BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643604.2.1
(578 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV834352.1|AV834352 AV834352 K. Sato unpublished cDNA li... 260 5e-068
gb|BQ465179.1|BQ465179 HU02N24r HU Hordeum vulgare subsp. v... 260 5e-068
gb|BQ470446.1|BQ470446 HX03A05r HX Hordeum vulgare subsp. v... 260 5e-068
gb|BQ470603.1|BQ470603 HX03H14r HX Hordeum vulgare subsp. v... 260 5e-068
gb|CA007256.1|CA007256 HU07F09r HU Hordeum vulgare subsp. v... 260 5e-068
gb|BQ665321.1|BQ665321 HX03A05u HX Hordeum vulgare subsp. v... 198 1e-049
gb|AJ432746.1|AJ432746 AJ432746 S00002 Hordeum vulgare subs... 174 2e-042
gb|CA025871.1|CA025871 HZ53G05r HZ Hordeum vulgare subsp. v... 172 8e-042
gb|AL510395.1|AL510395 AL510395 Hordeum vulgare Barke devel... 153 8e-036
gb|BQ663490.1|BQ663490 HU02N24u HU Hordeum vulgare subsp. v... 117 4e-025
gb|BQ665408.1|BQ665408 HX03H14u HX Hordeum vulgare subsp. v... 60 8e-008
gb|CB875785.1|CB875785 HX09F12w HX Hordeum vulgare subsp. v... 48 3e-004
gb|BM373863.2|BM373863 EBma03_SQ002_P07_R maternal, 8 DPA, ... 44 0.005
gb|AL510339.1|AL510339 AL510339 Hordeum vulgare Barke devel... 42 0.020
>gb|AV834352.1|AV834352 AV834352 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags15d19, mRNA sequence
Length = 619
Score = 260 bits (131), Expect = 5e-068
Identities = 224/255 (87%)
Strand = Plus / Plus
Query: 324 gggtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaagaagggat 383
||||||| || ||||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 351 gggtctccggcggtgcagtccaacggatcaaggcccagttcaggccttggaagaagggat 410
Query: 384 gccgcttaatctcagtggctcctctcgacgagccaagccggtactctggctctttcacaa 443
||||||| ||||| | |||||| || |||||| ||||||| ||||||||| |||||||
Sbjct: 411 gccgcttgatctcggcagctcctttcctcgagcctagccggtgctctggctccttcacaa 470
Query: 444 gcagccctctgatcagatctcgagcgtggaagcttacagctggattatcagggaacttca 503
||| ||||||||||||||| ||||| ||| |||| |||||||| |||||||||||||||
Sbjct: 471 gcaaccctctgatcagatcgcgagcctggtagctcacagctgggctatcagggaacttca 530
Query: 504 agccctgtgagatcacatttgagagtgtttcctcattgccaggtcccttgaatggtgtct 563
|||||||||| |||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct: 531 gcccctgtgagaccacatttgtaagtgtttcatcattgccaggtcccctgaatggtgtct 590
Query: 564 tgccatagagtaatt 578
|||||||||| ||||
Sbjct: 591 tgccatagagcaatt 605
Score = 60.0 bits (30), Expect = 8e-008
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 218 aagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgccttccttt 277
|||||||| |||||||||||||| || |||| |||||| || || || |||||||||||
Sbjct: 239 aagagctcaaactcgatgtcgtctccgttcatccggaactcgaggcacttgccttccttc 298
Query: 278 ttcttgcgtg 287
||||| ||||
Sbjct: 299 ttcttccgtg 308
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 35 tgatggtattaacaaggcataaagttacaggc 66
||||||||||||||||| ||||||||||||||
Sbjct: 4 tgatggtattaacaaggaataaagttacaggc 35
>gb|BQ465179.1|BQ465179 HU02N24r HU Hordeum vulgare subsp. vulgare cDNA clone HU02N24
5-PRIME, mRNA sequence
Length = 624
Score = 260 bits (131), Expect = 5e-068
Identities = 224/255 (87%)
Strand = Plus / Minus
Query: 324 gggtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaagaagggat 383
||||||| || ||||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 602 gggtctccggcggtgcagtccaacggatcaaggcccagttcaggccttggaagaagggat 543
Query: 384 gccgcttaatctcagtggctcctctcgacgagccaagccggtactctggctctttcacaa 443
||||||| ||||| | |||||| || |||||| ||||||| ||||||||| |||||||
Sbjct: 542 gccgcttgatctcggcagctcctttcctcgagcctagccggtgctctggctccttcacaa 483
Query: 444 gcagccctctgatcagatctcgagcgtggaagcttacagctggattatcagggaacttca 503
||| ||||||||||||||| ||||| ||| |||| |||||||| |||||||||||||||
Sbjct: 482 gcaaccctctgatcagatcgcgagcctggtagctcacagctgggctatcagggaacttca 423
Query: 504 agccctgtgagatcacatttgagagtgtttcctcattgccaggtcccttgaatggtgtct 563
|||||||||| |||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct: 422 gcccctgtgagaccacatttgtaagtgtttcatcattgccaggtcccctgaatggtgtct 363
Query: 564 tgccatagagtaatt 578
|||||||||| ||||
Sbjct: 362 tgccatagagcaatt 348
>gb|BQ470446.1|BQ470446 HX03A05r HX Hordeum vulgare subsp. vulgare cDNA clone HX03A05
5-PRIME, mRNA sequence
Length = 666
Score = 260 bits (131), Expect = 5e-068
Identities = 224/255 (87%)
Strand = Plus / Minus
Query: 324 gggtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaagaagggat 383
||||||| || ||||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 500 gggtctccggcggtgcagtccaacggatcaaggcccagttcaggccttggaagaagggat 441
Query: 384 gccgcttaatctcagtggctcctctcgacgagccaagccggtactctggctctttcacaa 443
||||||| ||||| | |||||| || |||||| ||||||| ||||||||| |||||||
Sbjct: 440 gccgcttgatctcggcagctcctttcctcgagcctagccggtgctctggctccttcacaa 381
Query: 444 gcagccctctgatcagatctcgagcgtggaagcttacagctggattatcagggaacttca 503
||| ||||||||||||||| ||||| ||| |||| |||||||| |||||||||||||||
Sbjct: 380 gcaaccctctgatcagatcgcgagcctggtagctcacagctgggctatcagggaacttca 321
Query: 504 agccctgtgagatcacatttgagagtgtttcctcattgccaggtcccttgaatggtgtct 563
|||||||||| |||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct: 320 gcccctgtgagaccacatttgtaagtgtttcatcattgccaggtcccctgaatggtgtct 261
Query: 564 tgccatagagtaatt 578
|||||||||| ||||
Sbjct: 260 tgccatagagcaatt 246
Score = 60.0 bits (30), Expect = 8e-008
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 218 aagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgccttccttt 277
|||||||| |||||||||||||| || |||| |||||| || || || |||||||||||
Sbjct: 612 aagagctcaaactcgatgtcgtctccgttcatccggaactcgaggcacttgccttccttc 553
Query: 278 ttcttgcgtg 287
||||| ||||
Sbjct: 552 ttcttccgtg 543
>gb|BQ470603.1|BQ470603 HX03H14r HX Hordeum vulgare subsp. vulgare cDNA clone HX03H14
5-PRIME, mRNA sequence
Length = 629
Score = 260 bits (131), Expect = 5e-068
Identities = 224/255 (87%)
Strand = Plus / Minus
Query: 324 gggtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaagaagggat 383
||||||| || ||||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 500 gggtctccggcggtgcagtccaacggatcaaggcccagttcaggccttggaagaagggat 441
Query: 384 gccgcttaatctcagtggctcctctcgacgagccaagccggtactctggctctttcacaa 443
||||||| ||||| | |||||| || |||||| ||||||| ||||||||| |||||||
Sbjct: 440 gccgcttgatctcggcagctcctttcctcgagcctagccggtgctctggctccttcacaa 381
Query: 444 gcagccctctgatcagatctcgagcgtggaagcttacagctggattatcagggaacttca 503
||| ||||||||||||||| ||||| ||| |||| |||||||| |||||||||||||||
Sbjct: 380 gcaaccctctgatcagatcgcgagcctggtagctcacagctgggctatcagggaacttca 321
Query: 504 agccctgtgagatcacatttgagagtgtttcctcattgccaggtcccttgaatggtgtct 563
|||||||||| |||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct: 320 gcccctgtgagaccacatttgtaagtgtttcatcattgccaggtcccctgaatggtgtct 261
Query: 564 tgccatagagtaatt 578
|||||||||| ||||
Sbjct: 260 tgccatagagcaatt 246
Score = 60.0 bits (30), Expect = 8e-008
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 218 aagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgccttccttt 277
|||||||| |||||||||||||| || |||| |||||| || || || |||||||||||
Sbjct: 612 aagagctcaaactcgatgtcgtctccgttcatccggaactcgaggcacttgccttccttc 553
Query: 278 ttcttgcgtg 287
||||| ||||
Sbjct: 552 ttcttccgtg 543
>gb|CA007256.1|CA007256 HU07F09r HU Hordeum vulgare subsp. vulgare cDNA clone HU07F09
5-PRIME, mRNA sequence
Length = 592
Score = 260 bits (131), Expect = 5e-068
Identities = 224/255 (87%)
Strand = Plus / Minus
Query: 324 gggtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaagaagggat 383
||||||| || ||||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 437 gggtctccggcggtgcagtccaacggatcaaggcccagttcaggccttggaagaagggat 378
Query: 384 gccgcttaatctcagtggctcctctcgacgagccaagccggtactctggctctttcacaa 443
||||||| ||||| | |||||| || |||||| ||||||| ||||||||| |||||||
Sbjct: 377 gccgcttgatctcggcagctcctttcctcgagcctagccggtgctctggctccttcacaa 318
Query: 444 gcagccctctgatcagatctcgagcgtggaagcttacagctggattatcagggaacttca 503
||| ||||||||||||||| ||||| ||| |||| |||||||| |||||||||||||||
Sbjct: 317 gcaaccctctgatcagatcgcgagcctggtagctcacagctgggctatcagggaacttca 258
Query: 504 agccctgtgagatcacatttgagagtgtttcctcattgccaggtcccttgaatggtgtct 563
|||||||||| |||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct: 257 gcccctgtgagaccacatttgtaagtgtttcatcattgccaggtcccctgaatggtgtct 198
Query: 564 tgccatagagtaatt 578
|||||||||| ||||
Sbjct: 197 tgccatagagcaatt 183
Score = 60.0 bits (30), Expect = 8e-008
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 218 aagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgccttccttt 277
|||||||| |||||||||||||| || |||| |||||| || || || |||||||||||
Sbjct: 549 aagagctcaaactcgatgtcgtctccgttcatccggaactcgaggcacttgccttccttc 490
Query: 278 ttcttgcgtg 287
||||| ||||
Sbjct: 489 ttcttccgtg 480
>gb|BQ665321.1|BQ665321 HX03A05u HX Hordeum vulgare subsp. vulgare cDNA clone HX03A05
3-PRIME, mRNA sequence
Length = 594
Score = 198 bits (100), Expect = 1e-049
Identities = 187/216 (86%)
Strand = Plus / Plus
Query: 324 gggtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaagaagggat 383
||||||| || ||||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 379 gggtctccggcggtgcagtccaacggatcaaggcccagttcaggccttggaagaagggat 438
Query: 384 gccgcttaatctcagtggctcctctcgacgagccaagccggtactctggctctttcacaa 443
||||||| ||||| | |||||| || |||||| ||||||| ||||||||| |||||||
Sbjct: 439 gccgcttgatctcggcagctcctttcctcgagcctagccggtgctctggctccttcacaa 498
Query: 444 gcagccctctgatcagatctcgagcgtggaagcttacagctggattatcagggaacttca 503
||| ||||||||||||||| ||||| ||| |||| |||||||| |||||||||||||||
Sbjct: 499 gcaaccctctgatcagatcgcgagcctggtagctcacagctgggctatcagggaacttca 558
Query: 504 agccctgtgagatcacatttgagagtgtttcctcat 539
|||||||||| |||||||| |||||||| ||||
Sbjct: 559 gcccctgtgagaccacatttgtaagtgtttcatcat 594
Score = 60.0 bits (30), Expect = 8e-008
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 218 aagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgccttccttt 277
|||||||| |||||||||||||| || |||| |||||| || || || |||||||||||
Sbjct: 267 aagagctcaaactcgatgtcgtctccgttcatccggaactcgaggcacttgccttccttc 326
Query: 278 ttcttgcgtg 287
||||| ||||
Sbjct: 327 ttcttccgtg 336
Score = 58.0 bits (29), Expect = 3e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 30 atatttgatggtattaacaaggcataaagttacaggc 66
|||| ||||||||||||||||| ||||||||||||||
Sbjct: 27 atatctgatggtattaacaaggaataaagttacaggc 63
>gb|AJ432746.1|AJ432746 AJ432746 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200023G10F1, mRNA sequence
Length = 353
Score = 174 bits (88), Expect = 2e-042
Identities = 157/180 (87%)
Strand = Plus / Minus
Query: 324 gggtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaagaagggat 383
||||||| || ||||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 191 gggtctccggcggtgcagtccaacggatcaaggcccagttcaggccttggaagaagggat 132
Query: 384 gccgcttaatctcagtggctcctctcgacgagccaagccggtactctggctctttcacaa 443
||||||| ||||| | |||||| || |||||| ||||||| ||||||||| |||||||
Sbjct: 131 gccgcttgatctcggcagctcctttcctcgagcctagccggtgctctggctccttcacaa 72
Query: 444 gcagccctctgatcagatctcgagcgtggaagcttacagctggattatcagggaacttca 503
||| ||||||||||||||| ||||| ||| |||| |||||||| |||||||||||||||
Sbjct: 71 gcaaccctctgatcagatcgcgagcctggtagctcacagctgggctatcagggaacttca 12
Score = 60.0 bits (30), Expect = 8e-008
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 218 aagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgccttccttt 277
|||||||| |||||||||||||| || |||| |||||| || || || |||||||||||
Sbjct: 303 aagagctcaaactcgatgtcgtctccgttcatccggaactcgaggcacttgccttccttc 244
Query: 278 ttcttgcgtg 287
||||| ||||
Sbjct: 243 ttcttccgtg 234
>gb|CA025871.1|CA025871 HZ53G05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53G05
5-PRIME, mRNA sequence
Length = 548
Score = 172 bits (87), Expect = 8e-042
Identities = 156/179 (87%)
Strand = Plus / Minus
Query: 324 gggtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaagaagggat 383
||||||| || ||||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 179 gggtctccggcggtgcagtccaacggatcaaggcccagttcaggccttggaagaagggat 120
Query: 384 gccgcttaatctcagtggctcctctcgacgagccaagccggtactctggctctttcacaa 443
||||||| ||||| | |||||| || |||||| ||||||| ||||||||| |||||||
Sbjct: 119 gccgcttgatctcggcagctcctttcctcgagcctagccggtgctctggctccttcacaa 60
Query: 444 gcagccctctgatcagatctcgagcgtggaagcttacagctggattatcagggaacttc 502
||| ||||||||||||||| ||||| ||| |||| |||||||| ||||||||||||||
Sbjct: 59 gcaaccctctgatcagatcgcgagcctggtagctcacagctgggctatcagggaacttc 1
Score = 60.0 bits (30), Expect = 8e-008
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 218 aagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgccttccttt 277
|||||||| |||||||||||||| || |||| |||||| || || || |||||||||||
Sbjct: 291 aagagctcaaactcgatgtcgtctccgttcatccggaactcgaggcacttgccttccttc 232
Query: 278 ttcttgcgtg 287
||||| ||||
Sbjct: 231 ttcttccgtg 222
Score = 58.0 bits (29), Expect = 3e-007
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 30 atatttgatggtattaacaaggcataaagttacaggc 66
|||| ||||||||||||||||| ||||||||||||||
Sbjct: 531 atatctgatggtattaacaaggaataaagttacaggc 495
>gb|AL510395.1|AL510395 AL510395 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04M17u 3',
mRNA sequence
Length = 640
Score = 153 bits (77), Expect = 8e-036
Identities = 192/225 (85%), Gaps = 4/225 (1%)
Strand = Plus / Plus
Query: 324 gggtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaagaagggat 383
||||||| || ||||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 377 gggtctccggcggtgcagtccaacggatcaaggcccagttcaggccttggaagaagggat 436
Query: 384 gccgcttaatctcagtggctcctctcgacgagccaagccggtactctggctctttcacaa 443
||||||| ||||| | |||||| || |||||| ||||||| ||||||||| |||||||
Sbjct: 437 gccgcttgatctcggcagctcctttcctcgagcctagccggtgctctggctccttcacaa 496
Query: 444 gcagccctct-gatcagatctcgagcgtggaagcttacagctggattatc-agggaactt 501
||| |||||| ||||||||| ||||| ||| |||| |||||||| |||| |||||||||
Sbjct: 497 gcaaccctctggatcagatcgcgagcctggtagctcacagctgggctatcaagggaactt 556
Query: 502 caagccct-gtgagatcac-atttgagagtgtttcctcattgcca 544
|| |||| |||||| ||| ||||| |||||||| |||||||||
Sbjct: 557 cagcccctggtgagaccacaatttgtaagtgtttcatcattgcca 601
Score = 60.0 bits (30), Expect = 8e-008
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 218 aagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgccttccttt 277
|||||||| |||||||||||||| || |||| |||||| || || || |||||||||||
Sbjct: 265 aagagctcaaactcgatgtcgtctccgttcatccggaactcgaggcacttgccttccttc 324
Query: 278 ttcttgcgtg 287
||||| ||||
Sbjct: 325 ttcttccgtg 334
Score = 58.0 bits (29), Expect = 3e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 30 atatttgatggtattaacaaggcataaagttacaggc 66
|||| ||||||||||||||||| ||||||||||||||
Sbjct: 25 atatctgatggtattaacaaggaataaagttacaggc 61
>gb|BQ663490.1|BQ663490 HU02N24u HU Hordeum vulgare subsp. vulgare cDNA clone HU02N24
3-PRIME, mRNA sequence
Length = 488
Score = 117 bits (59), Expect = 4e-025
Identities = 107/123 (86%)
Strand = Plus / Plus
Query: 324 gggtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaagaagggat 383
||||||| || ||||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 363 gggtctccggcggtgcagtccaacggatcaaggcccagttcaggccttggaagaagggat 422
Query: 384 gccgcttaatctcagtggctcctctcgacgagccaagccggtactctggctctttcacaa 443
||||||| ||||| | |||||| || |||||| ||||||| ||||||||| |||||||
Sbjct: 423 gccgcttgatctcggcagctcctttcctcgagcctagccggtgctctggctccttcacaa 482
Query: 444 gca 446
|||
Sbjct: 483 gca 485
Score = 60.0 bits (30), Expect = 8e-008
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 218 aagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgccttccttt 277
|||||||| |||||||||||||| || |||| |||||| || || || |||||||||||
Sbjct: 251 aagagctcaaactcgatgtcgtctccgttcatccggaactcgaggcacttgccttccttc 310
Query: 278 ttcttgcgtg 287
||||| ||||
Sbjct: 311 ttcttccgtg 320
Score = 58.0 bits (29), Expect = 3e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 30 atatttgatggtattaacaaggcataaagttacaggc 66
|||| ||||||||||||||||| ||||||||||||||
Sbjct: 11 atatctgatggtattaacaaggaataaagttacaggc 47
>gb|BQ665408.1|BQ665408 HX03H14u HX Hordeum vulgare subsp. vulgare cDNA clone HX03H14
3-PRIME, mRNA sequence
Length = 413
Score = 60.0 bits (30), Expect = 8e-008
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 218 aagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgccttccttt 277
|||||||| |||||||||||||| || |||| |||||| || || || |||||||||||
Sbjct: 267 aagagctcaaactcgatgtcgtctccgttcatccggaactcgaggcacttgccttccttc 326
Query: 278 ttcttgcgtg 287
||||| ||||
Sbjct: 327 ttcttccgtg 336
Score = 58.0 bits (29), Expect = 3e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 30 atatttgatggtattaacaaggcataaagttacaggc 66
|||| ||||||||||||||||| ||||||||||||||
Sbjct: 27 atatctgatggtattaacaaggaataaagttacaggc 63
Score = 38.2 bits (19), Expect = 0.31
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 324 gggtctctggtggtgcggtccaccggatcaaggcc 358
||||||| || ||||| ||||| ||||||||||||
Sbjct: 379 gggtctccggcggtgcagtccaacggatcaaggcc 413
>gb|CB875785.1|CB875785 HX09F12w HX Hordeum vulgare subsp. vulgare cDNA clone HX09F12
3-PRIME, mRNA sequence
Length = 660
Score = 48.1 bits (24), Expect = 3e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcc 405
|||| ||||||||||| || ||||||||||| ||| |||| ||||| ||||||||
Sbjct: 482 atcagggcccagttcacaccctcaaagaaggggtgctgctttatctccgtggctcc 537
>gb|BM373863.2|BM373863 EBma03_SQ002_P07_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ002_P07 5', mRNA sequence
Length = 269
Score = 44.1 bits (22), Expect = 0.005
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 218 aagagctcgaactcgatgtcgtcaccattcagccggaa 255
|||||||| |||||||||||||| || |||| ||||||
Sbjct: 53 aagagctcaaactcgatgtcgtctccgttcatccggaa 16
>gb|AL510339.1|AL510339 AL510339 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04K03u 3',
mRNA sequence
Length = 649
Score = 42.1 bits (21), Expect = 0.020
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaa 378
|||||||||||||||| |||||||||||
Sbjct: 417 atcaaggcccagttcaacccttcaaagaa 445
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 47,967
Number of Sequences: 312970
Number of extensions: 47967
Number of successful extensions: 14255
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14210
Number of HSP's gapped (non-prelim): 38
length of query: 578
length of database: 175,134,539
effective HSP length: 19
effective length of query: 559
effective length of database: 169,188,109
effective search space: 94576152931
effective search space used: 94576152931
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)