BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619423.2.1
(886 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU978006.1|BU978006 HA12G16r HA Hordeum vulgare subsp. v... 297 3e-079
gb|BF256845.2|BF256845 HVSMEf0011C19f Hordeum vulgare seedl... 234 4e-060
gb|CB859459.1|CB859459 HI10I05w HI Hordeum vulgare subsp. v... 200 6e-050
gb|BM815962.1|BM815962 HB108B11_SK.ab1 HB Hordeum vulgare s... 198 2e-049
gb|CA016620.1|CA016620 HV08A21u HV Hordeum vulgare subsp. v... 178 2e-043
gb|AL500666.1|AL500666 AL500666 Hordeum vulgare Barke roots... 161 5e-038
gb|BM444360.1|BM444360 EBem09_SQ004_O20_R embryo, 1 Day ger... 153 1e-035
gb|BU994209.1|BU994209 HM06C21r HM Hordeum vulgare subsp. v... 153 1e-035
gb|CB859645.1|CB859645 HI11B21w HI Hordeum vulgare subsp. v... 153 1e-035
gb|CB880111.1|CB880111 HM05I10w HM Hordeum vulgare subsp. v... 153 1e-035
gb|CB880317.1|CB880317 HM06C21w HM Hordeum vulgare subsp. v... 153 1e-035
gb|CB881379.1|CB881379 HM09K05w HM Hordeum vulgare subsp. v... 153 1e-035
gb|CB881920.1|CB881920 HM11E21w HM Hordeum vulgare subsp. v... 153 1e-035
gb|BU977225.1|BU977225 HA11A22r HA Hordeum vulgare subsp. v... 145 3e-033
gb|CB882717.1|CB882717 HL02K11w HL Hordeum vulgare subsp. v... 145 3e-033
gb|BU977226.1|BU977226 HA11A22u HA Hordeum vulgare subsp. v... 131 4e-029
gb|BM097912.2|BM097912 EBpi03_SQ002_A12_R pistil, 4 DPA, no... 121 4e-026
gb|CD663895.1|CD663895 UCRHV18_07aa08_b1 Drought-stressed D... 113 1e-023
gb|AL503281.1|AL503281 AL503281 Hordeum vulgare Barke roots... 62 3e-008
gb|BG417675.1|BG417675 HVSMEk0019B08f Hordeum vulgare testa... 54 8e-006
gb|BU995236.1|BU995236 HM09K05r HM Hordeum vulgare subsp. v... 40 0.12
gb|BF618963.3|BF618963 HVSMEc0008N18f Hordeum vulgare seedl... 38 0.48
>gb|BU978006.1|BU978006 HA12G16r HA Hordeum vulgare subsp. vulgare cDNA clone HA12G16
5-PRIME, mRNA sequence
Length = 543
Score = 297 bits (150), Expect = 3e-079
Identities = 423/514 (82%)
Strand = Plus / Plus
Query: 8 cggttcagcacatatgcagtgctagcggcacatgtctggaaatgtgtctcccttgcacgc 67
||||||||||| |||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct: 30 cggttcagcacgtatgcagtgctagctgcacatgtctggcgctgtgtctcccttgcgcgc 89
Query: 68 agcctacctcctgaacaacccaccaagttgtattgcgccactgatggccgtcaaacgcta 127
| ||| |||| ||||| ||||||||| ||||||||||||| ||||| || ||| |||
Sbjct: 90 aacctggctccggaacagcccaccaagctgtattgcgccaccgatgggcgacaacggctg 149
Query: 128 cagcctccactaccagatgggtactttggcaatgtcatcttcaccgcgacaccacttgct 187
||||| || || ||||| || |||||||| ||||||||||||||||| || || || |||
Sbjct: 150 cagcccccgctgccagaaggttactttgggaatgtcatcttcaccgccaccccgctcgct 209
Query: 188 gaggcgggcaaggtgaccagtgagctggcagaaggagcagcagtcatccagggagcactg 247
||||| |||||||| || || | |||||| ||||||||||| |||||||||||||| ||
Sbjct: 210 gaggcaggcaaggttacgagcgggctggcggaaggagcagcggtcatccagggagcgcta 269
Query: 248 gataggatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggat 307
|| |||||| | ||||||||||| ||||| | |||||||||||| | || |||||
Sbjct: 270 gacaggatgactagcgactactgccaatcagccctggactacctggagatgcagccggac 329
Query: 308 ctgtcagcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagc 367
||||||||| | || |||||||| || || ||||| ||||| ||||| || |||||||||
Sbjct: 330 ctgtcagcattggtccgtggagcacacactttccggtgccccaacctcggcctcaccagc 389
Query: 368 tgggtgcgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatgggg 427
||||||||||| || ||||| || || || || || ||||| |||| |||||||||||
Sbjct: 390 tgggtgcgcctgccgatccacgacgccgattttggctgggggaggccggtgttcatgggt 449
Query: 428 ccaggtggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggc 487
|| || ||||| ||||| || || |||||||| |||||||| || || | ||||||
Sbjct: 450 cctggcggcatcgcgtacgaggggctggcgttcgtcctcccgagcgcgagcaaggacggc 509
Query: 488 agcctgtccattgctatctcgttgcaggctgagc 521
||||||||||| || |||||||||||||| ||||
Sbjct: 510 agcctgtccatcgccatctcgttgcaggcggagc 543
>gb|BF256845.2|BF256845 HVSMEf0011C19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011C19f, mRNA sequence
Length = 582
Score = 234 bits (118), Expect = 4e-060
Identities = 414/510 (81%), Gaps = 2/510 (0%)
Strand = Plus / Plus
Query: 35 gcacatgtctggaaatgtgtctcccttgcacgcagcctacctcctgaacaacccaccaag 94
|||||||||||| || ||||||||||| |||| ||| |||| ||||| |||||||||
Sbjct: 3 gcacatgtctggcgctgcgtctcccttgcgcgcaacctggctccggaacagcccaccaag 62
Query: 95 ttgtattgcgccactgatggccgtcaaacgctacagcctccactaccagatgggtacttt 154
||||||||||||| ||||| || ||| ||| ||||| || || ||||| || ||||||
Sbjct: 63 ctgtattgcgccaccgatgggcgacaacggctgcagcccccgctgccagaaggttacttt 122
Query: 155 ggcaatgtcatcttcaccgcgacaccacttgctgaggcgggcaaggtgaccagtgagctg 214
|| ||||||||||||||||| || || || || ||||| |||||||| || || | ||||
Sbjct: 123 gggaatgtcatcttcaccgccaccccgctcgccgaggcaggcaaggttacgagcgggctg 182
Query: 215 gcagaaggagcagcagtcatccagggagcactggataggatggacaacgactactgccgc 274
|| ||||||||||| |||||||||||||| || || |||||| |||||||||||
Sbjct: 183 gcggaaggagcagcggtcatccagggagcgctagacaggatgactggcgactactgccaa 242
Query: 275 tcagcgttagactacctggagcttcaaccggatctgtcagcacttgtgcgtggagcgcat 334
||||| | |||||||||||| | || ||||| ||||||||| | || |||||||| ||
Sbjct: 243 tcagccctggactacctggagatgcagccggacctgtcagcattggtccgtggagcacac 302
Query: 335 accttccgctgcccgaacctagggctcaccagctgggtgcgccttcctatccatgatgct 394
|| ||||| ||||| ||||| || |||||||||||||||||||| || ||||| || ||
Sbjct: 303 actttccggtgccccaacctcggcctcaccagctgggtgcgcctgccgatccacgacgcc 362
Query: 395 gacttcggatggggccggcctgtgttcatggggccaggtggcattgcgtatgaaggtctg 454
|| || || ||||| |||| ||||||||||| || || |||| | |||| || || |||
Sbjct: 363 gattttggctgggggaggccggtgttcatgggtcctggcggca-tccgtacgaggggctg 421
Query: 455 gcgtttgtcctcccaagtgcaaatggcgacggcagcctgtccattgctatc-tcgttgca 513
||||| |||||||| || || | ||| | |||||||||||||| ||| ||||||||
Sbjct: 422 gcgttcgtcctcccgagcgcgagcaaggaccggagcctgtccattgccatcttcgttgca 481
Query: 514 ggctgagcacatggagaagttccggaagct 543
||| ||||||||||||||||||||| ||||
Sbjct: 482 ggcggagcacatggagaagttccgggagct 511
>gb|CB859459.1|CB859459 HI10I05w HI Hordeum vulgare subsp. vulgare cDNA clone HI10I05
3-PRIME, mRNA sequence
Length = 538
Score = 200 bits (101), Expect = 6e-050
Identities = 275/333 (82%)
Strand = Plus / Minus
Query: 211 gctggcagaaggagcagcagtcatccagggagcactggataggatggacaacgactactg 270
|||||| ||||||||||| |||||||||||||| || || |||||| | |||||||||
Sbjct: 531 gctggcggaaggagcagcggtcatccagggagcgctagacaggatgactagcgactactg 472
Query: 271 ccgctcagcgttagactacctggagcttcaaccggatctgtcagcacttgtgcgtggagc 330
|| ||||| | |||||||||||| | || ||||| ||||||||| | || ||||||||
Sbjct: 471 ccaatcagccctggactacctggagatgcagccggacctgtcagcattggtccgtggagc 412
Query: 331 gcataccttccgctgcccgaacctagggctcaccagctgggtgcgccttcctatccatga 390
|| || ||||| ||||| ||||| || |||||||||||||||||||| || ||||| ||
Sbjct: 411 acacactttccggtgccccaacctcggcctcaccagctgggtgcgcctgccgatccacga 352
Query: 391 tgctgacttcggatggggccggcctgtgttcatggggccaggtggcattgcgtatgaagg 450
|| || || || ||||| |||| ||||||||||| || || ||||| ||||| || ||
Sbjct: 351 cgccgattttggctgggggaggccggtgttcatgggtcctggcggcatcgcgtacgaggg 292
Query: 451 tctggcgtttgtcctcccaagtgcaaatggcgacggcagcctgtccattgctatctcgtt 510
|||||||| |||||||| || || | ||||||||||||||||| || ||||||||
Sbjct: 291 gctggcgttcgtcctcccgagcgcgagcaaggacggcagcctgtccatcgccatctcgtt 232
Query: 511 gcaggctgagcacatggagaagttccggaagct 543
|||||| ||||||||||||||||||||||||||
Sbjct: 231 gcaggcggagcacatggagaagttccggaagct 199
>gb|BM815962.1|BM815962 HB108B11_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB108B11_SK.ab1 similar to Anthranilate
N-benzoyltransferase,Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 882
Score = 198 bits (100), Expect = 2e-049
Identities = 301/366 (82%), Gaps = 2/366 (0%)
Strand = Plus / Plus
Query: 8 cggttcagcacatatgcagtgctagcggcacatgtctggaaatgtgtctcccttgcacgc 67
|||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct: 500 cggttcagcacatatgcagtgctagctgcacatgtctggcgctgtgtctcccttgcgcgc 559
Query: 68 agcctacctcctgaacaacccaccaagttgtattgcgccactgatggccgtcaaacgcta 127
| ||| |||| ||||| ||||||||| ||||||||||||| ||||| || ||| |||
Sbjct: 560 aacctggctccggaacagcccaccaagctgtattgcgccaccgatgggcgacaacggctg 619
Query: 128 cagcctccactaccagatgggtactttggcaatgtcatcttcaccgcgacaccacttgct 187
||||| || || ||||| || |||||||| ||||||||||||||||| || || || ||
Sbjct: 620 cagcccccgctgccagaaggttactttgggaatgtcatcttcaccgccaccccgctcgcc 679
Query: 188 gaggcgggcaaggtgaccagtgagctggcagaaggagcagcagtcatccagggagcactg 247
||||| |||||||| || || | |||||| ||||||||||| |||||||||||||| ||
Sbjct: 680 gaggcaggcaaggttacgagcgggctggcggaaggagcagcggtcatccagggagcgcta 739
Query: 248 gataggatggacaacgactactgccgctcag-cgttagactacctggagcttcaaccgga 306
|| |||||| | |||||||||| |||| | | |||||||||||| | || |||||
Sbjct: 740 gacaggatgactagcgactactgcncatcagcccctggactacctggagatgcagccgga 799
Query: 307 tctgtcagcacttgtgcgtggagcgcatac-cttccgctgcccgaacctagggctcacca 365
||||||||| | || |||||||| || || ||||| ||||| ||||| | |||||||
Sbjct: 800 cctgtcagcattggtccgtggagcacacacttttccgttgccccaaccttcgnctcacca 859
Query: 366 gctggg 371
||||||
Sbjct: 860 gctggg 865
>gb|CA016620.1|CA016620 HV08A21u HV Hordeum vulgare subsp. vulgare cDNA clone HV08A21
3-PRIME, mRNA sequence
Length = 512
Score = 178 bits (90), Expect = 2e-043
Identities = 258/314 (82%)
Strand = Plus / Minus
Query: 230 gtcatccagggagcactggataggatggacaacgactactgccgctcagcgttagactac 289
|||||||||||||| || || |||||| | ||||||||||| ||||| | ||||||
Sbjct: 512 gtcatccagggagcgctagacaggatgactagcgactactgccaatcagccctggactac 453
Query: 290 ctggagcttcaaccggatctgtcagcacttgtgcgtggagcgcataccttccgctgcccg 349
|||||| | || ||||| ||||||||| | || |||||||| || || ||||| |||||
Sbjct: 452 ctggagatgcagccggacctgtcagcattggtccgtggagcacacactttccggtgcccc 393
Query: 350 aacctagggctcaccagctgggtgcgccttcctatccatgatgctgacttcggatggggc 409
||||| || |||||||||||||||||||| || ||||| || || || || || |||||
Sbjct: 392 aacctcggcctcaccagctgggtgcgcctgccgatccacgacgccgattttggctggggg 333
Query: 410 cggcctgtgttcatggggccaggtggcattgcgtatgaaggtctggcgtttgtcctccca 469
|||| ||||||||||| || || ||||| ||||| || || |||||||| ||||||||
Sbjct: 332 aggccggtgttcatgggtcctggcggcatcgcgtacgaggggctggcgttcgtcctcccg 273
Query: 470 agtgcaaatggcgacggcagcctgtccattgctatctcgttgcaggctgagcacatggag 529
|| || | ||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 272 agcgcgagcaaggacggcagcctgtccatcgccatctcgttgcaggcggagcacatggag 213
Query: 530 aagttccggaagct 543
||||||||||||||
Sbjct: 212 aagttccggaagct 199
>gb|AL500666.1|AL500666 AL500666 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01H10u 3', mRNA sequence
Length = 533
Score = 161 bits (81), Expect = 5e-038
Identities = 213/257 (82%)
Strand = Plus / Minus
Query: 287 tacctggagcttcaaccggatctgtcagcacttgtgcgtggagcgcataccttccgctgc 346
||||||||| | || ||||| ||||||||| | || |||||||| || || ||||| |||
Sbjct: 476 tacctggagatgcagccggacctgtcagcattggtccgtggagcacacactttccggtgc 417
Query: 347 ccgaacctagggctcaccagctgggtgcgccttcctatccatgatgctgacttcggatgg 406
|| ||||| || |||||||||||||||||||| || ||||| || || || || || |||
Sbjct: 416 cccaacctcggcctcaccagctgggtgcgcctgccgatccacgacgccgattttggctgg 357
Query: 407 ggccggcctgtgttcatggggccaggtggcattgcgtatgaaggtctggcgtttgtcctc 466
|| |||| ||||||||||| || || ||||| ||||| || || |||||||| ||||||
Sbjct: 356 gggaggccggtgttcatgggtcctggcggcatcgcgtacgaggggctggcgttcgtcctc 297
Query: 467 ccaagtgcaaatggcgacggcagcctgtccattgctatctcgttgcaggctgagcacatg 526
|| || || | ||||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 296 ccgagcgcgagcaaggacggcagcctgtccatcgccatctcgttgcaggcggagcacatg 237
Query: 527 gagaagttccggaagct 543
|||||||||||||||||
Sbjct: 236 gagaagttccggaagct 220
>gb|BM444360.1|BM444360 EBem09_SQ004_O20_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_O20 5', mRNA sequence
Length = 555
Score = 153 bits (77), Expect = 1e-035
Identities = 236/289 (81%)
Strand = Plus / Plus
Query: 253 gatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtc 312
|||||||||||| ||||||||||| ||| | |||||||||||| | || || || |||||
Sbjct: 48 gatggacaacgagtactgccgctcggcgctggactacctggagatgcagcctgacctgtc 107
Query: 313 agcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggt 372
|| || || || || ||||| || ||||| ||||| ||||| |||||||||||||||||
Sbjct: 108 ggcgctggtccgcggcgcgcacacgttccggtgccccaacctcgggctcaccagctgggt 167
Query: 373 gcgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccagg 432
|||||| || || || || || ||||| || ||||||||||| ||||||||||| || ||
Sbjct: 168 gcgcctgcccattcacgacgccgactttggctggggccggcccgtgttcatgggccccgg 227
Query: 433 tggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcct 492
||||| ||||| || || || || || || ||||| || || | |||||||||||||
Sbjct: 228 cggcatcgcgtacgaggggctcgccttcgtgctccccagcgccagccgcgacggcagcct 287
Query: 493 gtccattgctatctcgttgcaggctgagcacatggagaagttccggaag 541
||| | || |||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 288 gtcggtggccatctcgctgcaggccgagcatatggagaagttccggaag 336
>gb|BU994209.1|BU994209 HM06C21r HM Hordeum vulgare subsp. vulgare cDNA clone HM06C21
5-PRIME, mRNA sequence
Length = 603
Score = 153 bits (77), Expect = 1e-035
Identities = 236/289 (81%)
Strand = Plus / Plus
Query: 253 gatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtc 312
|||||||||||| ||||||||||| ||| | |||||||||||| | || || || |||||
Sbjct: 87 gatggacaacgagtactgccgctcggcgctggactacctggagatgcagcctgacctgtc 146
Query: 313 agcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggt 372
|| || || || || ||||| || ||||| ||||| ||||| |||||||||||||||||
Sbjct: 147 ggcgctggtccgcggcgcgcacacgttccggtgccccaacctcgggctcaccagctgggt 206
Query: 373 gcgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccagg 432
|||||| || || || || || ||||| || ||||||||||| ||||||||||| || ||
Sbjct: 207 gcgcctgcccattcacgacgccgactttggctggggccggcccgtgttcatgggccccgg 266
Query: 433 tggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcct 492
||||| ||||| || || || || || || ||||| || || | |||||||||||||
Sbjct: 267 cggcatcgcgtacgaggggctcgccttcgtgctccccagcgccagccgcgacggcagcct 326
Query: 493 gtccattgctatctcgttgcaggctgagcacatggagaagttccggaag 541
||| | || |||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 327 gtcggtggccatctcgctgcaggccgagcatatggagaagttccggaag 375
>gb|CB859645.1|CB859645 HI11B21w HI Hordeum vulgare subsp. vulgare cDNA clone HI11B21
3-PRIME, mRNA sequence
Length = 562
Score = 153 bits (77), Expect = 1e-035
Identities = 236/289 (81%)
Strand = Plus / Minus
Query: 253 gatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtc 312
|||||||||||| ||||||||||| ||| | |||||||||||| | || || || |||||
Sbjct: 539 gatggacaacgagtactgccgctcggcgctggactacctggagatgcagcctgacctgtc 480
Query: 313 agcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggt 372
|| || || || || ||||| || ||||| ||||| ||||| |||||||||||||||||
Sbjct: 479 ggcgctggtccgcggcgcgcacacgttccggtgccccaacctcgggctcaccagctgggt 420
Query: 373 gcgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccagg 432
|||||| || || || || || ||||| || ||||||||||| ||||||||||| || ||
Sbjct: 419 gcgcctgcccattcacgacgccgactttggctggggccggcccgtgttcatgggccccgg 360
Query: 433 tggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcct 492
||||| ||||| || || || || || || ||||| || || | |||||||||||||
Sbjct: 359 cggcatcgcgtacgaggggctcgccttcgtgctccccagcgccagccgcgacggcagcct 300
Query: 493 gtccattgctatctcgttgcaggctgagcacatggagaagttccggaag 541
||| | || |||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 299 gtcggtggccatctcgctgcaggccgagcatatggagaagttccggaag 251
>gb|CB880111.1|CB880111 HM05I10w HM Hordeum vulgare subsp. vulgare cDNA clone HM05I10
3-PRIME, mRNA sequence
Length = 573
Score = 153 bits (77), Expect = 1e-035
Identities = 236/289 (81%)
Strand = Plus / Minus
Query: 253 gatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtc 312
|||||||||||| ||||||||||| ||| | |||||||||||| | || || || |||||
Sbjct: 557 gatggacaacgagtactgccgctcggcgctggactacctggagatgcagcctgacctgtc 498
Query: 313 agcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggt 372
|| || || || || ||||| || ||||| ||||| ||||| |||||||||||||||||
Sbjct: 497 ggcgctggtccgcggcgcgcacacgttccggtgccccaacctcgggctcaccagctgggt 438
Query: 373 gcgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccagg 432
|||||| || || || || || ||||| || ||||||||||| ||||||||||| || ||
Sbjct: 437 gcgcctgcccattcacgacgccgactttggctggggccggcccgtgttcatgggccccgg 378
Query: 433 tggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcct 492
||||| ||||| || || || || || || ||||| || || | |||||||||||||
Sbjct: 377 cggcatcgcgtacgaggggctcgccttcgtgctccccagcgccagccgcgacggcagcct 318
Query: 493 gtccattgctatctcgttgcaggctgagcacatggagaagttccggaag 541
||| | || |||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 317 gtcggtggccatctcgctgcaggccgagcatatggagaagttccggaag 269
>gb|CB880317.1|CB880317 HM06C21w HM Hordeum vulgare subsp. vulgare cDNA clone HM06C21
3-PRIME, mRNA sequence
Length = 560
Score = 153 bits (77), Expect = 1e-035
Identities = 236/289 (81%)
Strand = Plus / Minus
Query: 253 gatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtc 312
|||||||||||| ||||||||||| ||| | |||||||||||| | || || || |||||
Sbjct: 517 gatggacaacgagtactgccgctcggcgctggactacctggagatgcagcctgacctgtc 458
Query: 313 agcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggt 372
|| || || || || ||||| || ||||| ||||| ||||| |||||||||||||||||
Sbjct: 457 ggcgctggtccgcggcgcgcacacgttccggtgccccaacctcgggctcaccagctgggt 398
Query: 373 gcgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccagg 432
|||||| || || || || || ||||| || ||||||||||| ||||||||||| || ||
Sbjct: 397 gcgcctgcccattcacgacgccgactttggctggggccggcccgtgttcatgggccccgg 338
Query: 433 tggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcct 492
||||| ||||| || || || || || || ||||| || || | |||||||||||||
Sbjct: 337 cggcatcgcgtacgaggggctcgccttcgtgctccccagcgccagccgcgacggcagcct 278
Query: 493 gtccattgctatctcgttgcaggctgagcacatggagaagttccggaag 541
||| | || |||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 277 gtcggtggccatctcgctgcaggccgagcatatggagaagttccggaag 229
>gb|CB881379.1|CB881379 HM09K05w HM Hordeum vulgare subsp. vulgare cDNA clone HM09K05
3-PRIME, mRNA sequence
Length = 549
Score = 153 bits (77), Expect = 1e-035
Identities = 236/289 (81%)
Strand = Plus / Minus
Query: 253 gatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtc 312
|||||||||||| ||||||||||| ||| | |||||||||||| | || || || |||||
Sbjct: 535 gatggacaacgagtactgccgctcggcgctggactacctggagatgcagcctgacctgtc 476
Query: 313 agcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggt 372
|| || || || || ||||| || ||||| ||||| ||||| |||||||||||||||||
Sbjct: 475 ggcgctggtccgcggcgcgcacacgttccggtgccccaacctcgggctcaccagctgggt 416
Query: 373 gcgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccagg 432
|||||| || || || || || ||||| || ||||||||||| ||||||||||| || ||
Sbjct: 415 gcgcctgcccattcacgacgccgactttggctggggccggcccgtgttcatgggccccgg 356
Query: 433 tggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcct 492
||||| ||||| || || || || || || ||||| || || | |||||||||||||
Sbjct: 355 cggcatcgcgtacgaggggctcgccttcgtgctccccagcgccagccgcgacggcagcct 296
Query: 493 gtccattgctatctcgttgcaggctgagcacatggagaagttccggaag 541
||| | || |||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 295 gtcggtggccatctcgctgcaggccgagcatatggagaagttccggaag 247
>gb|CB881920.1|CB881920 HM11E21w HM Hordeum vulgare subsp. vulgare cDNA clone HM11E21
3-PRIME, mRNA sequence
Length = 528
Score = 153 bits (77), Expect = 1e-035
Identities = 236/289 (81%)
Strand = Plus / Minus
Query: 253 gatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtc 312
|||||||||||| ||||||||||| ||| | |||||||||||| | || || || |||||
Sbjct: 502 gatggacaacgagtactgccgctcggcgctggactacctggagatgcagcctgacctgtc 443
Query: 313 agcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggt 372
|| || || || || ||||| || ||||| ||||| ||||| |||||||||||||||||
Sbjct: 442 ggcgctggtccgcggcgcgcacacgttccggtgccccaacctcgggctcaccagctgggt 383
Query: 373 gcgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccagg 432
|||||| || || || || || ||||| || ||||||||||| ||||||||||| || ||
Sbjct: 382 gcgcctgcccattcacgacgccgactttggctggggccggcccgtgttcatgggccccgg 323
Query: 433 tggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcct 492
||||| ||||| || || || || || || ||||| || || | |||||||||||||
Sbjct: 322 cggcatcgcgtacgaggggctcgccttcgtgctccccagcgccagccgcgacggcagcct 263
Query: 493 gtccattgctatctcgttgcaggctgagcacatggagaagttccggaag 541
||| | || |||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 262 gtcggtggccatctcgctgcaggccgagcatatggagaagttccggaag 214
>gb|BU977225.1|BU977225 HA11A22r HA Hordeum vulgare subsp. vulgare cDNA clone HA11A22
5-PRIME, mRNA sequence
Length = 218
Score = 145 bits (73), Expect = 3e-033
Identities = 157/185 (84%)
Strand = Plus / Plus
Query: 8 cggttcagcacatatgcagtgctagcggcacatgtctggaaatgtgtctcccttgcacgc 67
||||||||||| |||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct: 30 cggttcagcacgtatgcagtgctagctgcacatgtctggcgctgtgtctcccttgcgcgc 89
Query: 68 agcctacctcctgaacaacccaccaagttgtattgcgccactgatggccgtcaaacgcta 127
| ||| |||| ||||| ||||||||| ||||||||||||| ||||| || ||| |||
Sbjct: 90 aacctggctccggaacagcccaccaagctgtattgcgccaccgatgggcgacaacggctg 149
Query: 128 cagcctccactaccagatgggtactttggcaatgtcatcttcaccgcgacaccacttgct 187
||||| || || ||||| || |||||||| ||||||||||||||||| || || || |||
Sbjct: 150 cagcccccgctgccagaaggttactttgggaatgtcatcttcaccgccaccccgctcgct 209
Query: 188 gaggc 192
|||||
Sbjct: 210 gaggc 214
>gb|CB882717.1|CB882717 HL02K11w HL Hordeum vulgare subsp. vulgare cDNA clone HL02K11
3-PRIME, mRNA sequence
Length = 629
Score = 145 bits (73), Expect = 3e-033
Identities = 235/289 (81%)
Strand = Plus / Plus
Query: 253 gatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtc 312
|||||||||||| ||||||||||| ||| | |||| ||||||| | || || || |||||
Sbjct: 325 gatggacaacgagtactgccgctcggcgctggactccctggagatgcagcctgacctgtc 384
Query: 313 agcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggt 372
|| || || || || ||||| || ||||| ||||| ||||| |||||||||||||||||
Sbjct: 385 ggcgctggtccgcggcgcgcacacgttccggtgccccaacctcgggctcaccagctgggt 444
Query: 373 gcgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccagg 432
|||||| || || || || || ||||| || ||||||||||| ||||||||||| || ||
Sbjct: 445 gcgcctgcccattcacgacgccgactttggctggggccggcccgtgttcatgggccccgg 504
Query: 433 tggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcct 492
||||| ||||| || || || || || || ||||| || || | |||||||||||||
Sbjct: 505 cggcatcgcgtacgaggggctcgccttcgtgctccccagcgccagccgcgacggcagcct 564
Query: 493 gtccattgctatctcgttgcaggctgagcacatggagaagttccggaag 541
||| | || |||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 565 gtcggtggccatctcgctgcaggccgagcatatggagaagttccggaag 613
Score = 48.1 bits (24), Expect = 5e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 149 tactttggcaatgtcatcttcaccgcgacaccacttgctgaggcgggcaaggtgac 204
||||| ||||| |||||||||||||| || || || || | |||||||||||||||
Sbjct: 221 tacttcggcaacgtcatcttcaccgccacgccgctcgcggtggcgggcaaggtgac 276
>gb|BU977226.1|BU977226 HA11A22u HA Hordeum vulgare subsp. vulgare cDNA clone HA11A22
3-PRIME, mRNA sequence
Length = 395
Score = 131 bits (66), Expect = 4e-029
Identities = 162/194 (83%)
Strand = Plus / Minus
Query: 350 aacctagggctcaccagctgggtgcgccttcctatccatgatgctgacttcggatggggc 409
||||| || |||||||||||||||||||| || ||||| || || || || || |||||
Sbjct: 392 aacctcggcctcaccagctgggtgcgcctgccgatccacgacgccgattttggctggggg 333
Query: 410 cggcctgtgttcatggggccaggtggcattgcgtatgaaggtctggcgtttgtcctccca 469
|||| ||||||||||| || || ||||| ||||| || || |||||||| ||||||||
Sbjct: 332 aggccggtgttcatgggtcctggcggcatcgcgtacgaggggctggcgttcgtcctcccg 273
Query: 470 agtgcaaatggcgacggcagcctgtccattgctatctcgttgcaggctgagcacatggag 529
|| || | ||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 272 agcgcgagcaaggacggcagcctgtccatcgccatctcgttgcaggcggagcacatggag 213
Query: 530 aagttccggaagct 543
||||||||||||||
Sbjct: 212 aagttccggaagct 199
>gb|BM097912.2|BM097912 EBpi03_SQ002_A12_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_A12 5', mRNA sequence
Length = 509
Score = 121 bits (61), Expect = 4e-026
Identities = 175/213 (82%)
Strand = Plus / Plus
Query: 329 gcgcataccttccgctgcccgaacctagggctcaccagctgggtgcgccttcctatccat 388
||||| || ||||| ||||| ||||| ||||||||||||||||||||||| || || ||
Sbjct: 2 gcgcacacgttccggtgccccaacctcgggctcaccagctgggtgcgcctgcccattcac 61
Query: 389 gatgctgacttcggatggggccggcctgtgttcatggggccaggtggcattgcgtatgaa 448
|| || ||||| || ||||||||||| ||||||||||| || || ||||| ||||| ||
Sbjct: 62 gacgccgactttggctggggccggcccgtgttcatgggccccggcggcatcgcgtacgag 121
Query: 449 ggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctgtccattgctatctcg 508
|| || || || || ||||| || || | |||||||||||||||| | || ||||||
Sbjct: 122 gggctcgccttcgtgctccccagcgccagccgcgacggcagcctgtcggtggccatctcg 181
Query: 509 ttgcaggctgagcacatggagaagttccggaag 541
||||||| ||||| ||||||||||||||||||
Sbjct: 182 ctgcaggccgagcatatggagaagttccggaag 214
>gb|CD663895.1|CD663895 UCRHV18_07aa08_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_07aa08, mRNA sequence
Length = 287
Score = 113 bits (57), Expect = 1e-023
Identities = 156/189 (82%)
Strand = Plus / Minus
Query: 350 aacctagggctcaccagctgggtgcgccttcctatccatgatgctgacttcggatggggc 409
||||| || |||||||||||||||||||| || ||||| || || || || || |||||
Sbjct: 278 aacctcggcctcaccagctgggtgcgcctgccgatccacgacgccgattttggctggggg 219
Query: 410 cggcctgtgttcatggggccaggtggcattgcgtatgaaggtctggcgtttgtcctccca 469
|||| ||||||||||| || || ||||| ||||| || || |||||||| ||||||||
Sbjct: 218 aggccggtgttcatgggtcctggcggcatcgcgtacgaggggctggcgttcgtcctcccg 159
Query: 470 agtgcaaatggcgacggcagcctgtccattgctatctcgttgcaggctgagcacatggag 529
|| | | ||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 158 agcgggagcaaggacggcagcctgtccatcgccatctcgttgcaggcggagcacatggag 99
Query: 530 aagttccgg 538
|||||||||
Sbjct: 98 aagttccgg 90
>gb|AL503281.1|AL503281 AL503281 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01H10T 5', mRNA sequence
Length = 700
Score = 61.9 bits (31), Expect = 3e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 8 cggttcagcacatatgcagtgctagcggcacatgtctgg 46
||||||||||| |||||||||||||| ||||||||||||
Sbjct: 659 cggttcagcacgtatgcagtgctagctgcacatgtctgg 697
>gb|BG417675.1|BG417675 HVSMEk0019B08f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0019B08f, mRNA sequence
Length = 444
Score = 54.0 bits (27), Expect = 8e-006
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 253 gatggacaacgactactgccgctcagcgttagactacctggag 295
|||||||||||| ||||||||||| ||| | ||||||||||||
Sbjct: 367 gatggacaacgagtactgccgctcggcgctggactacctggag 409
Score = 48.1 bits (24), Expect = 5e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 149 tactttggcaatgtcatcttcaccgcgacaccacttgctgaggcgggcaaggtgac 204
||||| ||||| |||||||||||||| || || || || | |||||||||||||||
Sbjct: 263 tacttcggcaacgtcatcttcaccgccacgccgctcgcggtggcgggcaaggtgac 318
>gb|BU995236.1|BU995236 HM09K05r HM Hordeum vulgare subsp. vulgare cDNA clone HM09K05
5-PRIME, mRNA sequence
Length = 374
Score = 40.1 bits (20), Expect = 0.12
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 149 tactttggcaatgtcatcttcaccgcgacaccacttgctgaggcgggcaagg 200
||||| ||||| |||||||||||||| || || || || | |||||||||||
Sbjct: 294 tacttcggcaacgtcatcttcaccgccacgccgctcgcggtggcgggcaagg 345
>gb|BF618963.3|BF618963 HVSMEc0008N18f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0008N18f, mRNA sequence
Length = 802
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 194 ggcaaggtgaccagtgagc 212
|||||||||||||||||||
Sbjct: 555 ggcaaggtgaccagtgagc 573
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,517
Number of Sequences: 312970
Number of extensions: 71517
Number of successful extensions: 20970
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20925
Number of HSP's gapped (non-prelim): 42
length of query: 886
length of database: 175,134,539
effective HSP length: 19
effective length of query: 867
effective length of database: 169,188,109
effective search space: 146686090503
effective search space used: 146686090503
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)