BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2618988.2.1
(631 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG300446.1|BG300446 HVSMEb0017B13f Hordeum vulgare seedl... 272 1e-071
gb|BQ763397.1|BQ763397 EBro02_SQ008_B12_R root, 3 week, hyd... 232 1e-059
gb|BF256192.2|BF256192 HVSMEf0009B02f Hordeum vulgare seedl... 180 4e-044
gb|CA001112.1|CA001112 HS05G15u HS Hordeum vulgare subsp. v... 98 4e-019
gb|CA015634.1|CA015634 HT14O18r HT Hordeum vulgare subsp. v... 98 4e-019
emb|AJ496572.1|HVU496572 Hordeum vulgare partial mRNA for p... 98 4e-019
gb|AV927070.1|AV927070 AV927070 K. Sato unpublished cDNA li... 90 1e-016
gb|AV931900.1|AV931900 AV931900 K. Sato unpublished cDNA li... 90 1e-016
gb|BG417865.2|BG417865 HVSMEk0019M17f Hordeum vulgare testa... 76 2e-012
gb|BI777919.2|BI777919 EBro07_SQ001_E12_R root, 3 week, red... 76 2e-012
gb|CA023704.1|CA023704 HZ47C08r HZ Hordeum vulgare subsp. v... 72 2e-011
gb|AJ462599.1|AJ462599 AJ462599 S00002 Hordeum vulgare subs... 70 1e-010
gb|BU998386.1|BU998386 HI10O06r HI Hordeum vulgare subsp. v... 70 1e-010
gb|BI957863.1|BI957863 HVSMEn0011M19f Hordeum vulgare rachi... 64 6e-009
gb|BG417500.2|BG417500 HVSMEk0017N08f Hordeum vulgare testa... 64 6e-009
gb|BM444331.1|BM444331 EBem09_SQ004_N12_R embryo, 1 Day ger... 64 6e-009
gb|AV929458.1|AV929458 AV929458 K. Sato unpublished cDNA li... 62 2e-008
gb|CA001229.1|CA001229 HS18N07u HS Hordeum vulgare subsp. v... 62 2e-008
gb|BF253477.2|BF253477 HVSMEf0001A18f Hordeum vulgare seedl... 58 4e-007
gb|BJ458132.1|BJ458132 BJ458132 K. Sato unpublished cDNA li... 58 4e-007
gb|CA028126.1|CA028126 HZ61B05r HZ Hordeum vulgare subsp. v... 58 4e-007
gb|CB879235.1|CB879235 HP11G23T HP Hordeum vulgare subsp. v... 58 4e-007
gb|BJ450621.1|BJ450621 BJ450621 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ458043.1|BJ458043 BJ458043 K. Sato unpublished cDNA li... 56 1e-006
gb|BQ660136.1|BQ660136 HI01C06w HI Hordeum vulgare subsp. v... 56 1e-006
gb|BF262509.1|BF262509 HV_CEa0004C17f Hordeum vulgare seedl... 54 6e-006
gb|CB882618.1|CB882618 HL02G02w HL Hordeum vulgare subsp. v... 52 2e-005
gb|BF260942.2|BF260942 HVSMEf0023F14f Hordeum vulgare seedl... 50 9e-005
gb|BF267582.3|BF267582 HV_CEa0018F10f Hordeum vulgare seedl... 50 9e-005
gb|CB881181.1|CB881181 HM09A05w HM Hordeum vulgare subsp. v... 50 9e-005
gb|CB881910.1|CB881910 HM11E09w HM Hordeum vulgare subsp. v... 50 9e-005
gb|CA000677.1|CA000677 HS07F12u HS Hordeum vulgare subsp. v... 48 4e-004
gb|BI956785.1|BI956785 HVSMEn0005E22f Hordeum vulgare rachi... 46 0.001
gb|BM816841.1|BM816841 HB105A11_SK.ab1 HB Hordeum vulgare s... 46 0.001
gb|CA001379.1|CA001379 HS18D16u HS Hordeum vulgare subsp. v... 46 0.001
gb|CA009114.1|CA009114 HU13D11r HU Hordeum vulgare subsp. v... 46 0.001
gb|CA010560.1|CA010560 HT09K12u HT Hordeum vulgare subsp. v... 46 0.001
gb|CA016572.1|CA016572 HV06P19u HV Hordeum vulgare subsp. v... 46 0.001
gb|CA016687.1|CA016687 HV06O20u HV Hordeum vulgare subsp. v... 46 0.001
gb|CA016852.1|CA016852 HV06B13u HV Hordeum vulgare subsp. v... 46 0.001
gb|CB859573.1|CB859573 HI10O06w HI Hordeum vulgare subsp. v... 46 0.001
gb|BE411730.1|BE411730 ISC008.F09F990729 ITEC ISC Barley Le... 44 0.005
gb|AL450622.1|AL450622 AL450622 Hordeum vulgare Barke etiol... 44 0.005
gb|BF260368.2|BF260368 HVSMEf0021M24f Hordeum vulgare seedl... 42 0.022
gb|BU994136.1|BU994136 HM05N21r HM Hordeum vulgare subsp. v... 42 0.022
gb|CB880799.1|CB880799 HM07N21w HM Hordeum vulgare subsp. v... 42 0.022
gb|BF255286.3|BF255286 HVSMEf0006H07f Hordeum vulgare seedl... 40 0.085
gb|BQ464840.1|BQ464840 HU01M16T HU Hordeum vulgare subsp. v... 40 0.085
gb|BQ663266.1|BQ663266 HU01M16w HU Hordeum vulgare subsp. v... 40 0.085
gb|BQ768447.1|BQ768447 EBro08_SQ011_B19_R root, 3 week, dro... 40 0.085
gb|CA015437.1|CA015437 HT14F01r HT Hordeum vulgare subsp. v... 40 0.085
gb|CA028926.1|CA028926 HZ63K12r HZ Hordeum vulgare subsp. v... 40 0.085
gb|CB881344.1|CB881344 HM09I09w HM Hordeum vulgare subsp. v... 40 0.085
gb|CV058275.1|CV058275 BNEL36c3 Barley EST endosperm librar... 40 0.085
gb|CV059888.1|CV059888 BNEL52a6 Barley EST endosperm librar... 40 0.085
gb|CV063917.1|CV063917 BNEL94f3 Barley EST endosperm librar... 40 0.085
gb|BM372091.2|BM372091 EBma08_SQ004_P07_R maternal, 28 DPA,... 38 0.34
gb|BI778972.2|BI778972 EBro01_SQ002_F20_R root, 3 week, hyd... 38 0.34
gb|CA017202.1|CA017202 HV14H10u HV Hordeum vulgare subsp. v... 38 0.34
>gb|BG300446.1|BG300446 HVSMEb0017B13f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017B13f, mRNA sequence
Length = 875
Score = 272 bits (137), Expect = 1e-071
Identities = 233/265 (87%)
Strand = Plus / Minus
Query: 367 tccacggccacggccagctgcatctccttctccaggaacacccggttgagccgctgctcc 426
||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 436 tccacggccgcggccagccccagctccttctccaggaacacccggttgagccgctgctcc 377
Query: 427 gcgtagagcggccacgccaccatcggcacgcccgccatcaccgcctccaggaccgagttc 486
||||| ||||||||||||| |||||||||||| ||||||||||||||||| |||||||||
Sbjct: 376 gcgtacagcggccacgccagcatcggcacgccggccatcaccgcctccagcaccgagttc 317
Query: 487 cagccgcagtgcgtcacgaagccgcccacggacgcgtgcgccagcacgtcccgctgcggc 546
|| ||||||||||||||||| |||||||| | |||||||||||||||| |||||||||
Sbjct: 316 cacccgcagtgcgtcacgaacccgcccaccgcgccgtgcgccagcacgtcgcgctgcggc 257
Query: 547 gcccacgacctgaccacgagacccctatccttggtccgggccaggaacccctccgggagg 606
||||||| | | ||||| || || || || | ||||||||| ||||| ||| ||||||
Sbjct: 256 gcccacgtcttcaccaccagccctctctcttgggtccgggcgaggaagcccggagggagg 197
Query: 607 agcgcgtcaaggtccggctccggcg 631
|| ||||| ||||| ||||||||||
Sbjct: 196 agggcgtccaggtcgggctccggcg 172
>gb|BQ763397.1|BQ763397 EBro02_SQ008_B12_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_B12 5', mRNA sequence
Length = 552
Score = 232 bits (117), Expect = 1e-059
Identities = 237/277 (85%)
Strand = Plus / Minus
Query: 355 ctgtcgtacccttccacggccacggccagctgcatctccttctccaggaacacccggttg 414
||||| |||||||||| ||| |||||||||| |||||| |||||||| |||||| |||
Sbjct: 343 ctgtcatacccttccatggcaacggccagctccatctctttctccagaaacaccgcgttc 284
Query: 415 agccgctgctccgcgtagagcggccacgccaccatcggcacgcccgccatcaccgcctcc 474
| ||||||||||||||| | ||||||||||| ||| |||||||||||||| |||| |||
Sbjct: 283 atccgctgctccgcgtacaacggccacgccagcatgggcacgcccgccatgaccgactcg 224
Query: 475 aggaccgagttccagccgcagtgcgtcacgaagccgcccacggacgcgtgcgccagcacg 534
|| ||||||||||| ||||||||||||||||| | |||||| | ||||||||||||||
Sbjct: 223 agcaccgagttccatccgcagtgcgtcacgaaacagcccaccgcgtcgtgcgccagcacg 164
Query: 535 tcccgctgcggcgcccacgacctgaccacgagacccctatccttggtccgggccaggaac 594
|| |||||||||||||||||| | || ||||| ||||| ||||||||||| |||||||
Sbjct: 163 tcgcgctgcggcgcccacgacttcacgacgaggcccctgcccttggtccggtccaggaaa 104
Query: 595 ccctccgggaggagcgcgtcaaggtccggctccggcg 631
| |||||||||||| | || | ||||||||||||||
Sbjct: 103 cactccgggaggaggtcatccaagtccggctccggcg 67
>gb|BF256192.2|BF256192 HVSMEf0009B02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0009B02f, mRNA sequence
Length = 782
Score = 180 bits (91), Expect = 4e-044
Identities = 148/167 (88%)
Strand = Plus / Minus
Query: 417 ccgctgctccgcgtagagcggccacgccaccatcggcacgcccgccatcaccgcctccag 476
||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 175 ccgctgctccgcgtacagcggccaccccagcatcggcacgcccgccatgaccgcctccag 116
Query: 477 gaccgagttccagccgcagtgcgtcacgaagccgcccacggacgcgtgcgccagcacgtc 536
||||||||||| |||||||| |||||||| |||||||| || |||| || ||||| ||
Sbjct: 115 caccgagttccacccgcagtgggtcacgaacccgcccaccgatccgtgggcgagcacctc 56
Query: 537 ccgctgcggcgcccacgacctgaccacgagacccctatccttggtcc 583
||||||||||||||||||| ||||||| || || || ||||||||||
Sbjct: 55 ccgctgcggcgcccacgacatgaccaccagccctctgtccttggtcc 9
>gb|CA001112.1|CA001112 HS05G15u HS Hordeum vulgare subsp. vulgare cDNA clone HS05G15
3-PRIME, mRNA sequence
Length = 560
Score = 97.6 bits (49), Expect = 4e-019
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 424 tccgcgtagagcggccacgccaccatcggcacgcccgccatcaccgcctccaggaccgag 483
|||||||| ||||||||| |||||||||||||| || |||| |||||||| ||||||
Sbjct: 428 tccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgag 487
Query: 484 ttccagccgcagtgcgtcacgaagccgcc 512
||||||||||||||||||||||| |||||
Sbjct: 488 ttccagccgcagtgcgtcacgaacccgcc 516
>gb|CA015634.1|CA015634 HT14O18r HT Hordeum vulgare subsp. vulgare cDNA clone HT14O18
5-PRIME, mRNA sequence
Length = 622
Score = 97.6 bits (49), Expect = 4e-019
Identities = 79/89 (88%)
Strand = Plus / Minus
Query: 424 tccgcgtagagcggccacgccaccatcggcacgcccgccatcaccgcctccaggaccgag 483
|||||||| ||||||||| |||||||||||||| || |||| |||||||| ||||||
Sbjct: 423 tccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgag 364
Query: 484 ttccagccgcagtgcgtcacgaagccgcc 512
||||||||||||||||||||||| |||||
Sbjct: 363 ttccagccgcagtgcgtcacgaacccgcc 335
>emb|AJ496572.1|HVU496572 Hordeum vulgare partial mRNA for putative glycosyltransferase (sf2
gene)
Length = 863
Score = 97.6 bits (49), Expect = 4e-019
Identities = 79/89 (88%)
Strand = Plus / Minus
Query: 424 tccgcgtagagcggccacgccaccatcggcacgcccgccatcaccgcctccaggaccgag 483
|||||||| ||||||||| |||||||||||||| || |||| |||||||| ||||||
Sbjct: 689 tccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgag 630
Query: 484 ttccagccgcagtgcgtcacgaagccgcc 512
||||||||||||||||||||||| |||||
Sbjct: 629 ttccagccgcagtgcgtcacgaacccgcc 601
>gb|AV927070.1|AV927070 AV927070 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26k01 5', mRNA sequence
Length = 676
Score = 89.7 bits (45), Expect = 1e-016
Identities = 87/101 (86%)
Strand = Plus / Minus
Query: 529 agcacgtcccgctgcggcgcccacgacctgaccacgagacccctatccttggtccgggcc 588
||||||||| |||||||||||||||| |||| ||||| ||||| |||||||||| ||
Sbjct: 172 agcacgtccacctgcggcgcccacgacttgacgacgaggcccctgcccttggtccgatcc 113
Query: 589 aggaacccctccgggaggagcgcgtcaaggtccggctccgg 629
|||||||| | || || |||||||||||||||||||||||
Sbjct: 112 aggaacccttgaggcagcagcgcgtcaaggtccggctccgg 72
Score = 60.0 bits (30), Expect = 9e-008
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 469 gcctccaggaccgagttccagccgcagtgcgtcacgaa 506
|||||||| ||||||||||| |||||||||||||||||
Sbjct: 232 gcctccagcaccgagttccatccgcagtgcgtcacgaa 195
>gb|AV931900.1|AV931900 AV931900 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26k01 3', mRNA sequence
Length = 631
Score = 89.7 bits (45), Expect = 1e-016
Identities = 87/101 (86%)
Strand = Plus / Plus
Query: 529 agcacgtcccgctgcggcgcccacgacctgaccacgagacccctatccttggtccgggcc 588
||||||||| |||||||||||||||| |||| ||||| ||||| |||||||||| ||
Sbjct: 471 agcacgtccacctgcggcgcccacgacttgacgacgaggcccctgcccttggtccgatcc 530
Query: 589 aggaacccctccgggaggagcgcgtcaaggtccggctccgg 629
|||||||| | || || |||||||||||||||||||||||
Sbjct: 531 aggaacccttgaggcagcagcgcgtcaaggtccggctccgg 571
Score = 60.0 bits (30), Expect = 9e-008
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 469 gcctccaggaccgagttccagccgcagtgcgtcacgaa 506
|||||||| ||||||||||| |||||||||||||||||
Sbjct: 411 gcctccagcaccgagttccatccgcagtgcgtcacgaa 448
>gb|BG417865.2|BG417865 HVSMEk0019M17f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0019M17f, mRNA sequence
Length = 495
Score = 75.8 bits (38), Expect = 2e-012
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 421 tgctccgcgtagagcggccacgccaccatcggcacgcccgccatcaccgcctccaggacc 480
|||||||||| |||||||||||||||||||||||||| || ||| |||||| ||
Sbjct: 142 tgctccgcgtgcagcggccacgccaccatcggcacgccggcagacacgctctccagcgcc 83
Query: 481 gagttccagccgcagtgcgtcacgaa 506
||||||||||||||||||| ||||||
Sbjct: 82 gagttccagccgcagtgcgacacgaa 57
>gb|BI777919.2|BI777919 EBro07_SQ001_E12_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ001_E12 5', mRNA sequence
Length = 429
Score = 75.8 bits (38), Expect = 2e-012
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 417 ccgctgctccgcgtagagcggccacgccaccatcggcacgcc 458
||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 58 ccgctgctccgcgtacagcggccacgccaccatcggcacgcc 17
>gb|CA023704.1|CA023704 HZ47C08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47C08
5-PRIME, mRNA sequence
Length = 355
Score = 71.9 bits (36), Expect = 2e-011
Identities = 93/112 (83%)
Strand = Plus / Minus
Query: 419 gctgctccgcgtagagcggccacgccaccatcggcacgcccgccatcaccgcctccagga 478
||||||||||||| |||||||| | ||||||||||||||| | || |||||||
Sbjct: 233 gctgctccgcgtacagcggccatggcaccatcggcacgccgaaccacaggctctccaggg 174
Query: 479 ccgagttccagccgcagtgcgtcacgaagccgcccacggacgcgtgcgccag 530
||||||||| |||| ||||||||||||||| ||||| || |||||||||||
Sbjct: 173 tcgagttccacccgccgtgcgtcacgaagccccccacagaggcgtgcgccag 122
>gb|AJ462599.1|AJ462599 AJ462599 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200036E05F1, mRNA sequence
Length = 360
Score = 69.9 bits (35), Expect = 1e-010
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 540 ctgcggcgcccacgacctgaccacgagacccctatccttggtccgggccaggaacccctc 599
|||||||||||| ||| |||||||||| || || |||||||||| ||| |||||| ||
Sbjct: 117 ctgcggcgcccaagacttgaccacgagccctctgtccttggtcctctccaagaacccttc 58
Query: 600 cgggaggagcgcgtcaaggtccggctccggc 630
||| | ||||||||| ||||| |||||||||
Sbjct: 57 cggcatgagcgcgtcgaggtcaggctccggc 27
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 480 cgagttccagccgcagtgcgtca 502
|||||||||||||||||||||||
Sbjct: 177 cgagttccagccgcagtgcgtca 155
>gb|BU998386.1|BU998386 HI10O06r HI Hordeum vulgare subsp. vulgare cDNA clone HI10O06
5-PRIME, mRNA sequence
Length = 635
Score = 69.9 bits (35), Expect = 1e-010
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 540 ctgcggcgcccacgacctgaccacgagacccctatccttggtccgggccaggaacccctc 599
|||||||||||| ||| |||||||||| || || |||||||||| ||| |||||| ||
Sbjct: 518 ctgcggcgcccaagacttgaccacgagccctctgtccttggtcctctccaagaacccttc 459
Query: 600 cgggaggagcgcgtcaaggtccggctccggc 630
||| | ||||||||| ||||| |||||||||
Sbjct: 458 cggcatgagcgcgtcgaggtcaggctccggc 428
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 480 cgagttccagccgcagtgcgtca 502
|||||||||||||||||||||||
Sbjct: 578 cgagttccagccgcagtgcgtca 556
>gb|BI957863.1|BI957863 HVSMEn0011M19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0011M19f, mRNA sequence
Length = 1178
Score = 63.9 bits (32), Expect = 6e-009
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 471 ctccaggaccgagttccagccgcagtgcgtcacgaagccgccca 514
|||||| ||||||||||||||||||||||||| ||| |||||||
Sbjct: 511 ctccagcaccgagttccagccgcagtgcgtcaggaatccgccca 554
>gb|BG417500.2|BG417500 HVSMEk0017N08f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017N08f, mRNA sequence
Length = 824
Score = 63.9 bits (32), Expect = 6e-009
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 471 ctccaggaccgagttccagccgcagtgcgtcacgaagccgccca 514
|||||| ||||||||||||||||||||||||| ||| |||||||
Sbjct: 155 ctccagcaccgagttccagccgcagtgcgtcaggaatccgccca 112
>gb|BM444331.1|BM444331 EBem09_SQ004_N12_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_N12 5', mRNA sequence
Length = 340
Score = 63.9 bits (32), Expect = 6e-009
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 481 gagttccagccgcagtgcgtcacgaagccgcccacggacgcgtg 524
|||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct: 154 gagttccacccgcagtgcgtcacgaagcagcccacggccgcgtg 111
>gb|AV929458.1|AV929458 AV929458 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14e21 3', mRNA sequence
Length = 683
Score = 61.9 bits (31), Expect = 2e-008
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 540 ctgcggcgcccacgacctgaccacgagacccctatccttggtccgggccaggaacccctc 599
|||||||||||| ||| |||||||||| || || ||||||||| ||| |||||| ||
Sbjct: 587 ctgcggcgcccaagacttgaccacgagccctctgcccttggtcctctccaagaacccttc 646
Query: 600 cgggaggagcgcgtcaaggtccggctccggc 630
||| | ||||||||| ||||| |||||||||
Sbjct: 647 cggcatgagcgcgtcgaggtcgggctccggc 677
>gb|CA001229.1|CA001229 HS18N07u HS Hordeum vulgare subsp. vulgare cDNA clone HS18N07
3-PRIME, mRNA sequence
Length = 544
Score = 61.9 bits (31), Expect = 2e-008
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 540 ctgcggcgcccacgacctgaccacgagacccctatccttggtccgggccaggaacccctc 599
|||||||||||| ||| |||||||||| || || ||||||||| ||| |||||| ||
Sbjct: 409 ctgcggcgcccaagacttgaccacgagccctctgcccttggtcctctccaagaacccttc 468
Query: 600 cgggaggagcgcgtcaaggtccggctccggc 630
||| | ||||||||| ||||| |||||||||
Sbjct: 469 cggcatgagcgcgtcgaggtcgggctccggc 499
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 480 cgagttccagccgcagtgcgtca 502
|||||||||||||||||||||||
Sbjct: 349 cgagttccagccgcagtgcgtca 371
>gb|BF253477.2|BF253477 HVSMEf0001A18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001A18f, mRNA sequence
Length = 612
Score = 58.0 bits (29), Expect = 4e-007
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 483 gttccagccgcagtgcgtcacgaagccgcccac 515
|||||||||||||||||||| ||||||||||||
Sbjct: 323 gttccagccgcagtgcgtcaggaagccgcccac 291
>gb|BJ458132.1|BJ458132 BJ458132 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30n03 3', mRNA sequence
Length = 196
Score = 58.0 bits (29), Expect = 4e-007
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 211 tccgactcaccgccctcacgcagcgcgtccttggcctgccgcatggccgccagcgtgcgc 270
|||||||| |||||||| |||||| ||||||||| ||||||||| |||||||||||
Sbjct: 128 tccgactcgccgccctcggccagcgcctccttggccctccgcatggcgtccagcgtgcgc 187
Query: 271 ttccggagc 279
| |||||||
Sbjct: 188 tcccggagc 196
>gb|CA028126.1|CA028126 HZ61B05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61B05
5-PRIME, mRNA sequence
Length = 565
Score = 58.0 bits (29), Expect = 4e-007
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 471 ctccaggaccgagttccagccgcagtgcgtcacgaagccgcccacggacgcgtgcgccag 530
|||||| ||||||||||| ||||||||||| ||||| || |||||||| ||||| |||
Sbjct: 539 ctccagcaccgagttccaaccgcagtgcgtgacgaatccccccacggagcggtgcgacag 480
Query: 531 cacgtcccgctgcggcgccca 551
||| | |||||||||||||
Sbjct: 479 gacggcgagctgcggcgccca 459
>gb|CB879235.1|CB879235 HP11G23T HP Hordeum vulgare subsp. vulgare cDNA clone HP11G23
5-PRIME, mRNA sequence
Length = 622
Score = 58.0 bits (29), Expect = 4e-007
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 483 gttccagccgcagtgcgtcacgaagccgcccac 515
|||||||||||||||||||| ||||||||||||
Sbjct: 71 gttccagccgcagtgcgtcaggaagccgcccac 39
>gb|BJ450621.1|BJ450621 BJ450621 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30g17 5', mRNA sequence
Length = 616
Score = 56.0 bits (28), Expect = 1e-006
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 540 ctgcggcgcccacgacctgaccacgagacccctatccttggtccgggccaggaacccctc 599
|||||||||||| ||| |||||||||| || || ||||||||| ||| |||||| ||
Sbjct: 111 ctgcggcgcccaagacttgaccacgagccctctgcccttggtcctctccaagaacccttc 52
Query: 600 cgggaggagcgcgtcaaggtccggctcc 627
||| | ||||||||| ||||| ||||||
Sbjct: 51 cggcatgagcgcgtcgaggtcgggctcc 24
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 480 cgagttccagccgcagtgcgtca 502
|||||||||||||||||||||||
Sbjct: 171 cgagttccagccgcagtgcgtca 149
>gb|BJ458043.1|BJ458043 BJ458043 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30g17 3', mRNA sequence
Length = 551
Score = 56.0 bits (28), Expect = 1e-006
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 540 ctgcggcgcccacgacctgaccacgagacccctatccttggtccgggccaggaacccctc 599
|||||||||||| ||| |||||||||| || || ||||||||| ||| |||||| ||
Sbjct: 463 ctgcggcgcccaagacttgaccacgagccctctgcccttggtcctctccaagaacccttc 522
Query: 600 cgggaggagcgcgtcaaggtccggctcc 627
||| | ||||||||| ||||| ||||||
Sbjct: 523 cggcatgagcgcgtcgaggtcgggctcc 550
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 480 cgagttccagccgcagtgcgtca 502
|||||||||||||||||||||||
Sbjct: 403 cgagttccagccgcagtgcgtca 425
>gb|BQ660136.1|BQ660136 HI01C06w HI Hordeum vulgare subsp. vulgare cDNA clone HI01C06
3-PRIME, mRNA sequence
Length = 668
Score = 56.0 bits (28), Expect = 1e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 471 ctccaggaccgagttccagccgcagtgcgtcacgaagccgccca 514
|||||| ||||||||||||||||||||||| | ||| |||||||
Sbjct: 532 ctccagcaccgagttccagccgcagtgcgtgaggaatccgccca 575
>gb|BF262509.1|BF262509 HV_CEa0004C17f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0004C17f, mRNA sequence
Length = 873
Score = 54.0 bits (27), Expect = 6e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 471 ctccaggaccgagttccagccgcagtgcgtcacgaagccgcccacgg 517
|||||| || |||||||| ||||||||||||| |||||| |||||||
Sbjct: 91 ctccagcacagagttccacccgcagtgcgtcaggaagccacccacgg 45
>gb|CB882618.1|CB882618 HL02G02w HL Hordeum vulgare subsp. vulgare cDNA clone HL02G02
3-PRIME, mRNA sequence
Length = 619
Score = 52.0 bits (26), Expect = 2e-005
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 480 cgagttccagccgcagtgcgtcacgaagccgcccacggacgcgtgcgccagcac 533
||||||||| ||||||||||||||||||| ||||| | || ||||| ||||||
Sbjct: 594 cgagttccaaccgcagtgcgtcacgaagcaccccaccgccgggtgcgacagcac 541
>gb|BF260942.2|BF260942 HVSMEf0023F14f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023F14f, mRNA sequence
Length = 816
Score = 50.1 bits (25), Expect = 9e-005
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 528 cagcacgtcccgctgcggcgcccac 552
|||||||||||||||||||||||||
Sbjct: 236 cagcacgtcccgctgcggcgcccac 212
>gb|BF267582.3|BF267582 HV_CEa0018F10f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018F10f, mRNA sequence
Length = 602
Score = 50.1 bits (25), Expect = 9e-005
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 481 gagttccagccgcagtgcgtcacgaagccgccc 513
|||||||| ||||||||||||| ||||||||||
Sbjct: 50 gagttccacccgcagtgcgtcaggaagccgccc 18
>gb|CB881181.1|CB881181 HM09A05w HM Hordeum vulgare subsp. vulgare cDNA clone HM09A05
3-PRIME, mRNA sequence
Length = 620
Score = 50.1 bits (25), Expect = 9e-005
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 469 gcctccaggaccgagttccagccgcagtgcgtcacgaagccgcccacggacgcgtgcgcc 528
|||||||| ||||||||||| || ||||| |||| ||| ||||||| |||| ||| |||
Sbjct: 468 gcctccagcaccgagttccacccacagtgtgtcaggaacgcgcccaccgacgggtgagcc 527
Query: 529 agcac 533
|||||
Sbjct: 528 agcac 532
>gb|CB881910.1|CB881910 HM11E09w HM Hordeum vulgare subsp. vulgare cDNA clone HM11E09
3-PRIME, mRNA sequence
Length = 607
Score = 50.1 bits (25), Expect = 9e-005
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 469 gcctccaggaccgagttccagccgcagtgcgtcacgaagccgcccacggacgcgtgcgcc 528
|||||||| ||||||||||| || ||||| |||| ||| ||||||| |||| ||| |||
Sbjct: 518 gcctccagcaccgagttccacccacagtgtgtcaggaacgcgcccaccgacgggtgagcc 577
Query: 529 agcac 533
|||||
Sbjct: 578 agcac 582
>gb|CA000677.1|CA000677 HS07F12u HS Hordeum vulgare subsp. vulgare cDNA clone HS07F12
3-PRIME, mRNA sequence
Length = 556
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 540 ctgcggcgcccacgacctgaccacgagacccctatccttggtcc 583
|||||||||||| ||| |||||||||| || || ||||||||||
Sbjct: 508 ctgcggcgcccaagacttgaccacgagccctctgtccttggtcc 551
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 480 cgagttccagccgcagtgcgtca 502
|||||||||||||||||||||||
Sbjct: 448 cgagttccagccgcagtgcgtca 470
>gb|BI956785.1|BI956785 HVSMEn0005E22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005E22f, mRNA sequence
Length = 846
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 521 cgtgcgccagcacgtcccgctgcggcgcccacgac 555
||||||||||||| ||| ||||||||||||||||
Sbjct: 407 cgtgcgccagcacctccgtctgcggcgcccacgac 373
>gb|BM816841.1|BM816841 HB105A11_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB105A11_SK.ab1 similar to
Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase, mRNA sequence
Length = 872
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 481 gagttccagccgcagtgcgtcacgaagccgcccac 515
|||||||| ||||||||||||| |||| |||||||
Sbjct: 547 gagttccacccgcagtgcgtcaagaaggcgcccac 513
>gb|CA001379.1|CA001379 HS18D16u HS Hordeum vulgare subsp. vulgare cDNA clone HS18D16
3-PRIME, mRNA sequence
Length = 473
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 480 cgagttccagccgcagtgcgtca 502
|||||||||||||||||||||||
Sbjct: 412 cgagttccagccgcagtgcgtca 434
>gb|CA009114.1|CA009114 HU13D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU13D11
5-PRIME, mRNA sequence
Length = 581
Score = 46.1 bits (23), Expect = 0.001
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 490 ccgcagtgcgtcacgaagccgcccacggacgcgtgcgccagcacgtcccgctgcggcgcc 549
||||||||||||| ||| |||||||| | || ||||||||| | | || ||||||||||
Sbjct: 348 ccgcagtgcgtcatgaacccgcccaccgccgggtgcgccaggatggccacctgcggcgcc 289
Query: 550 cac 552
|||
Sbjct: 288 cac 286
>gb|CA010560.1|CA010560 HT09K12u HT Hordeum vulgare subsp. vulgare cDNA clone HT09K12
3-PRIME, mRNA sequence
Length = 361
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 481 gagttccagccgcagtgcgtcacgaagccgcccac 515
|||||||| ||||||||||||| |||| |||||||
Sbjct: 309 gagttccacccgcagtgcgtcaagaaggcgcccac 343
>gb|CA016572.1|CA016572 HV06P19u HV Hordeum vulgare subsp. vulgare cDNA clone HV06P19
3-PRIME, mRNA sequence
Length = 447
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 481 gagttccagccgcagtgcgtcacgaagccgcccac 515
|||||||| ||||||||||||| |||| |||||||
Sbjct: 332 gagttccacccgcagtgcgtcaagaaggcgcccac 366
>gb|CA016687.1|CA016687 HV06O20u HV Hordeum vulgare subsp. vulgare cDNA clone HV06O20
3-PRIME, mRNA sequence
Length = 490
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 481 gagttccagccgcagtgcgtcacgaagccgcccac 515
|||||||| ||||||||||||| |||| |||||||
Sbjct: 332 gagttccacccgcagtgcgtcaagaaggcgcccac 366
>gb|CA016852.1|CA016852 HV06B13u HV Hordeum vulgare subsp. vulgare cDNA clone HV06B13
3-PRIME, mRNA sequence
Length = 365
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 481 gagttccagccgcagtgcgtcacgaagccgcccac 515
|||||||| ||||||||||||| |||| |||||||
Sbjct: 315 gagttccacccgcagtgcgtcaagaaggcgcccac 349
>gb|CB859573.1|CB859573 HI10O06w HI Hordeum vulgare subsp. vulgare cDNA clone HI10O06
3-PRIME, mRNA sequence
Length = 511
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 480 cgagttccagccgcagtgcgtca 502
|||||||||||||||||||||||
Sbjct: 448 cgagttccagccgcagtgcgtca 470
>gb|BE411730.1|BE411730 ISC008.F09F990729 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC008.F09, mRNA sequence
Length = 346
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 480 cgagttccagccgcagtgcgtc 501
||||||||||||||||||||||
Sbjct: 112 cgagttccagccgcagtgcgtc 91
>gb|AL450622.1|AL450622 AL450622 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03H20u 5', mRNA sequence
Length = 475
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 419 gctgctccgcgtagagcggccacgccaccatcgg 452
|||||||||||||||| ||||||| | |||||||
Sbjct: 65 gctgctccgcgtagagtggccacggcgccatcgg 32
>gb|BF260368.2|BF260368 HVSMEf0021M24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021M24f, mRNA sequence
Length = 816
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 480 cgagttccagccgcagtgcgtcacgaagc 508
||||||||| |||||||||||| ||||||
Sbjct: 155 cgagttccaaccgcagtgcgtcccgaagc 127
>gb|BU994136.1|BU994136 HM05N21r HM Hordeum vulgare subsp. vulgare cDNA clone HM05N21
5-PRIME, mRNA sequence
Length = 554
Score = 42.1 bits (21), Expect = 0.022
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 490 ccgcagtgcgtcacgaagccgcccacggacgcgtgcg 526
||||||||||||| |||||| ||||||| || |||||
Sbjct: 144 ccgcagtgcgtcatgaagccccccacggccgggtgcg 108
>gb|CB880799.1|CB880799 HM07N21w HM Hordeum vulgare subsp. vulgare cDNA clone HM07N21
3-PRIME, mRNA sequence
Length = 550
Score = 42.1 bits (21), Expect = 0.022
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 490 ccgcagtgcgtcacgaagccgcccacggacgcgtgcg 526
||||||||||||| |||||| ||||||| || |||||
Sbjct: 411 ccgcagtgcgtcatgaagccccccacggccgggtgcg 447
>gb|BF255286.3|BF255286 HVSMEf0006H07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006H07f, mRNA sequence
Length = 505
Score = 40.1 bits (20), Expect = 0.085
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 481 gagttccagccgcagtgcgtcacgaagc 508
||||||||||||||||| || |||||||
Sbjct: 126 gagttccagccgcagtgggtgacgaagc 99
>gb|BQ464840.1|BQ464840 HU01M16T HU Hordeum vulgare subsp. vulgare cDNA clone HU01M16
5-PRIME, mRNA sequence
Length = 571
Score = 40.1 bits (20), Expect = 0.085
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 481 gagttccagccgcagtgcgtcacgaagc 508
||||||||||||||||| || |||||||
Sbjct: 206 gagttccagccgcagtgggtgacgaagc 179
>gb|BQ663266.1|BQ663266 HU01M16w HU Hordeum vulgare subsp. vulgare cDNA clone HU01M16
3-PRIME, mRNA sequence
Length = 570
Score = 40.1 bits (20), Expect = 0.085
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 481 gagttccagccgcagtgcgtcacgaagc 508
||||||||||||||||| || |||||||
Sbjct: 365 gagttccagccgcagtgggtgacgaagc 392
>gb|BQ768447.1|BQ768447 EBro08_SQ011_B19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_B19 5', mRNA sequence
Length = 418
Score = 40.1 bits (20), Expect = 0.085
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 528 cagcacgtcccgctgcggcgccca 551
||||||||| ||||||||||||||
Sbjct: 149 cagcacgtctcgctgcggcgccca 126
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 88,786
Number of Sequences: 312970
Number of extensions: 88786
Number of successful extensions: 25699
Number of sequences better than 0.5: 59
Number of HSP's better than 0.5 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25597
Number of HSP's gapped (non-prelim): 100
length of query: 631
length of database: 175,134,539
effective HSP length: 19
effective length of query: 612
effective length of database: 169,188,109
effective search space: 103543122708
effective search space used: 103543122708
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)