BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2590996.2.1
(1086 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV833284.1|AV833284 AV833284 K. Sato unpublished cDNA li... 363 8e-099
gb|BJ463253.1|BJ463253 BJ463253 K. Sato unpublished cDNA li... 321 3e-086
gb|BM816260.1|BM816260 HC113E04_SK.ab1 HC Hordeum vulgare s... 246 1e-063
gb|BJ467287.1|BJ467287 BJ467287 K. Sato unpublished cDNA li... 210 7e-053
gb|BM816261.1|BM816261 HC113F04_SK.ab1 HC Hordeum vulgare s... 149 2e-034
gb|AL505675.1|AL505675 AL505675 Hordeum vulgare Barke roots... 133 1e-029
gb|BQ763939.1|BQ763939 EBro03_SQ005_G23_R root, 3 week, wat... 131 5e-029
gb|CA022570.1|CA022570 HZ43K14r HZ Hordeum vulgare subsp. v... 129 2e-028
gb|BU999969.1|BU999969 HS16J06u HS Hordeum vulgare subsp. v... 111 5e-023
gb|BF255421.3|BF255421 HVSMEf0006N01f Hordeum vulgare seedl... 109 2e-022
gb|BU994619.1|BU994619 HM07K10r HM Hordeum vulgare subsp. v... 109 2e-022
gb|CB880150.1|CB880150 HM05K10w HM Hordeum vulgare subsp. v... 109 2e-022
gb|BQ768134.1|BQ768134 EBro08_SQ010_E19_R root, 3 week, dro... 86 3e-015
gb|BM816841.1|BM816841 HB105A11_SK.ab1 HB Hordeum vulgare s... 82 4e-014
gb|CA016572.1|CA016572 HV06P19u HV Hordeum vulgare subsp. v... 82 4e-014
gb|CA016687.1|CA016687 HV06O20u HV Hordeum vulgare subsp. v... 82 4e-014
gb|CA016852.1|CA016852 HV06B13u HV Hordeum vulgare subsp. v... 82 4e-014
gb|BF622731.2|BF622731 HVSMEa0008E02f Hordeum vulgare seedl... 78 7e-013
gb|BF260887.2|BF260887 HVSMEf0023D07f Hordeum vulgare seedl... 76 3e-012
gb|CA010560.1|CA010560 HT09K12u HT Hordeum vulgare subsp. v... 74 1e-011
gb|CA019620.1|CA019620 HV12J05r HV Hordeum vulgare subsp. v... 74 1e-011
gb|BF065670.2|BF065670 HV_CEb0013E24f Hordeum vulgare seedl... 72 4e-011
gb|BM442817.2|BM442817 EBro02_SQ001_G03_R root, 3 week, hyd... 72 4e-011
gb|CA016523.1|CA016523 HV08I24u HV Hordeum vulgare subsp. v... 72 4e-011
gb|CA018416.1|CA018416 HV08I24r HV Hordeum vulgare subsp. v... 72 4e-011
gb|AL499707.1|AL499707 AL499707 Hordeum vulgare Barke etiol... 70 2e-010
gb|BF628779.2|BF628779 HVSMEb0008B22f Hordeum vulgare seedl... 70 2e-010
gb|BF628789.2|BF628789 HVSMEb0008D18f Hordeum vulgare seedl... 70 2e-010
gb|BQ761443.1|BQ761443 EBro07_SQ001_G07_R root, 3 week, red... 70 2e-010
gb|AV932146.1|AV932146 AV932146 K. Sato unpublished cDNA li... 68 7e-010
gb|AV934990.1|AV934990 AV934990 K. Sato unpublished cDNA li... 68 7e-010
gb|BJ470840.1|BJ470840 BJ470840 K. Sato unpublished cDNA li... 68 7e-010
gb|BJ473519.1|BJ473519 BJ473519 K. Sato unpublished cDNA li... 68 7e-010
gb|BJ475648.1|BJ475648 BJ475648 K. Sato unpublished cDNA li... 68 7e-010
gb|BF267582.3|BF267582 HV_CEa0018F10f Hordeum vulgare seedl... 64 1e-008
gb|CA015702.1|CA015702 HV12J05u HV Hordeum vulgare subsp. v... 64 1e-008
emb|AJ234486.1|HVU234486 Hordeum vulgare genomic DNA fragme... 60 2e-007
gb|BE214720.2|BE214720 HV_CEb0004F12f Hordeum vulgare seedl... 56 3e-006
gb|BM444331.1|BM444331 EBem09_SQ004_N12_R embryo, 1 Day ger... 56 3e-006
gb|CA019923.1|CA019923 HV13L17r HV Hordeum vulgare subsp. v... 56 3e-006
gb|BF260942.2|BF260942 HVSMEf0023F14f Hordeum vulgare seedl... 52 4e-005
gb|BQ768447.1|BQ768447 EBro08_SQ011_B19_R root, 3 week, dro... 48 6e-004
gb|BQ662175.1|BQ662175 HR01O04u HR Hordeum vulgare subsp. v... 46 0.002
gb|BF262509.1|BF262509 HV_CEa0004C17f Hordeum vulgare seedl... 44 0.010
gb|BU994136.1|BU994136 HM05N21r HM Hordeum vulgare subsp. v... 44 0.010
gb|CB880799.1|CB880799 HM07N21w HM Hordeum vulgare subsp. v... 44 0.010
gb|BF260299.1|BF260299 HVSMEf0021K03f Hordeum vulgare seedl... 40 0.15
gb|BF253477.2|BF253477 HVSMEf0001A18f Hordeum vulgare seedl... 40 0.15
gb|CB879235.1|CB879235 HP11G23T HP Hordeum vulgare subsp. v... 40 0.15
>gb|AV833284.1|AV833284 AV833284 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags5b03, mRNA sequence
Length = 671
Score = 363 bits (183), Expect = 8e-099
Identities = 486/587 (82%)
Strand = Plus / Minus
Query: 283 ttgcgcatagaccgtccgtcaggccctgcagcggccacggcgctgtccctgagttcagtc 342
|||||||| |||| |||| |||| | ||||| |||||||||||| |||| ||| || |
Sbjct: 656 ttgcgcatggaccttccgccaggacgtgcagaggccacggcgctctcccagagctccagc 597
Query: 343 acgcgccggagcatctcttgccctttctccccctccatggcctcccgtatgagcgactct 402
||||| || ||||||| |||| || || ||||||||||||||||||||||| | |||
Sbjct: 596 acgcgtcgtctcatctctcgccccttgtctccctccatggcctcccgtatgagggcctcc 537
Query: 403 acctcgccccgctgtacatcgtcaccgatctcttttccgatgccccactcggtgcacttg 462
|||||| || || |||||||| |||||||| | |||||||||||||| |||||||||
Sbjct: 536 acctcggtcctcttcacatcgtccccgatctccatcccgatgccccactccgtgcacttg 477
Query: 463 tatcggcagttggtctgctgctcggcgaagaagggccagcacagcatgggaacgccgccg 522
|| || |||||||||||||| || |||||||||||||| |||| ||| ||||||||||||
Sbjct: 476 taacgacagttggtctgctgatccgcgaagaagggccaacacaccatcggaacgccgccg 417
Query: 523 caaatactctccagcgtggagttccacccggagtgcgtcaggaacacccccacggcatca 582
|| || | |||||||| |||||||||||||||||||| ||||| ||||| ||||| ||
Sbjct: 416 catatgccctccagcgacgagttccacccggagtgcgtgaggaagaccccaacggcctcc 357
Query: 583 tgctccagcacagctgcctgcgggcaccacgtagacagcatgcttcgtccctctgtcgca 642
||||||||||| ||||||||||||| || ||||||||||| || ||||| |||||
Sbjct: 356 tgctccagcaccttctcctgcgggcaccaggtcgacagcatgctccgcccctccgtcgcc 297
Query: 643 gctgagaactctggcggcagcccggcggagtcgccactcttgacgaggtccgggcgtacg 702
| ||||| || || || || |||| ||| | | |||||||||||| || || |||
Sbjct: 296 gtggagaattccggtggaagtgcggcctcatcgtcgcccttgacgaggtcaggccgcacg 237
Query: 703 ttccataggaagtagtagccggtgttggccagcccccacgcgaactcgaccagctgctcg 762
||||| |||||| |||||||||||||||||| |||||||||||||| | || |||||
Sbjct: 236 ttccacaggaaggcgtagccggtgttggccagtccccacgcgaactccagcatatgctcc 177
Query: 763 ttggacatcaccgtgatgctcccgaagttgacatacacaacggagcgcggcgcacggccg 822
||||||||||||| ||||||||| || || |||||||| |||||||| || | ||||||
Sbjct: 176 ttggacatcaccgcgatgctcccaaaatttacatacaccacggagcgtggtggccggccg 117
Query: 823 ttgagccaccggagcggcgcctcctgctccttccacaggttggaccc 869
| |||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 116 tcgagccaccggaggggcgcgtcctgctccttccataggttggaccc 70
>gb|BJ463253.1|BJ463253 BJ463253 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26i01 5', mRNA sequence
Length = 518
Score = 321 bits (162), Expect = 3e-086
Identities = 405/486 (83%)
Strand = Plus / Minus
Query: 384 ctcccgtatgagcgactctacctcgccccgctgtacatcgtcaccgatctcttttccgat 443
|||||||||||| | ||| |||||| || || |||||||| |||||||| | |||||
Sbjct: 518 ctcccgtatgagggcctccacctcggtcctcttcacatcgtccccgatctccatcccgat 459
Query: 444 gccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagca 503
||||||||| ||||||||||| || |||||||||||||| || |||||||||||||| ||
Sbjct: 458 gccccactccgtgcacttgtaacgacagttggtctgctgatccgcgaagaagggccaaca 399
Query: 504 cagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgcgtcag 563
|| ||| |||||||||||||| || | |||||||| |||||||||||||||||||| ||
Sbjct: 398 caccatcggaacgccgccgcatatgccctccagcgacgagttccacccggagtgcgtgag 339
Query: 564 gaacacccccacggcatcatgctccagcacagctgcctgcgggcaccacgtagacagcat 623
||| ||||| ||||| || ||||||||||| ||||||||||||| || ||||||||
Sbjct: 338 gaagaccccaacggcctcctgctccagcaccttctcctgcgggcaccaggtcgacagcat 279
Query: 624 gcttcgtccctctgtcgcagctgagaactctggcggcagcccggcggagtcgccactctt 683
||| || ||||| ||||| | ||||| || || || || |||| ||| | | |||
Sbjct: 278 gctccgcccctccgtcgccgtggagaattccggtggaagtgcggcctcatcgtcgccctt 219
Query: 684 gacgaggtccgggcgtacgttccataggaagtagtagccggtgttggccagcccccacgc 743
||||||||| || || |||||||| |||||| |||||||||||||||||| ||||||||
Sbjct: 218 gacgaggtcaggccgcacgttccacaggaaggcgtagccggtgttggccagtccccacgc 159
Query: 744 gaactcgaccagctgctcgttggacatcaccgtgatgctcccgaagttgacatacacaac 803
|||||| | || ||||| ||||||||||||| ||||||||| || || |||||||| ||
Sbjct: 158 gaactccagcatatgctccttggacatcaccgcgatgctcccaaaatttacatacaccac 99
Query: 804 ggagcgcggcgcacggccgttgagccaccggagcggcgcctcctgctccttccacaggtt 863
|||||| || | ||||||| |||||||||||| ||||| |||||||||||||| |||||
Sbjct: 98 ggagcgtggtggccggccgtcgagccaccggaggggcgcgtcctgctccttccataggtt 39
Query: 864 ggaccc 869
||||||
Sbjct: 38 ggaccc 33
>gb|BM816260.1|BM816260 HC113E04_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC113E04_SK.ab1 similar to
Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase, mRNA sequence
Length = 842
Score = 246 bits (124), Expect = 1e-063
Identities = 313/376 (83%)
Strand = Plus / Minus
Query: 439 ccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggc 498
|||||||||||||| ||||||||||| |||||||||||||||||||| | ||||||||||
Sbjct: 468 ccgatgccccactccgtgcacttgtaccggcagttggtctgctgctccgtgaagaagggc 409
Query: 499 cagcacagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgc 558
||||||| ||| || || |||||||| || | |||| || ||||||||||| || |||
Sbjct: 408 cagcacaccatcggcacaccgccgcagatgccttccaacgatgagttccacccagaatgc 349
Query: 559 gtcaggaacacccccacggcatcatgctccagcacagctgcctgcgggcaccacgtagac 618
|| ||||||||||| | ||| || ||||||||||| ||||||||||||| || ||
Sbjct: 348 gtgaggaacacccctatggcttcgtgctccagcaccttctcctgcgggcaccatgtcgag 289
Query: 619 agcatgcttcgtccctctgtcgcagctgagaactctggcggcagcccggcggagtcgcca 678
||||||||||| | |||||||| || |||||||| || || || ||||| ||||
Sbjct: 288 agcatgcttcggtcttctgtcgccgccgagaactccggtggaagtacggcgttgtcgtgt 229
Query: 679 ctcttgacgaggtccgggcgtacgttccataggaagtagtagccggtgttggccagcccc 738
| |||||| ||||| || ||||||||||| | |||| ||||||| ||||||||||||||
Sbjct: 228 cccttgacaaggtcaggccgtacgttccacaagaaggtgtagccgctgttggccagcccc 169
Query: 739 cacgcgaactcgaccagctgctcgttggacatcaccgtgatgctcccgaagttgacatac 798
|||||||| || | || |||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 168 cacgcgaattccagcaaatgctcgttggacatcaccgtgatgctcccgaaattgacgtac 109
Query: 799 acaacggagcgcggcg 814
|| ||||||| |||||
Sbjct: 108 accacggagcccggcg 93
Score = 54.0 bits (27), Expect = 1e-005
Identities = 46/51 (90%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 342 cacgcgccggagcatctcttg-ccctttctccccctccatggcctcccgta 391
||||||||| |||||||||| ||||| | |||||||||||||||||||||
Sbjct: 566 cacgcgccgtcgcatctcttggcccttcccccccctccatggcctcccgta 516
>gb|BJ467287.1|BJ467287 BJ467287 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26i01 3', mRNA sequence
Length = 441
Score = 210 bits (106), Expect = 7e-053
Identities = 274/330 (83%)
Strand = Plus / Plus
Query: 248 aggctaggagcacctcttcgatgagcctgtctacgttgcgcatagaccgtccgtcaggcc 307
||||||| | |||||| | |||||||| || || |||||||| |||| |||| |||| |
Sbjct: 112 aggctagcaacacctcgtggatgagccgatcaacattgcgcatggaccttccgccaggac 171
Query: 308 ctgcagcggccacggcgctgtccctgagttcagtcacgcgccggagcatctcttgccctt 367
||||| |||||||||||| |||| ||| || |||||| || ||||||| |||| |
Sbjct: 172 gtgcagaggccacggcgctctcccagagctccagcacgcgtcgtctcatctctcgcccct 231
Query: 368 tctccccctccatggcctcccgtatgagcgactctacctcgccccgctgtacatcgtcac 427
| || ||||||||||||||||||||||| | ||| |||||| || || |||||||| |
Sbjct: 232 tgtctccctccatggcctcccgtatgagggcctccacctcggtcctcttcacatcgtccc 291
Query: 428 cgatctcttttccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcgg 487
||||||| | |||||||||||||| ||||||||||| || |||||||||||||| || |
Sbjct: 292 cgatctccatcccgatgccccactccgtgcacttgtaacgacagttggtctgctgatccg 351
Query: 488 cgaagaagggccagcacagcatgggaacgccgccgcaaatactctccagcgtggagttcc 547
||||||||||||| |||| ||| |||||||||||||| || | |||||||| |||||||
Sbjct: 352 cgaagaagggccaacacaccatcggaacgccgccgcatatgccctccagcgacgagttcc 411
Query: 548 acccggagtgcgtcaggaacacccccacgg 577
||||||||||||| ||||| ||||| ||||
Sbjct: 412 acccggagtgcgtgaggaagaccccaacgg 441
>gb|BM816261.1|BM816261 HC113F04_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC113F04_SK.ab1 similar to
Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase, mRNA sequence
Length = 935
Score = 149 bits (75), Expect = 2e-034
Identities = 180/215 (83%)
Strand = Plus / Minus
Query: 439 ccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggc 498
|||||||||||||| ||||||||||| |||||||||||||||||||| | ||||||||||
Sbjct: 295 ccgatgccccactccgtgcacttgtaccggcagttggtctgctgctccgtgaagaagggc 236
Query: 499 cagcacagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgc 558
||||||| ||| || || |||||||| || | |||| || ||||||||||| || |||
Sbjct: 235 cagcacaccatcggcacaccgccgcagatgccttccaacgatgagttccacccagaatgc 176
Query: 559 gtcaggaacacccccacggcatcatgctccagcacagctgcctgcgggcaccacgtagac 618
|| ||||||||||| | ||| || ||||||||||| ||||||||||||| || ||
Sbjct: 175 gtgaggaacacccctatggcttcgtgctccagcaccttctcctgcgggcaccatgtcgag 116
Query: 619 agcatgcttcgtccctctgtcgcagctgagaactc 653
||||||||||| | |||||||| || ||||||||
Sbjct: 115 agcatgcttcggtcttctgtcgccgccgagaactc 81
Score = 60.0 bits (30), Expect = 2e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 342 cacgcgccggagcatctcttgccctttctccccctccatggcctcccgta 391
||||||||| |||||||||| || ||| |||||||||||||||||||||
Sbjct: 392 cacgcgccgtcgcatctcttggcccttccccccctccatggcctcccgta 343
>gb|AL505675.1|AL505675 AL505675 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09D01V 5', mRNA sequence
Length = 473
Score = 133 bits (67), Expect = 1e-029
Identities = 177/215 (82%)
Strand = Plus / Plus
Query: 439 ccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggc 498
|||||||||||||| ||||||||||| |||||||||||||||||||| | ||| ||||||
Sbjct: 255 ccgatgccccactccgtgcacttgtaccggcagttggtctgctgctccgtgaanaagggc 314
Query: 499 cagcacagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgc 558
||||||| ||| || || |||||||| || | |||| || ||||||||||| | |||
Sbjct: 315 cagcacaccatcggcacaccgccgcanatgccttccaacgatgagttccacccanaatgc 374
Query: 559 gtcaggaacacccccacggcatcatgctccagcacagctgcctgcgggcaccacgtagac 618
|| ||||||||||| | ||| || |||||||||| ||||||||||||| || ||
Sbjct: 375 gtgaggaacacccctatggcttcgngctccagcaccttctcctgcgggcaccatgtcgag 434
Query: 619 agcatgcttcgtccctctgtcgcagctgagaactc 653
||||||||||| | |||||||| || ||||||||
Sbjct: 435 agcatgcttcggtcttctgtcgccgccgagaactc 469
Score = 60.0 bits (30), Expect = 2e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 342 cacgcgccggagcatctcttgccctttctccccctccatggcctcccgta 391
||||||||| |||||||||| || ||| |||||||||||||||||||||
Sbjct: 158 cacgcgccgtcgcatctcttggcccttccccccctccatggcctcccgta 207
>gb|BQ763939.1|BQ763939 EBro03_SQ005_G23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_G23 5', mRNA sequence
Length = 594
Score = 131 bits (66), Expect = 5e-029
Identities = 117/134 (87%)
Strand = Plus / Minus
Query: 445 ccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagcac 504
||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 408 ccccactcgacgcacttgtaccggcagttggtctgctgctccgcgaagaagggccagcac 349
Query: 505 agcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgcgtcagg 564
||||| || ||||||||||| | ||||| ||| |||||||||||| ||||||||||
Sbjct: 348 agcatcggcacgccgccgcagagggcctccaccgtcgagttccacccgctgtgcgtcagg 289
Query: 565 aacacccccacggc 578
||||| | ||||||
Sbjct: 288 aacacgcacacggc 275
Score = 52.0 bits (26), Expect = 4e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 720 gccggtgttggccagcccccacgcgaactc 749
|||| |||||||||||||||||||||||||
Sbjct: 127 gccgctgttggccagcccccacgcgaactc 98
>gb|CA022570.1|CA022570 HZ43K14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43K14
5-PRIME, mRNA sequence
Length = 392
Score = 129 bits (65), Expect = 2e-028
Identities = 125/145 (86%)
Strand = Plus / Minus
Query: 896 gcacgttgttccgcaccgtcagctggagcgggcccacggtgtagatgggcggcaggagct 955
|||||||||| || |||| || |||||||| ||||| || ||||||| ||| |||||||
Sbjct: 369 gcacgttgttgcgagccgtaagatggagcggccccactgtatagatggacggtaggagct 310
Query: 956 tcgccatggcagcgagcagcgtcgcgtcgagctcgtcgaaggtgttgatgaccaccgccg 1015
| | ||||||| ||||||| | |||||| ||||||||||||||||||||||||||| |||
Sbjct: 309 tggacatggcatcgagcagtggcgcgtccagctcgtcgaaggtgttgatgaccacccccg 250
Query: 1016 acgcctgcgacatgccctccgtctc 1040
||||||| |||||||| |||||||
Sbjct: 249 acgcctgtgacatgccggccgtctc 225
>gb|BU999969.1|BU999969 HS16J06u HS Hordeum vulgare subsp. vulgare cDNA clone HS16J06
3-PRIME, mRNA sequence
Length = 550
Score = 111 bits (56), Expect = 5e-023
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 445 ccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagcac 504
||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 451 ccccactcgacgcacttgtaccggcagttggtctgctgctccgcgaagaagggccagcac 510
Query: 505 agcatgggaacgccgccgca 524
||||| || |||||||||||
Sbjct: 511 agcatcggcacgccgccgca 530
>gb|BF255421.3|BF255421 HVSMEf0006N01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006N01f, mRNA sequence
Length = 584
Score = 109 bits (55), Expect = 2e-022
Identities = 127/151 (84%)
Strand = Plus / Minus
Query: 461 tgtatcggcagttggtctgctgctcggcgaagaagggccagcacagcatgggaacgccgc 520
|||| |||| ||||||||||||||| ||||||||||||||||||||| | || || ||||
Sbjct: 301 tgtaccggctgttggtctgctgctccgcgaagaagggccagcacagcgtcggcaccccgc 242
Query: 521 cgcaaatactctccagcgtggagttccacccggagtgcgtcaggaacacccccacggcat 580
|||| | || |||| ||| ||||||||||| ||||||||||||||||| || || || |
Sbjct: 241 cgcacaggctgtccaccgtcgagttccaccctgagtgcgtcaggaacacgcctactgcct 182
Query: 581 catgctccagcacagctgcctgcgggcacca 611
| ||| |||||| || |||||||||||||
Sbjct: 181 cgtgcctcagcactgcctcctgcgggcacca 151
Score = 46.1 bits (23), Expect = 0.002
Identities = 94/117 (80%), Gaps = 3/117 (2%)
Strand = Plus / Minus
Query: 648 gaactctggcggcagcccggcggagtcgccactcttgacgaggtccgggcgtacgttcca 707
|||||| ||||||||| ||||| |||||| |||||||||||| || | | | ||||
Sbjct: 114 gaactccggcggcagcacggcgacgtcgcc---cttgacgaggtctggcctgatgatcca 58
Query: 708 taggaagtagtagccggtgttggccagcccccacgcgaactcgaccagctgctcgtt 764
|||||| | | |||| ||||||| ||||||||||| ||||||| |||| ||||||
Sbjct: 57 caggaaggactggccgctgttggctagcccccacgcaaactcgaggagctcctcgtt 1
>gb|BU994619.1|BU994619 HM07K10r HM Hordeum vulgare subsp. vulgare cDNA clone HM07K10
5-PRIME, mRNA sequence
Length = 603
Score = 109 bits (55), Expect = 2e-022
Identities = 127/151 (84%)
Strand = Plus / Minus
Query: 461 tgtatcggcagttggtctgctgctcggcgaagaagggccagcacagcatgggaacgccgc 520
|||| |||| ||||||||||||||| ||||||||||||||||||||| | || || ||||
Sbjct: 492 tgtaccggctgttggtctgctgctccgcgaagaagggccagcacagcgtcggcaccccgc 433
Query: 521 cgcaaatactctccagcgtggagttccacccggagtgcgtcaggaacacccccacggcat 580
|||| | || |||| ||| ||||||||||| ||||||||||||||||| || || || |
Sbjct: 432 cgcacaggctgtccaccgtcgagttccaccctgagtgcgtcaggaacacgcctactgcct 373
Query: 581 catgctccagcacagctgcctgcgggcacca 611
| ||| |||||| || |||||||||||||
Sbjct: 372 cgtgcctcagcactgcctcctgcgggcacca 342
Score = 77.8 bits (39), Expect = 7e-013
Identities = 125/153 (81%), Gaps = 3/153 (1%)
Strand = Plus / Minus
Query: 648 gaactctggcggcagcccggcggagtcgccactcttgacgaggtccgggcgtacgttcca 707
|||||| ||||||||| ||||| |||||| |||||||||||| || | | | ||||
Sbjct: 305 gaactccggcggcagcacggcgacgtcgcc---cttgacgaggtctggcctgatgatcca 249
Query: 708 taggaagtagtagccggtgttggccagcccccacgcgaactcgaccagctgctcgttgga 767
|||||| | | |||| ||||||| ||||||||||| ||||||| |||| |||||||
Sbjct: 248 caggaaggactggccgctgttggctagcccccacgcaaactcgaggagctcctcgttgct 189
Query: 768 catcaccgtgatgctcccgaagttgacatacac 800
||||||||||||||||||| |||| || |||||
Sbjct: 188 catcaccgtgatgctcccgtagttcacgtacac 156
>gb|CB880150.1|CB880150 HM05K10w HM Hordeum vulgare subsp. vulgare cDNA clone HM05K10
3-PRIME, mRNA sequence
Length = 622
Score = 109 bits (55), Expect = 2e-022
Identities = 127/151 (84%)
Strand = Plus / Plus
Query: 461 tgtatcggcagttggtctgctgctcggcgaagaagggccagcacagcatgggaacgccgc 520
|||| |||| ||||||||||||||| ||||||||||||||||||||| | || || ||||
Sbjct: 285 tgtaccggctgttggtctgctgctccgcgaagaagggccagcacagcgtcggcaccccgc 344
Query: 521 cgcaaatactctccagcgtggagttccacccggagtgcgtcaggaacacccccacggcat 580
|||| | || |||| ||| ||||||||||| ||||||||||||||||| || || || |
Sbjct: 345 cgcacaggctgtccaccgtcgagttccaccctgagtgcgtcaggaacacgcctactgcct 404
Query: 581 catgctccagcacagctgcctgcgggcacca 611
| ||| |||||| || |||||||||||||
Sbjct: 405 cgtgcctcagcactgcctcctgcgggcacca 435
Score = 77.8 bits (39), Expect = 7e-013
Identities = 125/153 (81%), Gaps = 3/153 (1%)
Strand = Plus / Plus
Query: 648 gaactctggcggcagcccggcggagtcgccactcttgacgaggtccgggcgtacgttcca 707
|||||| ||||||||| ||||| |||||| |||||||||||| || | | | ||||
Sbjct: 472 gaactccggcggcagcacggcgacgtcgcc---cttgacgaggtctggcctgatgatcca 528
Query: 708 taggaagtagtagccggtgttggccagcccccacgcgaactcgaccagctgctcgttgga 767
|||||| | | |||| ||||||| ||||||||||| ||||||| |||| |||||||
Sbjct: 529 caggaaggactggccgctgttggctagcccccacgcaaactcgaggagctcctcgttgct 588
Query: 768 catcaccgtgatgctcccgaagttgacatacac 800
||||||||||||||||||| |||| || |||||
Sbjct: 589 catcaccgtgatgctcccgtagttcacgtacac 621
>gb|BQ768134.1|BQ768134 EBro08_SQ010_E19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_E19 5', mRNA sequence
Length = 469
Score = 85.7 bits (43), Expect = 3e-015
Identities = 70/79 (88%)
Strand = Plus / Minus
Query: 730 gccagcccccacgcgaactcgaccagctgctcgttggacatcaccgtgatgctcccgaag 789
|||||||||||||||||||| |||| |||| |||||| ||| || |||||||| ||||||
Sbjct: 290 gccagcccccacgcgaactccaccatctgcgcgttggtcatgacggtgatgctgccgaag 231
Query: 790 ttgacatacacaacggagc 808
||||| ||||| |||||||
Sbjct: 230 ttgacgtacacgacggagc 212
>gb|BM816841.1|BM816841 HB105A11_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB105A11_SK.ab1 similar to
Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase, mRNA sequence
Length = 872
Score = 81.8 bits (41), Expect = 4e-014
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 466 cggcagttggtctgctgctcggcgaagaagggccagcacagcatgggaacgccgccgcaa 525
|||| ||| ||||||||||||||||||||||||||||| ||||| || |||||| |||
Sbjct: 622 cggctgtttgtctgctgctcggcgaagaagggccagcagagcatcggcacgccggcgccg 563
Query: 526 atactctccagcgtggagttccacccggagtgcgtca 562
| | ||||| | |||||||||||||| |||||||||
Sbjct: 562 agcccctccatcatggagttccacccgcagtgcgtca 526
Score = 60.0 bits (30), Expect = 2e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 704 tccataggaagtagtagccggtgttggccagcccccacgcgaactcgaccagct 757
|||| ||||||| ||||||| ||||||||| |||||||||||||| |||||||
Sbjct: 387 tccagaggaagtcgtagccgcagttggccagtccccacgcgaactccaccagct 334
>gb|CA016572.1|CA016572 HV06P19u HV Hordeum vulgare subsp. vulgare cDNA clone HV06P19
3-PRIME, mRNA sequence
Length = 447
Score = 81.8 bits (41), Expect = 4e-014
Identities = 83/97 (85%)
Strand = Plus / Plus
Query: 466 cggcagttggtctgctgctcggcgaagaagggccagcacagcatgggaacgccgccgcaa 525
|||| ||| ||||||||||||||||||||||||||||| ||||| || |||||| |||
Sbjct: 257 cggctgtttgtctgctgctcggcgaagaagggccagcagagcatcggcacgccggcgccg 316
Query: 526 atactctccagcgtggagttccacccggagtgcgtca 562
| | ||||| | |||||||||||||| |||||||||
Sbjct: 317 agcccctccatcatggagttccacccgcagtgcgtca 353
>gb|CA016687.1|CA016687 HV06O20u HV Hordeum vulgare subsp. vulgare cDNA clone HV06O20
3-PRIME, mRNA sequence
Length = 490
Score = 81.8 bits (41), Expect = 4e-014
Identities = 83/97 (85%)
Strand = Plus / Plus
Query: 466 cggcagttggtctgctgctcggcgaagaagggccagcacagcatgggaacgccgccgcaa 525
|||| ||| ||||||||||||||||||||||||||||| ||||| || |||||| |||
Sbjct: 257 cggctgtttgtctgctgctcggcgaagaagggccagcagagcatcggcacgccggcgccg 316
Query: 526 atactctccagcgtggagttccacccggagtgcgtca 562
| | ||||| | |||||||||||||| |||||||||
Sbjct: 317 agcccctccatcatggagttccacccgcagtgcgtca 353
>gb|CA016852.1|CA016852 HV06B13u HV Hordeum vulgare subsp. vulgare cDNA clone HV06B13
3-PRIME, mRNA sequence
Length = 365
Score = 81.8 bits (41), Expect = 4e-014
Identities = 83/97 (85%)
Strand = Plus / Plus
Query: 466 cggcagttggtctgctgctcggcgaagaagggccagcacagcatgggaacgccgccgcaa 525
|||| ||| ||||||||||||||||||||||||||||| ||||| || |||||| |||
Sbjct: 240 cggctgtttgtctgctgctcggcgaagaagggccagcagagcatcggcacgccggcgccg 299
Query: 526 atactctccagcgtggagttccacccggagtgcgtca 562
| | ||||| | |||||||||||||| |||||||||
Sbjct: 300 agcccctccatcatggagttccacccgcagtgcgtca 336
>gb|BF622731.2|BF622731 HVSMEa0008E02f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0008E02f, mRNA sequence
Length = 718
Score = 77.8 bits (39), Expect = 7e-013
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 730 gccagcccccacgcgaactcgaccagctgctcgttggacatcaccgtgatgctcccgaag 789
|||||||||||||||||||| |||| |||| |||||| ||| || |||||||| || |||
Sbjct: 360 gccagcccccacgcgaactccaccatctgcgcgttggtcatgacggtgatgctgccaaag 301
Query: 790 ttgacatacacaacggagc 808
||||| ||||| |||||||
Sbjct: 300 ttgacgtacacgacggagc 282
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 444 gccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagc 502
|||||||||| |||||| | | | |||||||||||| || ||||||||||| |||||||
Sbjct: 643 gccccactcgttgcactgggacctgcagttggtctgttggtcggcgaagaatggccagc 585
>gb|BF260887.2|BF260887 HVSMEf0023D07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0023D07f, mRNA sequence
Length = 826
Score = 75.8 bits (38), Expect = 3e-012
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 982 tcgagctcgtcgaaggtgttgatgaccaccgccgacgcctgcgacatgcc 1031
||||||||||| ||||||||||||| ||||||||||||||| ||||||||
Sbjct: 804 tcgagctcgtcaaaggtgttgatgatcaccgccgacgcctgagacatgcc 755
>gb|CA010560.1|CA010560 HT09K12u HT Hordeum vulgare subsp. vulgare cDNA clone HT09K12
3-PRIME, mRNA sequence
Length = 361
Score = 73.8 bits (37), Expect = 1e-011
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 466 cggcagttggtctgctgctcggcgaagaagggccagcacagcatgggaacgccgccgcaa 525
|||| ||| |||||||||||||||||||||||||| || ||||| || |||||| |||
Sbjct: 234 cggctgtttgtctgctgctcggcgaagaagggccaacagagcatcggcacgccggcgccg 293
Query: 526 atactctccagcgtggagttccacccggagtgcgtca 562
| | ||||| | |||||||||||||| |||||||||
Sbjct: 294 agcccctccatcatggagttccacccgcagtgcgtca 330
>gb|CA019620.1|CA019620 HV12J05r HV Hordeum vulgare subsp. vulgare cDNA clone HV12J05
5-PRIME, mRNA sequence
Length = 556
Score = 73.8 bits (37), Expect = 1e-011
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 727 ttggccagcccccacgcgaactcgaccagctgctcgttggacatcaccgtgatgctcccg 786
||||| |||||||| || |||||||| ||||||||||||| ||| || |||||||| |||
Sbjct: 474 ttggctagcccccaggcaaactcgacgagctgctcgttggtcatgacggtgatgctgccg 415
Query: 787 aagttgacatacacaacggag 807
||||| || ||||| ||||||
Sbjct: 414 aagttcacgtacacgacggag 394
>gb|BF065670.2|BF065670 HV_CEb0013E24f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0013E24f, mRNA sequence
Length = 573
Score = 71.9 bits (36), Expect = 4e-011
Identities = 105/128 (82%)
Strand = Plus / Minus
Query: 439 ccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggc 498
|||| |||||||||| |||||| ||| | ||||||||||||||| ||||||||||| |||
Sbjct: 187 ccgacgccccactcgttgcactggtacctgcagttggtctgctggtcggcgaagaatggc 128
Query: 499 cagcacagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgc 558
|||| | || || ||||||||||| | ||||| |||| |||||||| ||| ||||
Sbjct: 127 cagctgatcaccggtacgccgccgcacaggctctcgagcgccgagttccaaccgctgtgc 68
Query: 559 gtcaggaa 566
|| |||||
Sbjct: 67 gtgaggaa 60
>gb|BM442817.2|BM442817 EBro02_SQ001_G03_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ001_G03 5', mRNA sequence
Length = 419
Score = 71.9 bits (36), Expect = 4e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 439 ccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggc 498
|||| |||||||||| |||||| ||| | ||||||||||||||| ||||||||||| |||
Sbjct: 125 ccgacgccccactcgttgcactggtacctgcagttggtctgctggtcggcgaagaatggc 66
Query: 499 cagc 502
||||
Sbjct: 65 cagc 62
>gb|CA016523.1|CA016523 HV08I24u HV Hordeum vulgare subsp. vulgare cDNA clone HV08I24
3-PRIME, mRNA sequence
Length = 487
Score = 71.9 bits (36), Expect = 4e-011
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 439 ccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggc 498
|||| |||||||||| |||||| ||| | ||||||||||||||| ||||||||||| |||
Sbjct: 348 ccgacgccccactcgttgcactggtacctgcagttggtctgctggtcggcgaagaatggc 407
Query: 499 cagc 502
||||
Sbjct: 408 cagc 411
>gb|CA018416.1|CA018416 HV08I24r HV Hordeum vulgare subsp. vulgare cDNA clone HV08I24
5-PRIME, mRNA sequence
Length = 647
Score = 71.9 bits (36), Expect = 4e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 439 ccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggc 498
|||| |||||||||| |||||| ||| | ||||||||||||||| ||||||||||| |||
Sbjct: 298 ccgacgccccactcgttgcactggtacctgcagttggtctgctggtcggcgaagaatggc 239
Query: 499 cagc 502
||||
Sbjct: 238 cagc 235
>gb|AL499707.1|AL499707 AL499707 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03A20r 3', mRNA sequence
Length = 376
Score = 69.9 bits (35), Expect = 2e-010
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 461 tgtatcggcagttggtctgctgctcggcgaagaagggccagcacagc 507
|||| |||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 327 tgtaccggctgttggtctgctgctccgcgaagaagggccagcacagc 373
>gb|BF628779.2|BF628779 HVSMEb0008B22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008B22f, mRNA sequence
Length = 741
Score = 69.9 bits (35), Expect = 2e-010
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 470 agttggtctgctgctcggcgaagaagggccagcacagcatggg 512
||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 555 agttggtctgctgctcggcgaagaatggccagcagagcatggg 513
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 720 gccggtgttggccagcccccacgcgaactcgaccagctgctcgttggacatcaccgtgat 779
||||| ||||||||| |||||||||||||| ||||||| |||| |||||| |||||
Sbjct: 293 gccggagttggccaggccccacgcgaactccaccagctcctcgccggacatggtggtgat 234
Query: 780 gctcccgaagttgacatacacaacgga 806
|||||| |||||||| ||||| |||||
Sbjct: 233 gctcccaaagttgacgtacaccacgga 207
>gb|BF628789.2|BF628789 HVSMEb0008D18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008D18f, mRNA sequence
Length = 769
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 720 gccggtgttggccagcccccacgcgaactcgaccagctgctcgttggacatcaccgtgat 779
||||| ||||||||| |||||||||||||| ||||||| |||| |||||| |||||
Sbjct: 293 gccggagttggccaggccccacgcgaactccaccagctcctcgccggacatggtggtgat 234
Query: 780 gctcccgaagttgacatacacaacgga 806
|||||| |||||||| ||||| |||||
Sbjct: 233 gctcccaaagttgacgtacaccacgga 207
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 470 agttggtctgctgctcggcgaagaagggccagcacagcatggg 512
||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 555 agttggtctgctgctcgcgcaagaatggccagcagagcatggg 513
>gb|BQ761443.1|BQ761443 EBro07_SQ001_G07_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ001_G07 5', mRNA sequence
Length = 377
Score = 69.9 bits (35), Expect = 2e-010
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 470 agttggtctgctgctcggcgaagaagggccagcacagcatggg 512
||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 61 agttggtctgctgctcggcgaagaatggccagcagagcatggg 19
>gb|AV932146.1|AV932146 AV932146 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2h11 5', mRNA sequence
Length = 507
Score = 67.9 bits (34), Expect = 7e-010
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 471 gttggtctgctgctcggcgaagaagggccagcac 504
||||||||||||||||||||||||||||||||||
Sbjct: 34 gttggtctgctgctcggcgaagaagggccagcac 1
>gb|AV934990.1|AV934990 AV934990 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2h11 3', mRNA sequence
Length = 521
Score = 67.9 bits (34), Expect = 7e-010
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 471 gttggtctgctgctcggcgaagaagggccagcac 504
||||||||||||||||||||||||||||||||||
Sbjct: 488 gttggtctgctgctcggcgaagaagggccagcac 521
>gb|BJ470840.1|BJ470840 BJ470840 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal29b07 5', mRNA sequence
Length = 302
Score = 67.9 bits (34), Expect = 7e-010
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 471 gttggtctgctgctcggcgaagaagggccagcac 504
||||||||||||||||||||||||||||||||||
Sbjct: 34 gttggtctgctgctcggcgaagaagggccagcac 1
>gb|BJ473519.1|BJ473519 BJ473519 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12p21 3', mRNA sequence
Length = 506
Score = 67.9 bits (34), Expect = 7e-010
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 471 gttggtctgctgctcggcgaagaagggccagcac 504
||||||||||||||||||||||||||||||||||
Sbjct: 473 gttggtctgctgctcggcgaagaagggccagcac 506
>gb|BJ475648.1|BJ475648 BJ475648 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal29b07 3', mRNA sequence
Length = 504
Score = 67.9 bits (34), Expect = 7e-010
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 471 gttggtctgctgctcggcgaagaagggccagcac 504
||||||||||||||||||||||||||||||||||
Sbjct: 471 gttggtctgctgctcggcgaagaagggccagcac 504
>gb|BF267582.3|BF267582 HV_CEa0018F10f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018F10f, mRNA sequence
Length = 602
Score = 63.9 bits (32), Expect = 1e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 531 ctccagcgtggagttccacccggagtgcgtcaggaa 566
|||||||||||||||||||||| |||||||||||||
Sbjct: 60 ctccagcgtggagttccacccgcagtgcgtcaggaa 25
>gb|CA015702.1|CA015702 HV12J05u HV Hordeum vulgare subsp. vulgare cDNA clone HV12J05
3-PRIME, mRNA sequence
Length = 562
Score = 63.9 bits (32), Expect = 1e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 439 ccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggc 498
|||| |||||| || ||||| | ||||||||||||||||||||| || |||||||| |||
Sbjct: 473 ccgacgccccattcagtgcattggtatcggcagttggtctgctggtccgcgaagaatggc 532
Query: 499 cagc 502
||||
Sbjct: 533 cagc 536
>emb|AJ234486.1|HVU234486 Hordeum vulgare genomic DNA fragment; clone MWG0527
Length = 580
Score = 60.0 bits (30), Expect = 2e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 466 cggcagttggtctgctgctcggcgaagaagggccagca 503
|||| |||||||||||| ||||||||||||||||||||
Sbjct: 143 cggctgttggtctgctggtcggcgaagaagggccagca 106
Score = 48.1 bits (24), Expect = 6e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 531 ctccagcgtggagttccacccggagtgcgtcaggaa 566
||||||||| |||||||||||| ||||||||||||
Sbjct: 78 ctccagcgtcgagttccacccgccgtgcgtcaggaa 43
>gb|BE214720.2|BE214720 HV_CEb0004F12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0004F12f, mRNA sequence
Length = 637
Score = 56.0 bits (28), Expect = 3e-006
Identities = 111/136 (81%), Gaps = 2/136 (1%)
Strand = Plus / Plus
Query: 258 cacctcttcgatgagcctgtctacgttgcgcatagaccgtccgtcaggccctgcagcggc 317
|||||| | ||||||||| || || ||| |||| |||| |||| |||| | ||||| |||
Sbjct: 224 cacctcatggatgagcctatcaacattgtgcatggaccttccgccaggacgtgcagaggc 283
Query: 318 cacggcgctgtccctgag-ttcagtcacgcgccggagcatctcttgccctttctccccct 376
||||||||| | || ||| ||||| |||||| || ||||||| |||| ||||| |||
Sbjct: 284 cacggcgctcttccggagcttcag-cacgcgtcgtctcatctctcgccccttctcttcct 342
Query: 377 ccatggcctcccgtat 392
||||||||||||||||
Sbjct: 343 ccatggcctcccgtat 358
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 473 tggtctgctgctcggcgaagaagggccagcaca 505
||||||||||||| |||||||| ||||| ||||
Sbjct: 439 tggtctgctgctctgcgaagaaaggccaacaca 471
>gb|BM444331.1|BM444331 EBem09_SQ004_N12_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_N12 5', mRNA sequence
Length = 340
Score = 56.0 bits (28), Expect = 3e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 531 ctccagcgtggagttccacccggagtgcgtca 562
|||||||||||||||||||||| |||||||||
Sbjct: 164 ctccagcgtggagttccacccgcagtgcgtca 133
>gb|CA019923.1|CA019923 HV13L17r HV Hordeum vulgare subsp. vulgare cDNA clone HV13L17
5-PRIME, mRNA sequence
Length = 529
Score = 56.0 bits (28), Expect = 3e-006
Identities = 74/88 (84%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 720 gccggtgttggccagcccccacgcgaac-tcgaccagctgctcgttggacatcaccgtga 778
||||| ||||||||| |||||||||||| || ||||||| |||| |||||| ||||
Sbjct: 512 gccggagttggccaggccccacgcgaacntccaccagctcctcgccggacatggtggtga 453
Query: 779 tgctcccgaagttgacatacacaacgga 806
||||||| |||||||| ||||| |||||
Sbjct: 452 tgctcccaaagttgacgtacaccacgga 425
>gb|BF260942.2|BF260942 HVSMEf0023F14f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023F14f, mRNA sequence
Length = 816
Score = 52.0 bits (26), Expect = 4e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 529 ctctccagcgtggagttccacccggagtgcgtcaggaa 566
||||| ||||||||||||||||||| |||||||||||
Sbjct: 295 ctctctagcgtggagttccacccggcatgcgtcaggaa 258
>gb|BQ768447.1|BQ768447 EBro08_SQ011_B19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_B19 5', mRNA sequence
Length = 418
Score = 48.1 bits (24), Expect = 6e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 531 ctccagcgtggagttccacccggagtgcgtcaggaa 566
||||||||| ||||||||||||| ||| ||||||||
Sbjct: 206 ctccagcgtcgagttccacccggcgtgggtcaggaa 171
>gb|BQ662175.1|BQ662175 HR01O04u HR Hordeum vulgare subsp. vulgare cDNA clone HR01O04
3-PRIME, mRNA sequence
Length = 532
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 531 ctccagcgtggagttccacccggagtg 557
|||||||||||||||||||||| ||||
Sbjct: 433 ctccagcgtggagttccacccgcagtg 459
>gb|BF262509.1|BF262509 HV_CEa0004C17f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0004C17f, mRNA sequence
Length = 873
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 541 gagttccacccggagtgcgtcaggaa 566
|||||||||||| |||||||||||||
Sbjct: 81 gagttccacccgcagtgcgtcaggaa 56
>gb|BU994136.1|BU994136 HM05N21r HM Hordeum vulgare subsp. vulgare cDNA clone HM05N21
5-PRIME, mRNA sequence
Length = 554
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 529 ctctccagcgtggagttccacccggagtgcgtcaggaacacccccacggc 578
||||||||||||||| ||| ||| ||||||||| ||| ||||||||||
Sbjct: 165 ctctccagcgtggagccccatccgcagtgcgtcatgaagccccccacggc 116
>gb|CB880799.1|CB880799 HM07N21w HM Hordeum vulgare subsp. vulgare cDNA clone HM07N21
3-PRIME, mRNA sequence
Length = 550
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 529 ctctccagcgtggagttccacccggagtgcgtcaggaacacccccacggc 578
||||||||||||||| ||| ||| ||||||||| ||| ||||||||||
Sbjct: 390 ctctccagcgtggagccccatccgcagtgcgtcatgaagccccccacggc 439
>gb|BF260299.1|BF260299 HVSMEf0021K03f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021K03f, mRNA sequence
Length = 555
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 818 ggccgttgagccaccggagc 837
||||||||||||||||||||
Sbjct: 246 ggccgttgagccaccggagc 227
>gb|BF253477.2|BF253477 HVSMEf0001A18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001A18f, mRNA sequence
Length = 612
Score = 40.1 bits (20), Expect = 0.15
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 531 ctccagcgtggagttccacccggagtgcgtcaggaa 566
||||||||| | |||||| ||| |||||||||||||
Sbjct: 335 ctccagcgtcgcgttccagccgcagtgcgtcaggaa 300
>gb|CB879235.1|CB879235 HP11G23T HP Hordeum vulgare subsp. vulgare cDNA clone HP11G23
5-PRIME, mRNA sequence
Length = 622
Score = 40.1 bits (20), Expect = 0.15
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 531 ctccagcgtggagttccacccggagtgcgtcaggaa 566
||||||||| | |||||| ||| |||||||||||||
Sbjct: 83 ctccagcgtcgcgttccagccgcagtgcgtcaggaa 48
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 114,049
Number of Sequences: 312970
Number of extensions: 114049
Number of successful extensions: 31579
Number of sequences better than 0.5: 49
Number of HSP's better than 0.5 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31445
Number of HSP's gapped (non-prelim): 112
length of query: 1086
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1067
effective length of database: 169,188,109
effective search space: 180523712303
effective search space used: 180523712303
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)