BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2623104.2.3
(1540 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM442515.2|BM442515 EBan01_SQ003_G09_R anther, yellow st... 274 8e-072
gb|BQ764168.1|BQ764168 EBan01_SQ005_F02_R anther, yellow st... 208 4e-052
gb|BQ753595.1|BQ753595 EBan01_SQ004_L07_R anther, yellow st... 206 2e-051
gb|BM442473.2|BM442473 EBan01_SQ003_E14_R anther, yellow st... 204 6e-051
gb|BM442620.2|BM442620 EBan01_SQ003_L02_R anther, yellow st... 192 2e-047
gb|BQ753283.1|BQ753283 EBan01_SQ001_C11_R anther, yellow st... 180 9e-044
gb|BM442145.2|BM442145 EBan01_SQ002_F12_R anther, yellow st... 119 3e-025
gb|BQ753380.1|BQ753380 EBan01_SQ004_B18_R anther, yellow st... 86 4e-015
gb|CB881820.1|CB881820 HM10P12w HM Hordeum vulgare subsp. v... 62 6e-008
gb|AL506753.1|AL506753 AL506753 Hordeum vulgare Barke devel... 54 1e-005
gb|BG301028.1|BG301028 HVSMEb0019E22f Hordeum vulgare seedl... 52 6e-005
gb|BI957299.1|BI957299 HVSMEn0008L17f Hordeum vulgare rachi... 44 0.014
gb|BM816530.1|BM816530 HC105H06_T3.ab1 HC Hordeum vulgare s... 42 0.054
gb|BM816531.1|BM816531 HC110H09_T3.ab1 HC Hordeum vulgare s... 42 0.054
gb|BM816532.1|BM816532 HC105H05_T3.ab1 HC Hordeum vulgare s... 42 0.054
gb|BM816533.1|BM816533 HC105F06_T3.ab1 HC Hordeum vulgare s... 42 0.054
gb|BM816534.1|BM816534 HC109E06_T3.ab1 HC Hordeum vulgare s... 42 0.054
gb|BM816535.1|BM816535 HC105H02_T3.ab1 HC Hordeum vulgare s... 42 0.054
gb|BM816536.1|BM816536 HC114C11_SK.ab1 HC Hordeum vulgare s... 42 0.054
gb|BM816537.1|BM816537 HC108A03_SK.ab1 HC Hordeum vulgare s... 42 0.054
gb|BM817360.1|BM817360 HC106B05_T3.ab1 HC Hordeum vulgare s... 42 0.054
gb|AL506416.1|AL506416 AL506416 Hordeum vulgare Barke devel... 40 0.21
gb|CA014958.1|CA014958 HT12N15r HT Hordeum vulgare subsp. v... 40 0.21
>gb|BM442515.2|BM442515 EBan01_SQ003_G09_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_G09 5', mRNA sequence
Length = 588
Score = 274 bits (138), Expect = 8e-072
Identities = 359/432 (83%), Gaps = 3/432 (0%)
Strand = Plus / Plus
Query: 775 cggcgtgacctgcggccccggccacggcatcagcatcggcagcctagggcggtacaagga 834
|||||||||||||||||| |||||||||||||| || |||||||| ||| ||||||||||
Sbjct: 2 cggcgtgacctgcggcccaggccacggcatcagtattggcagcctcgggaggtacaagga 61
Query: 835 cgagaaggacgtcacggatatcaacgtcaaggactgcacgcttaagaagacggccaacgg 894
|||||||||||| || || ||| |||||||| ||||| | | ||| | |||||||
Sbjct: 62 cgagaaggacgtgaccgacatccacgtcaagaactgcgtgttcaagggatccaccaacgg 121
Query: 895 cgtccgcatcaaggcgtatgaggacgccgcctccgtgctcaccgcctccaagatccacta 954
| ||||||||||| |||| |||||| || ||| ||| ||| ||||||||| |||
Sbjct: 122 cctccgcatcaagtcgtacgaggactccaagtcccccctcgtcgcgtccaagatcagcta 181
Query: 955 tgagaatatcaagatggaggactcgggctaccccatcatcatcgacatgaagtactgccc 1014
||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 182 cgagaacatcaagatggacgactcgggctaccccatcatcatcgatcagaagtactgccc 241
Query: 1015 caacaagttatgcaccgccaatggtg---cctccaaggtcaccgtcaaggacgtcacctt 1071
|||||| | ||||||||||| || | |||||| |||||||||||||||||| |||||
Sbjct: 242 caacaaactctgcaccgccaagggcgactcctccagggtcaccgtcaaggacgttacctt 301
Query: 1072 caagaacatcaccggcacctcctccaccccggaggccgtcaacctgctctgctctgccaa 1131
||| |||||||||||||||||||||||||| |||||||||| |||||||||||| | |||
Sbjct: 302 caaaaacatcaccggcacctcctccacccctgaggccgtcagcctgctctgctccgacaa 361
Query: 1132 gatcccatgcaccggcgtcaccatggacgacgtcaacatcaagtacagtggcaccaacaa 1191
| || ||| |||||||| ||| ||||||||| ||| ||||| |||| |||||
Sbjct: 362 aaagccttgcgaaggcgtcacaatgtccgacgtcaagatcgagtactccggcaagaacaa 421
Query: 1192 caagaccatggc 1203
||||||||||||
Sbjct: 422 caagaccatggc 433
>gb|BQ764168.1|BQ764168 EBan01_SQ005_F02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_F02 5', mRNA sequence
Length = 693
Score = 208 bits (105), Expect = 4e-052
Identities = 266/319 (83%), Gaps = 3/319 (0%)
Strand = Plus / Plus
Query: 888 ccaacggcgtccgcatcaaggcgtatgaggacgccgcctccgtgctcaccgcctccaaga 947
|||||||| ||||||||||| |||| |||||| || ||| ||| ||| |||||||
Sbjct: 57 ccaacggcctccgcatcaagtcgtacgaggactccaagtcccccctcgtcgcgtccaaga 116
Query: 948 tccactatgagaatatcaagatggaggactcgggctaccccatcatcatcgacatgaagt 1007
|| ||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 117 tcagctacgagaacatcaagatggacgactcgggctaccccatcatcatcgatcagaagt 176
Query: 1008 actgccccaacaagttatgcaccgccaatggtg---cctccaaggtcaccgtcaaggacg 1064
||||||||||||| | ||||||||||| || | |||||| |||||||||||||||||
Sbjct: 177 actgccccaacaaactctgcaccgccaagggcgactcctccagggtcaccgtcaaggacg 236
Query: 1065 tcaccttcaagaacatcaccggcacctcctccaccccggaggccgtcaacctgctctgct 1124
| |||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 237 ttaccttcaaaaacatcaccggcacctcctccacccctgaggccgtcagcctgctctgct 296
Query: 1125 ctgccaagatcccatgcaccggcgtcaccatggacgacgtcaacatcaagtacagtggca 1184
| | ||| | || ||| |||||||| ||| ||||||||| ||| ||||| ||||
Sbjct: 297 ccgacaaaaagccttgcgaaggcgtcacaatgtccgacgtcaagatcgagtactccggca 356
Query: 1185 ccaacaacaagaccatggc 1203
|||||||||||||||||
Sbjct: 357 agaacaacaagaccatggc 375
>gb|BQ753595.1|BQ753595 EBan01_SQ004_L07_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_L07 5', mRNA sequence
Length = 436
Score = 206 bits (104), Expect = 2e-051
Identities = 226/266 (84%), Gaps = 3/266 (1%)
Strand = Plus / Plus
Query: 941 tccaagatccactatgagaatatcaagatggaggactcgggctaccccatcatcatcgac 1000
||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 50 tccaagatcagctacgagaacatcaagatggacgactcgggctaccccatcatcatcgat 109
Query: 1001 atgaagtactgccccaacaagttatgcaccgccaatggtg---cctccaaggtcaccgtc 1057
|||||||||||||||||| | ||||||||||| || | |||||| ||||||||||
Sbjct: 110 cagaagtactgccccaacaaactctgcaccgccaagggcgactcctccagggtcaccgtc 169
Query: 1058 aaggacgtcaccttcaagaacatcaccggcacctcctccaccccggaggccgtcaacctg 1117
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 170 aaggacgttaccttcaaaaacatcaccggcacctcctccacccctgaggccgtcagcctg 229
Query: 1118 ctctgctctgccaagatcccatgcaccggcgtcaccatggacgacgtcaacatcaagtac 1177
|||||||| | ||| | || ||| |||||||| ||| ||||||||| ||| |||||
Sbjct: 230 ctctgctccgacaaaaagccttgcgaaggcgtcacaatgtccgacgtcaagatcgagtac 289
Query: 1178 agtggcaccaacaacaagaccatggc 1203
|||| |||||||||||||||||
Sbjct: 290 tccggcaagaacaacaagaccatggc 315
>gb|BM442473.2|BM442473 EBan01_SQ003_E14_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_E14 5', mRNA sequence
Length = 454
Score = 204 bits (103), Expect = 6e-051
Identities = 207/241 (85%), Gaps = 3/241 (1%)
Strand = Plus / Plus
Query: 888 ccaacggcgtccgcatcaaggcgtatgaggacgccgcctccgtgctcaccgcctccaaga 947
|||||||| ||||||||||| |||| |||||| || ||| ||| ||| |||||||
Sbjct: 22 ccaacggcctccgcatcaagtcgtacgaggactccaagtcccccctcgtcgcgtccaaga 81
Query: 948 tccactatgagaatatcaagatggaggactcgggctaccccatcatcatcgacatgaagt 1007
|| ||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 82 tcagctacgagaacatcaagatggacgactcgggctaccccatcatcatcgatcagaagt 141
Query: 1008 actgccccaacaagttatgcaccgccaatggtg---cctccaaggtcaccgtcaaggacg 1064
||||||||||||| | ||||||||||| || | |||||| |||||||||||||||||
Sbjct: 142 actgccccaacaaactctgcaccgccaagggcgactcctccagggtcaccgtcaaggacg 201
Query: 1065 tcaccttcaagaacatcaccggcacctcctccaccccggaggccgtcaacctgctctgct 1124
| |||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 202 ttaccttcaaaaacatcaccggcacctcctccacccctgaggccgtcagcctgctctgct 261
Query: 1125 c 1125
|
Sbjct: 262 c 262
>gb|BM442620.2|BM442620 EBan01_SQ003_L02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_L02 5', mRNA sequence
Length = 377
Score = 192 bits (97), Expect = 2e-047
Identities = 301/369 (81%)
Strand = Plus / Plus
Query: 667 cggcatccacatgggcgactcgtccggggtcaccatcaccaacaccgtcatcggcgtcgg 726
||||||||||||||||||||||||| |||| ||||| | ||||| ||||| ||| ||
Sbjct: 1 cggcatccacatgggcgactcgtccaatgtcaacatcatcgacaccaccatcgccgttgg 60
Query: 727 cgacgactgcatctccatcggccccgggacctccaaggtgaacatcaccggcgtgacctg 786
|||||| |||||||||||||||||||| || | || ||||||| ||||||||||||
Sbjct: 61 cgacgattgcatctccatcggccccggctccaaacaagtcaacatcagcggcgtgacctg 120
Query: 787 cggccccggccacggcatcagcatcggcagcctagggcggtacaaggacgagaaggacgt 846
|||||| ||||||||||||| || |||||||| ||| ||||||||||||||||||||||
Sbjct: 121 cggcccaagccacggcatcagtattggcagcctcgggaggtacaaggacgagaaggacgt 180
Query: 847 cacggatatcaacgtcaaggactgcacgcttaagaagacggccaacggcgtccgcatcaa 906
|| || ||| |||||||| ||||| | | ||| | |||||||| ||||||||||
Sbjct: 181 gaccgacatccacgtcaagaactgcgtgttcaagggatccaccaacggcctccgcatcaa 240
Query: 907 ggcgtatgaggacgccgcctccgtgctcaccgcctccaagatccactatgagaatatcaa 966
| |||| |||||| || ||| ||| ||| ||||||||| ||| ||||| |||||
Sbjct: 241 gtcgtacgaggactccaagtcccccctcgtcgcgtccaagatcagctacgagaacatcaa 300
Query: 967 gatggaggactcgggctaccccatcatcatcgacatgaagtactgccccaacaagttatg 1026
|||||| ||||| ||||||||||||||||||| ||||||||||||| |||| | ||
Sbjct: 301 gatggacgactcaagctaccccatcatcatcgatcagaagtactgcccccacaaactctg 360
Query: 1027 caccgccaa 1035
|||||||||
Sbjct: 361 caccgccaa 369
>gb|BQ753283.1|BQ753283 EBan01_SQ001_C11_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_C11 5', mRNA sequence
Length = 647
Score = 180 bits (91), Expect = 9e-044
Identities = 198/233 (84%), Gaps = 3/233 (1%)
Strand = Plus / Plus
Query: 974 gactcgggctaccccatcatcatcgacatgaagtactgccccaacaagttatgcaccgcc 1033
|||||||||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct: 4 gactcgggctaccccatcatcatcgatcagaagtactgccccaacaaactctgcaccgcc 63
Query: 1034 aatggtg---cctccaaggtcaccgtcaaggacgtcaccttcaagaacatcaccggcacc 1090
|| || | |||||| |||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 64 aagggcgactcctccagggtcaccgtcaaggacgttaccttcaaaaacatcaccggcacc 123
Query: 1091 tcctccaccccggaggccgtcaacctgctctgctctgccaagatcccatgcaccggcgtc 1150
||||||||||| |||||||||| |||||||||||| | ||| | || ||| ||||||
Sbjct: 124 tcctccacccctgaggccgtcagcctgctctgctccgacaaaaagccttgcgaaggcgtc 183
Query: 1151 accatggacgacgtcaacatcaagtacagtggcaccaacaacaagaccatggc 1203
|| ||| ||||||||| ||| ||||| |||| |||||||||||||||||
Sbjct: 184 acaatgtccgacgtcaagatcgagtactccggcaagaacaacaagaccatggc 236
>gb|BM442145.2|BM442145 EBan01_SQ002_F12_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_F12 5', mRNA sequence
Length = 311
Score = 119 bits (60), Expect = 3e-025
Identities = 105/120 (87%)
Strand = Plus / Plus
Query: 570 tcaactccaagttcttccacatgaacatgtacaagtgcaaggacatgctgatcaaggacg 629
|||| ||||||||||||||||||||||| ||| ||||||| | | || | |||| ||||
Sbjct: 160 tcaattccaagttcttccacatgaacatctacgagtgcaaaggcgtgatcgtcaaagacg 219
Query: 630 tcaatgtgacggcgcccggggacagccccaacacggacggcatccacatgggcgactcgt 689
| || |||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 220 tgaaagtgagcgcgcccggggacagccccaacaccgacggcatccacatgggcgactcgt 279
>gb|BQ753380.1|BQ753380 EBan01_SQ004_B18_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_B18 5', mRNA sequence
Length = 431
Score = 85.7 bits (43), Expect = 4e-015
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 185 ggcaagacggatagcacgaaggctgtgcaggaggcgtgggcatcggcgtgcggcggcacc 244
|||||||| || ||||| || || ||| ||||||| ||||| |||||||||||||||||
Sbjct: 190 ggcaagactgacagcaccaaagcggtggaggaggcatgggcttcggcgtgcggcggcaca 249
Query: 245 gggaagcagacgatcctcatccccaagggcgacttcctcgtcggaccactcaacttcaca 304
|| |||||||||||| |||||||||| || || ||||| ||| | || || |||||
Sbjct: 250 ggcaagcagacgatcgtcatccccaaaggtgatttcctgactggagctctaaatttcacg 309
Query: 305 ggcccatgcaagggcgacg 323
|| ||||||||||||||||
Sbjct: 310 gggccatgcaagggcgacg 328
>gb|CB881820.1|CB881820 HM10P12w HM Hordeum vulgare subsp. vulgare cDNA clone HM10P12
3-PRIME, mRNA sequence
Length = 608
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 640 ggcgcccggggacagccccaacacggacggcatccacatgggcgactcgtccggggtcac 699
|||||| ||||||||||||||||| |||||||||||| ||| ||| || ||| ||| ||
Sbjct: 221 ggcgccgggggacagccccaacaccgacggcatccacgtggccgagtccaccgcggtgac 280
Query: 700 catcacc 706
|||||||
Sbjct: 281 catcacc 287
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 785 tgcggccccggccacggcatcagcatcggcagcctagggc 824
|||| ||| |||||||||||||||||||||||||| ||||
Sbjct: 366 tgcgacccgggccacggcatcagcatcggcagcctggggc 405
>gb|AL506753.1|AL506753 AL506753 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04C10T 5',
mRNA sequence
Length = 507
Score = 54.0 bits (27), Expect = 1e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 794 ggccacggcatcagcatcggcagcctagggc 824
|||||||||||||||||||||||||| ||||
Sbjct: 14 ggccacggcatcagcatcggcagcctggggc 44
>gb|BG301028.1|BG301028 HVSMEb0019E22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019E22f, mRNA sequence
Length = 635
Score = 52.0 bits (26), Expect = 6e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 647 ggggacagccccaacacggacggcatccac 676
||||||||||||||||| ||||||||||||
Sbjct: 540 ggggacagccccaacaccgacggcatccac 569
>gb|BI957299.1|BI957299 HVSMEn0008L17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0008L17f, mRNA sequence
Length = 458
Score = 44.1 bits (22), Expect = 0.014
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 782 acctgcggccccggccacggcatcagcatcggcagcct 819
|||||||||||||||||||| |||| ||| || |||||
Sbjct: 322 acctgcggccccggccacgggatcatcattgggagcct 359
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 653 agccccaacacggacggcatccac 676
||||||||||| ||||||||||||
Sbjct: 193 agccccaacaccgacggcatccac 216
>gb|BM816530.1|BM816530 HC105H06_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105H06_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 907
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1514 gtcgacgcggccgcgaattcc 1534
|||||||||||||||||||||
Sbjct: 32 gtcgacgcggccgcgaattcc 12
>gb|BM816531.1|BM816531 HC110H09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC110H09_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 917
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1514 gtcgacgcggccgcgaattcc 1534
|||||||||||||||||||||
Sbjct: 32 gtcgacgcggccgcgaattcc 12
>gb|BM816532.1|BM816532 HC105H05_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105H05_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 864
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1514 gtcgacgcggccgcgaattcc 1534
|||||||||||||||||||||
Sbjct: 32 gtcgacgcggccgcgaattcc 12
>gb|BM816533.1|BM816533 HC105F06_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105F06_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 911
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1514 gtcgacgcggccgcgaattcc 1534
|||||||||||||||||||||
Sbjct: 32 gtcgacgcggccgcgaattcc 12
>gb|BM816534.1|BM816534 HC109E06_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109E06_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 916
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1514 gtcgacgcggccgcgaattcc 1534
|||||||||||||||||||||
Sbjct: 32 gtcgacgcggccgcgaattcc 12
>gb|BM816535.1|BM816535 HC105H02_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105H02_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 927
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1514 gtcgacgcggccgcgaattcc 1534
|||||||||||||||||||||
Sbjct: 32 gtcgacgcggccgcgaattcc 12
>gb|BM816536.1|BM816536 HC114C11_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC114C11_SK.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 865
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1514 gtcgacgcggccgcgaattcc 1534
|||||||||||||||||||||
Sbjct: 32 gtcgacgcggccgcgaattcc 12
>gb|BM816537.1|BM816537 HC108A03_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC108A03_SK.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 895
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1514 gtcgacgcggccgcgaattcc 1534
|||||||||||||||||||||
Sbjct: 32 gtcgacgcggccgcgaattcc 12
>gb|BM817360.1|BM817360 HC106B05_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC106B05_T3.ab1 similar to (AC007369) Sugar transporter
[Arabidopsis thaliana], mRNA sequence
Length = 859
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1514 gtcgacgcggccgcgaattcc 1534
|||||||||||||||||||||
Sbjct: 32 gtcgacgcggccgcgaattcc 12
>gb|AL506416.1|AL506416 AL506416 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03A18T 5',
mRNA sequence
Length = 677
Score = 40.1 bits (20), Expect = 0.21
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 794 ggccacggcatcag-catcggcagcctagggc 824
|||||||||||||| |||||||||||| ||||
Sbjct: 14 ggccacggcatcaggcatcggcagcctggggc 45
>gb|CA014958.1|CA014958 HT12N15r HT Hordeum vulgare subsp. vulgare cDNA clone HT12N15
5-PRIME, mRNA sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1163 gtcaacatcaagtacagtgg 1182
||||||||||||||||||||
Sbjct: 166 gtcaacatcaagtacagtgg 185
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 223,286
Number of Sequences: 312970
Number of extensions: 223286
Number of successful extensions: 66092
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 66024
Number of HSP's gapped (non-prelim): 64
length of query: 1540
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1521
effective length of database: 169,188,109
effective search space: 257335113789
effective search space used: 257335113789
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)