BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750422.2.1
(1599 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ463167.1|BJ463167 BJ463167 K. Sato unpublished cDNA li... 535 e-150
gb|BJ463879.1|BJ463879 BJ463879 K. Sato unpublished cDNA li... 470 e-131
gb|CA025934.1|CA025934 HZ53J06r HZ Hordeum vulgare subsp. v... 309 2e-082
gb|BF254138.2|BF254138 HVSMEf0003C03f Hordeum vulgare seedl... 270 1e-070
gb|CA019139.1|CA019139 HV10O15r HV Hordeum vulgare subsp. v... 236 2e-060
gb|BJ466524.1|BJ466524 BJ466524 K. Sato unpublished cDNA li... 198 4e-049
gb|BJ468050.1|BJ468050 BJ468050 K. Sato unpublished cDNA li... 165 6e-039
gb|BJ463579.1|BJ463579 BJ463579 K. Sato unpublished cDNA li... 159 3e-037
gb|CB882152.1|CB882152 HL01A09w HL Hordeum vulgare subsp. v... 149 3e-034
gb|BJ468350.1|BJ468350 BJ468350 K. Sato unpublished cDNA li... 127 1e-027
gb|AL505511.1|AL505511 AL505511 Hordeum vulgare Barke roots... 115 5e-024
gb|BE193857.3|BE193857 HVSMEh0082L13f Hordeum vulgare 5-45 ... 94 2e-017
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 54 1e-005
gb|BJ450389.1|BJ450389 BJ450389 K. Sato unpublished cDNA li... 52 6e-005
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 52 6e-005
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 50 2e-004
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 50 2e-004
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 50 2e-004
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 50 2e-004
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 50 2e-004
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 50 2e-004
gb|BJ472360.1|BJ472360 BJ472360 K. Sato unpublished cDNA li... 48 0.001
gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA,... 46 0.004
gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA,... 46 0.004
gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA,... 46 0.004
gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA,... 46 0.004
gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA,... 46 0.004
gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA,... 46 0.004
gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, ... 46 0.004
gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, ... 46 0.004
gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, ... 46 0.004
gb|BQ294526.1|BQ294526 LP10283 Lemma/palea-enriched cDNA li... 46 0.004
gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, ... 46 0.004
gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, ... 46 0.004
gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, ... 46 0.004
gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, ... 46 0.004
gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, ... 46 0.004
gb|BQ758127.1|BQ758127 EBma01_SQ002_L08_R maternal, 4 DPA, ... 46 0.004
gb|BG366876.1|BG366876 HVSMEi0008M12f Hordeum vulgare 20 DA... 44 0.014
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 44 0.014
dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds 44 0.014
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 42 0.056
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 42 0.056
gb|BJ467202.1|BJ467202 BJ467202 K. Sato unpublished cDNA li... 40 0.22
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 40 0.22
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.22
>gb|BJ463167.1|BJ463167 BJ463167 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26b03 5', mRNA sequence
Length = 545
Score = 535 bits (270), Expect = e-150
Identities = 465/530 (87%)
Strand = Plus / Minus
Query: 1014 aaattgtatgccttcccaccccttgaaataacacatcgggaatcaccagcatttgccaca 1073
||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 541 aaattgtatgcctggccagccctagaaataacacaccgggaatcaccagcatttgccact 482
Query: 1074 acaagttgggtgtttcttattaatgctacacacgctgtactcccacatgttggcccagca 1133
||||||||| | || |||| || ||||||||| |||||||| ||||||||||||||| ||
Sbjct: 481 acaagttggttattccttactagtgctacacatgctgtacttccacatgttggcccatca 422
Query: 1134 aagtcagagtgaggtccctcctctgaagcccaatcatcttgttgattatttgaatcactg 1193
||||||||||| ||||||||||| |||||| ||||||| | ||| || |||||||||
Sbjct: 421 aagtcagagtggggtccctcctcaagagcccagtcatcttctacattcttcgaatcactg 362
Query: 1194 ccccttggagaccaaatcaatccttctatcataccactaaacttgtttattttgtctcca 1253
|| ||||||||||||||||| ||||||||||| ||||| |||||||| || || |||||
Sbjct: 361 cctcttggagaccaaatcaacccttctatcatgccactgaacttgttcatcttatctcct 302
Query: 1254 agtgcagatagttctcgccaacctctctgtccttgcatcatttcatccattctgaagaaa 1313
|||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 301 agtgcagatagttctctccaacctctctgtcctcgcatcatttcatccattctaaagaaa 242
Query: 1314 gctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttgaggacttga 1373
||| |||| ||||||| ||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 241 gctttatgaacagcagttcctaggtcaccagaagaatatgcttcacttttgagaacttga 182
Query: 1374 ccatgcagatattttgcacagaatttggcaacgactcttcctccatgaccatcaaaaaca 1433
|| |||||||||||||||||||||||||| || |||||||| || || |||||||||
Sbjct: 181 gagtgtagatattttgcacagaatttggcaaccacccttcctccgtggccgtcaaaaaca 122
Query: 1434 ccaaagaatgctgtctcgctatcaagatctagcaatgctgaatgagcatcttccatggtt 1493
||||||||||| ||||| | || ||||||||||||||||||||||||||||||||| ||
Sbjct: 121 ccaaagaatgccgtctcattgtccagatctagcaatgctgaatgagcatcttccatgctt 62
Query: 1494 gctcgccatccttgcatagatgaaagacctaacttaagtctatcattttc 1543
|| ||||| |||||||||||||||||||| || || ||| ||||||||||
Sbjct: 61 gcacgccacccttgcatagatgaaagaccaaatttgagtttatcattttc 12
>gb|BJ463879.1|BJ463879 BJ463879 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30n22 5', mRNA sequence
Length = 681
Score = 470 bits (237), Expect = e-131
Identities = 549/653 (84%)
Strand = Plus / Minus
Query: 606 ttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatgga 665
||||||||||| |||||||| |||||||||||||| || |||||| | | |||||||||
Sbjct: 665 ttgaactgcacaaggatcatcgtcatgttgtcgcatccttctccacctaatgttgatgga 606
Query: 666 gccaggcatctgtccagcactctctcgcacacggcagacaggctgctctccgtgtttata 725
||||||||||| || ||||| | || ||||| ||||| ||||| ||||| || ||||
Sbjct: 605 gccaggcatctatcgagcaccttttcacacactgcagaaaggctactctctgtctttaag 546
Query: 726 cgctcgtggataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacat 785
| || ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 545 tgttcatggatgaaatcgaccagctgttggctcgacatgcagtcccaaatgccatcacat 486
Query: 786 gctacaacaacaaagtcgtcatcatcgcagagctccacgacgttgatatcaggattggcc 845
|||| ||||| ||| || |||||||| || ||||| || ||| | ||||| || ||
Sbjct: 485 gctaaaacaagaaaatcatcatcatcacaaagctcgacagtgtttacgtcagggtttgct 426
Query: 846 gtcacaatttgcttctcgggaggcaggaatttgttctgtttcaattccacgtctccaatt 905
|||| |||||||| || |||| || |||||| |||||||| ||||||| |||||||||
Sbjct: 425 gtcaacatttgcttatcaggagacaagaatttattctgtttaaattccatatctccaatt 366
Query: 906 gcccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccctgctttc 965
|| ||||||||||||| | ||||||||||||| ||||| |||||| | ||||||||||||
Sbjct: 365 gctcttgacaagtttatagttccatttactcgccccatttggatgtacccccctgctttc 306
Query: 966 attatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattgtatgcc 1025
| ||||| ||||||||| ||| ||||||||||||||||||| || |||||||||||||||
Sbjct: 305 agtatccgttctctctctgcttcaagctctggtttgtggtctcttgataaattgtatgcc 246
Query: 1026 ttcccaccccttgaaataacacatcgggaatcaccagcatttgccacaacaagttgggtg 1085
| ||| |||||| |||||||| |||||||| || || ||||||||||||||||| |
Sbjct: 245 tggccattccttgagataacacagcgggaatctccggcgtttgccacaacaagttgacta 186
Query: 1086 tttcttattaatgctacacacgctgtactcccacatgttggcccagcaaagtcagagtga 1145
|| |||| | ||| ||||| ||||||||||| || |||||||| ||| |||||||||
Sbjct: 185 ttccttaccattgcaacacaggctgtactcccgcaggttggcccgctaaaatcagagtga 126
Query: 1146 ggtccctcctctgaagcccaatcatcttgttgattatttgaatcactgccccttggagac 1205
||||||||||| ||||||||||||| ||| || ||||||||||||||| || ||||||
Sbjct: 125 ggtccctcctcaaaagcccaatcatcatgtctatcatttgaatcactgcctctcggagac 66
Query: 1206 caaatcaatccttctatcataccactaaacttgtttattttgtctccaagtgc 1258
|| ||||| ||||||||||| ||| |||||| ||||||||| |||||||||||
Sbjct: 65 cagatcaacccttctatcatgccagtaaactggtttattttatctccaagtgc 13
>gb|CA025934.1|CA025934 HZ53J06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53J06
5-PRIME, mRNA sequence
Length = 445
Score = 309 bits (156), Expect = 2e-082
Identities = 369/440 (83%)
Strand = Plus / Minus
Query: 618 aggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatggagccaggcatctg 677
|||||||| |||||||||||||| || |||||| | | ||||||||||||||||||||
Sbjct: 445 aggatcatcgtcatgttgtcgcatccttctccacctaatgttgatggagccaggcatcta 386
Query: 678 tccagcactctctcgcacacggcagacaggctgctctccgtgtttatacgctcgtggata 737
|| ||||| | || ||||| ||||| ||||| ||||| || |||| | || |||||
Sbjct: 385 tcgagcaccttttcacacactgcagaaaggctactctctgtctttaagtgttcatggatg 326
Query: 738 aaatccaccagctgttggcttgacatgcagtcccaaatgccatcacatgctacaacaaca 797
||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
Sbjct: 325 aaatcgaccagctgttggctcgacatgcagtcccaaatgccatcacatgctaaaacaaga 266
Query: 798 aagtcgtcatcatcgcagagctccacgacgttgatatcaggattggccgtcacaatttgc 857
|| || |||||||| || ||||| || ||| | ||||| || || |||| ||||||
Sbjct: 265 aaatcatcatcatcacaaagctcgacagtgtttacgtcagggtttgctgtcaacatttgc 206
Query: 858 ttctcgggaggcaggaatttgttctgtttcaattccacgtctccaattgcccttgacaag 917
|| || |||| || |||||| |||||||| ||||||| ||||||||||| |||||||||
Sbjct: 205 ttatcaggagacaagaatttattctgtttaaattccatatctccaattgctcttgacaag 146
Query: 918 tttaaacttccatttactcgtcccatatggatgaagccccctgctttcattatcctttct 977
|||| | ||||||||||||| ||||| |||||| | ||||||||||||| ||||| ||||
Sbjct: 145 tttatagttccatttactcgccccatttggatgtacccccctgctttcagtatccgttct 86
Query: 978 ctctcagctgcaagctctggtttgtggtccctcgataaattgtatgccttcccacccctt 1037
||||| ||| ||||||||||||||||||| || |||||||||||||||| ||| ||||
Sbjct: 85 ctctctgcttcaagctctggtttgtggtctcttgataaattgtatgcctggccattcctt 26
Query: 1038 gaaataacacatcgggaatc 1057
|| |||||||| ||||||||
Sbjct: 25 gagataacacagcgggaatc 6
>gb|BF254138.2|BF254138 HVSMEf0003C03f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003C03f, mRNA sequence
Length = 529
Score = 270 bits (136), Expect = 1e-070
Identities = 229/260 (88%)
Strand = Plus / Minus
Query: 600 ggttttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgtt 659
||||||||||||||||||| ||||||||||||||||||||| |||||||| | || |||
Sbjct: 260 ggttttttgaactgcaccaagatcatggtcatgttgtcgcatccgtctccgcccattgtt 201
Query: 660 gatggagccaggcatctgtccagcactctctcgcacacggcagacaggctgctctccgtg 719
|||||||||||||||||||| |||||||| || ||||| ||||| ||| |||| ||||||
Sbjct: 200 gatggagccaggcatctgtcgagcactctttcacacactgcagaaagggtgctttccgtg 141
Query: 720 tttatacgctcgtggataaaatccaccagctgttggcttgacatgcagtcccaaatgcca 779
| |||| |||||||||| |||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 140 tgtatatgctcgtggatgaaatccaccaactgttggcttgacatacagtcccaaatgcca 81
Query: 780 tcacatgctacaacaacaaagtcgtcatcatcgcagagctccacgacgttgatatcagga 839
|||||||||| ||||| |||||| || |||| ||| |||||||| || ||||| ||||||
Sbjct: 80 tcacatgctaaaacaagaaagtcatcctcattgcaaagctccacaacattgatgtcagga 21
Query: 840 ttggccgtcacaatttgctt 859
|| | ||||| ||||||||
Sbjct: 20 tttgaagtcactatttgctt 1
>gb|CA019139.1|CA019139 HV10O15r HV Hordeum vulgare subsp. vulgare cDNA clone HV10O15
5-PRIME, mRNA sequence
Length = 538
Score = 236 bits (119), Expect = 2e-060
Identities = 215/247 (87%)
Strand = Plus / Minus
Query: 1332 cctaggtcaccagttgaataggcttcgcttttgaggacttgaccatgcagatattttgca 1391
||||||||||||| ||||| ||||| |||||||| |||||| || ||||||||||||
Sbjct: 532 cctaggtcaccagaagaatatgcttcacttttgagaacttgagagtgtagatattttgca 473
Query: 1392 cagaatttggcaacgactcttcctccatgaccatcaaaaacaccaaagaatgctgtctcg 1451
|||||||||||||| || |||||||| || || |||||||||||||||||||| |||||
Sbjct: 472 cagaatttggcaaccacccttcctccgtggccgtcaaaaacaccaaagaatgccgtctca 413
Query: 1452 ctatcaagatctagcaatgctgaatgagcatcttccatggttgctcgccatccttgcata 1511
| || ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||
Sbjct: 412 ttgtccagatctagcaatgctgaatgagcatcttccatgcttgcacgccacccttgcata 353
Query: 1512 gatgaaagacctaacttaagtctatcattttctccattttcagatagcttgtcagttttt 1571
||||||||||| || || ||| |||||||||| || | |||||||||||| || || |||
Sbjct: 352 gatgaaagaccaaatttgagtttatcattttccccgtcttcagatagcttatcggtcttt 293
Query: 1572 ggagtac 1578
|||||||
Sbjct: 292 ggagtac 286
>gb|BJ466524.1|BJ466524 BJ466524 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32j08 3', mRNA sequence
Length = 643
Score = 198 bits (100), Expect = 4e-049
Identities = 161/180 (89%), Gaps = 1/180 (0%)
Strand = Plus / Plus
Query: 600 ggttttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgtt 659
||||||||||||||||||| ||||||||||||||||||||| |||||||| | || |||
Sbjct: 463 ggttttttgaactgcaccaagatcatggtcatgttgtcgcatccgtctccgcccattgtt 522
Query: 660 gatggagccaggcatctgtccagcactctctcgcacacggcagacaggctgctct-ccgt 718
|||||||||||||||||||| |||||||| || ||||| ||||| ||| |||| | ||||
Sbjct: 523 gatggagccaggcatctgtcgagcactctttcacacactgcagaaagggtgctttcccgt 582
Query: 719 gtttatacgctcgtggataaaatccaccagctgttggcttgacatgcagtcccaaatgcc 778
|| |||| |||||||||| |||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 583 gtgtatatgctcgtggatgaaatccaccaactgttggcttgacatacagtcccaaatgcc 642
>gb|BJ468050.1|BJ468050 BJ468050 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30n22 3', mRNA sequence
Length = 636
Score = 165 bits (83), Expect = 6e-039
Identities = 182/215 (84%)
Strand = Plus / Plus
Query: 606 ttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatgga 665
||||||||||| |||||||| |||||||||||||| || |||||| | | |||||||||
Sbjct: 378 ttgaactgcacaaggatcatcgtcatgttgtcgcatccttctccacctaatgttgatgga 437
Query: 666 gccaggcatctgtccagcactctctcgcacacggcagacaggctgctctccgtgtttata 725
||||||||||| || ||||| | || ||||| ||||| ||||| ||||| || ||||
Sbjct: 438 gccaggcatctatcgagcaccttttcacacactgcagaaaggctactctctgtctttaag 497
Query: 726 cgctcgtggataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacat 785
| || ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 498 tgttcatggatgaaatcgaccagctgttggctcgacatgcagtcccaaatgccatcacat 557
Query: 786 gctacaacaacaaagtcgtcatcatcgcagagctc 820
|||| ||||| ||| || |||||||| || |||||
Sbjct: 558 gctaaaacaagaaaatcatcatcatcacaaagctc 592
>gb|BJ463579.1|BJ463579 BJ463579 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32j08 5', mRNA sequence
Length = 610
Score = 159 bits (80), Expect = 3e-037
Identities = 125/140 (89%)
Strand = Plus / Minus
Query: 600 ggttttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgtt 659
||||||||||||||||||| ||||||||||||||||||||| |||||||| | || |||
Sbjct: 151 ggttttttgaactgcaccaagatcatggtcatgttgtcgcatccgtctccgcccattgtt 92
Query: 660 gatggagccaggcatctgtccagcactctctcgcacacggcagacaggctgctctccgtg 719
|||||||||||||||||||| |||||||| || ||||| ||||| ||| |||| ||||||
Sbjct: 91 gatggagccaggcatctgtcgagcactctttcacacactgcagaaagggtgctttccgtg 32
Query: 720 tttatacgctcgtggataaa 739
| |||| |||||||||||||
Sbjct: 31 tgtatatgctcgtggataaa 12
>gb|CB882152.1|CB882152 HL01A09w HL Hordeum vulgare subsp. vulgare cDNA clone HL01A09
3-PRIME, mRNA sequence
Length = 418
Score = 149 bits (75), Expect = 3e-034
Identities = 129/147 (87%)
Strand = Plus / Minus
Query: 1432 caccaaagaatgctgtctcgctatcaagatctagcaatgctgaatgagcatcttccatgg 1491
||||||||||||| ||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 418 caccaaagaatgccgtctcattgtccagatctagcaatgctgaatgagcatcttccatgc 359
Query: 1492 ttgctcgccatccttgcatagatgaaagacctaacttaagtctatcattttctccatttt 1551
|||| ||||| |||||||||||||||||||| || || ||| |||||||||| || | ||
Sbjct: 358 ttgcacgccacccttgcatagatgaaagaccaaatttgagtttatcattttccccgtctt 299
Query: 1552 cagatagcttgtcagtttttggagtac 1578
|||||||||| || || ||||||||||
Sbjct: 298 cagatagcttatcggtctttggagtac 272
>gb|BJ468350.1|BJ468350 BJ468350 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38g05 3', mRNA sequence
Length = 641
Score = 127 bits (64), Expect = 1e-027
Identities = 94/104 (90%)
Strand = Plus / Plus
Query: 600 ggttttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgtt 659
||||||||||||||||||| ||||||||||||||||||||| |||||||| | || |||
Sbjct: 537 ggttttttgaactgcaccaagatcatggtcatgttgtcgcatccgtctccgcccattgtt 596
Query: 660 gatggagccaggcatctgtccagcactctctcgcacacggcaga 703
|||||||||||||||||||| |||||||| || ||||| |||||
Sbjct: 597 gatggagccaggcatctgtcgagcactctttcacacactgcaga 640
>gb|AL505511.1|AL505511 AL505511 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08L06V 5', mRNA sequence
Length = 688
Score = 115 bits (58), Expect = 5e-024
Identities = 115/133 (86%), Gaps = 1/133 (0%)
Strand = Plus / Plus
Query: 600 ggttttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgtt 659
||||||||||||||||||| ||||||||||||||||||||| |||||||| | || |||
Sbjct: 552 ggttttttgaactgcaccaagatcatggtcatgttgtcgcatccgtctccgcccattgtt 611
Query: 660 gatggagcca-ggcatctgtccagcactctctcgcacacggcagacaggctgctctccgt 718
|||||||||| |||||||||| |||||||| || ||||| ||| | ||| |||| ||||
Sbjct: 612 gatggagccagggcatctgtcgagcactctttcacacactgcanaaagggtgctttccgg 671
Query: 719 gtttatacgctcg 731
|| |||| |||||
Sbjct: 672 gtgtatatgctcg 684
>gb|BE193857.3|BE193857 HVSMEh0082L13f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0082L13f, mRNA sequence
Length = 625
Score = 93.7 bits (47), Expect = 2e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 600 ggttttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgtt 659
||||||||||||||||||| ||||||||||||||||||||| |||||||| | || |||
Sbjct: 71 ggttttttgaactgcaccaagatcatggtcatgttgtcgcatccgtctccgcccattgtt 12
Query: 660 gatggagccag 670
|||||||||||
Sbjct: 11 gatggagccag 1
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I06 5', mRNA sequence
Length = 494
Score = 54.0 bits (27), Expect = 1e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1573 gagtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||||
Sbjct: 412 gagtacctgcccgggcggccgctcgaa 438
>gb|BJ450389.1|BJ450389 BJ450389 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak29f20 5', mRNA sequence
Length = 625
Score = 52.0 bits (26), Expect = 6e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 1034 ccttgaaataacacatcgggaatcaccagcatttgccacaac 1075
|||||| |||||||| |||||||| || ||||||||||||||
Sbjct: 53 ccttgagataacacaccgggaatccccggcatttgccacaac 12
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 737 aaaatccaccagctgttggcttgacatgcagtcccaaatgccatcaca 784
||||||||| | ||||| ||||||||||||||||| || ||||||||
Sbjct: 350 aaaatccactacttgttgacttgacatgcagtcccatataccatcaca 303
Score = 40.1 bits (20), Expect = 0.22
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 900 ccaattgcccttgacaagtttaaacttccatt 931
|||||||| |||| |||||| |||||||||||
Sbjct: 187 ccaattgctcttgtcaagttcaaacttccatt 156
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 52.0 bits (26), Expect = 6e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcggccgctcgaa 1599
||||||||||||||||||||||||||
Sbjct: 499 agtacctgcccgggcggccgctcgaa 524
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_H07 5', mRNA sequence
Length = 422
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 341 gtacctgcccgggcggccgctcgaa 365
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-7,
mRNA sequence
Length = 420
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 29 gtacctgcccgggcggccgctcgaa 5
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
similar to Rubisco small sub-unit gene, mRNA sequence
Length = 491
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 241 gtacctgcccgggcggccgctcgaa 265
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of kernel
Hordeum vulgare subsp. vulgare cDNA clone 3-159 similar
to putative ABC transporter, mRNA sequence
Length = 339
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 262 gtacctgcccgggcggccgctcgaa 286
>gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F01 5', mRNA sequence
Length = 256
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccgctcgaa 79
>gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L04 5', mRNA sequence
Length = 454
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccgctcgaa 79
>gb|BJ472360.1|BJ472360 BJ472360 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal33p02 5', mRNA sequence
Length = 560
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1412 tcctccatgaccatcaaaaacaccaaagaatg 1443
||||||||| |||||| |||||||||||||||
Sbjct: 350 tcctccatggccatcataaacaccaaagaatg 319
>gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_G09 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H03 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_J02 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_K03 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_N04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_B01 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F10 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_G07 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BQ294526.1|BQ294526 LP10283 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-283,
mRNA sequence
Length = 294
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1577 acctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||
Sbjct: 220 acctgcccgggcggccgctcgaa 242
>gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F11 5', mRNA sequence
Length = 399
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||
Sbjct: 135 acctgcccgggcggccgctcgaa 113
>gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_K09 5', mRNA sequence
Length = 396
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||
Sbjct: 135 acctgcccgggcggccgctcgaa 113
>gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N09 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N10 5', mRNA sequence
Length = 406
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||
Sbjct: 135 acctgcccgggcggccgctcgaa 113
>gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N11 5', mRNA sequence
Length = 375
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BQ758127.1|BQ758127 EBma01_SQ002_L08_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_L08 5', mRNA sequence
Length = 202
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BG366876.1|BG366876 HVSMEi0008M12f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0008M12f, mRNA sequence
Length = 506
Score = 44.1 bits (22), Expect = 0.014
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1412 tcctccatgaccatcaaaaacaccaaagaa 1441
||||||||| |||||| |||||||||||||
Sbjct: 131 tcctccatggccatcataaacaccaaagaa 102
>gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F09 5', mRNA sequence
Length = 387
Score = 44.1 bits (22), Expect = 0.014
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcggccgct 1595
||||||||||||||||||||||
Sbjct: 333 agtacctgcccgggcggccgct 354
>dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds
Length = 1285
Score = 44.1 bits (22), Expect = 0.014
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcga 1598
||||||||||||||||||||||
Sbjct: 22 acctgcccgggcggccgctcga 1
>gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-30
similar to Cytosolic GA3PDH gene, mRNA sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.056
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcggccgc 1594
|||||||||||||||||||||
Sbjct: 270 agtacctgcccgggcggccgc 290
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgc 1594
||||||||||||||||||||
Sbjct: 302 gtacctgcccgggcggccgc 283
>gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA library from dough stage of kernel
Hordeum vulgare subsp. vulgare cDNA clone 3-108, mRNA
sequence
Length = 530
Score = 42.1 bits (21), Expect = 0.056
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcggccgc 1594
|||||||||||||||||||||
Sbjct: 327 agtacctgcccgggcggccgc 347
>gb|BJ467202.1|BJ467202 BJ467202 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26b03 3', mRNA sequence
Length = 531
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 600 ggttttttgaactgcaccaggatc 623
||||||||||||||||||| ||||
Sbjct: 508 ggttttttgaactgcaccaagatc 531
>gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-6,
mRNA sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgc 1594
||||||||||||||||||||
Sbjct: 273 gtacctgcccgggcggccgc 254
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgc 1594
||||||||||||||||||||
Sbjct: 242 gtacctgcccgggcggccgc 261
>gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA library from dough stage of kernel
Hordeum vulgare subsp. vulgare cDNA clone 3-21 similar to
A. thaliana AtRer1A, Accession No. AY044321, mRNA
sequence
Length = 342
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgc 1594
||||||||||||||||||||
Sbjct: 342 gtacctgcccgggcggccgc 323
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 141,652
Number of Sequences: 312970
Number of extensions: 141652
Number of successful extensions: 36417
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36339
Number of HSP's gapped (non-prelim): 73
length of query: 1599
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1580
effective length of database: 169,188,109
effective search space: 267317212220
effective search space used: 267317212220
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)