BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2576887.2.1
(1138 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG368983.1|BG368983 HVSMEi0021P17f Hordeum vulgare 20 DA... 339 1e-091
gb|AL506966.1|AL506966 AL506966 Hordeum vulgare Barke devel... 280 1e-073
gb|BE422325.1|BE422325 HWM023cA.11r ITEC HWM Barley Leaf Li... 200 7e-050
gb|BU985887.1|BU985887 HF08O22r HF Hordeum vulgare subsp. v... 174 4e-042
gb|AV925297.1|AV925297 AV925297 K. Sato unpublished cDNA li... 149 2e-034
gb|AV930451.1|AV930451 AV930451 K. Sato unpublished cDNA li... 149 2e-034
gb|AL507460.1|AL507460 AL507460 Hordeum vulgare Barke devel... 137 9e-031
gb|AV910880.1|AV910880 AV910880 K. Sato unpublished cDNA li... 123 1e-026
gb|BF629887.2|BF629887 HVSMEb0007D12f Hordeum vulgare seedl... 107 8e-022
gb|BQ665780.1|BQ665780 HZ01B14u HZ Hordeum vulgare subsp. v... 76 3e-012
gb|AL510387.1|AL510387 AL510387 Hordeum vulgare Barke devel... 56 3e-006
gb|BQ460795.1|BQ460795 HA05O10r HA Hordeum vulgare subsp. v... 52 4e-005
gb|BQ464292.1|BQ464292 HF01N24T HF Hordeum vulgare subsp. v... 52 4e-005
gb|CA029015.1|CA029015 HZ63P05r HZ Hordeum vulgare subsp. v... 52 4e-005
gb|CA029413.1|CA029413 HZ65C08r HZ Hordeum vulgare subsp. v... 52 4e-005
gb|CA030413.1|CA030413 HX06P19r HX Hordeum vulgare subsp. v... 52 4e-005
gb|CA030903.1|CA030903 HX08H12r HX Hordeum vulgare subsp. v... 52 4e-005
gb|CB875003.1|CB875003 HX06P19w HX Hordeum vulgare subsp. v... 52 4e-005
gb|CB875491.1|CB875491 HX08H12w HX Hordeum vulgare subsp. v... 52 4e-005
gb|BQ658066.1|BQ658066 HA05O10u HA Hordeum vulgare subsp. v... 46 0.003
gb|BI949346.1|BI949346 HVSMEl0013G24f Hordeum vulgare spike... 40 0.16
gb|BM816162.1|BM816162 HC02B11_T3.ab1 HC Hordeum vulgare su... 40 0.16
gb|BM816163.1|BM816163 HC02F05_T3.ab1 HC Hordeum vulgare su... 40 0.16
gb|BQ740129.1|BQ740129 HC108F04 HC Hordeum vulgare subsp. v... 40 0.16
gb|BI777749.2|BI777749 EBro08_SQ001_M12_R root, 3 week, dro... 40 0.16
gb|BQ767760.1|BQ767760 EBro08_SQ009_D19_R root, 3 week, dro... 40 0.16
gb|CA022861.1|CA022861 HZ44J03r HZ Hordeum vulgare subsp. v... 40 0.16
gb|AF000940.1|AF000940 Hordeum vulgare ribonuclease gene, c... 40 0.16
>gb|BG368983.1|BG368983 HVSMEi0021P17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021P17f, mRNA sequence
Length = 854
Score = 339 bits (171), Expect = 1e-091
Identities = 414/495 (83%)
Strand = Plus / Plus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
|||||| |||||||||||||||||||| | || |||||||| |||||||||||| ||||
Sbjct: 160 gcagcgcgagttcgactacttcgcgctggcgctgcagtggccgggcaccatctgctcctc 219
Query: 210 cacccgccactgctgcgccaccaacggctgctgccgctcggagccgctccagacgttcac 269
||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||
Sbjct: 220 cacccgccactgctgcgccgtcaacggctgctgccggaaggagccgctccacacgttcac 279
Query: 270 gatccacgggctatggccggactacgacgacgggacctggccgtcgtgctgccgccgcac 329
|||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 280 gatccacgggctgtggccggactacgatgacgggacttggccgtcgtgctgccgccgcac 339
Query: 330 ccaattcgagatggacaagatattgccactgaaggaggtgcttgacaagtactggccgtc 389
| ||||| |||||||||||| ||| |||||| ||| |||||||||||||||||
Sbjct: 340 cagtttcgacatggacaagataacgcctctgaagcccacgctggacaagtactggccgtc 399
Query: 390 cctctactgctccaaatctggaacatgcttcagcggcaagggactcttctgggctcacga 449
||||||||| || ||| || || ||||| || | ||| | |||||||||||| ||
Sbjct: 400 cctctactgttcgtcctcttccacttgtttcagtggtaggggccccttctgggctcatga 459
Query: 450 gtgggagaaacatggaacctgctctgcccctgtggttcaggatgaattacagtatttcac 509
||||||||| |||||||| ||||| ||||||| |||| ||| ||||||||||| ||||
Sbjct: 460 gtgggagaagcatggaacatgctcggcccctgctgttcgggaagaattacagtacttcag 519
Query: 510 ccttgcccttgacctctactccaagtataacgttacggaaatgctgtcaagtggagggat 569
| ||||||||| ||||||| ||| |||||||| || |||||| || | | ||||| ||
Sbjct: 520 cactgcccttgatctctacttcaaatataacgtgacagaaatgttggcgactggagatat 579
Query: 570 acaggtttcaaatggtaaggaatatgcactgagcgatgtcatcgataccatcaaacatgc 629
| ||| || | || | |||||||||||||| |||||||| || |||||||| |||||
Sbjct: 580 cctggtctcccacggctaagaatatgcactgagtgatgtcattgacaccatcaagcatgc 639
Query: 630 ttttgggggatcacc 644
||||||||| |||||
Sbjct: 640 ttttgggggctcacc 654
>gb|AL506966.1|AL506966 AL506966 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04M09T 5',
mRNA sequence
Length = 561
Score = 280 bits (141), Expect = 1e-073
Identities = 337/403 (83%)
Strand = Plus / Plus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
|||||| |||||||||||||||||||| | || |||||||| |||||||||||| ||||
Sbjct: 152 gcagcgcgagttcgactacttcgcgctggcgctgcagtggccgggcaccatctgctcctc 211
Query: 210 cacccgccactgctgcgccaccaacggctgctgccgctcggagccgctccagacgttcac 269
||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||
Sbjct: 212 cacccgccactgctgcgccgtcaacggctgctgccggaaggagccgctccacacgttcac 271
Query: 270 gatccacgggctatggccggactacgacgacgggacctggccgtcgtgctgccgccgcac 329
|||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||| |||
Sbjct: 272 gatccacgggctgtggccggactacgatgacgggacttggccgtngtgctgccgccacac 331
Query: 330 ccaattcgagatggacaagatattgccactgaaggaggtgcttgacaagtactggccgtc 389
| ||||| |||||||||||| ||| ||||| || |||||||||||||||||
Sbjct: 332 cagtttcgacatggacaagataacgcctttgaagcccactctggacaagtactggccgtc 391
Query: 390 cctctactgctccaaatctggaacatgcttcagcggcaagggactcttctgggctcacga 449
||||||||| || ||| || || ||||| || | ||| | |||||||||||| ||
Sbjct: 392 cctctactgttcgtcctcttccacttgtttcagtggtaggggccccttctgggctcatga 451
Query: 450 gtgggagaaacatggaacctgctctgcccctgtggttcaggatgaattacagtatttcac 509
||||||||| |||||||| ||||| ||||||| |||| ||| ||||||||||| ||||
Sbjct: 452 gtgggagaagcatggaacatgctcggcccctgctgttcgggaagaattacagtacttcag 511
Query: 510 ccttgcccttgacctctactccaagtataacgttacggaaatg 552
| ||||||||| || |||| ||| |||||||| || ||||||
Sbjct: 512 cactgcccttgatctntacttcaaatataacgtgacagaaatg 554
>gb|BE422325.1|BE422325 HWM023cA.11r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM023cA.11, mRNA sequence
Length = 1078
Score = 200 bits (101), Expect = 7e-050
Identities = 293/357 (82%)
Strand = Plus / Plus
Query: 375 caagtactggccgtccctctactgctccaaatctggaacatgcttcagcggcaagggact 434
|||||||||||||||||||||||| || ||| || || ||||| || | ||| |
Sbjct: 122 caagtactggccgtccctctactgttcgtcctcttccacttgtttcagtggtaggggccc 181
Query: 435 cttctgggctcacgagtgggagaaacatggaacctgctctgcccctgtggttcaggatga 494
|||||||||||| ||||||||||| |||||||| ||||| ||||||| |||| ||| ||
Sbjct: 182 cttctgggctcatgagtgggagaagcatggaacatgctcggcccctgctgttcgggaaga 241
Query: 495 attacagtatttcacccttgcccttgacctctactccaagtataacgttacggaaatgct 554
||||||||| |||| | ||||||||| ||||||| ||| |||||||| || |||||| |
Sbjct: 242 attacagtacttcagcactgcccttgatctctacttcaaatataacgtgacagaaatgtt 301
Query: 555 gtcaagtggagggatacaggtttcaaatggtaaggaatatgcactgagcgatgtcatcga 614
| | | ||||| || | ||| || || ||||| |||||||||||||| |||||||| ||
Sbjct: 302 ggcgactggagatatcctggtctccaacggtaaagaatatgcactgagtgatgtcattga 361
Query: 615 taccatcaaacatgcttttgggggatcaccacaaattgtttgcaagaggggttcaatcga 674
|||||||| |||||||||||||| ||||| || || | ||||||| ||| ||| | |
Sbjct: 362 caccatcaagcatgcttttgggggctcaccgcagatcatctgcaagaagggctcagttca 421
Query: 675 agaacttaggttatgcttcgacaaagaattgaagcctcgtgattgccttaccacttc 731
|||||| |||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 422 agaactaaggttatgcttcaccaaagatttgaagcctcgtgattgccttactacttc 478
>gb|BU985887.1|BU985887 HF08O22r HF Hordeum vulgare subsp. vulgare cDNA clone HF08O22
5-PRIME, mRNA sequence
Length = 549
Score = 174 bits (88), Expect = 4e-042
Identities = 232/280 (82%)
Strand = Plus / Plus
Query: 452 gggagaaacatggaacctgctctgcccctgtggttcaggatgaattacagtatttcaccc 511
||||||| |||||||| ||||| ||||||| |||| ||| ||||||||||| |||| |
Sbjct: 9 gggagaagcatggaacatgctcggcccctgctgttcgggaagaattacagtacttcagca 68
Query: 512 ttgcccttgacctctactccaagtataacgttacggaaatgctgtcaagtggagggatac 571
||||||||| ||||||| ||| |||||||| || |||||| || | | ||||| || |
Sbjct: 69 ctgcccttgatctctacttcaaatataacgtgacagaaatgttggcgactggagatatcc 128
Query: 572 aggtttcaaatggtaaggaatatgcactgagcgatgtcatcgataccatcaaacatgctt 631
||| || || ||||| |||||||||||||| |||||||| || |||||||| |||||||
Sbjct: 129 tggtctccaacggtaaagaatatgcactgagtgatgtcattgacaccatcaagcatgctt 188
Query: 632 ttgggggatcaccacaaattgtttgcaagaggggttcaatcgaagaacttaggttatgct 691
||||||| ||||| || || | ||||||| ||| ||| | ||||||| ||||||||||
Sbjct: 189 ttgggggctcaccgcagatcatctgcaagaagggctcagttcaagaactaaggttatgct 248
Query: 692 tcgacaaagaattgaagcctcgtgattgccttaccacttc 731
|| |||||| ||||||||||||||||||||||| |||||
Sbjct: 249 tcaccaaagatttgaagcctcgtgattgccttactacttc 288
>gb|AV925297.1|AV925297 AV925297 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22j13 5', mRNA sequence
Length = 471
Score = 149 bits (75), Expect = 2e-034
Identities = 198/239 (82%)
Strand = Plus / Plus
Query: 493 gaattacagtatttcacccttgcccttgacctctactccaagtataacgttacggaaatg 552
||||||||||| |||| | ||||||||| ||||||| ||| |||||||| || ||||||
Sbjct: 7 gaattacagtacttcagcactgcccttgatctctacttcaaatataacgtgacagaaatg 66
Query: 553 ctgtcaagtggagggatacaggtttcaaatggtaaggaatatgcactgagcgatgtcatc 612
|| | | ||||| || | ||| || || ||||| |||||||||||||| ||||||||
Sbjct: 67 ttggcgactggagatatcctggtctccaacggtaaagaatatgcactgagtgatgtcatt 126
Query: 613 gataccatcaaacatgcttttgggggatcaccacaaattgtttgcaagaggggttcaatc 672
|| |||||||| |||||||||||||| ||||| || || | ||||||| ||| ||| |
Sbjct: 127 gacaccatcaagcatgcttttgggggctcaccgcagatcatctgcaagaagggctcagtt 186
Query: 673 gaagaacttaggttatgcttcgacaaagaattgaagcctcgtgattgccttaccacttc 731
||||||| |||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 187 caagaactaaggttatgcttcaccaaagatttgaagcctcgtgattgccttactacttc 245
>gb|AV930451.1|AV930451 AV930451 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22j13 3', mRNA sequence
Length = 595
Score = 149 bits (75), Expect = 2e-034
Identities = 198/239 (82%)
Strand = Plus / Minus
Query: 493 gaattacagtatttcacccttgcccttgacctctactccaagtataacgttacggaaatg 552
||||||||||| |||| | ||||||||| ||||||| ||| |||||||| || ||||||
Sbjct: 589 gaattacagtacttcagcactgcccttgatctctacttcaaatataacgtgacagaaatg 530
Query: 553 ctgtcaagtggagggatacaggtttcaaatggtaaggaatatgcactgagcgatgtcatc 612
|| | | ||||| || | ||| || || ||||| |||||||||||||| ||||||||
Sbjct: 529 ttggcgactggagatatcctggtctccaacggtaaagaatatgcactgagtgatgtcatt 470
Query: 613 gataccatcaaacatgcttttgggggatcaccacaaattgtttgcaagaggggttcaatc 672
|| |||||||| |||||||||||||| ||||| || || | ||||||| ||| ||| |
Sbjct: 469 gacaccatcaagcatgcttttgggggctcaccgcagatcatctgcaagaagggctcagtt 410
Query: 673 gaagaacttaggttatgcttcgacaaagaattgaagcctcgtgattgccttaccacttc 731
||||||| |||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 409 caagaactaaggttatgcttcaccaaagatttgaagcctcgtgattgccttactacttc 351
>gb|AL507460.1|AL507460 AL507460 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05N03V 5',
mRNA sequence
Length = 699
Score = 137 bits (69), Expect = 9e-031
Identities = 180/217 (82%)
Strand = Plus / Minus
Query: 515 cccttgacctctactccaagtataacgttacggaaatgctgtcaagtggagggatacagg 574
||||||| ||||||| ||| |||||||| || |||||| || | | ||||| || | ||
Sbjct: 619 cccttgatctctacttcaaatataacgtgacagaaatgttggcgactggagatatcctgg 560
Query: 575 tttcaaatggtaaggaatatgcactgagcgatgtcatcgataccatcaaacatgcttttg 634
| || || ||||| |||||||||||||| |||||||| || |||||||| ||||||||||
Sbjct: 559 tctccaacggtaaagaatatgcactgagtgatgtcattgacaccatcaagcatgcttttg 500
Query: 635 ggggatcaccacaaattgtttgcaagaggggttcaatcgaagaacttaggttatgcttcg 694
|||| ||||| || || | ||||||| ||| ||| | ||||||| ||||||||||||
Sbjct: 499 ggggctcaccgcagatcatctgcaagaagggctcagttcaagaactaaggttatgcttca 440
Query: 695 acaaagaattgaagcctcgtgattgccttaccacttc 731
|||||| ||||||||||||||||||||||| |||||
Sbjct: 439 ccaaagatttgaagcctcgtgattgccttactacttc 403
>gb|AV910880.1|AV910880 AV910880 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11d09 3', mRNA sequence
Length = 232
Score = 123 bits (62), Expect = 1e-026
Identities = 127/149 (85%)
Strand = Plus / Minus
Query: 583 ggtaaggaatatgcactgagcgatgtcatcgataccatcaaacatgcttttgggggatca 642
||||| |||||||| ||||| |||||||| || |||||||| |||||||||||||| |||
Sbjct: 218 ggtaaagaatatgcnctgagtgatgtcattgacaccatcaagcatgcttttgggggctca 159
Query: 643 ccacaaattgtttgcaagaggggttcaatcgaagaacttaggttatgcttcgacaaagaa 702
|| || || | ||||||| ||| ||| | ||||||| |||||||||||| ||||||
Sbjct: 158 ccgcagatcatctgcaagaagggctcagttcaagaactaaggttatgcttcaccaaagat 99
Query: 703 ttgaagcctcgtgattgccttaccacttc 731
||||||||||||||||||||||| |||||
Sbjct: 98 ttgaagcctcgtgattgccttactacttc 70
>gb|BF629887.2|BF629887 HVSMEb0007D12f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0007D12f, mRNA sequence
Length = 502
Score = 107 bits (54), Expect = 8e-022
Identities = 141/170 (82%)
Strand = Plus / Plus
Query: 150 gcagcgggagttcgactacttcgcgctctccctccagtggcccggcaccatctgcgcctc 209
|||||| |||||||||||||||||||| | || ||| |||| ||| |||||||| ||
Sbjct: 184 gcagcgcgagttcgactacttcgcgctggcgctgcagaggccgggcgccatctgcttctt 243
Query: 210 cacccgccactgctgcgccaccaacggctgctgccgctcggagccgctccagacgttcac 269
||||||||||||||||||| |||| ||||||| || |||||| |||| ||||| ||
Sbjct: 244 cacccgccactgctgcgccgtcaacagctgctgtcggatggagccagtccacacgtttac 303
Query: 270 gatccacgggctatggccggactacgacgacgggacctggccgtcgtgct 319
|||||| |||| |||||||||||||| ||| |||| |||||||| ||||
Sbjct: 304 tatccactggctgtggccggactacgatgactggacttggccgtcatgct 353
Score = 42.1 bits (21), Expect = 0.040
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 378 gtactggccgtccctctactg 398
|||||||||||||||||||||
Sbjct: 415 gtactggccgtccctctactg 435
>gb|BQ665780.1|BQ665780 HZ01B14u HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01B14
3-PRIME, mRNA sequence
Length = 462
Score = 75.8 bits (38), Expect = 3e-012
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 674 aagaacttaggttatgcttcgacaaagaattgaagcctcgtgattgccttaccacttc 731
||||||| |||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 456 aagaactaaggttatgcttcaccaaagatttgaagcctcgtgattgccttactacttc 399
>gb|AL510387.1|AL510387 AL510387 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04M09u 3',
mRNA sequence
Length = 683
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 682 aggttatgcttcgacaaagaattgaagcctcgtgattgcc 721
|||||||||||| |||||| |||||||||||||||||||
Sbjct: 553 aggttatgcttcaccaaagatttgaagcctcgtgattgcc 514
>gb|BQ460795.1|BQ460795 HA05O10r HA Hordeum vulgare subsp. vulgare cDNA clone HA05O10
5-PRIME, mRNA sequence
Length = 634
Score = 52.0 bits (26), Expect = 4e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 184 cagtggcccggcaccatctgcgcctccacccgccactgctgcgccaccaacggctgctgc 243
||||||| |||||||||||| |||| |||||||||||| || ||| ||| ||||| |||
Sbjct: 215 cagtggcaaggcaccatctgctcctcgacccgccactgccgcaccatcaatggctgttgc 274
Query: 244 cg 245
||
Sbjct: 275 cg 276
>gb|BQ464292.1|BQ464292 HF01N24T HF Hordeum vulgare subsp. vulgare cDNA clone HF01N24
5-PRIME, mRNA sequence
Length = 525
Score = 52.0 bits (26), Expect = 4e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 184 cagtggcccggcaccatctgcgcctccacccgccactgctgcgccaccaacggctgctgc 243
||||||| |||||||||||| |||| |||||||||||| || ||| ||| ||||| |||
Sbjct: 148 cagtggcaaggcaccatctgctcctcgacccgccactgccgcaccatcaatggctgttgc 207
Query: 244 cg 245
||
Sbjct: 208 cg 209
>gb|CA029015.1|CA029015 HZ63P05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63P05
5-PRIME, mRNA sequence
Length = 362
Score = 52.0 bits (26), Expect = 4e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 184 cagtggcccggcaccatctgcgcctccacccgccactgctgcgccaccaacggctgctgc 243
||||||| |||||||||||| |||| |||||||||||| || ||| ||| ||||| |||
Sbjct: 113 cagtggcaaggcaccatctgctcctcgacccgccactgccgcaccatcaatggctgttgc 172
Query: 244 cg 245
||
Sbjct: 173 cg 174
>gb|CA029413.1|CA029413 HZ65C08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65C08
5-PRIME, mRNA sequence
Length = 494
Score = 52.0 bits (26), Expect = 4e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 184 cagtggcccggcaccatctgcgcctccacccgccactgctgcgccaccaacggctgctgc 243
||||||| |||||||||||| |||| |||||||||||| || ||| ||| ||||| |||
Sbjct: 117 cagtggcaaggcaccatctgctcctcgacccgccactgccgcaccatcaatggctgttgc 176
Query: 244 cg 245
||
Sbjct: 177 cg 178
>gb|CA030413.1|CA030413 HX06P19r HX Hordeum vulgare subsp. vulgare cDNA clone HX06P19
5-PRIME, mRNA sequence
Length = 582
Score = 52.0 bits (26), Expect = 4e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 184 cagtggcccggcaccatctgcgcctccacccgccactgctgcgccaccaacggctgctgc 243
||||||| |||||||||||| |||| |||||||||||| || ||| ||| ||||| |||
Sbjct: 170 cagtggcaaggcaccatctgctcctcgacccgccactgccgcaccatcaatggctgttgc 229
Query: 244 cg 245
||
Sbjct: 230 cg 231
>gb|CA030903.1|CA030903 HX08H12r HX Hordeum vulgare subsp. vulgare cDNA clone HX08H12
5-PRIME, mRNA sequence
Length = 560
Score = 52.0 bits (26), Expect = 4e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 184 cagtggcccggcaccatctgcgcctccacccgccactgctgcgccaccaacggctgctgc 243
||||||| |||||||||||| |||| |||||||||||| || ||| ||| ||||| |||
Sbjct: 171 cagtggcaaggcaccatctgctcctcgacccgccactgccgcaccatcaatggctgttgc 230
Query: 244 cg 245
||
Sbjct: 231 cg 232
>gb|CB875003.1|CB875003 HX06P19w HX Hordeum vulgare subsp. vulgare cDNA clone HX06P19
3-PRIME, mRNA sequence
Length = 586
Score = 52.0 bits (26), Expect = 4e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 184 cagtggcccggcaccatctgcgcctccacccgccactgctgcgccaccaacggctgctgc 243
||||||| |||||||||||| |||| |||||||||||| || ||| ||| ||||| |||
Sbjct: 414 cagtggcaaggcaccatctgctcctcgacccgccactgccgcaccatcaatggctgttgc 355
Query: 244 cg 245
||
Sbjct: 354 cg 353
>gb|CB875491.1|CB875491 HX08H12w HX Hordeum vulgare subsp. vulgare cDNA clone HX08H12
3-PRIME, mRNA sequence
Length = 586
Score = 52.0 bits (26), Expect = 4e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 184 cagtggcccggcaccatctgcgcctccacccgccactgctgcgccaccaacggctgctgc 243
||||||| |||||||||||| |||| |||||||||||| || ||| ||| ||||| |||
Sbjct: 414 cagtggcaaggcaccatctgctcctcgacccgccactgccgcaccatcaatggctgttgc 355
Query: 244 cg 245
||
Sbjct: 354 cg 353
>gb|BQ658066.1|BQ658066 HA05O10u HA Hordeum vulgare subsp. vulgare cDNA clone HA05O10
3-PRIME, mRNA sequence
Length = 542
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 184 cagtggcccggcaccatctgcgcctccacccgccactgc 222
||||||| |||||||||||| |||| ||||||||||||
Sbjct: 504 cagtggcaaggcaccatctgctcctcgacccgccactgc 466
>gb|BI949346.1|BI949346 HVSMEl0013G24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013G24f, mRNA sequence
Length = 491
Score = 40.1 bits (20), Expect = 0.16
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 436 ttctgggctcacgagtgggagaaacatggaacctgc 471
|||||||| |||||||||||||| || || ||||||
Sbjct: 369 ttctgggcgcacgagtgggagaagcacggcacctgc 404
>gb|BM816162.1|BM816162 HC02B11_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC02B11_T3.ab1 similar to Ribonuclease
III,Exoribonuclease II,Ribonuclease T2,Ribonuclease
F,Ribonuclease H,Ribonuclease P,Ribonuclease
V,Pancreatic ribonuclease,tRNA nucleotidyltransferase,,
mRNA sequence
Length = 787
Score = 40.1 bits (20), Expect = 0.16
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 436 ttctgggctcacgagtgggagaaacatggaacctgc 471
|||||||| |||||||||||||| || || ||||||
Sbjct: 375 ttctgggcgcacgagtgggagaagcacggcacctgc 410
>gb|BM816163.1|BM816163 HC02F05_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC02F05_T3.ab1 similar to Ribonuclease
III,Exoribonuclease II,Ribonuclease T2,Ribonuclease
F,Ribonuclease H,Ribonuclease P,Ribonuclease
V,Pancreatic ribonuclease,tRNA nucleotidyltransferase,,
mRNA sequence
Length = 809
Score = 40.1 bits (20), Expect = 0.16
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 436 ttctgggctcacgagtgggagaaacatggaacctgc 471
|||||||| |||||||||||||| || || ||||||
Sbjct: 375 ttctgggcgcacgagtgggagaagcacggcacctgc 410
>gb|BQ740129.1|BQ740129 HC108F04 HC Hordeum vulgare subsp. vulgare cDNA clone HC108F04
similar to ribonuclease (EC 3.1.-.-) - barley
gi|2150002|gb|AAB58719.1| (AF000940) ribonuclease
[Hordeum vulgare], mRNA sequence
Length = 612
Score = 40.1 bits (20), Expect = 0.16
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 436 ttctgggctcacgagtgggagaaacatggaacctgc 471
|||||||| |||||||||||||| || || ||||||
Sbjct: 375 ttctgggcgcacgagtgggagaagcacggcacctgc 410
>gb|BI777749.2|BI777749 EBro08_SQ001_M12_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ001_M12 5', mRNA sequence
Length = 412
Score = 40.1 bits (20), Expect = 0.16
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 436 ttctgggctcacgagtgggagaaacatggaacctgc 471
|||||||| |||||||||||||| || || ||||||
Sbjct: 372 ttctgggcgcacgagtgggagaagcacggcacctgc 407
>gb|BQ767760.1|BQ767760 EBro08_SQ009_D19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_D19 5', mRNA sequence
Length = 428
Score = 40.1 bits (20), Expect = 0.16
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 436 ttctgggctcacgagtgggagaaacatggaacctgc 471
|||||||| |||||||||||||| || || ||||||
Sbjct: 369 ttctgggcgcacgagtgggagaagcacggcacctgc 404
>gb|CA022861.1|CA022861 HZ44J03r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ44J03
5-PRIME, mRNA sequence
Length = 483
Score = 40.1 bits (20), Expect = 0.16
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 436 ttctgggctcacgagtgggagaaacatggaacctgc 471
|||||||| |||||||||||||| || || ||||||
Sbjct: 368 ttctgggcgcacgagtgggagaagcacggcacctgc 403
>gb|AF000940.1|AF000940 Hordeum vulgare ribonuclease gene, complete cds
Length = 1583
Score = 40.1 bits (20), Expect = 0.16
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 436 ttctgggctcacgagtgggagaaacatggaacctgc 471
|||||||| |||||||||||||| || || ||||||
Sbjct: 1215 ttctgggcgcacgagtgggagaagcacggcacctgc 1250
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 117,022
Number of Sequences: 312970
Number of extensions: 117022
Number of successful extensions: 33007
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32950
Number of HSP's gapped (non-prelim): 52
length of query: 1138
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1119
effective length of database: 169,188,109
effective search space: 189321493971
effective search space used: 189321493971
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)