BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594130.2.1
(2756 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF064560.1|AF064560 Hordeum vulgare cultivar Bomi starch... 2151 0.0
gb|AF064561.1|AF064561 Hordeum vulgare cultivar Bomi starch... 1168 0.0
gb|CA022075.1|CA022075 HZ42B15r HZ Hordeum vulgare subsp. v... 803 0.0
gb|BE195628.2|BE195628 HVSMEh0089P20f Hordeum vulgare 5-45 ... 751 0.0
gb|BU967331.1|BU967331 HB03P08r BC Hordeum vulgare subsp. v... 686 0.0
gb|BU986646.1|BU986646 HF12I02r HF Hordeum vulgare subsp. v... 670 0.0
gb|BU966891.1|BU966891 HB02K24r BC Hordeum vulgare subsp. v... 642 0.0
gb|BF065047.1|BF065047 HV_CEb0022L05f Hordeum vulgare seedl... 634 e-180
gb|AV913706.1|AV913706 AV913706 K. Sato unpublished cDNA li... 601 e-170
gb|BU972445.1|BU972445 HB21K16r BC Hordeum vulgare subsp. v... 599 e-169
gb|AV914376.1|AV914376 AV914376 K. Sato unpublished cDNA li... 563 e-158
gb|BU996927.1|BU996927 HI06F01r HI Hordeum vulgare subsp. v... 551 e-155
gb|BU967173.1|BU967173 HB03H24r BC Hordeum vulgare subsp. v... 496 e-138
gb|BU970967.1|BU970967 HB16D15r BC Hordeum vulgare subsp. v... 496 e-138
gb|BM443964.2|BM443964 EBem09_SQ002_F04_R embryo, 1 Day ger... 452 e-125
gb|BM444013.2|BM444013 EBem09_SQ002_L12_R embryo, 1 Day ger... 406 e-111
gb|BE196055.1|BE196055 HVSMEh0091D22f Hordeum vulgare 5-45 ... 404 e-111
gb|CV060106.1|CV060106 BNEL54e11 Barley EST endosperm libra... 398 e-109
gb|CA030569.1|CA030569 HX07H03r HX Hordeum vulgare subsp. v... 391 e-107
gb|BE196057.2|BE196057 HVSMEh0091D24f Hordeum vulgare 5-45 ... 383 e-104
gb|BI948738.1|BI948738 HVSMEl0010K17f Hordeum vulgare spike... 363 2e-098
gb|BG366889.2|BG366889 HVSMEi0008N13f Hordeum vulgare 20 DA... 343 2e-092
gb|BE602527.2|BE602527 HVSMEh0099J22f Hordeum vulgare 5-45 ... 337 1e-090
gb|BQ755138.1|BQ755138 EBed02_SQ003_N09_R endosperm, 8 DPA,... 333 2e-089
gb|AV921312.1|AV921312 AV921312 K. Sato unpublished cDNA li... 311 7e-083
gb|CV060003.1|CV060003 BNEL53d1 Barley EST endosperm librar... 303 2e-080
gb|CA029212.1|CA029212 HZ64I18r HZ Hordeum vulgare subsp. v... 268 9e-070
gb|CV060196.1|CV060196 BNEL55e10 Barley EST endosperm libra... 254 1e-065
gb|BI948391.1|BI948391 HVSMEl0009F19f Hordeum vulgare spike... 246 3e-063
gb|CB881353.1|CB881353 HM09I19w HM Hordeum vulgare subsp. v... 178 6e-043
gb|BU995206.1|BU995206 HM09I19r HM Hordeum vulgare subsp. v... 176 3e-042
gb|AJ432603.1|AJ432603 AJ432603 S00002 Hordeum vulgare subs... 168 6e-040
gb|BQ471544.1|BQ471544 HV02L24r HV Hordeum vulgare subsp. v... 168 6e-040
gb|BU970082.1|BU970082 HB13I18r BC Hordeum vulgare subsp. v... 168 6e-040
gb|AW982619.3|AW982619 HVSMEg0003M05f Hordeum vulgare pre-a... 165 1e-038
gb|CB880027.1|CB880027 HM05E08w HM Hordeum vulgare subsp. v... 163 4e-038
gb|BU994498.1|BU994498 HM07E08r HM Hordeum vulgare subsp. v... 161 2e-037
gb|CA025941.1|CA025941 HZ53J13r HZ Hordeum vulgare subsp. v... 127 2e-027
gb|AJ460560.1|AJ460560 AJ460560 S00002 Hordeum vulgare subs... 111 1e-022
gb|CB875153.1|CB875153 HX07H03w HX Hordeum vulgare subsp. v... 111 1e-022
gb|CV060459.1|CV060459 BNEL58d11 Barley EST endosperm libra... 92 1e-016
gb|AF064563.1|AF064563 Hordeum vulgare cultivar Bomi starch... 80 4e-013
gb|CA025454.1|CA025454 HZ52D11r HZ Hordeum vulgare subsp. v... 78 2e-012
gb|AF064562.1|AF064562 Hordeum vulgare cultivar Bomi starch... 56 6e-006
gb|BM097896.2|BM097896 EBpi03_SQ001_P15_R pistil, 4 DPA, no... 54 3e-005
gb|BG367041.1|BG367041 HVSMEi0009O06f Hordeum vulgare 20 DA... 52 1e-004
gb|BM441900.2|BM441900 EBed07_SQ001_N21_R endosperm, 28 DPA... 52 1e-004
gb|BU968118.1|BU968118 HB06H16r BC Hordeum vulgare subsp. v... 52 1e-004
gb|BU969855.1|BU969855 HB12M24r BC Hordeum vulgare subsp. v... 52 1e-004
gb|BU971976.1|BU971976 HB20D20r BC Hordeum vulgare subsp. v... 52 1e-004
gb|BQ759418.1|BQ759418 EBpi01_SQ004_P07_R pistil, 1 DPA, no... 50 4e-004
gb|BM368073.1|BM368073 EBed01_SQ002_B11_R endosperm, 6 DPA,... 46 0.006
gb|BM441043.2|BM441043 EBed02_SQ002_E01_R endosperm, 8 DPA,... 46 0.006
gb|BQ754975.1|BQ754975 EBed02_SQ003_F18_R endosperm, 8 DPA,... 46 0.006
gb|CV062407.1|CV062407 BNEL79g1 Barley EST endosperm librar... 46 0.006
gb|CV063992.1|CV063992 BNEL96b6 Barley EST endosperm librar... 46 0.006
gb|AW983497.2|AW983497 HVSMEg0010N11f Hordeum vulgare pre-a... 44 0.024
gb|BG416474.1|BG416474 HVSMEk0012G24f Hordeum vulgare testa... 44 0.024
gb|AV919407.1|AV919407 AV919407 K. Sato unpublished cDNA li... 42 0.097
gb|BJ464040.1|BJ464040 BJ464040 K. Sato unpublished cDNA li... 42 0.097
gb|BJ466312.1|BJ466312 BJ466312 K. Sato unpublished cDNA li... 42 0.097
gb|BU966674.1|BU966674 HB02A08r BC Hordeum vulgare subsp. v... 42 0.097
gb|BU970604.1|BU970604 HB15C08r BC Hordeum vulgare subsp. v... 42 0.097
gb|BQ764029.1|BQ764029 EBro03_SQ006_G03_R root, 3 week, wat... 40 0.38
gb|BU975349.1|BU975349 HB30O07r BC Hordeum vulgare subsp. v... 40 0.38
>gb|AF064560.1|AF064560 Hordeum vulgare cultivar Bomi starch branching enzyme IIa (sbeIIa)
mRNA, nuclear gene encoding plastid protein, complete cds
Length = 2554
Score = 2151 bits (1085), Expect = 0.0
Identities = 1822/2070 (88%)
Strand = Plus / Plus
Query: 352 ggagaaaccacgagttatcccaccaccaggagatggccaacgaatatatgagattgaccc 411
||||||||| | |||| ||||| |||||||||||| ||| |||||| |||||||||||
Sbjct: 129 ggagaaaccgcaagttgtcccaaaaccaggagatgggcaaaaaatatacgagattgaccc 188
Query: 412 aatgttggaagggtttcggggtcaccttgactaccgatacagtgaatataagagattacg 471
|| | || ||| |||||| | || ||||||||||||||||| ||||| |||||| | ||
Sbjct: 189 aacgctgaaagattttcggagccatcttgactaccgatacagcgaatacaagagaattcg 248
Query: 472 tgcggctattgatcaacatgaaggtggtttggatgcattttcacgcggttacgaaaagct 531
||| |||||||| |||||||||||||| ||||| | ||||| || ||||| ||||||||
Sbjct: 249 tgctgctattgaccaacatgaaggtggattggaagttttttctcgtggttatgaaaagct 308
Query: 532 tggatttactcgcagcgctgaaggtatcacttacagagaatgggctcctggagcatactc 591
||||||||| ||||| ||| |||||||||||||| ||||||||||||||||||| | ||
Sbjct: 309 tggatttacccgcagtgctaaaggtatcacttaccgagaatgggctcctggagcgcattc 368
Query: 592 tgcagcattagtaggtgacttcaacaactggaacccaaatgctgatgctatggccagaaa 651
||||||||||||||||||||||||||| |||||||||||||| ||| ||||| ||||| |
Sbjct: 369 tgcagcattagtaggtgacttcaacaattggaacccaaatgcagatactatgaccagaga 428
Query: 652 tgagtacggcgtttgggagattttcctgcctaacaatgctgatggttcccctgctattcc 711
||| || || ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 429 tgattatggtgtttgggagattttcctccctaacaatgctgatggatcccctgctattcc 488
Query: 712 tcatggctcacgtgtaaagatacggatggacacaccatctggtgttaaggattccattcc 771
|||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||| |
Sbjct: 489 tcatggctcacgtgtaaagatacggatggatactccatctggtgtgaaggattcaatttc 548
Query: 772 tgcctggatcaagttttctgtgcaggctccaggtgaaataccatacaacggtatatatta 831
||| ||||||||||| |||||||||||||||||||||||||||| ||| || ||||||||
Sbjct: 549 tgcttggatcaagttctctgtgcaggctccaggtgaaataccattcaatggcatatatta 608
Query: 832 tgacccacctgaagaggagaaatatgtattcaaacaccctcaacctaagcggcccaagtc 891
||| ||||||||||||||||| ||||| ||| |||| ||||||||||| || || ||||
Sbjct: 609 tgatccacctgaagaggagaagtatgtcttccaacatcctcaacctaaacgaccagagtc 668
Query: 892 actgcggatatatgaatcacatgttggaatgagtagcccggaaccaaagataaatacata 951
||| |||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||
Sbjct: 669 actaaggatatatgaatcacacattggaatgagcagcccggaaccgaagataaattcata 728
Query: 952 tgctaacttcagagatgaggtgcttccaagaattaaaaagcttggatacaatgcagtaca 1011
|||||| || || ||||||||||| ||||||||||||| |||||||||||||||||| ||
Sbjct: 729 tgctaattttagggatgaggtgctgccaagaattaaaaggcttggatacaatgcagtgca 788
Query: 1012 gataatggcaatccaggaacactcttattatgcaagctttgggtaccatgttacgaannn 1071
|||||||||||||||||| || || || ||||| |||||||||||||||||||| ||
Sbjct: 789 gataatggcaatccaggagcattcatactatgcgagctttgggtaccatgttactaattt 848
Query: 1072 nnnngccccaagtagccgttttgggactccagaggacctaaaatctcttattgataaagc 1131
|| ||||||||||||||||| |||||||||||| ||||||| | || |||| |||
Sbjct: 849 ttttgcaccaagtagccgttttggaactccagaggacttaaaatccttgatcgatagagc 908
Query: 1132 gcatgagcttggcttgctagtgcttatggatattgttcatagtcattcatcaaataatac 1191
||||||||||| ||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct: 909 acatgagcttggtttgcttgttcttatggatattgttcatagtcattcgtcaaataatac 968
Query: 1192 cttggatggtttgaatggtttcgatggcaccgatacacattacttccatggtggtccacg 1251
| | || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 969 ccttgacggtttgaatggtttcgatggcactgatacacattacttccacggtggtccacg 1028
Query: 1252 aggccatcattggatgtgggattctcgcctattcaattatgggagttgggaagttttgag 1311
|||||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||
Sbjct: 1029 tggccatcattggatgtgggattctcgtctgttcaactatgggagttgggaagtattaag 1088
Query: 1312 atttctattgtcaaatgcgagatggtggcttgaagaatataaatttgatgggtttcgatt 1371
||| || ||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 1089 attcttactgtcaaacgcgagatggtggcttgaagaatataagtttgatggatttcgatt 1148
Query: 1372 tgatggggtgacctccatgatgtatactcaccatggattacaagtgacattcactgggaa 1431
|||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 1149 tgatggggtgacttccatgatgtatactcaccatggattacaaatgacatttactgggaa 1208
Query: 1432 ctatggcgagtattttggatttgccactgatgttgatgcagtagtttacctaatgctggt 1491
||||||||||||||||||||| ||||||||||||||||| || |||||| ||||||||||
Sbjct: 1209 ctatggcgagtattttggattcgccactgatgttgatgcggtggtttacttaatgctggt 1268
Query: 1492 aaacgatcttattcgtgggctttatccagaagctgtatccattggcgaagatgtcagcgg 1551
|||||||| |||| ||| |||||||| || |||||||||||||| ||||||||||||||
Sbjct: 1269 caacgatctaattcatggactttatccggatgctgtatccattggtgaagatgtcagcgg 1328
Query: 1552 aatgcctacattttgtatccctgtccaagatggtggtgttggttttgattatcgtcttca 1611
||||||||||||||| |||||||||| ||||||||||||||||||||| ||||| || ||
Sbjct: 1329 aatgcctacattttgcatccctgtcccagatggtggtgttggttttgactatcgcctgca 1388
Query: 1612 tatggctgtcccagacaaatggattgaacttctgaagcaaagtgacgaatattgggaaat 1671
||||||||| |||| |||||||||||||| || |||||||||||||||| |||| ||||
Sbjct: 1389 tatggctgtagcagataaatggattgaactcctcaagcaaagtgacgaatcttggaaaat 1448
Query: 1672 gggtgacatcgtgcacaccttaacaaatagaaggtggcttgaaaagtgtgtcacttattg 1731
||| || || ||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 1449 gggcgatattgtgcacaccctaacaaatagaaggtggcttgagaagtgtgtcacttatgc 1508
Query: 1732 tgaaagtcatgatcaagctcttgttggtgacaagacaattgcattctggttgatggataa 1791
||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct: 1509 agaaagtcatgatcaagcactagttggtgacaagactattgcattctggttgatggataa 1568
Query: 1792 ggatatgtatgatttcatggctctggacaggccttcaacgcctcgcatcgatcgtgggat 1851
||||||||||||||||||||||||||| || |||||||| |||||||| |||||||| ||
Sbjct: 1569 ggatatgtatgatttcatggctctggatagaccttcaacccctcgcattgatcgtggcat 1628
Query: 1852 agcattacataaaatgattaggcttgtcacaatgggtttaggaggtgaaggctatctaaa 1911
|||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| ||
Sbjct: 1629 agcattacataaaatgatcaggcttgtcaccatgggtttaggtggcgaaggctatcttaa 1688
Query: 1912 tttcatgggaaatgagtttgggcatcctgaatggatagattttccaagaggtcctcaaag 1971
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1689 tttcatgggaaatgagtttgggcatcctgaatggatagattttccaagaggtccgcaaac 1748
Query: 1972 tcttccaaatggctccgtcattcctgggaataacaatagctttgataaatgccgccgtag 2031
|||||||| ||| || | ||||| ||||||||||| | ||||||||||||||||||
Sbjct: 1749 tcttccaaccggcaaagttctccctggaaataacaatagttatgataaatgccgccgtag 1808
Query: 2032 atttgaccttggagatgcagattatcttagatatcgtggtatgcaagagtttgaccaggc 2091
|||||| |||||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct: 1809 atttgatcttggagatgcagattttcttagatatcgtggtatgcaagagttcgatcaggc 1868
Query: 2092 aatgcagcaccttgagggaaaatatgaattcatgacatctgatcactcatatgtatcacg 2151
||||||||| ||||||| |||||||| || ||||||||||| ||| ||||| || ||
Sbjct: 1869 aatgcagcatcttgaggaaaaatatgggtttatgacatctgagcaccagtatgtttctcg 1928
Query: 2152 gaagcatgaggaggataaggtgatcatctttgagagaggagatttggtcttcgtgttcaa 2211
||| |||||||| ||||||||||||||||| || |||||||||||||| || || |||||
Sbjct: 1929 gaaacatgaggaagataaggtgatcatcttcgaaagaggagatttggtatttgttttcaa 1988
Query: 2212 cttccactggagcaatagctattttgactatcgcgttggttgtttcaagcctgggaagta 2271
||||||||||||||||||| | ||||| || ||||| |||| |||||||||||||||
Sbjct: 1989 cttccactggagcaatagcaaaaaagactaccgtgttgggtgttccaagcctgggaagta 2048
Query: 2272 caagatcgttttagattctgacgatggccttttcggtggatttagtcggcttgatcatga 2331
|||| | | ||||| ||||| |||| || || |||||||| || |||||||||||||
Sbjct: 2049 caaggtggccttagactctgatgatgcactctttggtggattcagcaggcttgatcatga 2108
Query: 2332 cgctgagtacttcactgctgactggccgcatgacaacaggccgtgttctttctcggtcta 2391
| || |||||||| | || ||||||||||||||||| | ||||||||||| ||
Sbjct: 2109 tgtcgactacttcacaaccgaacatccgcatgacaacaggccacgctctttctcggtgta 2168
Query: 2392 tgcacccagcagaacagccgtcgtatatgc 2421
| || |||||||| || ||||| |||||
Sbjct: 2169 cactccgagcagaactgcggtcgtgtatgc 2198
>gb|AF064561.1|AF064561 Hordeum vulgare cultivar Bomi starch branching enzyme IIb (sbeIIb)
mRNA, nuclear gene encoding plastid protein, complete cds
Length = 2780
Score = 1168 bits (589), Expect = 0.0
Identities = 1506/1814 (83%)
Strand = Plus / Plus
Query: 501 tggatgcattttcacgcggttacgaaaagcttggatttactcgcagcgctgaaggtatca 560
|||||| |||||| ||||| ||||| ||| |||||||| ||||||||||||||||||||
Sbjct: 563 tggatgtattttcccgcggctacgagaagtttggatttgttcgcagcgctgaaggtatca 622
Query: 561 cttacagagaatgggctcctggagcatactctgcagcattagtaggtgacttcaacaact 620
||||| |||||||||||||||||||| | |||||||||||||| || ||||||||||| |
Sbjct: 623 cttaccgagaatgggctcctggagcagattctgcagcattagttggcgacttcaacaatt 682
Query: 621 ggaacccaaatgctgatgctatggccagaaatgagtacggcgtttgggagattttcctgc 680
|| | |||| ||| || |||| || |||||| | || ||||||||||||| ||||
Sbjct: 683 gggatccaactgcagaccatatgagcaaaaatgacttgggtatttgggagatttttctgc 742
Query: 681 ctaacaatgctgatggttcccctgctattcctcatggctcacgtgtaaagatacggatgg 740
| |||||||| |||||||| || | ||||||||||||||||| || ||| | |||||||
Sbjct: 743 caaacaatgcagatggttcgccgccaattcctcatggctcacgggtgaaggtgcggatgg 802
Query: 741 acacaccatctggtgttaaggattccattcctgcctggatcaagttttctgtgcaggctc 800
| || |||||||| |||||||| |||||||| |||||||||| || |||||| |||
Sbjct: 803 atactccatctgggacaaaggattcaattcctgcttggatcaagtactccgtgcagactc 862
Query: 801 caggtgaaataccatacaacggtatatattatgacccacctgaagaggagaaatatgtat 860
|||| || ||||||||||| || |||||||||||||| |||||||||||||| |||||||
Sbjct: 863 caggagatataccatacaatggaatatattatgaccctcctgaagaggagaagtatgtat 922
Query: 861 tcaaacaccctcaacctaagcggcccaagtcactgcggatatatgaatcacatgttggaa 920
|||| || ||||||||||| || || || ||| |||||||||||||| |||||||||| |
Sbjct: 923 tcaagcatcctcaacctaaacgaccaaaatcattgcggatatatgaaacacatgttggca 982
Query: 921 tgagtagcccggaaccaaagataaatacatatgctaacttcagagatgaggtgcttccaa 980
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct: 983 tgagtagcccggaaccaaagatcaacacatatgcaaacttcagagatgaggtgcttccaa 1042
Query: 981 gaattaaaaagcttggatacaatgcagtacagataatggcaatccaggaacactcttatt 1040
||||||||| ||||||||||||||||| || |||||||||||||| || || || || |
Sbjct: 1043 gaattaaaagacttggatacaatgcagttcaaataatggcaatccaagagcattcatact 1102
Query: 1041 atgcaagctttgggtaccatgttacgaannnnnnngccccaagtagccgttttgggactc 1100
||| ||||||||||||||||||||| || || |||||||||||||||||| | |
Sbjct: 1103 atggaagctttgggtaccatgttaccaatttctttgcaccaagtagccgttttgggtccc 1162
Query: 1101 cagaggacctaaaatctcttattgataaagcgcatgagcttggcttgctagtgcttatgg 1160
|||| || ||||||| | ||||||| ||| || |||||||| ||||| || || ||||
Sbjct: 1163 cagaagatttaaaatccttgattgatagagctcacgagcttggtttgcttgtcctgatgg 1222
Query: 1161 atattgttcatagtcattcatcaaataataccttggatggtttgaatggtttcgatggca 1220
|| ||||||| ||||| |||||| |||||||||||| |||||||||||||| |||||||
Sbjct: 1223 atgttgttcacagtcacgcatcaagtaataccttggacggtttgaatggttttgatggca 1282
Query: 1221 ccgatacacattacttccatggtggtccacgaggccatcattggatgtgggattctcgcc 1280
| |||||||||||||| ||||| || |||| |||||||| |||||||||||||||||
Sbjct: 1283 cggatacacattactttcatggcggctcacggggccatcactggatgtgggattctcgtg 1342
Query: 1281 tattcaattatgggagttgggaagttttgagatttctattgtcaaatgcgagatggtggc 1340
| ||||| || |||| | ||||||| | || |||||| | || ||||| ||||||||||
Sbjct: 1343 tgttcaactacgggaataaggaagttataaggtttctactttccaatgcaagatggtggc 1402
Query: 1341 ttgaagaatataaatttgatgggtttcgatttgatggggtgacctccatgatgtatactc 1400
| || |||||||| || ||||| || ||||| || || | |||||||||||||||||| |
Sbjct: 1403 tagaggaatataagttcgatggtttccgattcgacggcgcgacctccatgatgtataccc 1462
Query: 1401 accatggattacaagtgacattcactgggaactatggcgagtattttggatttgccactg 1460
|||||||||||||||| || || || |||| ||| || |||||||| |||||||| |
Sbjct: 1463 accatggattacaagtaacctttacagggagctaccatgaatattttggctttgccacgg 1522
Query: 1461 atgttgatgcagtagtttacctaatgctggtaaacgatcttattcgtgggctttatccag 1520
|||| |||||||| |||||| | |||||||| || ||||| |||| | ||||||||| |
Sbjct: 1523 atgtagatgcagttgtttacttgatgctggtgaatgatctaattcacgcgctttatcctg 1582
Query: 1521 aagctgtatccattggcgaagatgtcagcggaatgcctacattttgtatccctgtccaag 1580
|||| || | ||||| |||||||| || ||||||||||||||| | ||||| ||||
Sbjct: 1583 aagccgttactattggtgaagatgttagtggaatgcctacatttgcccttcctgttcaag 1642
Query: 1581 atggtggtgttggttttgattatcgtcttcatatggctgtcccagacaaatggattgaac 1640
|||||| ||||||||||| ||||| | |||||||| || | || |||||||||||||
Sbjct: 1643 ttggtggggttggttttgactatcgcttacatatggccgttgccgataaatggattgaac 1702
Query: 1641 ttctgaagcaaagtgacgaatattgggaaatgggtgacatcgtgcacaccttaacaaata 1700
|||| || ||| || ||| |||||| |||||| | || |||||||| |||||||||
Sbjct: 1703 ttctcaaaggaagcgatgaaggttgggagatgggtaatattgtgcacacactaacaaata 1762
Query: 1701 gaaggtggcttgaaaagtgtgtcacttattgtgaaagtcatgatcaagctcttgttggtg 1760
|||||||| | ||||||||||| |||||| |||||||||||||||||| |||||||| |
Sbjct: 1763 gaaggtggttggaaaagtgtgttacttatgctgaaagtcatgatcaagcacttgttggag 1822
Query: 1761 acaagacaattgcattctggttgatggataaggatatgtatgatttcatggctctggaca 1820
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 1823 acaagactattgcattctggttgatggacaaggatatgtatgatttcatggctctgaacg 1882
Query: 1821 ggccttcaacgcctcgcatcgatcgtgggatagcattacataaaatgattaggcttgtca 1880
| ||||| || ||| || ||||| || |||||| | |||||||||||||| ||| |||
Sbjct: 1883 gaccttcgacacctaatattgatcgcggaatagcactgcataaaatgattagacttatca 1942
Query: 1881 caatgggtttaggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctg 1940
|||||| ||||||||| || || ||||| || || |||||||||||||| ||||||||||
Sbjct: 1943 caatggctttaggaggagagggttatcttaactttatgggaaatgagttcgggcatcctg 2002
Query: 1941 aatggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcattcctggga 2000
|||||||||| ||||||||||| || ||| ||||||| ||| |||| || || |
Sbjct: 2003 aatggatagactttccaagaggcccacaagtacttccaactggtaagttcatcccaggaa 2062
Query: 2001 ataacaatagctttgataaatgccgccgtagatttgaccttggagatgcagattatctta 2060
||||||| || | || |||||||| || ||||||||||| || |||||||| | ||| |
Sbjct: 2063 ataacaacagttacgacaaatgccgtcgaagatttgacctgggtgatgcagaatttctca 2122
Query: 2061 gatatcgtggtatgcaagagtttgaccaggcaatgcagcaccttgagggaaaatatgaat 2120
| |||| ||||||||| | ||||| |||||||||||||| ||||||| |||||||| |
Sbjct: 2123 ggtatcatggtatgcagcaatttgatcaggcaatgcagcatcttgaggaaaaatatggct 2182
Query: 2121 tcatgacatctgatcactcatatgtatcacggaagcatgaggaggataaggtgatcatct 2180
| |||||||| || ||| || ||||| ||||| || ||||| |||||||||||| | |
Sbjct: 2183 ttatgacatcagaccaccagtacgtatctcggaaacacgaggaagataaggtgatcgtgt 2242
Query: 2181 ttgagagaggagatttggtcttcgtgttcaacttccactggagcaatagctattttgact 2240
|||| | ||| || ||||| || |||||||||||||||||||| ||||||||||| ||||
Sbjct: 2243 ttgaaaaaggggacttggtatttgtgttcaacttccactggagtaatagctatttcgact 2302
Query: 2241 atcgcgttggttgtttcaagcctgggaagtacaagatcgttttagattctgacgatggcc 2300
| || || ||||| || |||||||||||||||||| | || ||||| || |||| ||| |
Sbjct: 2303 accgggtcggttgcttaaagcctgggaagtacaaggtggtgttagactcagacgctggac 2362
Query: 2301 ttttcggtggattt 2314
| || |||||||||
Sbjct: 2363 tctttggtggattt 2376
>gb|CA022075.1|CA022075 HZ42B15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42B15
5-PRIME, mRNA sequence
Length = 672
Score = 803 bits (405), Expect = 0.0
Identities = 594/657 (90%)
Strand = Plus / Plus
Query: 1475 gtttacctaatgctggtaaacgatcttattcgtgggctttatccagaagctgtatccatt 1534
|||||| |||||||||| |||||||| |||| ||| |||||||| || ||||||||||||
Sbjct: 16 gtttacttaatgctggtcaacgatctaattcatggactttatccggatgctgtatccatt 75
Query: 1535 ggcgaagatgtcagcggaatgcctacattttgtatccctgtccaagatggtggtgttggt 1594
|| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 76 ggtgaagatgtcagcggaatgcctacattttgcatccctgtcccagatggtggtgttggt 135
Query: 1595 tttgattatcgtcttcatatggctgtcccagacaaatggattgaacttctgaagcaaagt 1654
||||| ||||| || ||||||||||| |||| |||||||||||||| || |||||||||
Sbjct: 136 tttgactatcgcctgcatatggctgtagcagataaatggattgaactcctcaagcaaagt 195
Query: 1655 gacgaatattgggaaatgggtgacatcgtgcacaccttaacaaatagaaggtggcttgaa 1714
||||||| |||| ||||||| || || ||||||||| ||||||||||||||||||||||
Sbjct: 196 gacgaatcttggaaaatgggcgatattgtgcacaccctaacaaatagaaggtggcttgag 255
Query: 1715 aagtgtgtcacttattgtgaaagtcatgatcaagctcttgttggtgacaagacaattgca 1774
||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 256 aagtgtgtcacttatgcagaaagtcatgatcaagcactagttggtgacaagactattgca 315
Query: 1775 ttctggttgatggataaggatatgtatgatttcatggctctggacaggccttcaacgcct 1834
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct: 316 ttctggttgatggataaggatatgtatgatttcatggctctggatagaccttcaacccct 375
Query: 1835 cgcatcgatcgtgggatagcattacataaaatgattaggcttgtcacaatgggtttagga 1894
||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 376 cgcattgatcgtggcatagcattacataaaatgatcaggcttgtcaccatgggtttaggt 435
Query: 1895 ggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagatttt 1954
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggcgaaggctatcttaatttcatgggaaatgagtttgggcatcctgaatggatagatttt 495
Query: 1955 ccaagaggtcctcaaagtcttccaaatggctccgtcattcctgggaataacaatagcttt 2014
||||||||||| |||| |||||||| ||| || | ||||| ||||||||||| | |
Sbjct: 496 ccaagaggtccgcaaactcttccaaccggcaaagttctccctggaaataacaatagttat 555
Query: 2015 gataaatgccgccgtagatttgaccttggagatgcagattatcttagatatcgtggtatg 2074
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 556 gataaatgccgccgtagatttgatcttggagatgcagattttcttagatatcgtggtatg 615
Query: 2075 caagagtttgaccaggcaatgcagcaccttgagggaaaatatgaattcatgacatct 2131
|||||||| || |||||||||||||| ||||||| |||||||| || |||||||||
Sbjct: 616 caagagttcgatcaggcaatgcagcatcttgaggaaaaatatgggtttatgacatct 672
>gb|BE195628.2|BE195628 HVSMEh0089P20f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0089P20f, mRNA sequence
Length = 801
Score = 751 bits (379), Expect = 0.0
Identities = 653/742 (88%), Gaps = 2/742 (0%)
Strand = Plus / Plus
Query: 1502 attcgtgggctttatccagaagctgtatccattggcgaagatgtcagcggaatgcctaca 1561
|||| ||| |||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct: 2 attcatggactttatccggatgctgtatccattggtgaagatgtcagcggaatgcctaca 61
Query: 1562 ttttgtatccctgtccaagatggtggtgttggttttgattatcgtcttcatatggctgtc 1621
||||| |||||||||| ||||||||||||||||||||| ||||| || |||||||||||
Sbjct: 62 ttttgcatccctgtcccagatggtggtgttggttttgactatcgcctgcatatggctgta 121
Query: 1622 ccagacaaatggattgaacttctgaagcaaagtgacgaatattgggaaatgggtgacatc 1681
|||| |||||||||||||| || |||||||||||||||| |||| ||||||| || ||
Sbjct: 122 gcagataaatggattgaactcctcaagcaaagtgacgaatcttggaaaatgggcgatatt 181
Query: 1682 gtgcacaccttaacaaatagaaggtggcttgaaaagtgtgtcacttattgtgaaagtcat 1741
||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 182 gtgcacaccctaacaaatagaaggtggcttgagaagtgtgtcacttatgcagaaagtcat 241
Query: 1742 gatcaagctcttgttggtgacaagacaattgcattctggttgatggataaggatatgtat 1801
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 242 gatcaagcactagttggtgacaagactattgcattctggttgatggataaggatatgtat 301
Query: 1802 gatttcatggctctggacaggccttcaacgcctcgcatcgatcgtgggatagcattacat 1861
||||||||||||||||| || |||||||| |||||||| |||||||| ||||||||||||
Sbjct: 302 gatttcatggctctggatagaccttcaacccctcgcattgatcgtggcatagcattacat 361
Query: 1862 aaaatgattaggcttgtcacaatgggtttaggaggtgaaggctatctaaatttcatggga 1921
|||||||| ||||||||||| ||||||||||| || ||||||||||| ||||||||||||
Sbjct: 362 aaaatgatcaggcttgtcaccatgggtttaggtggcgaaggctatcttaatttcatggga 421
Query: 1922 aatgagtttgggcatcctgaatggatagattttccaagaggtcctcaaagtcttccaaat 1981
|||||||||||||||||||||||||||||||||||||| ||||| || | ||||||||
Sbjct: 422 aatgagtttgggcatcctgaatggatagattttccaaggggtccgcanactcttccaacc 481
Query: 1982 ggctccgtcattcctgggaataacaatagctttgataaatgccgccgtagatttgacctt 2041
||| || | ||||| ||||||||||| | ||||||||||||||||| |||||| |||
Sbjct: 482 ggcaaagttctccctggcaataacaatagttatgataaatgccgccgtaaatttgatctt 541
Query: 2042 ggagatgcagattatcttagatatcgtggtatgcaagagtttgaccaggcaatgcagcac 2101
||||||||||||| ||||||||||||||| ||||||||||| || |||||||||| ||
Sbjct: 542 ggagatgcagattttcttagatatcgtggaatgcaagagttcgatcaggcaatgccccat 601
Query: 2102 cttgagggaaaatatgaattcatgacatctgatcactcatatgtatcacggaagcatgag 2161
|||||||||||| | || ||||||||||| ||| ||||| || ||||| | ||||
Sbjct: 602 cttgagggaaaaatagggtttatgacatctgagcaccagtatgtttctcggaaacttgag 661
Query: 2162 gaggataaggtgatcatc-tttgagagaggagatttggtcttcgtgttcaacttccact- 2219
|| |||||||||| |||| ||||| |||||| ||||||| || || |||||||| | ||
Sbjct: 662 gaagataaggtgaacatcttttgaaagaggaaatttggtatttgttttcaactttccctg 721
Query: 2220 ggagcaatagctattttgacta 2241
||||||||| || |||||||||
Sbjct: 722 ggagcaataacttttttgacta 743
>gb|BU967331.1|BU967331 HB03P08r BC Hordeum vulgare subsp. vulgare cDNA clone HB03P08
5-PRIME, mRNA sequence
Length = 537
Score = 686 bits (346), Expect = 0.0
Identities = 478/522 (91%)
Strand = Plus / Plus
Query: 1153 gcttatggatattgttcatagtcattcatcaaataataccttggatggtttgaatggttt 1212
||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||||
Sbjct: 10 gcttatggatattgttcatagtcattcgtcaaataatacccttgacggtttgaatggttt 69
Query: 1213 cgatggcaccgatacacattacttccatggtggtccacgaggccatcattggatgtggga 1272
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 70 cgatggcactgatacacattacttccacggtggtccacgtggccatcattggatgtggga 129
Query: 1273 ttctcgcctattcaattatgggagttgggaagttttgagatttctattgtcaaatgcgag 1332
|||||| || ||||| ||||||||||||||||| || ||||| || ||||||| |||||
Sbjct: 130 ttctcgtctgttcaactatgggagttgggaagtattaagattcttactgtcaaacgcgag 189
Query: 1333 atggtggcttgaagaatataaatttgatgggtttcgatttgatggggtgacctccatgat 1392
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct: 190 atggtggcttgaagaatataagtttgatggatttcgatttgatggggtgacttccatgat 249
Query: 1393 gtatactcaccatggattacaagtgacattcactgggaactatggcgagtattttggatt 1452
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 250 gtatactcaccatggattacaaatgacatttactgggaactatggcgagtattttggatt 309
Query: 1453 tgccactgatgttgatgcagtagtttacctaatgctggtaaacgatcttattcgtgggct 1512
||||||||||||||||| || |||||| |||||||||| |||||||| |||| ||| ||
Sbjct: 310 cgccactgatgttgatgcggtggtttacttaatgctggtcaacgatctaattcatggact 369
Query: 1513 ttatccagaagctgtatccattggcgaagatgtcagcggaatgcctacattttgtatccc 1572
|||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 370 ttatccggatgctgtatccattggtgaagatgtcagcggaatgcctacattttgcatccc 429
Query: 1573 tgtccaagatggtggtgttggttttgattatcgtcttcatatggctgtcccagacaaatg 1632
||||| ||||||||||||||||||||| ||||| || ||||||||||| |||| |||||
Sbjct: 430 tgtcccagatggtggtgttggttttgactatcgcctgcatatggctgtagcagataaatg 489
Query: 1633 gattgaacttctgaagcaaagtgacgaatattgggaaatggg 1674
||||||||| || |||||||||||||||| |||| |||||||
Sbjct: 490 gattgaactcctcaagcaaagtgacgaatcttggaaaatggg 531
>gb|BU986646.1|BU986646 HF12I02r HF Hordeum vulgare subsp. vulgare cDNA clone HF12I02
5-PRIME, mRNA sequence
Length = 623
Score = 670 bits (338), Expect = 0.0
Identities = 550/623 (88%)
Strand = Plus / Plus
Query: 710 cctcatggctcacgtgtaaagatacggatggacacaccatctggtgttaaggattccatt 769
|||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||
Sbjct: 1 cctcatggctcacgtgtaaagatacggatggatactccatctggtgtgaaggattcaatt 60
Query: 770 cctgcctggatcaagttttctgtgcaggctccaggtgaaataccatacaacggtatatat 829
|||| ||||||||||| |||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 61 tctgcttggatcaagttctctgtgcaggctccaggtgaaataccattcaatggcatatat 120
Query: 830 tatgacccacctgaagaggagaaatatgtattcaaacaccctcaacctaagcggcccaag 889
||||| ||||||||||||||||| ||||| ||| |||| ||||||||||| || || ||
Sbjct: 121 tatgatccacctgaagaggagaagtatgtcttccaacatcctcaacctaaacgaccagag 180
Query: 890 tcactgcggatatatgaatcacatgttggaatgagtagcccggaaccaaagataaataca 949
||||| |||||||||||||||| |||||||||| ||||||||||| ||||||||| ||
Sbjct: 181 tcactaaggatatatgaatcacacattggaatgagcagcccggaaccgaagataaattca 240
Query: 950 tatgctaacttcagagatgaggtgcttccaagaattaaaaagcttggatacaatgcagta 1009
|||||||| || || ||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 241 tatgctaattttagggatgaggtgctgccaagaattaaaaggcttggatacaatgcagtg 300
Query: 1010 cagataatggcaatccaggaacactcttattatgcaagctttgggtaccatgttacgaan 1069
|||||||||||||||||||| || || || ||||| |||||||||||||||||||| ||
Sbjct: 301 cagataatggcaatccaggagcattcatactatgcgagctttgggtaccatgttactaat 360
Query: 1070 nnnnnngccccaagtagccgttttgggactccagaggacctaaaatctcttattgataaa 1129
|| ||||||||||||||||| |||||||||||| ||||||| | || |||| |
Sbjct: 361 ttttttgcaccaagtagccgttttggaactccagaggacttaaaatccttgatcgataga 420
Query: 1130 gcgcatgagcttggcttgctagtgcttatggatattgttcatagtcattcatcaaataat 1189
|| ||||||||||| ||||| || |||||||||||||||||||||||||| |||||||||
Sbjct: 421 gcacatgagcttggtttgcttgttcttatggatattgttcatagtcattcgtcaaataat 480
Query: 1190 accttggatggtttgaatggtttcgatggcaccgatacacattacttccatggtggtcca 1249
||| | || ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 481 acccttgacggtttgaatggtttcgatggcactgatacacattacttccacggtggtcca 540
Query: 1250 cgaggccatcattggatgtgggattctcgcctattcaattatgggagttgggaagttttg 1309
|| |||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||
Sbjct: 541 cgtggccatcattggatgtgggattctcgtctgttcaactatgggagttgggaagtatta 600
Query: 1310 agatttctattgtcaaatgcgag 1332
||||| || ||||||| |||||
Sbjct: 601 agattcttactgtcaaacgcgag 623
>gb|BU966891.1|BU966891 HB02K24r BC Hordeum vulgare subsp. vulgare cDNA clone HB02K24
5-PRIME, mRNA sequence
Length = 550
Score = 642 bits (324), Expect = 0.0
Identities = 486/540 (90%)
Strand = Plus / Plus
Query: 526 aaagcttggatttactcgcagcgctgaaggtatcacttacagagaatgggctcctggagc 585
||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct: 11 aaagcttggatttacccgcagtgctaaaggtatcacttaccgagaatgggctcctggagc 70
Query: 586 atactctgcagcattagtaggtgacttcaacaactggaacccaaatgctgatgctatggc 645
| ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |
Sbjct: 71 gcattctgcagcattagtaggtgacttcaacaattggaacccaaatgcagatactatgac 130
Query: 646 cagaaatgagtacggcgtttgggagattttcctgcctaacaatgctgatggttcccctgc 705
|||| |||| || || ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 131 cagagatgattatggtgtttgggagattttcctccctaacaatgctgatggatcccctgc 190
Query: 706 tattcctcatggctcacgtgtaaagatacggatggacacaccatctggtgttaaggattc 765
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 191 tattcctcatggctcacgtgtaaagatacggatggatactccatctggtgtgaaggattc 250
Query: 766 cattcctgcctggatcaagttttctgtgcaggctccaggtgaaataccatacaacggtat 825
||| |||| ||||||||||| |||||||||||||||||||||||||||| ||| || ||
Sbjct: 251 aatttctgcttggatcaagttctctgtgcaggctccaggtgaaataccattcaatggcat 310
Query: 826 atattatgacccacctgaagaggagaaatatgtattcaaacaccctcaacctaagcggcc 885
||||||||| ||||||||||||||||| ||||| ||| |||| ||||||||||| || ||
Sbjct: 311 atattatgatccacctgaagaggagaagtatgtcttccaacatcctcaacctaaacgacc 370
Query: 886 caagtcactgcggatatatgaatcacatgttggaatgagtagcccggaaccaaagataaa 945
||||||| |||||||||||||||| |||||||||| ||||||||||| ||||||||
Sbjct: 371 agagtcactaaggatatatgaatcacacattggaatgagcagcccggaaccgaagataaa 430
Query: 946 tacatatgctaacttcagagatgaggtgcttccaagaattaaaaagcttggatacaatgc 1005
| |||||||||| || || ||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 431 ttcatatgctaattttagggatgaggtgctgccaagaattaaaaggcttggatacaatgc 490
Query: 1006 agtacagataatggcaatccaggaacactcttattatgcaagctttgggtaccatgttac 1065
||| |||||||||||||||||||| || || || ||||| ||||||||||||||||||||
Sbjct: 491 agtgcagataatggcaatccaggagcattcatactatgcgagctttgggtaccatgttac 550
>gb|BF065047.1|BF065047 HV_CEb0022L05f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022L05f, mRNA sequence
Length = 825
Score = 634 bits (320), Expect = e-180
Identities = 581/668 (86%)
Strand = Plus / Plus
Query: 1754 gttggtgacaagacaattgcattctggttgatggataaggatatgtatgatttcatggct 1813
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 gttggtgacaagactattgcattctggttgatggataaggatatgtatgatttcatggct 81
Query: 1814 ctggacaggccttcaacgcctcgcatcgatcgtgggatagcattacataaaatgattagg 1873
||||| || |||||||| |||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 82 ctggatagaccttcaacccctcgcattgatcgtggcatagcattacataaaatgatcagg 141
Query: 1874 cttgtcacaatgggtttaggaggtgaaggctatctaaatttcatgggaaatgagtttggg 1933
|||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct: 142 cttgtcaccatgggtttaggtggcgaaggctatcttaatttcatgggaaatgagtttggg 201
Query: 1934 catcctgaatggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcatt 1993
|||||||||||||||||||||||||| ||||| |||| |||||||| ||| || |
Sbjct: 202 catcctgaatggatagattttccaaggggtccgcaaactcttccaaccggcaaagttctc 261
Query: 1994 cctgggaataacaatagctttgataaatgccgccgtagatttgaccttggagatgcagat 2053
||||| ||||||||||| | |||||||||||||||||||||||| |||||||||||||||
Sbjct: 262 cctggcaataacaatagttatgataaatgccgccgtagatttgatcttggagatgcagat 321
Query: 2054 tatcttagatatcgtggtatgcaagagtttgaccaggcaatgcagcaccttgagggaaaa 2113
| ||||||||||||||||||||||||||| || |||||||||||||| ||||||| ||||
Sbjct: 322 tttcttagatatcgtggtatgcaagagttcgatcaggcaatgcagcatcttgaggaaaaa 381
Query: 2114 tatgaattcatgacatctgatcactcatatgtatcacggaagcatgaggaggataaggtg 2173
|||| || ||||||||||| ||| ||||| || ||||| |||||||| |||||||||
Sbjct: 382 tatgggtttatgacatctgagcaccagtatgtttctcggaaacatgaggaagataaggtg 441
Query: 2174 atcatctttgagagaggagatttggtcttcgtgttcaacttccactggagcaatagctat 2233
|||||||| || |||||||||||||| || || ||||||||||||||||||||||||| |
Sbjct: 442 atcatcttcgaaagaggagatttggtatttgttttcaacttccactggagcaatagcttt 501
Query: 2234 tttgactatcgcgttggttgtttcaagcctgggaagtacaagatcgttttagattctgac 2293
|||||||| || ||||| |||| ||||||||||||||||||| | | ||||| |||||
Sbjct: 502 tttgactaccgtgttgggtgttccaagcctgggaagtacaaggtggccttagactctgat 561
Query: 2294 gatggccttttcggtggatttagtcggcttgatcatgacgctgagtacttcactgctgac 2353
|||| || || |||||||| || ||||||||||||| | || |||||||| | ||
Sbjct: 562 gatgcactctttggtggattcagcaggcttgatcatgatgtcgactacttcacaaccgaa 621
Query: 2354 tggccgcatgacaacaggccgtgttctttctcggtctatgcacccagcagaacagccgtc 2413
||||||||||||||||| | ||||||||||| || | || |||||||| || |||
Sbjct: 622 catccgcatgacaacaggccacgctctttctcggtgtacactccgagcagaactgcggtc 681
Query: 2414 gtatatgc 2421
|| |||||
Sbjct: 682 gtgtatgc 689
>gb|AV913706.1|AV913706 AV913706 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23a09 5', mRNA sequence
Length = 556
Score = 601 bits (303), Expect = e-170
Identities = 480/539 (89%)
Strand = Plus / Plus
Query: 437 cttgactaccgatacagtgaatataagagattacgtgcggctattgatcaacatgaaggt 496
||||||||||||||||| ||||| |||||| | ||||| |||||||| ||||||||||||
Sbjct: 16 cttgactaccgatacagcgaatacaagagaattcgtgctgctattgaccaacatgaaggt 75
Query: 497 ggtttggatgcattttcacgcggttacgaaaagcttggatttactcgcagcgctgaaggt 556
|| ||||| | ||||| || ||||| ||||||||||||||||| ||||| ||| |||||
Sbjct: 76 ggattggaagttttttctcgtggttatgaaaagcttggatttacccgcagtgctaaaggt 135
Query: 557 atcacttacagagaatgggctcctggagcatactctgcagcattagtaggtgacttcaac 616
||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 136 atcacttaccgagaatgggctcctggagcgcattctgcagcattagtaggtgacttcaac 195
Query: 617 aactggaacccaaatgctgatgctatggccagaaatgagtacggcgtttgggagattttc 676
|| |||||||||||||| ||| ||||| ||||| |||| || || |||||||||||||||
Sbjct: 196 aattggaacccaaatgcagatactatgaccagagatgattatggtgtttgggagattttc 255
Query: 677 ctgcctaacaatgctgatggttcccctgctattcctcatggctcacgtgtaaagatacgg 736
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctccctaacaatgctgatggatcccctgctattcctcatggctcacgtgtaaagatacgg 315
Query: 737 atggacacaccatctggtgttaaggattccattcctgcctggatcaagttttctgtgcag 796
||||| || ||||||||||| |||||||| ||| |||| ||||||||||| |||||||||
Sbjct: 316 atggatactccatctggtgtgaaggattcaatttctgcttggatcaagttctctgtgcag 375
Query: 797 gctccaggtgaaataccatacaacggtatatattatgacccacctgaagaggagaaatat 856
||||||||||||||||||| ||| || ||||||||||| ||||||||||||||||| |||
Sbjct: 376 gctccaggtgaaataccattcaatggcatatattatgatccacctgaagaggagaagtat 435
Query: 857 gtattcaaacaccctcaacctaagcggcccaagtcactgcggatatatgaatcacatgtt 916
|| ||| |||| ||||||||||| || || ||||||| |||||||||||||||| ||
Sbjct: 436 gtcttccaacatcctcaacctaaacgaccagagtcactaaggatatatgaatcacacatt 495
Query: 917 ggaatgagtagcccggaaccaaagataaatacatatgctaacttcagagatgaggtgct 975
|||||||| ||||||||||| ||||||||| |||||||||| || || |||||||||||
Sbjct: 496 ggaatgagcagcccggaaccgaagataaattcatatgctaattttagggatgaggtgct 554
>gb|BU972445.1|BU972445 HB21K16r BC Hordeum vulgare subsp. vulgare cDNA clone HB21K16
5-PRIME, mRNA sequence
Length = 476
Score = 599 bits (302), Expect = e-169
Identities = 416/454 (91%)
Strand = Plus / Plus
Query: 1124 gataaagcgcatgagcttggcttgctagtgcttatggatattgttcatagtcattcatca 1183
|||| ||| ||||||||||| ||||| || |||||||||||||||||||||||||| |||
Sbjct: 20 gatagagcacatgagcttggtttgcttgttcttatggatattgttcatagtcattcgtca 79
Query: 1184 aataataccttggatggtttgaatggtttcgatggcaccgatacacattacttccatggt 1243
||||||||| | || ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 80 aataatacccttgacggtttgaatggtttcgatggcactgatacacattacttccacggt 139
Query: 1244 ggtccacgaggccatcattggatgtgggattctcgcctattcaattatgggagttgggaa 1303
|||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 140 ggtccacgtggccatcattggatgtgggattctcgtctgttcaactatgggagttgggaa 199
Query: 1304 gttttgagatttctattgtcaaatgcgagatggtggcttgaagaatataaatttgatggg 1363
|| || ||||| || ||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 200 gtattaagattcttactgtcaaacgcgagatggtggcttgaagaatataagtttgatgga 259
Query: 1364 tttcgatttgatggggtgacctccatgatgtatactcaccatggattacaagtgacattc 1423
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 260 tttcgatttgatggggtgacttccatgatgtatactcaccatggattacaaatgacattt 319
Query: 1424 actgggaactatggcgagtattttggatttgccactgatgttgatgcagtagtttaccta 1483
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| ||
Sbjct: 320 actgggaactatggcgagtattttggattcgccactgatgttgatgcggtggtttactta 379
Query: 1484 atgctggtaaacgatcttattcgtgggctttatccagaagctgtatccattggcgaagat 1543
|||||||| |||||||| |||| ||| |||||||| || |||||||||||||| ||||||
Sbjct: 380 atgctggtcaacgatctaattcatggactttatccggatgctgtatccattggtgaagat 439
Query: 1544 gtcagcggaatgcctacattttgtatccctgtcc 1577
||||||||||||||||||||||| ||||||||||
Sbjct: 440 gtcagcggaatgcctacattttgcatccctgtcc 473
>gb|AV914376.1|AV914376 AV914376 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags5o11 5', mRNA sequence
Length = 471
Score = 563 bits (284), Expect = e-158
Identities = 424/471 (90%)
Strand = Plus / Plus
Query: 1692 taacaaatagaaggtggcttgaaaagtgtgtcacttattgtgaaagtcatgatcaagctc 1751
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
Sbjct: 1 taacaaatagaaggtggcttgagaagtgtgtcacttatgcagaaagtcatgatcaagcac 60
Query: 1752 ttgttggtgacaagacaattgcattctggttgatggataaggatatgtatgatttcatgg 1811
| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tagntggtgacaagactattgcattctggttgatggataaggatatgtatgatttcatgg 120
Query: 1812 ctctggacaggccttcaacgcctcgcatcgatcgtgggatagcattacataaaatgatta 1871
||||||| || |||||||| |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 121 ctctggatagaccttcaacccctcgcattgatcgtggcatagcattacataaaatgatca 180
Query: 1872 ggcttgtcacaatgggtttaggaggtgaaggctatctaaatttcatgggaaatgagtttg 1931
|||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 181 ggcttgtcaccatgggtttaggtggcgaaggctatcttaatttcatgggaaatgagtttg 240
Query: 1932 ggcatcctgaatggatagattttccaagaggtcctcaaagtcttccaaatggctccgtca 1991
|||||||||||||||||||||||||||||||||| |||| |||||||| ||| ||
Sbjct: 241 ggcatcctgaatggatagattttccaagaggtccgcaaactcttccaaccggcaaagttc 300
Query: 1992 ttcctgggaataacaatagctttgataaatgccgccgtagatttgaccttggagatgcag 2051
| ||||| ||||||||||| | |||||||||||||||||||||||| |||||||||||||
Sbjct: 301 tccctggaaataacaatagttatgataaatgccgccgtagatttgatcttggagatgcag 360
Query: 2052 attatcttagatatcgtggtatgcaagagtttgaccaggcaatgcagcaccttgagggaa 2111
||| ||||||||||||||||||||||||||| || |||||||||||||| ||||||| ||
Sbjct: 361 attttcttagatatcgtggtatgcaagagttcgatcaggcaatgcagcatcttgaggaaa 420
Query: 2112 aatatgaattcatgacatctgatcactcatatgtatcacggaagcatgagg 2162
|||||| || ||||||||||| ||| ||||| || ||||| |||||||
Sbjct: 421 aatatgggtttatgacatctgagcaccagtatgtttctcggaaacatgagg 471
>gb|BU996927.1|BU996927 HI06F01r HI Hordeum vulgare subsp. vulgare cDNA clone HI06F01
5-PRIME, mRNA sequence
Length = 517
Score = 551 bits (278), Expect = e-155
Identities = 440/494 (89%)
Strand = Plus / Plus
Query: 437 cttgactaccgatacagtgaatataagagattacgtgcggctattgatcaacatgaaggt 496
||||||||||||||||| ||||| |||||| | ||||| |||||||| ||||||||||||
Sbjct: 24 cttgactaccgatacagcgaatacaagagaattcgtgctgctattgaccaacatgaaggt 83
Query: 497 ggtttggatgcattttcacgcggttacgaaaagcttggatttactcgcagcgctgaaggt 556
|| ||||| | ||||| || ||||| ||||||||||||||||| ||||| ||| |||||
Sbjct: 84 ggattggaagttttttctcgtggttatgaaaagcttggatttacccgcagtgctaaaggt 143
Query: 557 atcacttacagagaatgggctcctggagcatactctgcagcattagtaggtgacttcaac 616
||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 144 atcacttaccgagaatgggctcctggagcgcattctgcagcattagtaggtgacttcaac 203
Query: 617 aactggaacccaaatgctgatgctatggccagaaatgagtacggcgtttgggagattttc 676
|| |||||||||||||| ||| ||||| ||||| |||| || || |||||||||||||||
Sbjct: 204 aattggaacccaaatgcagatactatgaccagagatgattatggtgtttgggagattttc 263
Query: 677 ctgcctaacaatgctgatggttcccctgctattcctcatggctcacgtgtaaagatacgg 736
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctccctaacaatgctgatggatcccctgctattcctcatggctcacgtgtaaagatacgg 323
Query: 737 atggacacaccatctggtgttaaggattccattcctgcctggatcaagttttctgtgcag 796
||||| || ||||||||||| |||||||| ||| |||| ||||||||||| |||||||||
Sbjct: 324 atggatactccatctggtgtgaaggattcaatttctgcttggatcaagttctctgtgcag 383
Query: 797 gctccaggtgaaataccatacaacggtatatattatgacccacctgaagaggagaaatat 856
||||||||||||||||||| ||| || ||||||||||| ||||||||||||||||| |||
Sbjct: 384 gctccaggtgaaataccattcaatggcatatattatgatccacctgaagaggagaagtat 443
Query: 857 gtattcaaacaccctcaacctaagcggcccaagtcactgcggatatatgaatcacatgtt 916
|| ||| |||| ||||||||||| || || ||||||| |||||||||||||||| ||
Sbjct: 444 gtcttccaacatcctcaacctaaacgaccagagtcactaaggatatatgaatcacacatt 503
Query: 917 ggaatgagtagccc 930
|||||||| |||||
Sbjct: 504 ggaatgagcagccc 517
>gb|BU967173.1|BU967173 HB03H24r BC Hordeum vulgare subsp. vulgare cDNA clone HB03H24
5-PRIME, mRNA sequence
Length = 625
Score = 496 bits (250), Expect = e-138
Identities = 495/579 (85%)
Strand = Plus / Plus
Query: 663 tttgggagattttcctgcctaacaatgctgatggttcccctgctattcctcatggctcac 722
||||||||||||| ||||| |||||||| |||||||| || | ||||||||||||||||
Sbjct: 47 tttgggagatttttctgccaaacaatgcagatggttcgccgccaattcctcatggctcac 106
Query: 723 gtgtaaagatacggatggacacaccatctggtgttaaggattccattcctgcctggatca 782
| || ||| | |||||||| || |||||||| |||||||| |||||||| |||||||
Sbjct: 107 gggtgaaggtgcggatggatactccatctgggacaaaggattcaattcctgcttggatca 166
Query: 783 agttttctgtgcaggctccaggtgaaataccatacaacggtatatattatgacccacctg 842
||| || |||||| ||||||| || ||||||||||| || |||||||||||||| ||||
Sbjct: 167 agtactccgtgcagactccaggagatataccatacaatggaatatattatgaccctcctg 226
Query: 843 aagaggagaaatatgtattcaaacaccctcaacctaagcggcccaagtcactgcggatat 902
|||||||||| ||||||||||| || ||||||||||| || || || ||| |||||||||
Sbjct: 227 aagaggagaagtatgtattcaagcatcctcaacctaaacgaccaaaatcattgcggatat 286
Query: 903 atgaatcacatgttggaatgagtagcccggaaccaaagataaatacatatgctaacttca 962
||||| |||||||||| ||||||||||||||||||||||| || |||||||| |||||||
Sbjct: 287 atgaaacacatgttggcatgagtagcccggaaccaaagatcaacacatatgcaaacttca 346
Query: 963 gagatgaggtgcttccaagaattaaaaagcttggatacaatgcagtacagataatggcaa 1022
||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct: 347 gagatgaggtgcttccaagaattaaaagacttggatacaatgcagttcaaataatggcaa 406
Query: 1023 tccaggaacactcttattatgcaagctttgggtaccatgttacgaannnnnnngccccaa 1082
|||| || || || || |||| ||||||||||||||||||||| || || ||||
Sbjct: 407 tccaagagcattcatactatggaagctttgggtaccatgttaccaatttctttgcaccaa 466
Query: 1083 gtagccgttttgggactccagaggacctaaaatctcttattgataaagcgcatgagcttg 1142
|||||||||||||| | ||||| || ||||||| | ||||||| ||| || |||||||
Sbjct: 467 gtagccgttttgggtccccagaagatttaaaatccttgattgatagagctcacgagcttg 526
Query: 1143 gcttgctagtgcttatggatattgttcatagtcattcatcaaataataccttggatggtt 1202
| ||||| || || |||||| ||||||| ||||| |||||| |||||||||||| ||||
Sbjct: 527 gtttgcttgtcctgatggatgttgttcacagtcacgcatcaagtaataccttggacggtt 586
Query: 1203 tgaatggtttcgatggcaccgatacacattacttccatg 1241
|||||||||| |||||||| |||||||||||||| ||||
Sbjct: 587 tgaatggttttgatggcacggatacacattactttcatg 625
>gb|BU970967.1|BU970967 HB16D15r BC Hordeum vulgare subsp. vulgare cDNA clone HB16D15
5-PRIME, mRNA sequence
Length = 411
Score = 496 bits (250), Expect = e-138
Identities = 352/386 (91%)
Strand = Plus / Plus
Query: 1289 tatgggagttgggaagttttgagatttctattgtcaaatgcgagatggtggcttgaagaa 1348
||||||||||||||||| || ||||| || ||||||| |||||||||||||||||||||
Sbjct: 24 tatgggagttgggaagtattaagattcttactgtcaaacgcgagatggtggcttgaagaa 83
Query: 1349 tataaatttgatgggtttcgatttgatggggtgacctccatgatgtatactcaccatgga 1408
||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 84 tataagtttgatggatttcgatttgatggggtgacttccatgatgtatactcaccatgga 143
Query: 1409 ttacaagtgacattcactgggaactatggcgagtattttggatttgccactgatgttgat 1468
|||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 144 ttacaaatgacatttactgggaactatggcgagtattttggattcgccactgatgttgat 203
Query: 1469 gcagtagtttacctaatgctggtaaacgatcttattcgtgggctttatccagaagctgta 1528
|| || |||||| |||||||||| |||||||| |||| ||| |||||||| || ||||||
Sbjct: 204 gcggtggtttacttaatgctggtcaacgatctaattcatggactttatccggatgctgta 263
Query: 1529 tccattggcgaagatgtcagcggaatgcctacattttgtatccctgtccaagatggtggt 1588
|||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 264 tccattggtgaagatgtcagcggaatgcctacattttgcatccctgtcccagatggtggt 323
Query: 1589 gttggttttgattatcgtcttcatatggctgtcccagacaaatggattgaacttctgaag 1648
||||||||||| ||||| || ||||||||||| |||| |||||||||||||| || |||
Sbjct: 324 gttggttttgactatcgcctgcatatggctgtagcagataaatggattgaactcctcaag 383
Query: 1649 caaagtgacgaatattgggaaatggg 1674
||||||||||||| |||| |||||||
Sbjct: 384 caaagtgacgaatcttggaaaatggg 409
>gb|BM443964.2|BM443964 EBem09_SQ002_F04_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ002_F04 5', mRNA sequence
Length = 388
Score = 452 bits (228), Expect = e-125
Identities = 342/380 (90%)
Strand = Plus / Minus
Query: 479 attgatcaacatgaaggtggtttggatgcattttcacgcggttacgaaaagcttggattt 538
||||| |||||||||||||| ||||| | ||||| || ||||| |||||||||||||||
Sbjct: 388 attgaccaacatgaaggtggattggaagttttttctcgtggttatgaaaagcttggattt 329
Query: 539 actcgcagcgctgaaggtatcacttacagagaatgggctcctggagcatactctgcagca 598
|| ||||| ||| |||||||||||||| ||||||||||||||||||| | |||||||||
Sbjct: 328 acccgcagtgctaaaggtatcacttaccgagaatgggctcctggagcgcattctgcagca 269
Query: 599 ttagtaggtgacttcaacaactggaacccaaatgctgatgctatggccagaaatgagtac 658
|||||||||||||||||||| |||||||||||||| ||| ||||| ||||| |||| ||
Sbjct: 268 ttagtaggtgacttcaacaattggaacccaaatgcagatactatgaccagagatgattat 209
Query: 659 ggcgtttgggagattttcctgcctaacaatgctgatggttcccctgctattcctcatggc 718
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 208 ggtgtttgggagattttcctccctaacaatgctgatggatcccctgctattcctcatggc 149
Query: 719 tcacgtgtaaagatacggatggacacaccatctggtgttaaggattccattcctgcctgg 778
||||||||||||||||||||| | || ||||||||||| |||||||| ||| |||| |||
Sbjct: 148 tcacgtgtaaagatacggatgaatactccatctggtgtgaaggattcaatttctgcttgg 89
Query: 779 atcaagttttctgtgcaggctccaggtgaaataccatacaacggtatatattatgaccca 838
|||||||| |||||||||||||||||||||||||||| ||| || ||||||||||| |||
Sbjct: 88 atcaagttctctgtgcaggctccaggtgaaataccattcaatggcatatattatgatcca 29
Query: 839 cctgaagaggagaaatatgt 858
|||||||||||||| |||||
Sbjct: 28 cctgaagaggagaagtatgt 9
>gb|BM444013.2|BM444013 EBem09_SQ002_L12_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ002_L12 5', mRNA sequence
Length = 376
Score = 406 bits (205), Expect = e-111
Identities = 307/341 (90%)
Strand = Plus / Minus
Query: 518 ggttacgaaaagcttggatttactcgcagcgctgaaggtatcacttacagagaatgggct 577
||||| ||| ||||||||||||| ||||| ||| |||||||||||||| |||||||||||
Sbjct: 349 ggttatgaagagcttggatttacccgcagtgctaaaggtatcacttaccgagaatgggct 290
Query: 578 cctggagcatactctgcagcattagtaggtgacttcaacaactggaacccaaatgctgat 637
|||||||| | |||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 289 cctggagcgcattctgcagcattagtgggtgacttcaacaattggaacccaaatgcagat 230
Query: 638 gctatggccagaaatgagtacggcgtttgggagattttcctgcctaacaatgctgatggt 697
||||| ||||| |||| || || ||||||||||||||||| |||||||||||| |||
Sbjct: 229 actatgaccagagatgattatggtgtttgggagattttcctccctaacaatgctagtgga 170
Query: 698 tcccctgctattcctcatggctcacgtgtaaagatacggatggacacaccatctggtgtt 757
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 169 tcccctgctattcctcatggctcacgtgtaaagatacggatggatactccatctggtgtg 110
Query: 758 aaggattccattcctgcctggatcaagttttctgtgcaggctccaggtgaaataccatac 817
|||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 109 aaggattcaatttctgcttggatcaagttctctgtgcaggctccaggtgaaataccattc 50
Query: 818 aacggtatatattatgacccacctgaagaggagaaatatgt 858
|| || ||||||||||| ||||||||||||||||| |||||
Sbjct: 49 aatggcatatattatgatccacctgaagaggagaagtatgt 9
>gb|BE196055.1|BE196055 HVSMEh0091D22f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0091D22f, mRNA sequence
Length = 832
Score = 404 bits (204), Expect = e-111
Identities = 330/372 (88%)
Strand = Plus / Plus
Query: 1823 ccttcaacgcctcgcatcgatcgtgggatagcattacataaaatgattaggcttgtcaca 1882
|||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct: 11 ccttcaacccctcgcattgatcgtggcatagcattacataaaatgatcaggcttgtcacc 70
Query: 1883 atgggtttaggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaa 1942
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 71 atgggtttaggtggcgaaggctatcttaatttcatgggaaatgagtttgggcatcctgaa 130
Query: 1943 tggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcattcctgggaat 2002
||||||||||||||||| ||||| |||| |||||||| ||| || | ||||| |||
Sbjct: 131 tggatagattttccaaggggtccgcaaactcttccaaccggcaaagttctccctggcaat 190
Query: 2003 aacaatagctttgataaatgccgccgtagatttgaccttggagatgcagattatcttaga 2062
|||||||| | |||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 191 aacaatagttatgataaatgccgccgtagatttgatcttggagatgcagattttcttaga 250
Query: 2063 tatcgtggtatgcaagagtttgaccaggcaatgcagcaccttgagggaaaatatgaattc 2122
|||||||||||||||||||| || |||||||||||||| ||||||| |||||||| ||
Sbjct: 251 tatcgtggtatgcaagagttcgatcaggcaatgcagcatcttgaggaaaaatatgggttt 310
Query: 2123 atgacatctgatcactcatatgtatcacggaagcatgaggaggataaggtgatcatcttt 2182
||||||||||| ||| ||||| | ||||| |||||||| |||||||||||||||||
Sbjct: 311 atgacatctgagcaccagtatgttactcggaaacatgaggaagataaggtgatcatcttc 370
Query: 2183 gagagaggagat 2194
|| |||||||||
Sbjct: 371 gaaagaggagat 382
>gb|CV060106.1|CV060106 BNEL54e11 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL54e11 5' similar to probable
1,4-alpha-glucan branching enzyme, mRNA sequence
Length = 612
Score = 398 bits (201), Expect = e-109
Identities = 429/505 (84%)
Strand = Plus / Plus
Query: 1917 tgggaaatgagtttgggcatcctgaatggatagattttccaagaggtcctcaaagtcttc 1976
||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct: 1 tgggaaatgagtttgggcatcctgaatggatagattttccaaggggtccgcaaactcttc 60
Query: 1977 caaatggctccgtcattcctgggaataacaatagctttgataaatgccgccgtagatttg 2036
||| ||| || | ||||| ||||||||||| | |||||||||||||||||||||||
Sbjct: 61 caaccggcaaagttctccctggcaataacaatagttatgataaatgccgccgtagatttg 120
Query: 2037 accttggagatgcagattatcttagatatcgtggtatgcaagagtttgaccaggcaatgc 2096
| |||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||
Sbjct: 121 atcttggagatgcagattttcttagatatcgtggtatgcaagagttcgatcaggcaatgc 180
Query: 2097 agcaccttgagggaaaatatgaattcatgacatctgatcactcatatgtatcacggaagc 2156
|||| ||||||| |||||||| || ||||||||||| ||| ||||| || ||||| |
Sbjct: 181 agcatcttgaggaaaaatatgggtttatgacatctgagcaccagtatgtttctcggaaac 240
Query: 2157 atgaggaggataaggtgatcatctttgagagaggagatttggtcttcgtgttcaacttcc 2216
||||||| ||||||||||||||||| || |||||||||||||| || || ||||||||||
Sbjct: 241 atgaggaagataaggtgatcatcttcgaaagaggagatttggtatttgttttcaacttcc 300
Query: 2217 actggagcaatagctattttgactatcgcgttggttgtttcaagcctgggaagtacaaga 2276
||||||||||||||| ||||||||| || ||||| |||| |||||||||||||||||||
Sbjct: 301 actggagcaatagcttttttgactaccgtgttgggtgttccaagcctgggaagtacaagg 360
Query: 2277 tcgttttagattctgacgatggccttttcggtggatttagtcggcttgatcatgacgctg 2336
| | ||||| ||||| |||| || || |||||||| || ||||||||||||| | |
Sbjct: 361 tggccttagactctgatgatgcactctttggtggattcagcaggcttgatcatgatgtcg 420
Query: 2337 agtacttcactgctgactggccgcatgacaacaggccgtgttctttctcggtctatgcac 2396
| |||||||| | || ||||||||||||||||| | ||||||||||| || | |
Sbjct: 421 actacttcacaaccgaacatccgcatgacaacaggccacgctctttctcggtgtacactc 480
Query: 2397 ccagcagaacagccgtcgtatatgc 2421
| |||||||| || ||||| |||||
Sbjct: 481 cgagcagaactgcggtcgtgtatgc 505
>gb|CA030569.1|CA030569 HX07H03r HX Hordeum vulgare subsp. vulgare cDNA clone HX07H03
5-PRIME, mRNA sequence
Length = 647
Score = 391 bits (197), Expect = e-107
Identities = 429/505 (84%), Gaps = 1/505 (0%)
Strand = Plus / Plus
Query: 1917 tgggaaatgagtttgggcatcctgaatggatagattttccaagaggtcctcaaagtcttc 1976
||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||
Sbjct: 2 tgggaaatgagtttgggcatcctgaatggatagattttcca-gaggtccgcaaactcttc 60
Query: 1977 caaatggctccgtcattcctgggaataacaatagctttgataaatgccgccgtagatttg 2036
||| ||| || | ||||| ||||||||||| | |||||||||||||||||||||||
Sbjct: 61 caaccggcaaagttctccctggaaataacaatagttatgataaatgccgccgtagatttg 120
Query: 2037 accttggagatgcagattatcttagatatcgtggtatgcaagagtttgaccaggcaatgc 2096
| |||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||
Sbjct: 121 atcttggagatgcagattttcttagatatcgtggtatgcaagagttcgatcaggcaatgc 180
Query: 2097 agcaccttgagggaaaatatgaattcatgacatctgatcactcatatgtatcacggaagc 2156
|||| ||||||| |||||||| || ||||||||||| ||| ||||| || ||||| |
Sbjct: 181 agcatcttgaggaaaaatatgggtttatgacatctgagcaccagtatgtttctcggaaac 240
Query: 2157 atgaggaggataaggtgatcatctttgagagaggagatttggtcttcgtgttcaacttcc 2216
||||||| ||||||||||||||||| || |||||||||||||| || || ||||||||||
Sbjct: 241 atgaggaagataaggtgatcatcttcgaaagaggagatttggtatttgttttcaacttcc 300
Query: 2217 actggagcaatagctattttgactatcgcgttggttgtttcaagcctgggaagtacaaga 2276
||||||||||||||| ||||||||| || ||||| |||| |||||||||||||||||||
Sbjct: 301 actggagcaatagcttttttgactaccgtgttgggtgttccaagcctgggaagtacaagg 360
Query: 2277 tcgttttagattctgacgatggccttttcggtggatttagtcggcttgatcatgacgctg 2336
| | ||||| ||||| |||| || || |||||||| || ||||||||||||| | |
Sbjct: 361 tggccttagactctgatgatgcactctttggtggattcagcaggcttgatcatgatgtcg 420
Query: 2337 agtacttcactgctgactggccgcatgacaacaggccgtgttctttctcggtctatgcac 2396
| |||||||| | || ||||||||||||||||| | ||||||||||| || | |
Sbjct: 421 actacttcacaaccgaacatccgcatgacaacaggccacgctctttctcggtgtacactc 480
Query: 2397 ccagcagaacagccgtcgtatatgc 2421
| |||||||| || ||||| |||||
Sbjct: 481 cgagcagaactgcggtcgtgtatgc 505
>gb|BE196057.2|BE196057 HVSMEh0091D24f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0091D24f, mRNA sequence
Length = 918
Score = 383 bits (193), Expect = e-104
Identities = 328/373 (87%)
Strand = Plus / Plus
Query: 1823 ccttcaacgcctcgcatcgatcgtgggatagcattacataaaatgattaggcttgtcaca 1882
|||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct: 7 ccttcaacccctcgcattgatcgtggcatagcattacataaaatgatcaggcttgtcacc 66
Query: 1883 atgggtttaggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaa 1942
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 67 atgggtttaggtggcgaaggctatcttaatttcatgggaaatgagtttgggcatcctgaa 126
Query: 1943 tggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcattcctgggaat 2002
||||||||||||||||| ||||| |||| |||||||| ||| || | ||||| |||
Sbjct: 127 tggatagattttccaaggggtccgcaaactcttccaaccggcaaagttctccctggcaat 186
Query: 2003 aacaatagctttgataaatgccgccgtagatttgaccttggagatgcagattatcttaga 2062
|||||||| | ||||||||||||||||| |||||| |||||||||||||||| ||||| |
Sbjct: 187 aacaatagttatgataaatgccgccgtaaatttgatcttggagatgcagattttcttaaa 246
Query: 2063 tatcgtggtatgcaagagtttgaccaggcaatgcagcaccttgagggaaaatatgaattc 2122
|||||||||||||||||||| | |||||||||||||| ||||||| |||||||| ||
Sbjct: 247 tatcgtggtatgcaagagttctatcaggcaatgcagcatcttgaggaaaaatatgggttt 306
Query: 2123 atgacatctgatcactcatatgtatcacggaagcatgaggaggataaggtgatcatcttt 2182
||||||||||| ||| |||||| | ||||| |||||||| |||||||||||||| ||
Sbjct: 307 atgacatctgagcaccaatatgttcctcggaaacatgaggaagataaggtgatcatattc 366
Query: 2183 gagagaggagatt 2195
|| ||||||||||
Sbjct: 367 gaaagaggagatt 379
>gb|BI948738.1|BI948738 HVSMEl0010K17f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0010K17f, mRNA sequence
Length = 820
Score = 363 bits (183), Expect = 2e-098
Identities = 343/395 (86%), Gaps = 1/395 (0%)
Strand = Plus / Plus
Query: 1493 aacgatcttattcgtgggctttatccagaagctgtatccattggcgaagatgtcagcgga 1552
|||||||| |||| ||| |||||||| || |||||||||||||| |||||||||||||||
Sbjct: 1 aacgatctaattcatggactttatccggatgctgtatccattggtgaagatgtcagcgga 60
Query: 1553 atgcctacattttgtatccctgtccaagatggtggtgttggttttgattatcgtcttcat 1612
|||||||||||||| |||||||||| ||||||||||||||||||||| ||||| || |||
Sbjct: 61 atgcctacattttgcatccctgtcccagatggtggtgttggttttgactatcgcctgcat 120
Query: 1613 atggctgtcccagacaaatggattgaacttctgaagcaaagtgacgaatattgggaaatg 1672
|||||||| |||| |||||||||||||| || |||||||||| || | |||| |||||
Sbjct: 121 atggctgtagcagataaatggattgaactcctcaagcaaagtggggagtcttggaaaatg 180
Query: 1673 ggtgacatcgtgcacaccttaacaaatagaaggtggcttgaaaagtgtgtcacttattgt 1732
|| || || ||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 181 ggcgatattgtgcacaccctaacaaatagaaggtggcttgagaagtgtgtcacttatgca 240
Query: 1733 gaaagtcatgatcaagctcttgttggtgacaagacaattgcattctggttgatggataag 1792
||||||||||||||| | || |||||||||||||| ||||||||||||||||||||||||
Sbjct: 241 gaaagtcatgatcaatcactagttggtgacaagactattgcattctggttgatggataag 300
Query: 1793 gatatgtatgatttcatggctctggacaggccttcaacgcctcgcatcgat-cgtgggat 1851
||||||| | | | ||| |||||||| | ||||| || ||| |||| ||| ||||| ||
Sbjct: 301 gatatgtctcaatccatagctctggataaaccttccaccccttgcattgatacgtggcat 360
Query: 1852 agcattacataaaatgattaggcttgtcacaatgg 1886
||||| |||||| ||||| ||||| ||||| ||||
Sbjct: 361 agcatcacataagatgatcaggctcgtcaccatgg 395
>gb|BG366889.2|BG366889 HVSMEi0008N13f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0008N13f, mRNA sequence
Length = 506
Score = 343 bits (173), Expect = 2e-092
Identities = 337/392 (85%)
Strand = Plus / Plus
Query: 1940 gaatggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcattcctggg 1999
|||||||||||||||||||| ||||| |||| |||||||| ||| || | |||||
Sbjct: 1 gaatggatagattttccaaggggtccgcaaactcttccaaccggcaaagttctccctggc 60
Query: 2000 aataacaatagctttgataaatgccgccgtagatttgaccttggagatgcagattatctt 2059
||||||||||| | |||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 61 aataacaatagttatgataaatgccgccgtagatttgatcttggagatgcagattttctt 120
Query: 2060 agatatcgtggtatgcaagagtttgaccaggcaatgcagcaccttgagggaaaatatgaa 2119
||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||||
Sbjct: 121 agatatcgtggtatgcaagagttcgatcaggcaatgcagcatcttgaggaaaaatatggg 180
Query: 2120 ttcatgacatctgatcactcatatgtatcacggaagcatgaggaggataaggtgatcatc 2179
|| ||||||||||| ||| ||||| || ||||| |||||||| |||||||||||||||
Sbjct: 181 tttatgacatctgagcaccagtatgtttctcggaaacatgaggaagataaggtgatcatc 240
Query: 2180 tttgagagaggagatttggtcttcgtgttcaacttccactggagcaatagctattttgac 2239
|| || ||||||||| |||| || || ||||||||||||||||||||||||| |||||||
Sbjct: 241 ttcgaaagaggagatntggtatttgttttcaacttccactggagcaatagcttttttgac 300
Query: 2240 tatcgcgttggttgtttcaagcctgggaagtacaagatcgttttagattctgacgatggc 2299
|| || ||||| |||| ||||||||||||||||||| | | ||||| ||||| ||||
Sbjct: 301 taccgtgttgggtgttccaagcctgggaagtacaaggtggccttagactctgatgatgca 360
Query: 2300 cttttcggtggatttagtcggcttgatcatga 2331
|| || |||||||| || |||||||||||||
Sbjct: 361 ctctttggtggattcagcaggcttgatcatga 392
>gb|BE602527.2|BE602527 HVSMEh0099J22f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0099J22f, mRNA sequence
Length = 731
Score = 337 bits (170), Expect = 1e-090
Identities = 431/519 (83%)
Strand = Plus / Plus
Query: 1442 tattttggatttgccactgatgttgatgcagtagtttacctaatgctggtaaacgatctt 1501
|||||||| |||||||| ||||| |||||||| |||||| | |||||||| || |||||
Sbjct: 213 tattttggctttgccacggatgtagatgcagttgtttacttgatgctggtgaatgatcta 272
Query: 1502 attcgtgggctttatccagaagctgtatccattggcgaagatgtcagcggaatgcctaca 1561
|||| | ||| ||||| ||||| || | ||||| |||||||| || ||||||||||||
Sbjct: 273 attcacgcgctntatcctgaagccgttactattggtgaagatgttagtggaatgcctaca 332
Query: 1562 ttttgtatccctgtccaagatggtggtgttggttttgattatcgtcttcatatggctgtc 1621
||| | ||||| |||| |||||| ||||||||||| ||||| | |||||||| ||
Sbjct: 333 tttgcccttcctgttcaagttggtggggttggttttgactatcgcttacatatggccgtt 392
Query: 1622 ccagacaaatggattgaacttctgaagcaaagtgacgaatattgggaaatgggtgacatc 1681
| || ||||||||||||||||| || ||| || ||| |||||| |||||| | ||
Sbjct: 393 gccgataaatggattgaacttctcaaaggaagcgatgaaggttgggagatgggtaatatt 452
Query: 1682 gtgcacaccttaacaaatagaaggtggcttgaaaagtgtgtcacttattgtgaaagtcat 1741
|||||||| ||||||||||||||||| | ||||||||||| |||||| ||||||||||
Sbjct: 453 gtgcacacactaacaaatagaaggtggttggaaaagtgtgttacttatgctgaaagtcat 512
Query: 1742 gatcaagctcttgttggtgacaagacaattgcattctggttgatggataaggatatgtat 1801
|||||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 513 gatcaagcacttgttggagacaagactattgcattctggttgatggacaaggatatgtat 572
Query: 1802 gatttcatggctctggacaggccttcaacgcctcgcatcgatcgtgggatagcattacat 1861
||||||||||||||| || | ||||| || ||| || ||||| || |||||| | |||
Sbjct: 573 gatttcatggctctgaacggaccttcgacacctaatattgatcgcggaatagcactgcat 632
Query: 1862 aaaatgattaggcttgtcacaatgggtttaggaggtgaaggctatctaaatttcatggga 1921
||||||||||| ||| ||||||||| | ||||||| || || ||||| || || ||||||
Sbjct: 633 aaaatgattagacttatcacaatggctntaggaggagagggttatcttaactttatggga 692
Query: 1922 aatgagtttgggcatcctgaatggatagattttccaaga 1960
|||||||| ||||||||||||||||||| | |||||||
Sbjct: 693 aatgagttccggcatcctgaatggatagactntccaaga 731
Score = 73.8 bits (37), Expect = 3e-011
Identities = 136/169 (80%)
Strand = Plus / Plus
Query: 1248 cacgaggccatcattggatgtgggattctcgcctattcaattatgggagttgggaagttt 1307
|||| |||||||| ||||||||||||||||| | ||||| || |||| | |||||||
Sbjct: 21 cacggggccatcactggatgtgggattctcgtgtgttcaactacgggaataaggaagtta 80
Query: 1308 tgagatttctattgtcaaatgcgagatggtggcttgaagaatataaatttgatgggtttc 1367
| || ||||| | || ||||| |||||| ||||||| |||||||| || ||||||| |
Sbjct: 81 taagggttctactttccaatgccagatgggggcttgaggaatataagttccatgggttcc 140
Query: 1368 gatttgatggggtgacctccatgatgtatactcaccatggattacaagt 1416
||| || ||| |||| |||||||||||| | |||||||||||||||
Sbjct: 141 cattcgacgggcccaccttcatgatgtataccccccatggattacaagt 189
>gb|BQ755138.1|BQ755138 EBed02_SQ003_N09_R endosperm, 8 DPA, no treatment, cv Optic, EBed02
Hordeum vulgare subsp. vulgare cDNA clone
EBed02_SQ003_N09 5', mRNA sequence
Length = 658
Score = 333 bits (168), Expect = 2e-089
Identities = 363/428 (84%)
Strand = Plus / Plus
Query: 1994 cctgggaataacaatagctttgataaatgccgccgtagatttgaccttggagatgcagat 2053
||||| ||||||||||| | |||||||||||||||||||||||| |||||||||||||||
Sbjct: 19 cctggaaataacaatagttatgataaatgccgccgtagatttgatcttggagatgcagat 78
Query: 2054 tatcttagatatcgtggtatgcaagagtttgaccaggcaatgcagcaccttgagggaaaa 2113
| ||||||||||||||||||||||||||| || |||||||||||||| ||||||| ||||
Sbjct: 79 tttcttagatatcgtggtatgcaagagttcgatcaggcaatgcagcatcttgaggaaaaa 138
Query: 2114 tatgaattcatgacatctgatcactcatatgtatcacggaagcatgaggaggataaggtg 2173
|||| || ||||||||||| ||| ||||| || ||||| |||||||| |||||||||
Sbjct: 139 tatgggtttatgacatctgagcaccagtatgtttctcggaaacatgaggaagataaggtg 198
Query: 2174 atcatctttgagagaggagatttggtcttcgtgttcaacttccactggagcaatagctat 2233
|||||||| || |||||||||||||| || || ||||||||||||||||||||||||| |
Sbjct: 199 atcatcttcgaaagaggagatttggtatttgttttcaacttccactggagcaatagcttt 258
Query: 2234 tttgactatcgcgttggttgtttcaagcctgggaagtacaagatcgttttagattctgac 2293
|||||||| || ||||| |||| ||||||||||||||||||| | | ||||| |||||
Sbjct: 259 tttgactaccgtgttgggtgttccaagcctgggaagtacaaggtggccttagactctgat 318
Query: 2294 gatggccttttcggtggatttagtcggcttgatcatgacgctgagtacttcactgctgac 2353
|||| || || |||||||| || ||||||||||||| | || |||||||| | ||
Sbjct: 319 gatgcactctttggtggattcagcaggcttgatcatgatgtcgactacttcacaaccgaa 378
Query: 2354 tggccgcatgacaacaggccgtgttctttctcggtctatgcacccagcagaacagccgtc 2413
||||||||||||||||| | ||||||||||| || | || |||||||| || |||
Sbjct: 379 catccgcatgacaacaggccacgctctttctcggtgtacactccgagcagaactgcggtc 438
Query: 2414 gtatatgc 2421
|| |||||
Sbjct: 439 gtgtatgc 446
>gb|AV921312.1|AV921312 AV921312 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23a09 3', mRNA sequence
Length = 692
Score = 311 bits (157), Expect = 7e-083
Identities = 345/408 (84%)
Strand = Plus / Minus
Query: 2014 tgataaatgccgccgtagatttgaccttggagatgcagattatcttagatatcgtggtat 2073
|||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||
Sbjct: 685 tgataaatgccgccgtagatttgatcttgnagatgcagattttcttagatatcgtggtat 626
Query: 2074 gcaagagtttgaccaggcaatgcagcaccttgagggaaaatatgaattcatgacatctga 2133
||||||||| || |||||||||||||| ||||||| |||||||| || |||||||||||
Sbjct: 625 gcaagagttcgatcaggcaatgcagcatcttgaggaaaaatatgggtttatgacatctga 566
Query: 2134 tcactcatatgtatcacggaagcatgaggaggataaggtgatcatctttgagagaggaga 2193
||| ||||| || ||||| |||||||| ||||||||||||||||| || ||||||||
Sbjct: 565 gcaccagtatgtttctcggaaacatgaggaagataaggtgatcatcttcgaaagaggaga 506
Query: 2194 tttggtcttcgtgttcaacttccactggagcaatagctattttgactatcgcgttggttg 2253
|||||| || || ||||||||||||||||||||||||| ||||||||| || ||||| ||
Sbjct: 505 tttggtatttgttttcaacttccactggagcaatagcttttttgactaccgtgttgggtg 446
Query: 2254 tttcaagcctgggaagtacaagatcgttttagattctgacgatggccttttcggtggatt 2313
|| ||||||||||||||||||| | | ||||| ||||| |||| || || ||||||||
Sbjct: 445 ttccaagcctgggaagtacaaggtggccttagactctgatgatgcactctttggtggatt 386
Query: 2314 tagtcggcttgatcatgacgctgagtacttcactgctgactggccgcatgacaacaggcc 2373
|| ||||||||||||| | || |||||||| | || |||||||||||||||||
Sbjct: 385 cagcaggcttgatcatgatgtcgactacttcacaaccgaacatccgcatgacaacaggcc 326
Query: 2374 gtgttctttctcggtctatgcacccagcagaacagccgtcgtatatgc 2421
| ||||||||||| || | || |||||||| || ||||| |||||
Sbjct: 325 acgctctttctcggtgtacactccgagcagaactgcggtcgtgtatgc 278
>gb|CV060003.1|CV060003 BNEL53d1 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL53d1 5' similar to probable
1,4-alpha-glucan branching enzyme, mRNA sequence
Length = 587
Score = 303 bits (153), Expect = 2e-080
Identities = 261/297 (87%)
Strand = Plus / Plus
Query: 1917 tgggaaatgagtttgggcatcctgaatggatagattttccaagaggtcctcaaagtcttc 1976
||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct: 1 tgggaaatgagtttgggcatcctgaatggatagattttccaaggggtccgcaaactcttc 60
Query: 1977 caaatggctccgtcattcctgggaataacaatagctttgataaatgccgccgtagatttg 2036
||| ||| || | ||||| ||||||||||| | |||||||||||||||||||||||
Sbjct: 61 caaccggcaaagttctccctggcaataacaatagttatgataaatgccgccgtagatttg 120
Query: 2037 accttggagatgcagattatcttagatatcgtggtatgcaagagtttgaccaggcaatgc 2096
| |||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||
Sbjct: 121 atcttggagatgcagattttcttagatatcgtggtatgcaagagttcgatcaggcaatgc 180
Query: 2097 agcaccttgagggaaaatatgaattcatgacatctgatcactcatatgtatcacggaagc 2156
|||| ||||||| |||||||| || ||||||||||| ||| ||||| || ||||| |
Sbjct: 181 agcatcttgaggaaaaatatgggtttatgacatctgagcaccagtatgtttctcggaaac 240
Query: 2157 atgaggaggataaggtgatcatctttgagagaggagatttggtcttcgtgttcaact 2213
||||||| ||||||||||||||||| || |||||||||||||| || || |||||||
Sbjct: 241 atgaggaagataaggtgatcatcttcgaaagaggagatttggtatttgttttcaact 297
>gb|CA029212.1|CA029212 HZ64I18r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64I18
5-PRIME, mRNA sequence
Length = 412
Score = 268 bits (135), Expect = 9e-070
Identities = 261/303 (86%)
Strand = Plus / Plus
Query: 352 ggagaaaccacgagttatcccaccaccaggagatggccaacgaatatatgagattgaccc 411
||||||||| | |||| ||||| |||||||||||| ||| |||||| |||||||||||
Sbjct: 102 ggagaaaccgcaagttgtcccaaaaccaggagatgggcaaaaaatatacgagattgaccc 161
Query: 412 aatgttggaagggtttcggggtcaccttgactaccgatacagtgaatataagagattacg 471
|| | || ||| |||||| | || ||||||||||||||||| ||||| |||||| | ||
Sbjct: 162 aacgctgaaagattttcggagccatcttgactaccgatacagcgaatacaagagaattcg 221
Query: 472 tgcggctattgatcaacatgaaggtggtttggatgcattttcacgcggttacgaaaagct 531
||| |||||||| |||||||||||||| ||||| | ||||| || ||||| ||||||||
Sbjct: 222 tgctgctattgaccaacatgaaggtggattggaagttttttctcgtggttatgaaaagct 281
Query: 532 tggatttactcgcagcgctgaaggtatcacttacagagaatgggctcctggagcatactc 591
||||||||| ||||| ||| |||||||||||||| ||||||||||||||||||| | ||
Sbjct: 282 tggatttacccgcagtgctaaaggtatcacttaccgagaatgggctcctggagcgcattc 341
Query: 592 tgcagcattagtaggtgacttcaacaactggaacccaaatgctgatgctatggccagaaa 651
||||||||||||||||||||||||||| |||||||||||||| ||| ||||| ||||| |
Sbjct: 342 tgcagcattagtaggtgacttcaacaattggaacccaaatgcagatactatgaccagaga 401
Query: 652 tga 654
|||
Sbjct: 402 tga 404
>gb|CV060196.1|CV060196 BNEL55e10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL55e10 5' similar to starch
branching enzyme IIa, mRNA sequence
Length = 535
Score = 254 bits (128), Expect = 1e-065
Identities = 261/304 (85%), Gaps = 1/304 (0%)
Strand = Plus / Plus
Query: 352 ggagaaaccacgagttatcccaccaccaggagatggccaacgaa-tatatgagattgacc 410
||||||||| | |||| ||||| |||||||||||| ||| || |||| ||||||||||
Sbjct: 225 ggagaaaccgcaagttgtcccaaaaccaggagatgggcaaaaaaatatacgagattgacc 284
Query: 411 caatgttggaagggtttcggggtcaccttgactaccgatacagtgaatataagagattac 470
||| | || ||| |||||| | || ||||||||||||||||| ||||| |||||| | |
Sbjct: 285 caacgctgaaagattttcggagccatcttgactaccgatacagcgaatacaagagaattc 344
Query: 471 gtgcggctattgatcaacatgaaggtggtttggatgcattttcacgcggttacgaaaagc 530
|||| |||||||| |||||||||||||| ||||| | ||||| || ||||| |||||||
Sbjct: 345 gtgctgctattgaccaacatgaaggtggattggaagttttttctcgtggttatgaaaagc 404
Query: 531 ttggatttactcgcagcgctgaaggtatcacttacagagaatgggctcctggagcatact 590
|||||||||| ||||| ||| |||||||||||||| ||||||||||||||||||| | |
Sbjct: 405 ttggatttacccgcagtgctaaaggtatcacttaccgagaatgggctcctggagcgcatt 464
Query: 591 ctgcagcattagtaggtgacttcaacaactggaacccaaatgctgatgctatggccagaa 650
|||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||
Sbjct: 465 ctgcagcattagtaggtgacttcaacaattggaacccaaatgcagatactatgaccagag 524
Query: 651 atga 654
||||
Sbjct: 525 atga 528
Score = 40.1 bits (20), Expect = 0.38
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 caacctgaagaactacagatacctgaag 170
|||||||||||| ||||| |||||||||
Sbjct: 61 caacctgaagaattacaggtacctgaag 88
>gb|BI948391.1|BI948391 HVSMEl0009F19f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0009F19f, mRNA sequence
Length = 728
Score = 246 bits (124), Expect = 3e-063
Identities = 304/364 (83%)
Strand = Plus / Plus
Query: 2058 ttagatatcgtggtatgcaagagtttgaccaggcaatgcagcaccttgagggaaaatatg 2117
||||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||||
Sbjct: 1 ttagatatcgtggtatgcaagagttcgatcaggcaatgcagcatcttgaggaaaaatatg 60
Query: 2118 aattcatgacatctgatcactcatatgtatcacggaagcatgaggaggataaggtgatca 2177
|| ||||||||||| ||| ||||| || ||||| |||||||| |||||||||||||
Sbjct: 61 ggtttatgacatctgagcaccagtatgtttctcggaaacatgaggaagataaggtgatca 120
Query: 2178 tctttgagagaggagatttggtcttcgtgttcaacttccactggagcaatagctattttg 2237
|||| || |||||||||||||| || || ||||||||||||||||||||||||| |||||
Sbjct: 121 tcttcgaaagaggagatttggtatttgttttcaacttccactggagcaatagcttttttg 180
Query: 2238 actatcgcgttggttgtttcaagcctgggaagtacaagatcgttttagattctgacgatg 2297
|||| || ||||| |||| ||||||||||||||||||| | | ||||| ||||| ||||
Sbjct: 181 actaccgtgttgggtgttccaagcctgggaagtacaaggtggccttagactctgatgatg 240
Query: 2298 gccttttcggtggatttagtcggcttgatcatgacgctgagtacttcactgctgactggc 2357
|| || |||||||| || ||||||||||||| | || |||||||| | || |
Sbjct: 241 cactctttggtggattcagcaggcttgatcatgatgtcgactacttcacaaccgaacatc 300
Query: 2358 cgcatgacaacaggccgtgttctttctcggtctatgcacccagcagaacagccgtcgtat 2417
|||||||||||||||| | ||||||||||| || | || |||||||| || ||||| |
Sbjct: 301 cgcatgacaacaggccacgctctttctcggtgtacactccgagcagaactgcggtcgtgt 360
Query: 2418 atgc 2421
||||
Sbjct: 361 atgc 364
>gb|CB881353.1|CB881353 HM09I19w HM Hordeum vulgare subsp. vulgare cDNA clone HM09I19
3-PRIME, mRNA sequence
Length = 639
Score = 178 bits (90), Expect = 6e-043
Identities = 306/378 (80%)
Strand = Plus / Minus
Query: 1937 cctgaatggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcattcct 1996
|||||||||||||| ||||||||||| || ||| ||||||| ||| |||| ||
Sbjct: 639 cctgaatggatagactttccaagaggcccacaagtacttccaactggtaagttcatccca 580
Query: 1997 gggaataacaatagctttgataaatgccgccgtagatttgaccttggagatgcagattat 2056
|| |||||||| || | || |||||||| || ||||||||||| || |||||||| | |
Sbjct: 579 ggaaataacaacagttacgacaaatgccgtcgaagatttgacctgggtgatgcagaattt 520
Query: 2057 cttagatatcgtggtatgcaagagtttgaccaggcaatgcagcaccttgagggaaaatat 2116
|| || |||| ||||||||| | ||||| |||||||||||||| ||||||| |||||||
Sbjct: 519 ctcaggtatcatggtatgcagcaatttgatcaggcaatgcagcatcttgaggaaaaatat 460
Query: 2117 gaattcatgacatctgatcactcatatgtatcacggaagcatgaggaggataaggtgatc 2176
| || |||||||| || ||| || ||||| ||||| || ||||| ||||||||||||
Sbjct: 459 ggctttatgacatcagaccaccagtacgtatctcggaaacacgaggaagataaggtgatc 400
Query: 2177 atctttgagagaggagatttggtcttcgtgttcaacttccactggagcaatagctatttt 2236
| ||||| | ||| || ||||| || |||||||||||||||||||| |||||||||||
Sbjct: 399 gtgtttgaaaaaggggacttggtatttgtgttcaacttccactggagtaatagctatttc 340
Query: 2237 gactatcgcgttggttgtttcaagcctgggaagtacaagatcgttttagattctgacgat 2296
||||| || || ||||| || |||||||||||||||||| | || ||||| || |||| |
Sbjct: 339 gactaccgggtcggttgcttaaagcctgggaagtacaaggtggtgttagactcagacgct 280
Query: 2297 ggccttttcggtggattt 2314
|| || || |||||||||
Sbjct: 279 ggactctttggtggattt 262
>gb|BU995206.1|BU995206 HM09I19r HM Hordeum vulgare subsp. vulgare cDNA clone HM09I19
5-PRIME, mRNA sequence
Length = 610
Score = 176 bits (89), Expect = 3e-042
Identities = 245/297 (82%)
Strand = Plus / Plus
Query: 2018 aaatgccgccgtagatttgaccttggagatgcagattatcttagatatcgtggtatgcaa 2077
|||||||| || ||||||||||| || |||||||| | ||| || |||| |||||||||
Sbjct: 84 aaatgccgtcgaagatttgacctgggtgatgcagaatttctcaggtatcatggtatgcag 143
Query: 2078 gagtttgaccaggcaatgcagcaccttgagggaaaatatgaattcatgacatctgatcac 2137
| ||||| |||||||||||||| ||||||| |||||||| || |||||||| || |||
Sbjct: 144 caatttgatcaggcaatgcagcatcttgaggaaaaatatggctttatgacatcagaccac 203
Query: 2138 tcatatgtatcacggaagcatgaggaggataaggtgatcatctttgagagaggagatttg 2197
|| ||||| ||||| || ||||| |||||||||||| | ||||| | ||| || |||
Sbjct: 204 cagtacgtatctcggaaacacgaggaagataaggtgatcgtgtttgaaaaaggggacttg 263
Query: 2198 gtcttcgtgttcaacttccactggagcaatagctattttgactatcgcgttggttgtttc 2257
|| || |||||||||||||||||||| ||||||||||| ||||| || || ||||| ||
Sbjct: 264 gtatttgtgttcaacttccactggagtaatagctatttcgactaccgggtcggttgctta 323
Query: 2258 aagcctgggaagtacaagatcgttttagattctgacgatggccttttcggtggattt 2314
|||||||||||||||||| | || ||||| || |||| ||| || || |||||||||
Sbjct: 324 aagcctgggaagtacaaggtggtgttagactcagacgctggactctttggtggattt 380
>gb|AJ432603.1|AJ432603 AJ432603 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200084H10F1, mRNA sequence
Length = 666
Score = 168 bits (85), Expect = 6e-040
Identities = 232/281 (82%)
Strand = Plus / Plus
Query: 2141 tatgtatcacggaagcatgaggaggataaggtgatcatctttgagagaggagatttggtc 2200
||||| || ||||| |||||||| ||||||||||||||||| || ||||||||||||||
Sbjct: 8 tatgtttctcggaaacatgaggaagataaggtgatcatcttcgaaagaggagatttggta 67
Query: 2201 ttcgtgttcaacttccactggagcaatagctattttgactatcgcgttggttgtttcaag 2260
|| || ||||||||||||||||||||||||| ||||||||| || ||||| |||| ||||
Sbjct: 68 tttgttttcaacttccactggagcaatagcttttttgactaccgtgttgggtgttccaag 127
Query: 2261 cctgggaagtacaagatcgttttagattctgacgatggccttttcggtggatttagtcgg 2320
||||||||||||||| | | ||||| ||||| |||| || || |||||||| || ||
Sbjct: 128 cctgggaagtacaaggtggccttagactctgatgatgcactctttggtggattcagcagg 187
Query: 2321 cttgatcatgacgctgagtacttcactgctgactggccgcatgacaacaggccgtgttct 2380
||||||||||| | || |||||||| | || ||||||||||||||||| | |||
Sbjct: 188 cttgatcatgatgtcgactacttcacaaccgaacatccgcatgacaacaggccacgctct 247
Query: 2381 ttctcggtctatgcacccagcagaacagccgtcgtatatgc 2421
|||||||| || | || |||||||| || ||||| |||||
Sbjct: 248 ttctcggtgtacactccgagcagaactgcggtcgtgtatgc 288
>gb|BQ471544.1|BQ471544 HV02L24r HV Hordeum vulgare subsp. vulgare cDNA clone HV02L24
5-PRIME, mRNA sequence
Length = 629
Score = 168 bits (85), Expect = 6e-040
Identities = 232/281 (82%)
Strand = Plus / Plus
Query: 2141 tatgtatcacggaagcatgaggaggataaggtgatcatctttgagagaggagatttggtc 2200
||||| || ||||| |||||||| ||||||||||||||||| || ||||||||||||||
Sbjct: 22 tatgtttctcggaaacatgaggaagataaggtgatcatcttcgaaagaggagatttggta 81
Query: 2201 ttcgtgttcaacttccactggagcaatagctattttgactatcgcgttggttgtttcaag 2260
|| || ||||||||||||||||||||||||| ||||||||| || ||||| |||| ||||
Sbjct: 82 tttgttttcaacttccactggagcaatagcttttttgactaccgtgttgggtgttccaag 141
Query: 2261 cctgggaagtacaagatcgttttagattctgacgatggccttttcggtggatttagtcgg 2320
||||||||||||||| | | ||||| ||||| |||| || || |||||||| || ||
Sbjct: 142 cctgggaagtacaaggtggccttagactctgatgatgcactctttggtggattcagcagg 201
Query: 2321 cttgatcatgacgctgagtacttcactgctgactggccgcatgacaacaggccgtgttct 2380
||||||||||| | || |||||||| | || ||||||||||||||||| | |||
Sbjct: 202 cttgatcatgatgtcgactacttcacaaccgaacatccgcatgacaacaggccacgctct 261
Query: 2381 ttctcggtctatgcacccagcagaacagccgtcgtatatgc 2421
|||||||| || | || |||||||| || ||||| |||||
Sbjct: 262 ttctcggtgtacactccgagcagaactgcggtcgtgtatgc 302
>gb|BU970082.1|BU970082 HB13I18r BC Hordeum vulgare subsp. vulgare cDNA clone HB13I18
5-PRIME, mRNA sequence
Length = 195
Score = 168 bits (85), Expect = 6e-040
Identities = 145/165 (87%)
Strand = Plus / Plus
Query: 485 caacatgaaggtggtttggatgcattttcacgcggttacgaaaagcttggatttactcgc 544
|||||||||||||| ||||| | ||||| || ||||| ||||||||||||||||| |||
Sbjct: 12 caacatgaaggtggattggaagttttttctcgtggttatgaaaagcttggatttacccgc 71
Query: 545 agcgctgaaggtatcacttacagagaatgggctcctggagcatactctgcagcattagta 604
|| ||| ||||||||||| || ||||||||||||||||||| | |||||||||||||||
Sbjct: 72 agtgctaaaggtatcactgaccgagaatgggctcctggagcgcattctgcagcattagta 131
Query: 605 ggtgacttcaacaactggaacccaaatgctgatgctatggccaga 649
|||||||||||||| ||||||||||| || ||| ||||| |||||
Sbjct: 132 ggtgacttcaacaattggaacccaaaggcagatactatgaccaga 176
>gb|AW982619.3|AW982619 HVSMEg0003M05f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003M05f, mRNA sequence
Length = 642
Score = 165 bits (83), Expect = 1e-038
Identities = 224/271 (82%)
Strand = Plus / Plus
Query: 2151 ggaagcatgaggaggataaggtgatcatctttgagagaggagatttggtcttcgtgttca 2210
|||| |||||||| ||||||||||||||||| || |||||||||||||| || || ||||
Sbjct: 1 ggaaacatgaggaagataaggtgatcatcttcgaaagaggagatttggtatttgttttca 60
Query: 2211 acttccactggagcaatagctattttgactatcgcgttggttgtttcaagcctgggaagt 2270
||||||||||||||||||||| ||||||||| || ||||| |||| ||||||||||||||
Sbjct: 61 acttccactggagcaatagcttttttgactaccgtgttgggtgttccaagcctgggaagt 120
Query: 2271 acaagatcgttttagattctgacgatggccttttcggtggatttagtcggcttgatcatg 2330
||||| | | ||||| ||||| |||| || || |||||||| || ||||||||||||
Sbjct: 121 acaaggtggccttagactctgatgatgcactctttggtggattcagcaggcttgatcatg 180
Query: 2331 acgctgagtacttcactgctgactggccgcatgacaacaggccgtgttctttctcggtct 2390
| | || |||||||| | || ||||||||||||||||| | ||||||||||| |
Sbjct: 181 atgtcgactacttcacaaccgaacatccgcatgacaacaggccacgctctttctcggtgt 240
Query: 2391 atgcacccagcagaacagccgtcgtatatgc 2421
| | || |||||||| || ||||| |||||
Sbjct: 241 acactccgagcagaactgcggtcgtgtatgc 271
>gb|CB880027.1|CB880027 HM05E08w HM Hordeum vulgare subsp. vulgare cDNA clone HM05E08
3-PRIME, mRNA sequence
Length = 625
Score = 163 bits (82), Expect = 4e-038
Identities = 245/298 (82%), Gaps = 1/298 (0%)
Strand = Plus / Minus
Query: 2018 aaatgccgccgtagatttgaccttggagatgcagattatcttagatatcgtggtatgcaa 2077
|||||||| || ||||||||||| || |||||||| | ||| || |||| |||||||||
Sbjct: 558 aaatgccgtcgaagatttgacctgggtgatgcagaatttctcaggtatcatggtatgcag 499
Query: 2078 gagtttgaccaggcaatgcagcaccttgagggaaaatatgaattcatgacatctgatcac 2137
| ||||| |||||||||||||| ||||||| |||||||| || |||||||| || |||
Sbjct: 498 caatttgatcaggcaatgcagcatcttgaggaaaaatatggctttatgacatcagaccac 439
Query: 2138 tcatatgtatcacggaagcatgaggaggataaggtgatcatctttgagagaggagatttg 2197
|| ||||| ||||| || ||||| |||||||||||| | ||||| | ||| || |||
Sbjct: 438 cagtacgtatctcggaaacacgaggaagataaggtgatcgtgtttgaaaaaggggacttg 379
Query: 2198 gtcttcgtgttcaacttccactggagcaatagctattttgactatcgcgttggttg-ttt 2256
|| || |||||||||||||||||||| ||||||||||| ||||| || || ||||| ||
Sbjct: 378 gtatttgtgttcaacttccactggagtaatagctatttcgactaccgggtcggttgctta 319
Query: 2257 caagcctgggaagtacaagatcgttttagattctgacgatggccttttcggtggattt 2314
|||||||||||||||||| | || ||||| || |||| ||| || || |||||||||
Sbjct: 318 gaagcctgggaagtacaaggtggtgttagactcagacgctggactctttggtggattt 261
>gb|BU994498.1|BU994498 HM07E08r HM Hordeum vulgare subsp. vulgare cDNA clone HM07E08
5-PRIME, mRNA sequence
Length = 630
Score = 161 bits (81), Expect = 2e-037
Identities = 244/297 (82%), Gaps = 1/297 (0%)
Strand = Plus / Plus
Query: 2018 aaatgccgccgtagatttgaccttggagatgcagattatcttagatatcgtggtatgcaa 2077
|||||||| || ||||||||||| || |||||||| | ||| || |||| |||||||||
Sbjct: 83 aaatgccgtcgaagatttgacctgggtgatgcagaatttctcaggtatcatggtatgcag 142
Query: 2078 gagtttgaccaggcaatgcagcaccttgagggaaaatatgaattcatgacatctgatcac 2137
| ||||| |||||||||||||| ||||||| |||||||| || |||||||| || |||
Sbjct: 143 caatttgatcaggcaatgcagcatcttgaggaaaaatatggctttatgacatcagaccac 202
Query: 2138 tcatatgtatcacggaagcatgaggaggataaggtgatcatctttgagagaggagatttg 2197
|| ||||| ||||| || ||||| |||||||||||| | ||||| | ||| || |||
Sbjct: 203 cagtacgtatctcggaaacacgaggaagataaggtgatcgtgtttgaaaaaggggacttg 262
Query: 2198 gtcttcgtgttcaacttccactggagcaatagctattttgactatcgcgttggttgtttc 2257
|| || |||||||||||||||||||| ||||||||||| ||||| || || ||||| ||
Sbjct: 263 gtatttgtgttcaacttccactggagtaatagctatttcgactaccgggtcggttgctta 322
Query: 2258 aagcctgggaagtacaagatcgttttagattctgacgatggccttttcggtggattt 2314
|||||||||||| ||||| | || ||||| || |||| ||| || || |||||||||
Sbjct: 323 aagcctgggaag-acaaggtggtgttagactcagacgctggactctttggtggattt 378
>gb|CA025941.1|CA025941 HZ53J13r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53J13
5-PRIME, mRNA sequence
Length = 493
Score = 127 bits (64), Expect = 2e-027
Identities = 193/236 (81%)
Strand = Plus / Plus
Query: 2186 agaggagatttggtcttcgtgttcaacttccactggagcaatagctattttgactatcgc 2245
|||||||||||||| || || ||||||||||||||||||||||||| ||||||||| ||
Sbjct: 5 agaggagatttggtatttgttttcaacttccactggagcaatagcttttttgactaccgt 64
Query: 2246 gttggttgtttcaagcctgggaagtacaagatcgttttagattctgacgatggccttttc 2305
||||| |||| ||||||||||||||||||| | | ||||| ||||| |||| || ||
Sbjct: 65 gttgggtgttccaagcctgggaagtacaaggtggccttagactctgatgatgcactcttt 124
Query: 2306 ggtggatttagtcggcttgatcatgacgctgagtacttcactgctgactggccgcatgac 2365
|||||||| || ||||||||||||| | || |||||||| | || |||||||||
Sbjct: 125 ggtggattcagcaggcttgatcatgatgtcgactacttcacaaccgaacatccgcatgac 184
Query: 2366 aacaggccgtgttctttctcggtctatgcacccagcagaacagccgtcgtatatgc 2421
|||||||| | ||||||||||| || | || |||||||| || ||||| |||||
Sbjct: 185 aacaggccacgctctttctcggtgtacactccgagcagaactgcggtcgtgtatgc 240
>gb|AJ460560.1|AJ460560 AJ460560 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200020F08F1, mRNA sequence
Length = 360
Score = 111 bits (56), Expect = 1e-022
Identities = 185/228 (81%)
Strand = Plus / Plus
Query: 2194 tttggtcttcgtgttcaacttccactggagcaatagctattttgactatcgcgttggttg 2253
|||||| || || ||||||||||||||||||||||||| ||||||||| || ||||| ||
Sbjct: 1 tttggtatttgttttcaacttccactggagcaatagcttttttgactaccgtgttgggtg 60
Query: 2254 tttcaagcctgggaagtacaagatcgttttagattctgacgatggccttttcggtggatt 2313
|| ||||||||||||||||||| | | ||||| ||||| |||| || || ||||||||
Sbjct: 61 ttccaagcctgggaagtacaaggtggccttagactctgatgatgcactctttggtggatt 120
Query: 2314 tagtcggcttgatcatgacgctgagtacttcactgctgactggccgcatgacaacaggcc 2373
|| ||||||||||||| | || |||||||| | || |||||||||||||||||
Sbjct: 121 cagcaggcttgatcatgatgtcgactacttcacaaccgaacatccgcatgacaacaggcc 180
Query: 2374 gtgttctttctcggtctatgcacccagcagaacagccgtcgtatatgc 2421
| ||||||||||| || | || |||||||| || ||||| |||||
Sbjct: 181 acgctctttctcggtgtacactccgagcagaactgcggtcgtgtatgc 228
>gb|CB875153.1|CB875153 HX07H03w HX Hordeum vulgare subsp. vulgare cDNA clone HX07H03
3-PRIME, mRNA sequence
Length = 572
Score = 111 bits (56), Expect = 1e-022
Identities = 175/215 (81%)
Strand = Plus / Minus
Query: 2207 ttcaacttccactggagcaatagctattttgactatcgcgttggttgtttcaagcctggg 2266
||||||||||||||||||||||||| ||||||||| || ||||| |||| ||||||||||
Sbjct: 563 ttcaacttccactggagcaatagcttttttgactaccgtgttgggtgttccaagcctggg 504
Query: 2267 aagtacaagatcgttttagattctgacgatggccttttcggtggatttagtcggcttgat 2326
||||||||| | | ||||| ||||| |||| || || |||||||| || ||||||||
Sbjct: 503 aagtacaaggtggccttagactctgatgatgcactctttggtggattcagcaggcttgat 444
Query: 2327 catgacgctgagtacttcactgctgactggccgcatgacaacaggccgtgttctttctcg 2386
||||| | || |||||||| | || ||||||||||||||||| | |||||||||
Sbjct: 443 catgatgtcgantacttcacaaccgaacatccgcatgacaacaggccacgctctttctcg 384
Query: 2387 gtctatgcacccagcagaacagccgtcgtatatgc 2421
|| || | || |||||||| || ||||| |||||
Sbjct: 383 gtgtacactccgagcagaactgcggtcgtgtatgc 349
>gb|CV060459.1|CV060459 BNEL58d11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL58d11 5' similar to probable
1,4-alpha-glucan branching enzyme, mRNA sequence
Length = 697
Score = 91.7 bits (46), Expect = 1e-016
Identities = 166/205 (80%), Gaps = 1/205 (0%)
Strand = Plus / Plus
Query: 352 ggagaaaccacgagttatcccaccaccaggagatggccaacgaa-tatatgagattgacc 410
||||||||| | |||| ||||| |||||||||||| ||| || |||| ||||||||||
Sbjct: 225 ggagaaaccgcaagttgtcccaaaaccaggagatgggcaaaaaaatatacgagattgacc 284
Query: 411 caatgttggaagggtttcggggtcaccttgactaccgatacagtgaatataagagattac 470
||| | || ||| |||||| | || ||||||||||||||||| ||||| |||||| | |
Sbjct: 285 caacgctgaaagattttcggagccatcttgactaccgatacagcgaatacaagagaattc 344
Query: 471 gtgcggctattgatcaacatgaaggtggtttggatgcattttcacgcggttacgaaaagc 530
|||| ||| |||| ||||||||| |||| | | | | ||||| || ||||| |||||||
Sbjct: 345 gtgctgcttttgaccaacatgaaagtggatggnaggttttttctcggggttatgaaaagc 404
Query: 531 ttggatttactcgcagcgctgaagg 555
||||||| || ||||| ||| ||||
Sbjct: 405 ttggattaacccgcagtgctaaagg 429
Score = 40.1 bits (20), Expect = 0.38
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 caacctgaagaactacagatacctgaag 170
|||||||||||| ||||| |||||||||
Sbjct: 61 caacctgaagaattacaggtacctgaag 88
>gb|AF064563.1|AF064563 Hordeum vulgare cultivar Bomi starch branching enzyme IIb (sbeIIb)
gene, nuclear gene encoding plastid protein, partial cds
Length = 3960
Score = 79.8 bits (40), Expect = 4e-013
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 543 gcagcgctgaaggtatcacttacagagaatgggctcctggagca 586
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 3812 gcagcgctgaaggtatcacttaccgagaatgggctcctggagca 3855
>gb|CA025454.1|CA025454 HZ52D11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52D11
5-PRIME, mRNA sequence
Length = 577
Score = 77.8 bits (39), Expect = 2e-012
Identities = 96/115 (83%)
Strand = Plus / Plus
Query: 352 ggagaaaccacgagttatcccaccaccaggagatggccaacgaatatatgagattgaccc 411
||||||||| | |||| ||||| |||||||||||| ||| |||||| |||||||||||
Sbjct: 455 ggagaaaccgcaagttgtcccaaaaccaggagatgggcaaaaaatatacgagattgaccc 514
Query: 412 aatgttggaagggtttcggggtcaccttgactaccgatacagtgaatataagaga 466
|| | || ||| |||||| | || ||||||||||||||||| ||||| ||||||
Sbjct: 515 aacgctgaaagattttcggagccatcttgactaccgatacagcgaatacaagaga 569
Score = 60.0 bits (30), Expect = 4e-007
Identities = 77/92 (83%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 ggacttgccgtcggtgctcttcaggaggaaggacgctttctctcgcaccgttctgagctg 60
||||||||||||| ||||| |||||| ||||||| | ||||||| |||| ||||||||
Sbjct: 167 ggacttgccgtcgctgctcctcaggaagaaggac---tcctctcgcgccgtcctgagctg 223
Query: 61 cgctggtgctcctggaaaggtactggtgcctg 92
||| | ||||| || ||||| ||||||||||
Sbjct: 224 cgcggccgctccagggaaggtcctggtgcctg 255
Score = 40.1 bits (20), Expect = 0.38
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 caacctgaagaactacagatacctgaag 170
|||||||||||| ||||| |||||||||
Sbjct: 291 caacctgaagaattacaggtacctgaag 318
>gb|AF064562.1|AF064562 Hordeum vulgare cultivar Bomi starch branching enzyme IIa (sbeIIa)
gene, nuclear gene encoding plastid protein, partial cds
Length = 1852
Score = 56.0 bits (28), Expect = 6e-006
Identities = 79/96 (82%)
Strand = Plus / Plus
Query: 352 ggagaaaccacgagttatcccaccaccaggagatggccaacgaatatatgagattgaccc 411
||||||||| | |||| ||||| |||||||||||| ||| |||||| |||||||||||
Sbjct: 1339 ggagaaaccgcaagttgtcccaaaaccaggagatgggcaaaaaatatacgagattgaccc 1398
Query: 412 aatgttggaagggtttcggggtcaccttgactaccg 447
|| | || ||| |||||| | || |||||||||||
Sbjct: 1399 aacgctgaaagattttcggagccatcttgactaccg 1434
Score = 44.1 bits (22), Expect = 0.024
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 ggacttgccgtcggtgctcttcaggaggaaggac 34
||||||||||||| ||||| |||||| |||||||
Sbjct: 449 ggacttgccgtcgctgctcctcaggaagaaggac 482
>gb|BM097896.2|BM097896 EBpi03_SQ001_P15_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ001_P15 5', mRNA sequence
Length = 209
Score = 54.0 bits (27), Expect = 3e-005
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 2233 ttttgactatcgcgttggttgtttcaagcctgggaagtacaagatcgttttagattctga 2292
||||||||| || ||||| |||| ||||||||||||||||||| | | ||||| |||||
Sbjct: 3 ttttgactaccgtgttgggtgttccaagcctgggaagtacaaggtggccttagactctga 62
Query: 2293 cgatggccttttcggtggatttagtcggcttgatcatga 2331
|||| || || |||||||| | |||||||||||||
Sbjct: 63 tgatgcactctttggtggattcaacaggcttgatcatga 101
>gb|BG367041.1|BG367041 HVSMEi0009O06f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0009O06f, mRNA sequence
Length = 764
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| | ||||| ||||| ||||||||||| || || |||||||| ||
Sbjct: 229 ggaggtgatggctacttgaattttatgggtaatgagtttggccacccagaatggatcgac 288
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 289 tttccaagag 298
>gb|BM441900.2|BM441900 EBed07_SQ001_N21_R endosperm, 28 DPA, no treatment, cv Optic, EBed07
Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ001_N21 5', mRNA sequence
Length = 687
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| | ||||| ||||| ||||||||||| || || |||||||| ||
Sbjct: 306 ggaggtgatggctacttgaattttatgggtaatgagtttggccacccagaatggatcgac 365
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 366 tttccaagag 375
>gb|BU968118.1|BU968118 HB06H16r BC Hordeum vulgare subsp. vulgare cDNA clone HB06H16
5-PRIME, mRNA sequence
Length = 498
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| | ||||| ||||| ||||||||||| || || |||||||| ||
Sbjct: 322 ggaggtgatggctacttgaattttatgggtaatgagtttggccacccagaatggatcgac 381
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 382 tttccaagag 391
>gb|BU969855.1|BU969855 HB12M24r BC Hordeum vulgare subsp. vulgare cDNA clone HB12M24
5-PRIME, mRNA sequence
Length = 507
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| | ||||| ||||| ||||||||||| || || |||||||| ||
Sbjct: 324 ggaggtgatggctacttgaattttatgggtaatgagtttggccacccagaatggatcgac 383
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 384 tttccaagag 393
>gb|BU971976.1|BU971976 HB20D20r BC Hordeum vulgare subsp. vulgare cDNA clone HB20D20
5-PRIME, mRNA sequence
Length = 515
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| | ||||| ||||| ||||||||||| || || |||||||| ||
Sbjct: 267 ggaggtgatggctacttgaattttatgggtaatgagtttggccacccagaatggatcgac 326
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 327 tttccaagag 336
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 233,758
Number of Sequences: 312970
Number of extensions: 233758
Number of successful extensions: 65918
Number of sequences better than 0.5: 65
Number of HSP's better than 0.5 without gapping: 63
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 65730
Number of HSP's gapped (non-prelim): 170
length of query: 2756
length of database: 175,134,539
effective HSP length: 20
effective length of query: 2736
effective length of database: 168,875,139
effective search space: 462042380304
effective search space used: 462042380304
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)