vulgare subsp. vulgare cDNA clone HI07B06
5-PRIME, mRNA sequence
Length = 614
Score = 123 bits (62), Expect = 1e-026
Identities = 236/295 (80%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||| ||||||||||||||||| ||||||| ||||| |||| |||||||
Sbjct: 610 cggtatctcgcaactgcagtagcatgacataagagaatgttatggacaacagtgtaaggc 551
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||| ||||||||| |||||||||| | ||| || || | ||
Sbjct: 550 tctgttgctgagttcccaccggcagcgcatttggtgcacctgttaggggggttcgttcca 491
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|| ||| |||||||| |||||||||||||||||||||||| ||||||| ||| |
Sbjct: 490 gtatcaaagccaagtgctgctactatccttggctcattgaatgtgaaccagttcttaatt 431
Query: 651 cgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttc 710
|||||||| || ||||| ||||| || ||||||||||||| ||| | || | | |||||
Sbjct: 430 cgatcgccataagtcttgaaacaaaattcagcatagtctgcaaatatgttcacgatcttt 371
Query: 711 gcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggt 765
| |||||| | || |||| ||||||| ||| |||||||| | |||||||||||
Sbjct: 370 gggcttaagaaaccatcatacttcttctgaagtgcaagagggatatcatagtggt 316
>gb|AF490469.1| Hordeum vulgare subsp. vulgare cultivar Igri CONSTANS-like protein
(CO2) gene, complete cds
Length = 1691
Score = 113 bits (57), Expect = 1e-023
Identities = 120/141 (85%)
Strand = Plus / Plus
Query: 259 ctccatggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtt 318
|||||||||||| ||||||||||| || ||||||| |||||||||| || ||||||||
Sbjct: 1466 ctccatggacagagaggccagggtcctcaggtacaaggagaagaagcaggcaaggaagtt 1525
Query: 319 tgagaagaccatacggtatgcaacgaggaagacgtacgcagaagcacggccgaggatcaa 378
| |||| |||||| |||||||||| ||||| | || |||||||||||||| |||||||
Sbjct: 1526 tcagaaaaccataaggtatgcaacaaggaaagcatatgcagaagcacggccacggatcaa 1585
Query: 379 gggacgcttcgcgaaaagatc 399
||| || ||||| ||||||||
Sbjct: 1586 gggtcgattcgctaaaagatc 1606
Score = 54.0 bits (27), Expect = 9e-006
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 125 tcaatggaggtgggtatagtaccagacaaca 155
||||||||||||||||||||||| |||||||
Sbjct: 1344 tcaatggaggtgggtatagtaccggacaaca 1374
>gb|AF490470.1| Hordeum vulgare subsp. vulgare cultivar Morex CONSTANS-like protein
(CO2) gene, complete cds
Length = 2263
Score = 113 bits (57), Expect = 1e-023
Identities = 120/141 (85%)
Strand = Plus / Plus
Query: 259 ctccatggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtt 318
|||||||||||| ||||||||||| || ||||||| |||||||||| || ||||||||
Sbjct: 1604 ctccatggacagagaggccagggtcctcaggtacaaggagaagaagcaggcaaggaagtt 1663
Query: 319 tgagaagaccatacggtatgcaacgaggaagacgtacgcagaagcacggccgaggatcaa 378
| |||| |||||| |||||||||| ||||| | || |||||||||||||| |||||||
Sbjct: 1664 tcagaaaaccataaggtatgcaacaaggaaagcatatgcagaagcacggccacggatcaa 1723
Query: 379 gggacgcttcgcgaaaagatc 399
||| || ||||| ||||||||
Sbjct: 1724 gggtcgattcgctaaaagatc 1744
Score = 54.0 bits (27), Expect = 9e-006
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 125 tcaatggaggtgggtatagtaccagacaaca 155
||||||||||||||||||||||| |||||||
Sbjct: 1482 tcaatggaggtgggtatagtaccggacaaca 1512
>gb|AV915505.1|AV915505 AV915505 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14n06 5', mRNA sequence
Length = 641
Score = 109 bits (55), Expect = 2e-022
Identities = 97/111 (87%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||
Sbjct: 113 tggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgt 54
Query: 526 aaggttcggttgctgaattcccaccagcagcgcatctggtgcacctttgag 576
||||||| |||||||| |||||||| |||| |||| || ||||||||||||
Sbjct: 53 aaggttctgttgctgagttcccaccggcagtgcatttgctgcacctttgag 3
>gb|BQ462989.1|BQ462989 HI02K18r HI Hordeum vulgare subsp. vulgare cDNA clone HI02K18
5-PRIME, mRNA sequence
Length = 573
Score = 105 bits (53), Expect = 3e-021
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 739 caagcgcaagaggaagatcatagtggtaaaggttgatgtaaggagtnatgccttgctgaa 798
|||| |||||||| ||||| ||||||||||| |||||||||||||| ||||||| |||||
Sbjct: 573 caagtgcaagagggagatcgtagtggtaaagattgatgtaaggagtaatgcctttctgaa 514
Query: 799 gcagatagnntatcaaattattgtnatacgctacaccttct 839
| || ||| ||||| |||||||| |||||| |||||||||
Sbjct: 513 gaaggtagtttatcagattattgtaatacgcgacaccttct 473
>gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023M01f, mRNA sequence
Length = 751
Score = 93.7 bits (47), Expect = 1e-017
Identities = 83/95 (87%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||
Sbjct: 101 tggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgt 42
Query: 526 aaggttcggttgctgaattcccaccagcagcgcat 560
||||||| |||||||| |||||||| |||| ||||
Sbjct: 41 aaggttctgttgctgagttcccaccggcagtgcat 7
>gb|AV914017.1|AV914017 AV914017 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4d02 5', mRNA sequence
Length = 163
Score = 93.7 bits (47), Expect = 1e-017
Identities = 83/95 (87%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||
Sbjct: 95 tggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgt 36
Query: 526 aaggttcggttgctgaattcccaccagcagcgcat 560
||||||| |||||||| |||||||| |||| ||||
Sbjct: 35 aaggttctgttgctgagttcccaccggcagtgcat 1
>gb|AV916602.1|AV916602 AV916602 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p14 5', mRNA sequence
Length = 70
Score = 83.8 bits (42), Expect = 1e-014
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 616 tccttggctcattgaatnnnaaccagtgctttacgcgatcgccgtaggtcttaaaacaga 675
||||||| ||||||||| |||||||||||||| |||||||| ||||||||||||| |
Sbjct: 70 tccttggttcattgaatgtaaaccagtgctttacacgatcgccnaaggtcttaaaacaaa 11
Query: 676 agtcagcata 685
||||||||||
Sbjct: 10 agtcagcata 1
>gb|BF257586.2|BF257586 HVSMEf0013E13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013E13f, mRNA sequence
Length = 521
Score = 81.8 bits (41), Expect = 4e-014
Identities = 236/302 (78%), Gaps = 1/302 (0%)
Strand = Plus / Minus
Query: 538 ctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccctgtgtcat 597
|||| |||||||| ||||||||| |||||||||| | ||| || || | || || |||
Sbjct: 518 ctgagttcccaccggcagcgcatttggtgcacctgtaaggggg-ttcgttccagtatcaa 460
Query: 598 agccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacgcgatcgc 657
|||||||| | |||||||||||||||||||||| ||||||| ||| | |||||||
Sbjct: 459 agccaagtgctgatactatccttggctcattgaatgtgaaccagttcttaattcgatcgc 400
Query: 658 cgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttcgcgctta 717
| || ||||| ||||| || ||||||||||||| ||| | || | | ||||| | |||||
Sbjct: 399 cataagtcttgaaacaaaattcagcatagtctgcaaatatgttcacgatctttgggctta 340
Query: 718 accaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatgt 777
| | || |||| ||||||| ||| |||||||| | ||||||||||| || |||| |
Sbjct: 339 agaagccatcatacttcttctgaagtgcaagagggatatcatagtggttgagattgacat 280
Query: 778 aaggagtnatgccttgctgaagcagatagnntatcaaattattgtnatacgctacacctt 837
||||||| | ||||||| || | |||| ||||| ||| |||| ||||| |||||||
Sbjct: 279 aaggagtgagcccttgcttaatgacatagtctatcagattgttgtaatacgtcacacctt 220
Query: 838 ct 839
||
Sbjct: 219 ct 218
>gb|AV912838.1|AV912838 AV912838 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10i17 5', mRNA sequence
Length = 603
Score = 67.9 bits (34), Expect = 6e-010
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 466 tggtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgt 525
|||| |||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||
Sbjct: 74 tggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgt 15
Query: 526 aaggtt 531
||||||
Sbjct: 14 aaggtt 9
>gb|BJ446858.1|BJ446858 BJ446858 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15b17 5', mRNA sequence
Length = 671
Score = 63.9 bits (32), Expect = 1e-008
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||||||||||||||||| ||||||||||||||| ||||| ||| ||| |||
Sbjct: 277 atggacagggaggccagggtgcaccggtacagggagaagaggaagatgaggcggttcgag 336
Query: 323 aagaccat 330
||||||||
Sbjct: 337 aagaccat 344
>gb|BJ447930.1|BJ447930 BJ447930 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17m14 5', mRNA sequence
Length = 519
Score = 63.9 bits (32), Expect = 1e-008
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||||||||||||||||| ||||||||||||||| ||||| ||| ||| |||
Sbjct: 107 atggacagggaggccagggtgcaccggtacagggagaagaggaagatgaggcggttcgag 166
Query: 323 aagaccat 330
||||||||
Sbjct: 167 aagaccat 174
>gb|BJ454861.1|BJ454861 BJ454861 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15b17 3', mRNA sequence
Length = 632
Score = 63.9 bits (32), Expect = 1e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||||||||||||||||| ||||||||||||||| ||||| ||| ||| |||
Sbjct: 366 atggacagggaggccagggtgcaccggtacagggagaagaggaagatgaggcggttcgag 307
Query: 323 aagaccat 330
||||||||
Sbjct: 306 aagaccat 299
>gb|BJ455673.1|BJ455673 BJ455673 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17m14 3', mRNA sequence
Length = 472
Score = 63.9 bits (32), Expect = 1e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||||||||||||||||| ||||||||||||||| ||||| ||| ||| |||
Sbjct: 382 atggacagggaggccagggtgcaccggtacagggagaagaggaagatgaggcggttcgag 323
Query: 323 aagaccat 330
||||||||
Sbjct: 322 aagaccat 315
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 89,588
Number of Sequences: 312970
Number of extensions: 89588
Number of successful extensions: 26816
Number of sequences better than 0.5: 67
Number of HSP's better than 0.5 without gapping: 66
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 26712
Number of HSP's gapped (non-prelim): 100
length of query: 1014
length of database: 175,134,539
effective HSP length: 19
effective length of query: 995
effective length of database: 169,188,109
effective search space: 168342168455
effective search space used: 168342168455
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)