BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591297.2.1
(786 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV914498.1|AV914498 AV914498 K. Sato unpublished cDNA li... 383 e-105
gb|CB882213.1|CB882213 HL01D12w HL Hordeum vulgare subsp. v... 383 e-105
emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan tr... 383 e-105
gb|CB882375.1|CB882375 HL01L03w HL Hordeum vulgare subsp. v... 363 6e-099
gb|AV919562.1|AV919562 AV919562 K. Sato unpublished cDNA li... 359 9e-098
gb|BJ465036.1|BJ465036 BJ465036 K. Sato unpublished cDNA li... 341 2e-092
gb|BM100605.2|BM100605 EBma01_SQ005_L10_R maternal, 4 DPA, ... 325 1e-087
gb|BJ468104.1|BJ468104 BJ468104 K. Sato unpublished cDNA li... 319 8e-086
gb|BM816265.1|BM816265 HB02B10_T3.ab1 HB Hordeum vulgare su... 313 5e-084
gb|AV931287.1|AV931287 AV931287 K. Sato unpublished cDNA li... 307 3e-082
gb|BQ471752.1|BQ471752 HV03F21r HV Hordeum vulgare subsp. v... 299 7e-080
gb|CA026314.1|CA026314 HZ55I22r HZ Hordeum vulgare subsp. v... 299 7e-080
gb|AV926405.1|AV926405 AV926405 K. Sato unpublished cDNA li... 291 2e-077
gb|AV915915.1|AV915915 AV915915 K. Sato unpublished cDNA li... 281 2e-074
gb|AL499877.1|AL499877 AL499877 Hordeum vulgare Barke etiol... 278 3e-073
gb|BM816264.1|BM816264 HB01H02_T3.ab1 HB Hordeum vulgare su... 254 4e-066
gb|AJ433692.1|AJ433692 AJ433692 S00002 Hordeum vulgare subs... 230 6e-059
gb|BM445218.2|BM445218 EBem09_SQ007_M07_R embryo, 1 Day ger... 216 8e-055
gb|CA026923.1|CA026923 HZ57F20r HZ Hordeum vulgare subsp. v... 143 1e-032
gb|BI780996.2|BI780996 EBma03_SQ001_B17_R maternal, 8 DPA, ... 141 4e-032
gb|BF622776.2|BF622776 HVSMEa0008K20f Hordeum vulgare seedl... 139 2e-031
gb|BG301219.2|BG301219 HVSMEb0019P17f Hordeum vulgare seedl... 127 6e-028
gb|AV921032.1|AV921032 AV921032 K. Sato unpublished cDNA li... 119 1e-025
gb|AL450708.1|AL450708 AL450708 Hordeum vulgare Barke etiol... 111 4e-023
gb|BU971930.1|BU971930 HB20B14r BC Hordeum vulgare subsp. v... 109 1e-022
gb|BG300583.1|BG300583 HVSMEb0017J11f Hordeum vulgare seedl... 88 5e-016
gb|BF629710.1|BF629710 HVSMEb0013D21f Hordeum vulgare seedl... 86 2e-015
gb|BF626811.2|BF626811 HVSMEb0001G10f Hordeum vulgare seedl... 86 2e-015
gb|BG310036.1|BG310036 HVSMEc0016C04f Hordeum vulgare seedl... 86 2e-015
gb|BQ468552.1|BQ468552 HM01J07T HM Hordeum vulgare subsp. v... 86 2e-015
gb|BF627738.2|BF627738 HVSMEb0005K17f Hordeum vulgare seedl... 84 8e-015
gb|BF626739.2|BF626739 HVSMEb0001D16f Hordeum vulgare seedl... 82 3e-014
gb|CB877507.1|CB877507 HP05D02T HP Hordeum vulgare subsp. v... 80 1e-013
gb|AL500460.1|AL500460 AL500460 Hordeum vulgare Barke etiol... 78 5e-013
gb|BG309440.1|BG309440 HVSMEc0010E08f Hordeum vulgare seedl... 78 5e-013
gb|AW982755.3|AW982755 HVSMEg0004C03f Hordeum vulgare pre-a... 78 5e-013
gb|BQ469314.1|BQ469314 HM04C11r HM Hordeum vulgare subsp. v... 78 5e-013
gb|BQ661581.1|BQ661581 HM04C11u HM Hordeum vulgare subsp. v... 78 5e-013
emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotra... 78 5e-013
gb|BF257539.3|BF257539 HVSMEf0013D01f Hordeum vulgare seedl... 74 8e-012
gb|BQ470845.1|BQ470845 HX04D09r HX Hordeum vulgare subsp. v... 74 8e-012
gb|BQ660118.1|BQ660118 HI01A16w HI Hordeum vulgare subsp. v... 74 8e-012
gb|BI778475.2|BI778475 EBro07_SQ003_G13_R root, 3 week, red... 74 8e-012
gb|BU988965.1|BU988965 HF19F01r HF Hordeum vulgare subsp. v... 74 8e-012
emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotra... 74 8e-012
gb|AL500257.1|AL500257 AL500257 Hordeum vulgare Barke etiol... 68 5e-010
gb|AL500052.1|AL500052 AL500052 Hordeum vulgare Barke etiol... 64 7e-009
gb|AL500119.1|AL500119 AL500119 Hordeum vulgare Barke etiol... 64 7e-009
gb|AL500129.1|AL500129 AL500129 Hordeum vulgare Barke etiol... 64 7e-009
gb|AL500197.1|AL500197 AL500197 Hordeum vulgare Barke etiol... 64 7e-009
gb|BI958106.1|BI958106 HVSMEn0013G22f Hordeum vulgare rachi... 64 7e-009
gb|BU995150.1|BU995150 HM09F19r HM Hordeum vulgare subsp. v... 64 7e-009
gb|CB876191.1|CB876191 HX10I22w HX Hordeum vulgare subsp. v... 64 7e-009
gb|CB881291.1|CB881291 HM09F19w HM Hordeum vulgare subsp. v... 64 7e-009
gb|BG300865.1|BG300865 HVSMEb0018L19f Hordeum vulgare seedl... 62 3e-008
gb|BM370804.2|BM370804 EBro04_SQ002_F05_R root, 3 week, sal... 62 3e-008
gb|BF260656.2|BF260656 HVSMEf0022J12f Hordeum vulgare seedl... 60 1e-007
gb|BE455947.3|BE455947 HVSMEg0017N10f Hordeum vulgare pre-a... 60 1e-007
gb|AL450913.1|AL450913 AL450913 Hordeum vulgare Barke etiol... 58 5e-007
gb|BQ471226.1|BQ471226 HV01L05T HV Hordeum vulgare subsp. v... 58 5e-007
gb|AJ433500.1|AJ433500 AJ433500 S00002 Hordeum vulgare subs... 56 2e-006
gb|CA023198.1|CA023198 HZ45I10r HZ Hordeum vulgare subsp. v... 56 2e-006
gb|CB875146.1|CB875146 HX07G17w HX Hordeum vulgare subsp. v... 56 2e-006
gb|BF631278.2|BF631278 HVSMEb0015H17f Hordeum vulgare seedl... 54 7e-006
gb|BQ665345.1|BQ665345 HX03B16u HX Hordeum vulgare subsp. v... 54 7e-006
gb|BQ763770.1|BQ763770 EBro03_SQ005_J09_R root, 3 week, wat... 54 7e-006
gb|BF257690.2|BF257690 HVSMEf0013J17f Hordeum vulgare seedl... 52 3e-005
gb|AV931288.1|AV931288 AV931288 K. Sato unpublished cDNA li... 52 3e-005
gb|BF622057.1|BF622057 HVSMEa0001K09f Hordeum vulgare seedl... 50 1e-004
gb|BF256789.2|BF256789 HVSMEf0011A08f Hordeum vulgare seedl... 50 1e-004
gb|BI777299.2|BI777299 EBro03_SQ002_M15_R root, 3 week, wat... 50 1e-004
gb|BF617914.1|BF617914 HVSMEc0002H15f Hordeum vulgare seedl... 48 4e-004
gb|BF623367.2|BF623367 HVSMEa0015K08f Hordeum vulgare seedl... 46 0.002
gb|BQ762274.1|BQ762274 EBro01_SQ005_G12 _R root, 3 week, hy... 46 0.002
gb|AL501717.1|AL501717 AL501717 Hordeum vulgare Barke roots... 44 0.007
gb|BF260946.2|BF260946 HVSMEf0023F18f Hordeum vulgare seedl... 44 0.007
gb|CB877582.1|CB877582 HP05H06T HP Hordeum vulgare subsp. v... 42 0.027
gb|BE422354.1|BE422354 HWM023cE.06r ITEC HWM Barley Leaf Li... 40 0.11
gb|BI777946.1|BI777946 EBro07_SQ001_H07_R root, 3 week, red... 40 0.11
gb|BF624613.3|BF624613 HVSMEa0017E09f Hordeum vulgare seedl... 40 0.11
gb|AJ460708.1|AJ460708 AJ460708 S00002 Hordeum vulgare subs... 40 0.11
gb|AJ460709.1|AJ460709 AJ460709 S00002 Hordeum vulgare subs... 40 0.11
gb|BQ460892.1|BQ460892 HE01O03r HE Hordeum vulgare subsp. v... 40 0.11
gb|BQ468019.1|BQ468019 HR01K20r HR Hordeum vulgare subsp. v... 40 0.11
gb|BQ660837.1|BQ660837 HI05L07u HI Hordeum vulgare subsp. v... 40 0.11
gb|BQ662795.1|BQ662795 HS04D13u HS Hordeum vulgare subsp. v... 40 0.11
gb|BI776827.2|BI776827 EBpi03_SQ001_B04_R pistil, 4 DPA, no... 40 0.11
gb|CA001491.1|CA001491 HS17J24u HS Hordeum vulgare subsp. v... 40 0.11
gb|CA010819.1|CA010819 HT08G02u HT Hordeum vulgare subsp. v... 40 0.11
gb|CB858845.1|CB858845 HI08H24w HI Hordeum vulgare subsp. v... 40 0.11
gb|AW982395.1|AW982395 HVSMEg0003C13f Hordeum vulgare pre-a... 38 0.42
>gb|AV914498.1|AV914498 AV914498 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6j23 5', mRNA sequence
Length = 612
Score = 383 bits (193), Expect = e-105
Identities = 380/437 (86%), Gaps = 9/437 (2%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| ||||||||||| || ||||||| || || ||||| ||
Sbjct: 555 tcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcg---tatcgttcgcggtc 499
Query: 411 ggtgcagtagttgtagatggtgtagcggcg-cctgacgtcggccaggcggcggtactgcg 469
|||||||||||||||||||||| || | |||||| ||| ||||||||||||||||
Sbjct: 498 tgtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcggcggtactgcg 440
Query: 470 cggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcaga 529
||||||| |||||| |||||| ||||| ||||||||||| ||||||||||||||||| |
Sbjct: 439 cggcgtccaggtcctggaactcgggctgatcccaccagcgggcgccctgggtggcgcaca 380
Query: 530 agcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacga 589
| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 379 acttggcctccgccgacgcctcgcagccgtcgacgtggaagccccggtaggaggcgacga 320
Query: 590 agggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgt 649
||||||| |||||||||||||||||||| ||||| || || |||||||||||||| ||||
Sbjct: 319 agggcgccttggaccagtccgtcttctcccgccctccccgagtcgcccagtcgtccgcgt 260
Query: 650 tccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacgcccaggtcgg 709
|||||||||| |||||||||||||| |||||| ||| |||||||||||||| |||||
Sbjct: 259 tccacaggctcgagtagagcttcataggctggtcgaaggggtaccgcacgccgaggtcct 200
Query: 710 cgctcgtgttcttgaacacccggatcggcacgtcgtccacgaagaacgcgatcatgttag 769
|| ||||||||||||||||||||||| ||||||||| ||||||||||||||| |||
Sbjct: 199 tgc---tgttcttgaacacccggatcggcgtgtcgtccacaaagaacgcgatcatg-tag 144
Query: 770 aggttccagaggacgga 786
|||||||||||||||||
Sbjct: 143 aggttccagaggacgga 127
>gb|CB882213.1|CB882213 HL01D12w HL Hordeum vulgare subsp. vulgare cDNA clone HL01D12
3-PRIME, mRNA sequence
Length = 531
Score = 383 bits (193), Expect = e-105
Identities = 380/437 (86%), Gaps = 9/437 (2%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| ||||||||||| || ||||||| || || ||||| ||
Sbjct: 434 tcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcg---tatcgttcgcggtc 378
Query: 411 ggtgcagtagttgtagatggtgtagcggcg-cctgacgtcggccaggcggcggtactgcg 469
|||||||||||||||||||||| || | |||||| ||| ||||||||||||||||
Sbjct: 377 tgtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcggcggtactgcg 319
Query: 470 cggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcaga 529
||||||| |||||| |||||| ||||| ||||||||||| ||||||||||||||||| |
Sbjct: 318 cggcgtccaggtcctggaactcgggctgatcccaccagcgggcgccctgggtggcgcaca 259
Query: 530 agcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacga 589
| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 258 acttggcctccgccgacgcctcgcagccgtcgacgtggaagccccggtaggaggcgacga 199
Query: 590 agggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgt 649
||||||| |||||||||||||||||||| ||||| || || |||||||||||||| ||||
Sbjct: 198 agggcgccttggaccagtccgtcttctcccgccctccccgagtcgcccagtcgtccgcgt 139
Query: 650 tccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacgcccaggtcgg 709
|||||||||| |||||||||||||| |||||| ||| |||||||||||||| |||||
Sbjct: 138 tccacaggctcgagtagagcttcataggctggtcgaaggggtaccgcacgccgaggtcct 79
Query: 710 cgctcgtgttcttgaacacccggatcggcacgtcgtccacgaagaacgcgatcatgttag 769
|| ||||||||||||||||||||||| ||||||||| ||||||||||||||| |||
Sbjct: 78 tgc---tgttcttgaacacccggatcggcgtgtcgtccacaaagaacgcgatcatg-tag 23
Query: 770 aggttccagaggacgga 786
|||||||||||||||||
Sbjct: 22 aggttccagaggacgga 6
>emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan transferase
Length = 1175
Score = 383 bits (193), Expect = e-105
Identities = 380/437 (86%), Gaps = 9/437 (2%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| ||||||||||| || ||||||| || || ||||| ||
Sbjct: 964 tcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcg---tatcgttcgcggtc 908
Query: 411 ggtgcagtagttgtagatggtgtagcggcg-cctgacgtcggccaggcggcggtactgcg 469
|||||||||||||||||||||| || | |||||| ||| ||||||||||||||||
Sbjct: 907 tgtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcggcggtactgcg 849
Query: 470 cggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcaga 529
||||||| |||||| |||||| ||||| ||||||||||| ||||||||||||||||| |
Sbjct: 848 cggcgtccaggtcctggaactcgggctgatcccaccagcgggcgccctgggtggcgcaca 789
Query: 530 agcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacga 589
| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 788 acttggcctccgccgacgcctcgcagccgtcgacgtggaagccccggtaggaggcgacga 729
Query: 590 agggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgt 649
||||||| |||||||||||||||||||| ||||| || || |||||||||||||| ||||
Sbjct: 728 agggcgccttggaccagtccgtcttctcccgccctccccgagtcgcccagtcgtccgcgt 669
Query: 650 tccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacgcccaggtcgg 709
|||||||||| |||||||||||||| |||||| ||| |||||||||||||| |||||
Sbjct: 668 tccacaggctcgagtagagcttcataggctggtcgaaggggtaccgcacgccgaggtcct 609
Query: 710 cgctcgtgttcttgaacacccggatcggcacgtcgtccacgaagaacgcgatcatgttag 769
|| ||||||||||||||||||||||| ||||||||| ||||||||||||||| |||
Sbjct: 608 tgc---tgttcttgaacacccggatcggcgtgtcgtccacaaagaacgcgatcatg-tag 553
Query: 770 aggttccagaggacgga 786
|||||||||||||||||
Sbjct: 552 aggttccagaggacgga 536
>gb|CB882375.1|CB882375 HL01L03w HL Hordeum vulgare subsp. vulgare cDNA clone HL01L03
3-PRIME, mRNA sequence
Length = 378
Score = 363 bits (183), Expect = 6e-099
Identities = 297/333 (89%), Gaps = 4/333 (1%)
Strand = Plus / Minus
Query: 454 aggcggcggtactgcgcggcgtcgaggtccctgaactccggctggtcccaccagcgcgcg 513
||||||||||||||||||||||| |||||| |||||| ||||| ||||||||||| |||
Sbjct: 334 aggcggcggtactgcgcggcgtccaggtcctggaactcgggctgatcccaccagcgggcg 275
Query: 514 ccctgggtggcgcagaagcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccg 573
|||||||||||||| || |||||||| || ||||||||||||||||||||||||||
Sbjct: 274 ccctgggtggcgcacaacttggcctccgccgacgcctcgcagccgtcgacgtggaagccc 215
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
||||||||||||||||||||||| |||||||||||||||||||| ||||| || || |||
Sbjct: 214 cggtaggaggcgacgaagggcgccttggaccagtccgtcttctcccgccctccccgagtc 155
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtac 693
||||||||||| |||||||||||||| |||||||||||||| |||||| ||| ||||||
Sbjct: 154 gcccagtcgtccgcgttccacaggctcgagtagagcttcataggctggtcgaaggggtac 95
Query: 694 cgcacgcccaggtcggcgctcgtgttcttgaacacccggatcggcacgtcgtccacgaag 753
|||||||| ||||| || ||||||||||||||||||||||| ||||||||| |||
Sbjct: 94 cgcacgccgaggtccttgc---tgttcttgaacacccggatcggcgtgtcgtccacaaag 38
Query: 754 aacgcgatcatgttagaggttccagaggacgga 786
|||||||||||| ||||||||||||||||||||
Sbjct: 37 aacgcgatcatg-tagaggttccagaggacgga 6
>gb|AV919562.1|AV919562 AV919562 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6j23 3', mRNA sequence
Length = 571
Score = 359 bits (181), Expect = 9e-098
Identities = 361/417 (86%), Gaps = 8/417 (1%)
Strand = Plus / Plus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| ||||||||||| || ||||||| || || ||||| ||
Sbjct: 156 tcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcg---tatcgttcgcggtc 212
Query: 411 ggtgcagtagttgtagatggtgtagcggcg-cctgacgtcggccaggcggcggtactgcg 469
|||||||||||||||||||||| || | |||||| ||| ||||||||||||||||
Sbjct: 213 tgtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcggcggtactgcg 271
Query: 470 cggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcaga 529
||||||| |||||| |||||| ||||| ||||||||||| ||||||||||||||||| |
Sbjct: 272 cggcgtccaggtcctggaactcgggctgatcccaccagcgggcgccctgggtggcgcaca 331
Query: 530 agcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacga 589
| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 332 acttggcctccgccgacgcctcgcagccgtcgacgtggaagccccggtaggaggcgacga 391
Query: 590 agggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgt 649
||||||| |||||||||||||||||||| ||||| || || |||||||||||||| ||||
Sbjct: 392 agggcgccttggaccagtccgtcttctcccgccctccccgagtcgcccagtcgtccgcgt 451
Query: 650 tccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacgcccaggtcgg 709
|||||||||| |||||||||||||| |||||| ||| |||||||||||||| |||||
Sbjct: 452 tccacaggctcgagtagagcttcataggctggtcgaaggggtaccgcacgccgaggtcct 511
Query: 710 cgctcgtgttcttgaacacccggatcggcacgtcgtccacgaagaacgcgatcatgt 766
|| ||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 512 tgc---tgttcttgaacacccggatcggcgtgtcgtccacaaagaacgcgatcatgt 565
>gb|BJ465036.1|BJ465036 BJ465036 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c01 5', mRNA sequence
Length = 505
Score = 341 bits (172), Expect = 2e-092
Identities = 352/408 (86%), Gaps = 8/408 (1%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| ||||||||||| || ||||||| || || ||||| ||
Sbjct: 470 tcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcg---tatcgttcgcggtc 414
Query: 411 ggtgcagtagttgtagatggtgtagcggcg-cctgacgtcggccaggcggcggtactgcg 469
|||||||||||||||||||||| || | |||||| ||| ||||||||||||||||
Sbjct: 413 tgtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcggcggtactgcg 355
Query: 470 cggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcaga 529
||||||| |||||| |||||| ||||| ||||||||||| ||||||||||||||||| |
Sbjct: 354 cggcgtccaggtcctggaactcgggctgatcccaccagcgggcgccctgggtggcgcaca 295
Query: 530 agcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacga 589
| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 294 acttggcctccgccgacgcctcgcagccgtcgacgtggaagccccggtaggaggcgacga 235
Query: 590 agggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgt 649
||||||| |||||||||||||||||||| ||||| || || |||||||||||||| ||||
Sbjct: 234 agggcgccttggaccagtccgtcttctcccgccctccccgagtcgcccagtcgtccgcgt 175
Query: 650 tccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacgcccaggtcgg 709
|||||||||| |||||||||||||| |||||| ||| |||||||||||||| |||||
Sbjct: 174 tccacaggctcgagtagagcttcataggctggtcgaaggggtaccgcacgccgaggtcct 115
Query: 710 cgctcgtgttcttgaacacccggatcggcacgtcgtccacgaagaacg 757
|| ||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 114 tgc---tgttcttgaacacccggatcggcgtgtcgtccacaaagaacg 70
>gb|BM100605.2|BM100605 EBma01_SQ005_L10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ005_L10 5', mRNA sequence
Length = 414
Score = 325 bits (164), Expect = 1e-087
Identities = 278/314 (88%), Gaps = 4/314 (1%)
Strand = Plus / Minus
Query: 473 cgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagc 532
|||| |||||| |||||| ||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 414 cgtccaggtcctggaactcgggctgatcccaccagcgggcgccctgggtggcgcacaact 355
Query: 533 gcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagg 592
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 354 tggcctccgccgacgcctcgcagccgtcgacgtggaagccccggtaggaggcgacgaagg 295
Query: 593 gcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttcc 652
|||| |||||||||||||||||||| ||||| || || |||||||||||||| |||||||
Sbjct: 294 gcgccttggaccagtccgtcttctcccgccctccccgagtcgcccagtcgtccgcgttcc 235
Query: 653 acaggctggagtagagcttcatcggctggctgaacgggtaccgcacgcccaggtcggcgc 712
||||||| |||||||||||||| |||||| ||| |||||||||||||| ||||| ||
Sbjct: 234 acaggctcgagtagagcttcataggctggtcgaaggggtaccgcacgccgaggtccttgc 175
Query: 713 tcgtgttcttgaacacccggatcggcacgtcgtccacgaagaacgcgatcatgttagagg 772
||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||
Sbjct: 174 ---tgttcttgaacacccggatcggcgtgtcgtccacaaagaacgcgatcatg-tagagg 119
Query: 773 ttccagaggacgga 786
||||||||||||||
Sbjct: 118 ttccagaggacgga 105
>gb|BJ468104.1|BJ468104 BJ468104 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c01 3', mRNA sequence
Length = 628
Score = 319 bits (161), Expect = 8e-086
Identities = 336/389 (86%), Gaps = 9/389 (2%)
Strand = Plus / Plus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| ||||||||||| || ||||||| || || ||||| ||
Sbjct: 209 tcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcg---tatcgttcgcggtc 265
Query: 411 ggtgcagtagttgtagatggtgtagcggcg-cctgacgtcggccaggcggcggtactgcg 469
|||||||||||||||||||||| || | |||||| ||| ||||||||||||||||
Sbjct: 266 tgtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcggcggtactgcg 324
Query: 470 cggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcaga 529
||||||| |||||| |||||| ||||| ||||||||||| ||||||||||||||||| |
Sbjct: 325 cggcgtccaggtcctggaactcgggctgatcccaccagcgggcgccctgggtggcgcaca 384
Query: 530 agcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacga 589
| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 acttggcctccgccgacgcctcgcagccgtcgacgtggaagccccggtaggaggcgacga 444
Query: 590 agggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgt 649
||||||| |||||||||||||||||||| ||||| || || |||||||||||||| ||||
Sbjct: 445 agggcgccttggaccagtccgtcttctcccgccctccccgagtcgcccagtcgtccgcgt 504
Query: 650 tccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacgccc-aggtcg 708
|||||||||| |||||||||||||| |||||| ||| ||||||||||||||| |||||
Sbjct: 505 tccacaggctcgagtagagcttcataggctggtcgaaggggtaccgcacgcccgaggtcc 564
Query: 709 gcgctcgtgttcttgaacacccggatcgg 737
|| ||||||||||||||||||||||
Sbjct: 565 ttgc---tgttcttgaacacccggatcgg 590
>gb|BM816265.1|BM816265 HB02B10_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB02B10_T3.ab1 similar to Glucan
endo-1,6-beta-glucosidase,Cellulase,
Xyloglucan:xyloglucosyl
transferase,Licheninase,Endo-1,3(4)-beta-glucanase,
Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 575
Score = 313 bits (158), Expect = 5e-084
Identities = 306/352 (86%), Gaps = 5/352 (1%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| ||||||||||| || ||||||| || || ||||| ||
Sbjct: 353 tcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcg---tatcgttcgcggtc 297
Query: 411 ggtgcagtagttgtagatggtgtagcggcg-cctgacgtcggccaggcggcggtactgcg 469
|||||||||||||||||||||| || | |||||| ||| ||||||||||||||||
Sbjct: 296 tgtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcggcggtactgcg 238
Query: 470 cggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcaga 529
||||||| |||||| |||||| ||||| ||||||||||| ||||||||||||||||| |
Sbjct: 237 cggcgtccaggtcctggaactcgggctgatcccaccagcgggcgccctgggtggcgcaca 178
Query: 530 agcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacga 589
| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 177 acttggcctccgccgacgcctcgcagccgtcgacgtggaagccccggtaggaggcgacga 118
Query: 590 agggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgt 649
||||||| |||||||||||||||||||| ||||| || || |||||||||||||| ||||
Sbjct: 117 agggcgccttggaccagtccgtcttctcccgccctccccgagtcgcccagtcgtccgcgt 58
Query: 650 tccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacgcc 701
|||||||||| |||||||||||||| |||||| ||| ||||||||||||||
Sbjct: 57 tccacaggctcgagtagagcttcataggctggtcgaaggggtaccgcacgcc 6
>gb|AV931287.1|AV931287 AV931287 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19e01 3', mRNA sequence
Length = 541
Score = 307 bits (155), Expect = 3e-082
Identities = 303/349 (86%), Gaps = 5/349 (1%)
Strand = Plus / Plus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| ||||||||||| || ||||||| || || ||||| ||
Sbjct: 197 tcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcg---tatcgttcgcggtc 253
Query: 411 ggtgcagtagttgtagatggtgtagcggcg-cctgacgtcggccaggcggcggtactgcg 469
|||||||||||||||||||||| || | |||||| ||| ||||||||||||||||
Sbjct: 254 tgtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcggcggtactgcg 312
Query: 470 cggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcaga 529
||||||| |||||| |||||| ||||| ||||||||||| ||||||||||||||||| |
Sbjct: 313 cggcgtccaggtcctggaactcgggctgatcccaccagcgggcgccctgggtggcgcaca 372
Query: 530 agcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacga 589
| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 373 acttggcctccgccgacgcctcgcagccgtcgacgtggaagccccggtaggaggcgacga 432
Query: 590 agggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgt 649
||||||| |||||||||||||||||||| ||||| || || |||||||||||||| ||||
Sbjct: 433 agggcgccttggaccagtccgtcttctcccgccctccccgagtcgcccagtcgtccgcgt 492
Query: 650 tccacaggctggagtagagcttcatcggctggctgaacgggtaccgcac 698
|||||||||| |||||||||||||| |||||| ||| |||||||||||
Sbjct: 493 tccacaggctcgagtagagcttcataggctggtcgaaggggtaccgcac 541
>gb|BQ471752.1|BQ471752 HV03F21r HV Hordeum vulgare subsp. vulgare cDNA clone HV03F21
5-PRIME, mRNA sequence
Length = 502
Score = 299 bits (151), Expect = 7e-080
Identities = 246/276 (89%), Gaps = 4/276 (1%)
Strand = Plus / Minus
Query: 511 gcgccctgggtggcgcagaagcgcgcctccgcggaggcctcgcagccgtcgacgtggaag 570
||||||||||||||||| || |||||||| || ||||||||||||||||||||||||
Sbjct: 500 gcgccctgggtggcgcacaacttggcctccgccgacgcctcgcagccgtcgacgtggaag 441
Query: 571 ccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgg 630
|| ||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||
Sbjct: 440 ccncggtaggaggcgacgaagggcgccttggaccagtccgtcttctcccgccctccccga 381
Query: 631 gtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacggg 690
|||||||||||||| |||||||||||||| |||||||||||||| |||||| ||| |||
Sbjct: 380 gtcgcccagtcgtccgcgttccacaggctcgagtagagcttcataggctggtcgaagggg 321
Query: 691 taccgcacgcccaggtcggcgctcgtgttcttgaacacccggatcggcacgtcgtccacg 750
||||||||||| ||||| || ||||||||||||||||||||||| |||||||||
Sbjct: 320 taccgcacgccgaggtccttgc---tgttcttgaacacccggatcggcgtgtcgtccaca 264
Query: 751 aagaacgcgatcatgttagaggttccagaggacgga 786
||||||||||||||| ||||||||||||||||||||
Sbjct: 263 aagaacgcgatcatg-tagaggttccagaggacgga 229
>gb|CA026314.1|CA026314 HZ55I22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ55I22
5-PRIME, mRNA sequence
Length = 397
Score = 299 bits (151), Expect = 7e-080
Identities = 299/345 (86%), Gaps = 5/345 (1%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| ||||||||||| || ||||||| || || ||||| ||
Sbjct: 349 tcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcg---tatcgttcgcggtc 293
Query: 411 ggtgcagtagttgtagatggtgtagcggcg-cctgacgtcggccaggcggcggtactgcg 469
|||||||||||||||||||||| || | |||||| ||| ||||||||||||||||
Sbjct: 292 tgtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcggcggtactgcg 234
Query: 470 cggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcaga 529
||||||| |||||| |||||| ||||| ||||||||||| ||||||||||||||||| |
Sbjct: 233 cggcgtccaggtcctggaactcgggctgatcccaccagcgggcgccctgggtggcgcaca 174
Query: 530 agcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacga 589
| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 173 acttggcctccgccgacgcctcgcagccgtcgacgtggaagccccggtaggaggcgacga 114
Query: 590 agggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgt 649
||||||| |||||||||||||||||||| ||||| || || |||||||||||||| ||||
Sbjct: 113 agggcgccttggaccagtccgtcttctcccgccctccccgagtcgcccagtcgtccgcgt 54
Query: 650 tccacaggctggagtagagcttcatcggctggctgaacgggtacc 694
|||||||||| |||||||||||||| |||||| ||| |||||||
Sbjct: 53 tccacaggctcgagtagagcttcataggctggtcgaaggggtacc 9
>gb|AV926405.1|AV926405 AV926405 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19e01 5', mRNA sequence
Length = 566
Score = 291 bits (147), Expect = 2e-077
Identities = 283/325 (87%), Gaps = 5/325 (1%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| ||||||||||| || ||||||| || || ||||| ||
Sbjct: 345 tcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcg---tatcgttcgcggtc 289
Query: 411 ggtgcagtagttgtagatggtgtagcggcg-cctgacgtcggccaggcggcggtactgcg 469
|||||||||||||||||||||| || | |||||| ||| ||||||||||||||||
Sbjct: 288 tgtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcggcggtactgcg 230
Query: 470 cggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcaga 529
||||||| |||||| |||||| ||||| ||||||||||| ||||||||||||||||| |
Sbjct: 229 cggcgtccaggtcctggaactcgggctgatcccaccagcgggcgccctgggtggcgcaca 170
Query: 530 agcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacga 589
| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 169 acttggcctccgccgacgcctcgcagccgtcgacgtggaagccccggtaggaggcgacga 110
Query: 590 agggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgt 649
||||||| |||||||||||||||||||| ||||| || || |||||||||||||| ||||
Sbjct: 109 agggcgccttggaccagtccgtcttctcccgccctccccgagtcgcccagtcgtccgcgt 50
Query: 650 tccacaggctggagtagagcttcat 674
|||||||||| ||||||||||||||
Sbjct: 49 tccacaggctcgagtagagcttcat 25
>gb|AV915915.1|AV915915 AV915915 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16j19 5', mRNA sequence
Length = 331
Score = 281 bits (142), Expect = 2e-074
Identities = 240/272 (88%), Gaps = 3/272 (1%)
Strand = Plus / Minus
Query: 486 gaactccggctggtcccaccagcgcgcgccctgggtggcgcagaagcgcgcctccgcgga 545
|||||| ||||| ||||||||||| ||||||||||||||||| || |||||||| ||
Sbjct: 330 gaactcgggctgatcccaccagcgggcgccctgggtggcgcacaacttggcctccgccga 271
Query: 546 ggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggacca 605
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 270 cgcctcgcagccgtcgacgtggaagccccggtaggaggcgacgaagggcgccttggacca 211
Query: 606 gtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagta 665
|||||||||||| ||||| || || |||||||||||||| |||||||||||||| |||||
Sbjct: 210 gtccgtcttctcccgccctccccgagtcgcccagtcgtccgcgttccacaggctcgagta 151
Query: 666 gagcttcatcggctggctgaacgggtaccgcacgcccaggtcggcgctcgtgttcttgaa 725
||||||||| |||||| ||| |||||||||||||| ||||| || ||||||||||
Sbjct: 150 gagcttcataggctggtcgaaggggtaccgcacgccgaggtccttgc---tgttcttgaa 94
Query: 726 cacccggatcggcacgtcgtccacgaagaacg 757
||||||||||||| ||||||||| |||||||
Sbjct: 93 cacccggatcggcgtgtcgtccacaaagaacg 62
>gb|AL499877.1|AL499877 AL499877 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03O01r 3', mRNA sequence
Length = 497
Score = 278 bits (140), Expect = 3e-073
Identities = 278/321 (86%), Gaps = 5/321 (1%)
Strand = Plus / Plus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
||| |||||||||||||| ||||||||||| || ||||||| || || ||||| ||
Sbjct: 181 tcanacgtcgcggtcgcgtttgcactcgggcgacatggcggcg---tatcgttcgcggtc 237
Query: 411 ggtgcagtagttgtagatggtgtagcggcg-cctgacgtcggccaggcggcggtactgcg 469
|||||||||||||||||||||| || | |||||| ||| ||||||||||||||||
Sbjct: 238 tgtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcggcggtactgcg 296
Query: 470 cggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcaga 529
||||||| |||||| |||||| ||||| ||||||||||| ||||||||||||||||| |
Sbjct: 297 cggcgtccaggtcctggaactcgggctgatcccaccagcgggcgccctgggtggcgcaca 356
Query: 530 agcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacga 589
| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 357 acttggcctccgccgacgcctcgcagccgtcgacgtggaagccccggtaggaggcgacga 416
Query: 590 agggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgt 649
||||||| |||||||||||||||||||| ||||| || || |||||||||||||| ||||
Sbjct: 417 agggcgccttggaccagtccgtcttctcccgccctccccgagtcgcccagtcgtccgcgt 476
Query: 650 tccacaggctggagtagagct 670
|||||||||| ||||||||||
Sbjct: 477 tccacaggctcgagtagagct 497
>gb|BM816264.1|BM816264 HB01H02_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB01H02_T3.ab1 similar to Glucan
endo-1,6-beta-glucosidase,Cellulase,
Xyloglucan:xyloglucosyl
transferase,Licheninase,Endo-1,3(4)-beta-glucanase,
Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 814
Score = 254 bits (128), Expect = 4e-066
Identities = 221/249 (88%), Gaps = 5/249 (2%)
Strand = Plus / Minus
Query: 538 tccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcg 597
||||| || |||| |||||||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 780 tccgcagacgccttgcagccgtngacgtg-aagccccggtaggaggcgacgaagggcgcc 722
Query: 598 ttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacagg 657
|||||||||||||||||||| ||||| || || |||||||||||||| ||||||||||||
Sbjct: 721 ttggaccagtccgtcttctcccgccctccccgagtcgcccagtcgtccgcgttccacagg 662
Query: 658 ctggagtagagcttcatcggctggctgaacgggtaccgcacgcccaggtcggcgctcgtg 717
|| |||||||||||||| |||||| ||| |||||||||||||| ||||| || ||
Sbjct: 661 ctcgagtagagcttcataggctggtcgaaggggtaccgcacgccgaggtccttgc---tg 605
Query: 718 ttcttgaacacccggatcggcacgtcgtccacgaagaacgcgatcatgttagaggttcca 777
||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||
Sbjct: 604 ttcttgaacacccggatcggcgtgtcgtccacaaagaacgcgatcatg-tagaggttcca 546
Query: 778 gaggacgga 786
|||||||||
Sbjct: 545 gaggacgga 537
>gb|AJ433692.1|AJ433692 AJ433692 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200068G07F1, mRNA sequence
Length = 399
Score = 230 bits (116), Expect = 6e-059
Identities = 234/270 (86%), Gaps = 5/270 (1%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| ||||||||||| || ||||||| || || ||||| ||
Sbjct: 268 tcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcg---tatcgttcgcggtc 212
Query: 411 ggtgcagtagttgtagatggtgtagcggcg-cctgacgtcggccaggcggcggtactgcg 469
|||||||||||||||||||||| || | |||||| ||| ||||||||||||||||
Sbjct: 211 tgtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcggcggtactgcg 153
Query: 470 cggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcaga 529
||||||| |||||| |||||| ||||| ||||||||||| ||||||||||||||||| |
Sbjct: 152 cggcgtccaggtcctggaactcgggctgatcccaccagcgggcgccctgggtggcgcaca 93
Query: 530 agcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacga 589
| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 92 acttggcctccgccgacgcctcgcagccgtcgacgtggaagccccggtaggaggcgacga 33
Query: 590 agggcgcgttggaccagtccgtcttctcgc 619
||||||| ||||||||||||||||||||||
Sbjct: 32 agggcgccttggaccagtccgtcttctcgc 3
>gb|BM445218.2|BM445218 EBem09_SQ007_M07_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ007_M07 5', mRNA sequence
Length = 419
Score = 216 bits (109), Expect = 8e-055
Identities = 227/263 (86%), Gaps = 5/263 (1%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| ||||||||||| || ||||||| || || ||||| ||
Sbjct: 259 tcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcg---tatcgttcgcggtc 203
Query: 411 ggtgcagtagttgtagatggtgtagcggcg-cctgacgtcggccaggcggcggtactgcg 469
|||||||||||||||||||||| || | |||||| ||| ||||||||||||||||
Sbjct: 202 tgtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcggcggtactgcg 144
Query: 470 cggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcaga 529
||||||| |||||| |||||| ||||| ||||||||||| ||||||||||||||||| |
Sbjct: 143 cggcgtccaggtcctggaactcgggctgatcccaccagcgggcgccctgggtggcgcaca 84
Query: 530 agcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacga 589
| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 83 acttggcctccgccgacgcctcgcagccgtcgacgtggaagccccggtaggaggcgacga 24
Query: 590 agggcgcgttggaccagtccgtc 612
||||||| |||||||||||||||
Sbjct: 23 agggcgccttggaccagtccgtc 1
>gb|CA026923.1|CA026923 HZ57F20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57F20
5-PRIME, mRNA sequence
Length = 387
Score = 143 bits (72), Expect = 1e-032
Identities = 129/146 (88%), Gaps = 4/146 (2%)
Strand = Plus / Minus
Query: 641 cgtcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacgc 700
|||| |||||||||||||| |||||||||||||| |||||| ||| |||||||||||||
Sbjct: 387 cgtccgcgttccacaggctcgagtagagcttcataggctggtcgaaggggtaccgcacgc 328
Query: 701 ccaggtcggcgctcgtgttcttgaacacccggatcggcacgtcgtccacgaagaacgcga 760
| ||||| ||| |||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 327 cgaggtccttgct---gttcttgaacacccggatcggcgtgtcgtccacaaagaacgcga 271
Query: 761 tcatgttagaggttccagaggacgga 786
||||| ||||||||||||||||||||
Sbjct: 270 tcatg-tagaggttccagaggacgga 246
>gb|BI780996.2|BI780996 EBma03_SQ001_B17_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ001_B17 5', mRNA sequence
Length = 563
Score = 141 bits (71), Expect = 4e-032
Identities = 125/141 (88%), Gaps = 4/141 (2%)
Strand = Plus / Minus
Query: 646 gcgttccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacgcccagg 705
|||||||||||||| |||||||||||||| |||||| ||| |||||||||||||| |||
Sbjct: 563 gcgttccacaggctcgagtagagcttcataggctggtcgaaggggtaccgcacgccgagg 504
Query: 706 tcggcgctcgtgttcttgaacacccggatcggcacgtcgtccacgaagaacgcgatcatg 765
|| ||| |||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 503 tccttgct---gttcttgaacacccggatcggcgtgtcgtccacaaagaacgcgatcatg 447
Query: 766 ttagaggttccagaggacgga 786
||||||||||||||||||||
Sbjct: 446 -tagaggttccagaggacgga 427
>gb|BF622776.2|BF622776 HVSMEa0008K20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0008K20f, mRNA sequence
Length = 708
Score = 139 bits (70), Expect = 2e-031
Identities = 136/156 (87%), Gaps = 4/156 (2%)
Strand = Plus / Minus
Query: 631 gtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacggg 690
|||||||||||||| |||||||||||||| |||||||||||||| |||||| ||| |||
Sbjct: 693 gtcgcccagtcgtccgcgttccacaggctcgagtagagcttcataggctggtcgaagggg 634
Query: 691 taccgcacgcccaggtcggcgctcgtgttcttgaacacccggatcggcacgtcgtccacg 750
|||||||| || ||||| || ||||||||||||||||||||||| |||||||||
Sbjct: 633 taccgcaccccgaggtccttgc---tgttcttgaacacccggatcggcgtgtcgtccaca 577
Query: 751 aagaacgcgatcatgttagaggttccagaggacgga 786
||||||||||||||| || |||||||||||| ||||
Sbjct: 576 aagaacgcgatcatg-tacaggttccagaggccgga 542
>gb|BG301219.2|BG301219 HVSMEb0019P17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019P17f, mRNA sequence
Length = 436
Score = 127 bits (64), Expect = 6e-028
Identities = 176/210 (83%), Gaps = 5/210 (2%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| ||||||||||| || ||||||| || || ||||| ||
Sbjct: 206 tcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcg---tatcgttcgcggtc 150
Query: 411 ggtgcagtagttgtagatggtgtagcggcg-cctgacgtcggccaggcggcggtactgcg 469
|||||||||||||||||||||| || | |||||| ||| ||||||||||||||||
Sbjct: 149 tgtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcggcggtactgcg 91
Query: 470 cggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcaga 529
||||||| |||||| |||||| ||||| ||||||||||| ||||||||||||||||| |
Sbjct: 90 cggcgtccaggtcctggaactcgggctgatcccaccagcgggcgccctgggtggcgcaca 31
Query: 530 agcgcgcctccgcggaggcctcgcagccgt 559
| |||||||| || |||||||||||||
Sbjct: 30 acttggcctccgccgacgcctcgcagccgt 1
>gb|AV921032.1|AV921032 AV921032 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16j19 3', mRNA sequence
Length = 338
Score = 119 bits (60), Expect = 1e-025
Identities = 151/178 (84%), Gaps = 5/178 (2%)
Strand = Plus / Plus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| ||||||||||| || ||||||| || || ||||| ||
Sbjct: 155 tcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcg---tatcgttcgcggtc 211
Query: 411 ggtgcagtagttgtagatggtgtagcggcg-cctgacgtcggccaggcggcggtactgcg 469
|||||||||||||||||||||| || | |||||| ||| ||||||||||||||||
Sbjct: 212 tgtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcggcggtactgcg 270
Query: 470 cggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgca 527
||||||| |||||| |||||| ||||| ||||||||||| |||||||||||||||||
Sbjct: 271 cggcgtccaggtcctggaactcgggctgatcccaccagcgggcgccctgggtggcgca 328
>gb|AL450708.1|AL450708 AL450708 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03O01u 5', mRNA sequence
Length = 667
Score = 111 bits (56), Expect = 4e-023
Identities = 108/123 (87%), Gaps = 3/123 (2%)
Strand = Plus / Minus
Query: 664 tagagcttcatcggctggctgaacgggtaccgcacgcccaggtcggcgctcgtgttcttg 723
||||||||||| |||||| ||| |||||||||||||| ||||| ||| ||||||||
Sbjct: 666 tagagcttcataggctggtcgaaggggtaccgcacgccgaggtccttgct--tgttcttg 609
Query: 724 aacacccggatcggcacgtcgtccacgaagaacgcgatcatgttagaggttccagaggac 783
|||||||| |||||| ||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 608 aacacccgaatcggcgtgtcgtccacaaagaacgcgatcatg-tagaggttccagaggac 550
Query: 784 gga 786
|||
Sbjct: 549 gga 547
>gb|BU971930.1|BU971930 HB20B14r BC Hordeum vulgare subsp. vulgare cDNA clone HB20B14
5-PRIME, mRNA sequence
Length = 387
Score = 109 bits (55), Expect = 1e-022
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
||||||||||||||||||| ||| ||||||| |||||||||||||||| | || |||||
Sbjct: 257 gaagccgcggtaggaggcggagaacggcgcgtgggaccagtccgtcttcacccggccgcc 198
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggagtagagc 669
| || |||||||||||||||||||| |||||||||||||||
Sbjct: 197 ctgcgtggcccagtcgtcggcgttccagaggctggagtagagc 155
>gb|BG300583.1|BG300583 HVSMEb0017J11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017J11f, mRNA sequence
Length = 876
Score = 87.7 bits (44), Expect = 5e-016
Identities = 88/103 (85%)
Strand = Plus / Minus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
|||||| ||||| |||||| ||| ||||||| ||||||||| ||||| |||| |||||
Sbjct: 684 gaagccacggtaagaggcggagaacggcgcgtgggaccagtcggtcttgacgcgnccgcc 625
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggagtagagc 669
| || |||||||||||||||||||| |||||||||||||||
Sbjct: 624 ctgcgtggcccagtcgtcggcgttccagaggctggagtagagc 582
>gb|BF629710.1|BF629710 HVSMEb0013D21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013D21f, mRNA sequence
Length = 830
Score = 85.7 bits (43), Expect = 2e-015
Identities = 88/103 (85%)
Strand = Plus / Minus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
|||||| ||||| |||||| ||| ||||||| ||||||||| ||||| |||| |||||
Sbjct: 349 gaagccacggtaagaggcggagaacggcgcgtgggaccagtcggtcttgacgcggccgcc 290
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggagtagagc 669
| || |||||||||||||||||||| |||||||||||||||
Sbjct: 289 ctgcgtggcccagtcgtcggcgttccagaggctggagtagagc 247
>gb|BF626811.2|BF626811 HVSMEb0001G10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0001G10f, mRNA sequence
Length = 841
Score = 85.7 bits (43), Expect = 2e-015
Identities = 88/103 (85%)
Strand = Plus / Minus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
||||||||| |||||||| ||| || |||| ||||||||||||||| |||| |||||
Sbjct: 190 gaagccgcgataggaggccgagaacggggcgtgggaccagtccgtcttgacgcggccgcc 131
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggagtagagc 669
| || |||||||||||||||||||| |||||||||||||||
Sbjct: 130 ctgcgttgcccagtcgtcggcgttccagaggctggagtagagc 88
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 409 tcggtgcagtagttgtagat 428
||||||||||||||||||||
Sbjct: 372 tcggtgcagtagttgtagat 353
>gb|BG310036.1|BG310036 HVSMEc0016C04f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016C04f, mRNA sequence
Length = 831
Score = 85.7 bits (43), Expect = 2e-015
Identities = 88/103 (85%)
Strand = Plus / Minus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
|||||| ||||| |||||| ||| ||||||| ||||||||| ||||| |||| |||||
Sbjct: 681 gaagccacggtaagaggcggagaacggcgcgtgggaccagtcggtcttgacgcggccgcc 622
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggagtagagc 669
| || |||||||||||||||||||| |||||||||||||||
Sbjct: 621 ctgcgtggcccagtcgtcggcgttccagaggctggagtagagc 579
>gb|BQ468552.1|BQ468552 HM01J07T HM Hordeum vulgare subsp. vulgare cDNA clone HM01J07
5-PRIME, mRNA sequence
Length = 491
Score = 85.7 bits (43), Expect = 2e-015
Identities = 88/103 (85%)
Strand = Plus / Minus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
||||||||| |||||||| ||| || |||| ||||||||||||||| |||| |||||
Sbjct: 302 gaagccgcgataggaggccgagaacggggcgtgggaccagtccgtcttgacgcggccgcc 243
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggagtagagc 669
| || |||||||||||||||||||| |||||||||||||||
Sbjct: 242 ctgcgttgcccagtcgtcggcgttccagaggctggagtagagc 200
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 409 tcggtgcagtagttgtagat 428
||||||||||||||||||||
Sbjct: 484 tcggtgcagtagttgtagat 465
>gb|BF627738.2|BF627738 HVSMEb0005K17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0005K17f, mRNA sequence
Length = 831
Score = 83.8 bits (42), Expect = 8e-015
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 592 ggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttc 651
||||||| |||||||||||||||| | || ||||| | || ||||||||||||||||||
Sbjct: 666 ggcgcgtgggaccagtccgtcttcacccggccgccatgcgtggcccagtcgtcggcgttc 607
Query: 652 cacaggctggagtagagc 669
|| |||||||||||||||
Sbjct: 606 cagaggctggagtagagc 589
>gb|BF626739.2|BF626739 HVSMEb0001D16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0001D16f, mRNA sequence
Length = 844
Score = 81.8 bits (41), Expect = 3e-014
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 593 gcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttcc 652
|||||| ||||||||| ||||| |||||||||| | || |||||||||||||||||||
Sbjct: 669 gcgcgtgggaccagtcggtcttgacgcgcccgccctgcgtggcccagtcgtcggcgttcc 610
Query: 653 acaggctggagtagagc 669
| |||||||||||||||
Sbjct: 609 agaggctggagtagagc 593
>gb|CB877507.1|CB877507 HP05D02T HP Hordeum vulgare subsp. vulgare cDNA clone HP05D02
5-PRIME, mRNA sequence
Length = 632
Score = 79.8 bits (40), Expect = 1e-013
Identities = 87/103 (84%)
Strand = Plus / Minus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
||||||||| |||||| | ||| || |||| ||||||||||||||| |||| |||||
Sbjct: 440 gaagccgcgataggagnccgagaacggggcgtgggaccagtccgtcttgacgcggccgcc 381
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggagtagagc 669
| || |||||||||||||||||||| |||||||||||||||
Sbjct: 380 ctgcgttgcccagtcgtcggcgttccagaggctggagtagagc 338
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 409 tcggtgcagtagttgtagat 428
||||||||||||||||||||
Sbjct: 622 tcggtgcagtagttgtagat 603
>gb|AL500460.1|AL500460 AL500460 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06L16r 3', mRNA sequence
Length = 700
Score = 77.8 bits (39), Expect = 5e-013
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
||||||||||||||||||| || || |||| ||||||||| ||||| |||| || ||
Sbjct: 86 gaagccgcggtaggaggcggaaaacggagcgtgggaccagtcggtcttgacgcggccacc 145
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggagta 665
| ||||||||||||||||||||||| |||||||||||
Sbjct: 146 ctgtgtcgcccagtcgtcggcgttccagaggctggagta 184
>gb|BG309440.1|BG309440 HVSMEc0010E08f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0010E08f, mRNA sequence
Length = 788
Score = 77.8 bits (39), Expect = 5e-013
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 592 ggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttc 651
||||||| ||||||||| |||||| |||| ||||| | || ||||||||||||||||||
Sbjct: 647 ggcgcgtgggaccagtcggtcttcacgcgnccgccctgcgtggcccagtcgtcggcgttc 588
Query: 652 cacaggctggagtagagc 669
|| ||| |||||||||||
Sbjct: 587 cagaggttggagtagagc 570
>gb|AW982755.3|AW982755 HVSMEg0004C03f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004C03f, mRNA sequence
Length = 556
Score = 77.8 bits (39), Expect = 5e-013
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
||||||||||||||||||| || || |||| ||||||||| ||||| |||| || ||
Sbjct: 411 gaagccgcggtaggaggcggaaaacggagcgtgggaccagtcggtcttgacgcggccacc 352
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggagta 665
| ||||||||||||||||||||||| |||||||||||
Sbjct: 351 ctgtgtcgcccagtcgtcggcgttccagaggctggagta 313
>gb|BQ469314.1|BQ469314 HM04C11r HM Hordeum vulgare subsp. vulgare cDNA clone HM04C11
5-PRIME, mRNA sequence
Length = 604
Score = 77.8 bits (39), Expect = 5e-013
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
||||||||||||||||||| || || |||| ||||||||| ||||| |||| || ||
Sbjct: 222 gaagccgcggtaggaggcggaaaacggagcgtgggaccagtcggtcttgacgcggccacc 163
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggagta 665
| ||||||||||||||||||||||| |||||||||||
Sbjct: 162 ctgtgtcgcccagtcgtcggcgttccagaggctggagta 124
>gb|BQ661581.1|BQ661581 HM04C11u HM Hordeum vulgare subsp. vulgare cDNA clone HM04C11
3-PRIME, mRNA sequence
Length = 579
Score = 77.8 bits (39), Expect = 5e-013
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
||||||||||||||||||| || || |||| ||||||||| ||||| |||| || ||
Sbjct: 468 gaagccgcggtaggaggcggaaaacggagcgtgggaccagtcggtcttgacgcggccacc 527
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggagta 665
| ||||||||||||||||||||||| |||||||||||
Sbjct: 528 ctgtgtcgcccagtcgtcggcgttccagaggctggagta 566
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(XEA)
Length = 1174
Score = 77.8 bits (39), Expect = 5e-013
Identities = 87/103 (84%)
Strand = Plus / Minus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
|||||| ||||| |||||| ||| ||||||| ||||||||| ||||| |||| ||||
Sbjct: 690 gaagccacggtaagaggcggagaacggcgcgtgggaccagtcggtcttgacgcgggcgcc 631
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggagtagagc 669
| || |||||||||||||||||||| |||||||||||||||
Sbjct: 630 ctgcgtggcccagtcgtcggcgttccagaggctggagtagagc 588
>gb|BF257539.3|BF257539 HVSMEf0013D01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013D01f, mRNA sequence
Length = 542
Score = 73.8 bits (37), Expect = 8e-012
Identities = 109/133 (81%)
Strand = Plus / Minus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| ||| |||| |||| ||||||||||||| ||||| ||| |||||| |
Sbjct: 148 cgcaggcgtcggcgttgaagttgcggaaggaggcgacgaacggcgccttgctccagtcgg 89
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagct 670
|||| | || ||||| | || |||||||||||||||||||||||||| | ||| |||
Sbjct: 88 tcttgacccggccgccctgcgtggcccagtcgtcggcgttccacaggctcgcgtacagcc 29
Query: 671 tcatcggctggct 683
||||||||||||
Sbjct: 28 gcatcggctggct 16
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 409 tcggtgcagtagttgtagat 428
||||||||||||||||||||
Sbjct: 302 tcggtgcagtagttgtagat 283
>gb|BQ470845.1|BQ470845 HX04D09r HX Hordeum vulgare subsp. vulgare cDNA clone HX04D09
5-PRIME, mRNA sequence
Length = 619
Score = 73.8 bits (37), Expect = 8e-012
Identities = 109/133 (81%)
Strand = Plus / Minus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| ||| |||| |||| ||||||||||||| ||||| ||| |||||| |
Sbjct: 241 cgcaggcgtcggcgttgaagttgcggaaggaggcgacgaacggcgccttgctccagtcgg 182
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagct 670
|||| | || ||||| | || |||||||||||||||||||||||||| | ||| |||
Sbjct: 181 tcttgacccggccgccctgcgtggcccagtcgtcggcgttccacaggctcgcgtacagcc 122
Query: 671 tcatcggctggct 683
||||||||||||
Sbjct: 121 gcatcggctggct 109
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 409 tcggtgcagtagttgtagat 428
||||||||||||||||||||
Sbjct: 395 tcggtgcagtagttgtagat 376
>gb|BQ660118.1|BQ660118 HI01A16w HI Hordeum vulgare subsp. vulgare cDNA clone HI01A16
3-PRIME, mRNA sequence
Length = 545
Score = 73.8 bits (37), Expect = 8e-012
Identities = 109/133 (81%)
Strand = Plus / Plus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| ||| |||| |||| ||||||||||||| ||||| ||| |||||| |
Sbjct: 379 cgcaggcgtcggcgttgaagttgcggaaggaggcgacgaacggcgccttgctccagtcgg 438
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagct 670
|||| | || ||||| | || |||||||||||||||||||||||||| | ||| |||
Sbjct: 439 tcttgacccggccgccctgcgtggcccagtcgtcggcgttccacaggctcgcgtacagcc 498
Query: 671 tcatcggctggct 683
||||||||||||
Sbjct: 499 gcatcggctggct 511
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 409 tcggtgcagtagttgtagat 428
||||||||||||||||||||
Sbjct: 225 tcggtgcagtagttgtagat 244
>gb|BI778475.2|BI778475 EBro07_SQ003_G13_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ003_G13 5', mRNA sequence
Length = 525
Score = 73.8 bits (37), Expect = 8e-012
Identities = 109/133 (81%)
Strand = Plus / Minus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| ||| |||| |||| ||||||||||||| ||||| ||| |||||| |
Sbjct: 483 cgcaggcgtcggcgttgaagttgcggaaggaggcgacgaacggcgccttgctccagtcgg 424
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagct 670
|||| | || ||||| | || |||||||||||||||||||||||||| | ||| |||
Sbjct: 423 tcttgacccggccgccctgcgtggcccagtcgtcggcgttccacaggctcgcgtacagcc 364
Query: 671 tcatcggctggct 683
||||||||||||
Sbjct: 363 gcatcggctggct 351
>gb|BU988965.1|BU988965 HF19F01r HF Hordeum vulgare subsp. vulgare cDNA clone HF19F01
5-PRIME, mRNA sequence
Length = 444
Score = 73.8 bits (37), Expect = 8e-012
Identities = 109/133 (81%)
Strand = Plus / Minus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| ||| |||| |||| ||||||||||||| ||||| ||| |||||| |
Sbjct: 170 cgcaggcgtcggcgttgaagttgcggaaggaggcgacgaacggcgccttgctccagtcgg 111
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagct 670
|||| | || ||||| | || |||||||||||||||||||||||||| | ||| |||
Sbjct: 110 tcttgacccggccgccctgcgtggcccagtcgtcggcgttccacaggctcgcgtacagcc 51
Query: 671 tcatcggctggct 683
||||||||||||
Sbjct: 50 gcatcggctggct 38
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 409 tcggtgcagtagttgtagat 428
||||||||||||||||||||
Sbjct: 324 tcggtgcagtagttgtagat 305
>emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(XEB)
Length = 1226
Score = 73.8 bits (37), Expect = 8e-012
Identities = 109/133 (81%)
Strand = Plus / Minus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| ||| |||| |||| ||||||||||||| ||||| ||| |||||| |
Sbjct: 767 cgcaggcgtcggcgttgaagttgcggaaggaggcgacgaacggcgccttgctccagtcgg 708
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagct 670
|||| | || ||||| | || |||||||||||||||||||||||||| | ||| |||
Sbjct: 707 tcttgacccggccgccctgcgtggcccagtcgtcggcgttccacaggctcgcgtacagcc 648
Query: 671 tcatcggctggct 683
||||||||||||
Sbjct: 647 gcatcggctggct 635
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 409 tcggtgcagtagttgtagat 428
||||||||||||||||||||
Sbjct: 921 tcggtgcagtagttgtagat 902
>gb|AL500257.1|AL500257 AL500257 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK05L22r 3', mRNA sequence
Length = 313
Score = 67.9 bits (34), Expect = 5e-010
Identities = 121/147 (82%), Gaps = 5/147 (3%)
Strand = Plus / Plus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| ||||||||||| || ||||||| || || ||||| ||
Sbjct: 171 tcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcg---tatcgttcgcggtc 227
Query: 411 ggtgcagtagttgtagatggtgtagcggc-gcctgacgtcggccaggcggcggtactgcg 469
|||||||||||||||||||||| || | |||||| ||| ||||||||||||| ||
Sbjct: 228 tgtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcggcggtactncg 286
Query: 470 cggcgtcgaggtccctgaactccggct 496
||||||| |||||| |||||| ||||
Sbjct: 287 cggcgtccaggtcctggaactcgggct 313
>gb|AL500052.1|AL500052 AL500052 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04L04r 3', mRNA sequence
Length = 523
Score = 63.9 bits (32), Expect = 7e-009
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagc 669
|||||||||||||||||||| |||||||||||||||
Sbjct: 7 gcccagtcgtcggcgttccagaggctggagtagagc 42
>gb|AL500119.1|AL500119 AL500119 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04P11r 3', mRNA sequence
Length = 501
Score = 63.9 bits (32), Expect = 7e-009
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagc 669
|||||||||||||||||||| |||||||||||||||
Sbjct: 7 gcccagtcgtcggcgttccagaggctggagtagagc 42
>gb|AL500129.1|AL500129 AL500129 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK05A03r 3', mRNA sequence
Length = 439
Score = 63.9 bits (32), Expect = 7e-009
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagc 669
|||||||||||||||||||| |||||||||||||||
Sbjct: 7 gcccagtcgtcggcgttccagaggctggagtagagc 42
>gb|AL500197.1|AL500197 AL500197 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK05G07r 3', mRNA sequence
Length = 214
Score = 63.9 bits (32), Expect = 7e-009
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagc 669
|||||||||||||||||||| |||||||||||||||
Sbjct: 7 gcccagtcgtcggcgttccagaggctggagtagagc 42
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 92,467
Number of Sequences: 312970
Number of extensions: 92467
Number of successful extensions: 25165
Number of sequences better than 0.5: 92
Number of HSP's better than 0.5 without gapping: 91
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24935
Number of HSP's gapped (non-prelim): 171
length of query: 786
length of database: 175,134,539
effective HSP length: 19
effective length of query: 767
effective length of database: 169,188,109
effective search space: 129767279603
effective search space used: 129767279603
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)