BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591248.2.1
(1222 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI779097.2|BI779097 EBro01_SQ002_P16_R root, 3 week, hyd... 307 5e-082
gb|BQ664895.1|BQ664895 HX01E21w HX Hordeum vulgare subsp. v... 208 3e-052
gb|BM377965.2|BM377965 EBem04_SQ004_L21_R embryo, 12 DPA, n... 206 1e-051
gb|BQ469858.1|BQ469858 HX01B06T HX Hordeum vulgare subsp. v... 204 5e-051
gb|CB858324.1|CB858324 HI06J16w HI Hordeum vulgare subsp. v... 188 3e-046
gb|BU974073.1|BU974073 HB26N03r BC Hordeum vulgare subsp. v... 170 7e-041
gb|AJ461943.1|AJ461943 AJ461943 S00002 Hordeum vulgare subs... 165 4e-039
gb|BQ664840.1|BQ664840 HX01B06w HX Hordeum vulgare subsp. v... 161 7e-038
gb|BQ469939.1|BQ469939 HX01E21T HX Hordeum vulgare subsp. v... 137 1e-030
gb|BI956376.1|BI956376 HVSMEn0002P20f Hordeum vulgare rachi... 117 9e-025
gb|BJ464625.1|BJ464625 BJ464625 K. Sato unpublished cDNA li... 60 2e-007
gb|CA023829.1|CA023829 HZ47I13r HZ Hordeum vulgare subsp. v... 58 7e-007
gb|CK123410.1|CK123410 BES1824103p13 BES1824 Hordeum vulgar... 58 7e-007
gb|BQ470997.1|BQ470997 HX04K17r HX Hordeum vulgare subsp. v... 56 3e-006
gb|BQ665678.1|BQ665678 HX04K17u HX Hordeum vulgare subsp. v... 56 3e-006
gb|CA027804.1|CA027804 HZ60B10r HZ Hordeum vulgare subsp. v... 56 3e-006
gb|BM099274.2|BM099274 EBes01_SQ002_M04_R embryo sac, 4-6 D... 54 1e-005
gb|BI960651.1|BI960651 HVSMEn0025K02f Hordeum vulgare rachi... 50 2e-004
gb|BQ460303.1|BQ460303 HA06K13r HA Hordeum vulgare subsp. v... 46 0.003
gb|BU984063.1|BU984063 HA31O02r HA Hordeum vulgare subsp. v... 46 0.003
gb|CK122715.1|CK122715 BES1824105i22 BES1824 Hordeum vulgar... 46 0.003
gb|CK123273.1|CK123273 BES1824103c09 BES1824 Hordeum vulgar... 46 0.003
gb|CK125333.1|CK125333 BES1824107l12 BES1824 Hordeum vulgar... 46 0.003
gb|CK125884.1|CK125884 BES1824111A2a04 BES1824 Hordeum vulg... 46 0.003
gb|BJ467008.1|BJ467008 BJ467008 K. Sato unpublished cDNA li... 42 0.043
gb|BU985192.1|BU985192 HF06G12r HF Hordeum vulgare subsp. v... 42 0.043
>gb|BI779097.2|BI779097 EBro01_SQ002_P16_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ002_P16 5', mRNA sequence
Length = 351
Score = 307 bits (155), Expect = 5e-082
Identities = 302/351 (86%)
Strand = Plus / Minus
Query: 567 taccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctgccgc 626
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 351 taccccaccatgtacgacatgcgcagcgggttgtcgcccaggatgtagtccacctggcgc 292
Query: 627 ttggccacgcggcggagctgcaccggcgacgccgacgacgagccgcacgagacgcgcccg 686
||||| |||||||||||| |||||||| || || || |||||||| || ||| ||
Sbjct: 291 ttggcgacgcggcggagcacgaccggcgaggcggaggagccgccgcacggcacccgcacg 232
Query: 687 ccggcgtggctcaggtagttggagtaggccagcaggaggaacgacagctgcgtcacgtgc 746
||||||||| |||||||| |||||| |||||||||||||||||| ||||||||||
Sbjct: 231 ttggcgtggctggcgtagttggcgtaggcgagcaggaggaacgacagcgacgtcacgtgc 172
Query: 747 tgcatgttgctgctcccgaccttgaacagcagcccgcctggggagtactggatctggggg 806
|||||||||||| | || |||||||||||||| || ||||||||||||| ||||||||||
Sbjct: 171 tgcatgttgctgttgcccaccttgaacagcaggccacctggggagtactcgatctggggg 112
Query: 807 tgattggagatgccggggaggagggtgcacatgaagttgtcggcgttgacacggaaggac 866
|| |||||||| || |||||||||||||| ||||||||||||||||| || |||| |||
Sbjct: 111 tggttggagatccccgggaggagggtgcagatgaagttgtcggcgttcacctggaacgac 52
Query: 867 tggaagtactcgtccttccccatcagaacctcctttgagatgaggacgttg 917
| |||| | |||||| |||||||| |||||||| |||||||||| ||||
Sbjct: 51 ttgaagaaggagtccttgcccatcagcacctccttggagatgaggatgttg 1
>gb|BQ664895.1|BQ664895 HX01E21w HX Hordeum vulgare subsp. vulgare cDNA clone HX01E21
3-PRIME, mRNA sequence
Length = 513
Score = 208 bits (105), Expect = 3e-052
Identities = 189/217 (87%)
Strand = Plus / Plus
Query: 292 ggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtgg 351
||||||| || || |||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 297 ggttggggtgggcggagaagtaggcgaggaggcccagcagcggggcgttgatgtaggtgg 356
Query: 352 tgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagtcgtcggtgg 411
||||||||||||||||||| ||||| ||||||||||||||| |||| | || | |||
Sbjct: 357 tgggctcggactgctggaagacggcccgcgcgtcggggaagttgtcgctggtgttgctgg 416
Query: 412 gcccgcccacgacggcgcccacgagcaggttcgggttgggcgccgggctggtgtagtagg 471
|||||||||| |||||||| ||||||||||| ||||||||||| |||| |||||| |
Sbjct: 417 gcccgcccaccacggcgccgacgagcaggttggggttgggcgcgctgctgccgtagtatg 476
Query: 472 cggcgccggccttgcagccgatccgcgccgggtgcgc 508
| |||||||||||||| ||||||||||||||||||||
Sbjct: 477 ccgcgccggccttgcatccgatccgcgccgggtgcgc 513
>gb|BM377965.2|BM377965 EBem04_SQ004_L21_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ004_L21 5', mRNA sequence
Length = 477
Score = 206 bits (104), Expect = 1e-051
Identities = 134/144 (93%)
Strand = Plus / Minus
Query: 283 actcggctgggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttga 342
||||||| |||||||| || || |||||||||||||||||||||||||| ||||||||||
Sbjct: 144 actcggcggggttggggtgggctgagaagtaggcgaggaggcccatgagaggcgcgttga 85
Query: 343 tgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagt 402
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 84 tgtacgtggtgggctcggactgctggaatacggcgcgcgcgtcggggaaggcgtcggtgg 25
Query: 403 cgtcggtgggcccgcccacgacgg 426
||||||| |||||||| |||||||
Sbjct: 24 cgtcggtcggcccgccgacgacgg 1
>gb|BQ469858.1|BQ469858 HX01B06T HX Hordeum vulgare subsp. vulgare cDNA clone HX01B06
5-PRIME, mRNA sequence
Length = 592
Score = 204 bits (103), Expect = 5e-051
Identities = 130/139 (93%)
Strand = Plus / Minus
Query: 1083 agtagcaggggcacaccgccgcgtggaggctgctgctgtaggggccccggtacttgtccg 1142
||||||||||||||||||||||||| |||||||||||||||| || ||||||| ||||||
Sbjct: 592 agtagcaggggcacaccgccgcgtgcaggctgctgctgtaggcgcgccggtacctgtccg 533
Query: 1143 cgaactcgaacacggcgacggcgcggtcgaggaggcgcttggagtaggcggggtcggcgt 1202
|||||| ||||||||| | |||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 532 cgaacttgaacacggccatggcgcggtcgaggaggcgctgggagtagacggggtcggcgt 473
Query: 1203 cgcggaagacgatggagcc 1221
|||||||||||||||||||
Sbjct: 472 cgcggaagacgatggagcc 454
>gb|CB858324.1|CB858324 HI06J16w HI Hordeum vulgare subsp. vulgare cDNA clone HI06J16
3-PRIME, mRNA sequence
Length = 373
Score = 188 bits (95), Expect = 3e-046
Identities = 119/127 (93%)
Strand = Plus / Plus
Query: 283 actcggctgggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttga 342
||||||| |||||||| || || |||||||||||||||||||||||||| ||||||||||
Sbjct: 244 actcggcggggttggggtgggctgagaagtaggcgaggaggcccatgagaggcgcgttga 303
Query: 343 tgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagt 402
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 304 tgtacgtggtgggctcggactgctggaatacggcgcgcgcgtcggggaaggcgtcggtgg 363
Query: 403 cgtcggt 409
|||||||
Sbjct: 364 cgtcggt 370
>gb|BU974073.1|BU974073 HB26N03r BC Hordeum vulgare subsp. vulgare cDNA clone HB26N03
5-PRIME, mRNA sequence
Length = 445
Score = 170 bits (86), Expect = 7e-041
Identities = 104/110 (94%)
Strand = Plus / Minus
Query: 283 actcggctgggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttga 342
||||||| |||||||| || || |||||||||||||||||||||||||| ||||||||||
Sbjct: 120 actcggcggggttggggtgggctgagaagtaggcgaggaggcccatgagaggcgcgttga 61
Query: 343 tgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcggggaag 392
|||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 60 tgtacgtggtgggctcggactgctggaatacggcgcgcgcgtcggggaag 11
>gb|AJ461943.1|AJ461943 AJ461943 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200058H03F1, mRNA sequence
Length = 300
Score = 165 bits (83), Expect = 4e-039
Identities = 143/163 (87%)
Strand = Plus / Minus
Query: 292 ggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtgg 351
||||||| || || |||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 179 ggttggggtgggcggagaagtaggcgaggaggcccagcagcggggcgttgatgtaggtgg 120
Query: 352 tgggctcggactgctggaacacggcgcgcgcgtcggggaaggcgtcggagtcgtcggtgg 411
||||||||||||||||||| ||||| ||||||||||||||| |||| | || | |||
Sbjct: 119 tgggctcggactgctggaagacggcccgcgcgtcggggaagttgtcgctggtgttgctgg 60
Query: 412 gcccgcccacgacggcgcccacgagcaggttcgggttgggcgc 454
|||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 59 gcccgcccaccacggcgccgacgagcaggttggggttgggcgc 17
>gb|BQ664840.1|BQ664840 HX01B06w HX Hordeum vulgare subsp. vulgare cDNA clone HX01B06
3-PRIME, mRNA sequence
Length = 424
Score = 161 bits (81), Expect = 7e-038
Identities = 99/105 (94%)
Strand = Plus / Plus
Query: 283 actcggctgggttgggatgtgccgagaagtaggcgaggaggcccatgagcggcgcgttga 342
||||||| |||||||| || || |||||||||||||||||||||||||| ||||||||||
Sbjct: 320 actcggcggggttggggtgggctgagaagtaggcgaggaggcccatgagaggcgcgttga 379
Query: 343 tgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcgg 387
|||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 380 tgtacgtggtgggctcggactgctggaatacggcgcgcgcgtcgg 424
>gb|BQ469939.1|BQ469939 HX01E21T HX Hordeum vulgare subsp. vulgare cDNA clone HX01E21
5-PRIME, mRNA sequence
Length = 403
Score = 137 bits (69), Expect = 1e-030
Identities = 102/113 (90%)
Strand = Plus / Minus
Query: 1109 aggctgctgctgtaggggccccggtacttgtccgcgaactcgaacacggcgacggcgcgg 1168
|||||| ||||||| | || |||||||||||||||||||||||||||| || ||| |||
Sbjct: 403 aggctggtgctgtacgcaccacggtacttgtccgcgaactcgaacacggagatggctcgg 344
Query: 1169 tcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacgatggagcc 1221
|| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 343 tcaagcaggcgcttggagtaggcggggtcggcctcgcggaagacgatggagcc 291
>gb|BI956376.1|BI956376 HVSMEn0002P20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0002P20f, mRNA sequence
Length = 829
Score = 117 bits (59), Expect = 9e-025
Identities = 95/107 (88%)
Strand = Plus / Minus
Query: 489 ccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggatccgc 548
||||||| |||||||||||||||||| ||||| | |||||| ||||||||||||||||
Sbjct: 107 ccgatcctcgccgggtgcgccgccaccgacgggatggagctgccgcggtggtggatccgg 48
Query: 549 cgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgg 595
||||||||||||| |||||| || |||||||| ||||| ||||||||
Sbjct: 47 cgcgggaaccgcgggccgtagccgaccatgtaggacatgcgcagcgg 1
>gb|BJ464625.1|BJ464625 BJ464625 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35i04 5', mRNA sequence
Length = 385
Score = 60.0 bits (30), Expect = 2e-007
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 896 ctcctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgat 955
|||||| || || ||||| |||| | |||| |||||||||||||| ||||||||||||||
Sbjct: 344 ctccttggaaataaggacattgaggncggcatgcttgttgtcccacccgaactcgttgat 285
Query: 956 g 956
|
Sbjct: 284 g 284
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 1049 cacagcagctcgtcctggtatccggagtagtcgcagtagcaggggca 1095
||||||||||| |||||||||||| | ||||||||||| |||||||
Sbjct: 193 cacagcagctcatcctggtatccgttgaagtcgcagtagaaggggca 147
>gb|CA023829.1|CA023829 HZ47I13r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47I13
5-PRIME, mRNA sequence
Length = 460
Score = 58.0 bits (29), Expect = 7e-007
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 499 ccgggtgcgccgccacggacggcagcgagctggcgcggtggtggatccgccgcgggaacc 558
||||||||||||| ||||| ||||||||| ||| |||||||| | | | |||| ||
Sbjct: 389 ccgggtgcgccgcgacggagggcagcgaggaggcccggtggtgcagcttcttcgggtact 330
Query: 559 gcgcgccgtaccccaccatgtacgacatccgcagcgggttg 599
|||||||||||||||||||||||||| | || |||||||
Sbjct: 329 tggcgccgtaccccaccatgtacgacatgcccatcgggttg 289
>gb|CK123410.1|CK123410 BES1824103p13 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P133 5-PRIME, mRNA sequence
Length = 579
Score = 58.0 bits (29), Expect = 7e-007
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 499 ccgggtgcgccgccacggacggcagcgagctggcgcggtggtggatccgccgcgggaacc 558
||||||||||||| ||||| ||||||||| ||| |||||||| | | | |||| ||
Sbjct: 202 ccgggtgcgccgcgacggagggcagcgaggaggcccggtggtgcagcttcttcgggtact 143
Query: 559 gcgcgccgtaccccaccatgtacgacatccgcagcgggttg 599
|||||||||||||||||||||||||| | || |||||||
Sbjct: 142 tggcgccgtaccccaccatgtacgacatgcccatcgggttg 102
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 411 ggcccgcccacgacggcgcccacgagcaggttcgggttgg 450
|||||||||||||||||||| ||| ||| |||||||||||
Sbjct: 290 ggcccgcccacgacggcgccgacgtgcacgttcgggttgg 251
>gb|BQ470997.1|BQ470997 HX04K17r HX Hordeum vulgare subsp. vulgare cDNA clone HX04K17
5-PRIME, mRNA sequence
Length = 627
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1052 agcagctcgtcctggtatccggagtagtcgcagtagcaggggca 1095
||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 272 agcagctcgtcctggtatccggagtaggaacagtagtaggggca 229
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 920 gccggcgtgcttgttgtcccagccgaa 946
||||||||||||||||||||| |||||
Sbjct: 402 gccggcgtgcttgttgtcccatccgaa 376
>gb|BQ665678.1|BQ665678 HX04K17u HX Hordeum vulgare subsp. vulgare cDNA clone HX04K17
3-PRIME, mRNA sequence
Length = 517
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 411 ggcccgcccacgacggcgcccacgagcaggttcgggttgg 450
|||||||||||||||||||| ||| ||| |||||||||||
Sbjct: 400 ggcccgcccacgacggcgccgacgtgcacgttcgggttgg 439
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 499 ccgggtgcgccgccacggacggcagcgag 527
||||||||||||| ||||| |||||||||
Sbjct: 488 ccgggtgcgccgcgacggagggcagcgag 516
>gb|CA027804.1|CA027804 HZ60B10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60B10
5-PRIME, mRNA sequence
Length = 408
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 411 ggcccgcccacgacggcgcccacgagcaggttcgggttgg 450
|||||||||||||||||||| ||| ||| |||||||||||
Sbjct: 172 ggcccgcccacgacggcgccgacgtgcacgttcgggttgg 133
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 499 ccgggtgcgccgccacggacggcagcgagctggcgcggtggtg 541
||||||||||||| ||||| ||||||||| ||| ||||||||
Sbjct: 84 ccgggtgcgccgcgacggagggcagcgaggaggcccggtggtg 42
>gb|BM099274.2|BM099274 EBes01_SQ002_M04_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ002_M04 5', mRNA sequence
Length = 464
Score = 54.0 bits (27), Expect = 1e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 561 gcgccgtaccccaccatgtacgacatccgcagcgggttg 599
|||||||||||||||||||||||||| | || |||||||
Sbjct: 433 gcgccgtaccccaccatgtacgacatgcccatcgggttg 395
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 920 gccggcgtgcttgttgtcccagccgaa 946
||||||||||||||||||||| |||||
Sbjct: 76 gccggcgtgcttgttgtcccatccgaa 50
>gb|BI960651.1|BI960651 HVSMEn0025K02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025K02f, mRNA sequence
Length = 632
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 410 gggcccgcccacgacggcgcccacgagcaggttcgggttgg 450
||||||||| |||| |||||||||||||| ||| |||||||
Sbjct: 458 gggcccgccgacgatggcgcccacgagcacgttggggttgg 418
>gb|BQ460303.1|BQ460303 HA06K13r HA Hordeum vulgare subsp. vulgare cDNA clone HA06K13
5-PRIME, mRNA sequence
Length = 581
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 411 ggcccgcccacgacggcgcccacgagcaggttcgggttg 449
|||||||| |||| |||||| |||||||||||||||||
Sbjct: 248 ggcccgccgacgatggcgccgtcgagcaggttcgggttg 210
>gb|BU984063.1|BU984063 HA31O02r HA Hordeum vulgare subsp. vulgare cDNA clone HA31O02
5-PRIME, mRNA sequence
Length = 477
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 411 ggcccgcccacgacggcgcccacgagcaggttcgggttg 449
|||||||| |||| |||||| |||||||||||||||||
Sbjct: 205 ggcccgccgacgatggcgccgtcgagcaggttcgggttg 167
>gb|CK122715.1|CK122715 BES1824105i22 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I225 5-PRIME, mRNA sequence
Length = 776
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 411 ggcccgcccacgacggcgcccacgagcaggttcgggttg 449
|||||||| |||| |||||| |||||||||||||||||
Sbjct: 279 ggcccgccgacgatggcgccgtcgagcaggttcgggttg 241
>gb|CK123273.1|CK123273 BES1824103c09 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010C093 5-PRIME, mRNA sequence
Length = 594
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 411 ggcccgcccacgacggcgcccacgagcaggttcgggttg 449
|||||||| |||| |||||| |||||||||||||||||
Sbjct: 336 ggcccgccgacgatggcgccgtcgagcaggttcgggttg 298
>gb|CK125333.1|CK125333 BES1824107l12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010L127 5-PRIME, mRNA sequence
Length = 858
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 411 ggcccgcccacgacggcgcccacgagcaggttcgggttg 449
|||||||| |||| |||||| |||||||||||||||||
Sbjct: 55 ggcccgccgacgatggcgccgtcgagcaggttcgggttg 17
>gb|CK125884.1|CK125884 BES1824111A2a04 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010A0411 5-PRIME, mRNA sequence
Length = 748
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 411 ggcccgcccacgacggcgcccacgagcaggttcgggttg 449
|||||||| |||| |||||| |||||||||||||||||
Sbjct: 465 ggcccgccgacgatggcgccgtcgagcaggttcgggttg 427
>gb|BJ467008.1|BJ467008 BJ467008 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35i04 3', mRNA sequence
Length = 786
Score = 42.1 bits (21), Expect = 0.043
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 562 cgccgtaccccaccatgtacgacat 586
|||||||||| ||||||||||||||
Sbjct: 661 cgccgtacccgaccatgtacgacat 685
>gb|BU985192.1|BU985192 HF06G12r HF Hordeum vulgare subsp. vulgare cDNA clone HF06G12
5-PRIME, mRNA sequence
Length = 615
Score = 42.1 bits (21), Expect = 0.043
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 562 cgccgtaccccaccatgtacgacat 586
|||||||||| ||||||||||||||
Sbjct: 195 cgccgtacccgaccatgtacgacat 171
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 189,344
Number of Sequences: 312970
Number of extensions: 189344
Number of successful extensions: 56893
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56828
Number of HSP's gapped (non-prelim): 65
length of query: 1222
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1203
effective length of database: 169,188,109
effective search space: 203533295127
effective search space used: 203533295127
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)