BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2576652.2.5
(1033 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL508293.1|AL508293 AL508293 Hordeum vulgare Barke devel... 505 e-142
gb|AV924501.1|AV924501 AV924501 K. Sato unpublished cDNA li... 505 e-142
gb|BM817120.1|BM817120 HC110B07_T3.ab1 HC Hordeum vulgare s... 505 e-142
gb|BQ460152.1|BQ460152 HA07B05r HA Hordeum vulgare subsp. v... 505 e-142
gb|BU970301.1|BU970301 HB14D20r BC Hordeum vulgare subsp. v... 502 e-140
gb|BQ766601.1|BQ766601 EBro08_SQ006_G17_R root, 3 week, dro... 496 e-139
gb|AV926409.1|AV926409 AV926409 K. Sato unpublished cDNA li... 478 e-133
gb|BM098110.2|BM098110 EBpi03_SQ002_J08_R pistil, 4 DPA, no... 478 e-133
gb|BU982068.1|BU982068 HA25G22r HA Hordeum vulgare subsp. v... 478 e-133
gb|CV061961.1|CV061961 BNEL74g8 Barley EST endosperm librar... 476 e-133
gb|BG415596.2|BG415596 HVSMEk0007C06f Hordeum vulgare testa... 474 e-132
gb|AV929590.1|AV929590 AV929590 K. Sato unpublished cDNA li... 474 e-132
gb|CV057135.1|CV057135 BNEL24d4 Barley EST endosperm librar... 474 e-132
gb|BQ762174.1|BQ762174 EBro01_SQ005_D05_R root, 3 week, hyd... 462 e-128
gb|BF618752.2|BF618752 HVSMEc0007K15f Hordeum vulgare seedl... 444 e-123
gb|AV929597.1|AV929597 AV929597 K. Sato unpublished cDNA li... 436 e-121
gb|BE454600.2|BE454600 HVSMEh0094K24f Hordeum vulgare 5-45 ... 426 e-118
gb|AV923126.1|AV923126 AV923126 K. Sato unpublished cDNA li... 420 e-116
gb|BM375286.2|BM375286 EBem06_SQ002_O05_R embryo, 21 DPA, n... 414 e-114
gb|BU979844.1|BU979844 HA17I05r HA Hordeum vulgare subsp. v... 410 e-113
gb|BU988661.1|BU988661 HF18F08r HF Hordeum vulgare subsp. v... 410 e-113
gb|BU996898.1|BU996898 HI06C14r HI Hordeum vulgare subsp. v... 410 e-113
gb|AV927834.1|AV927834 AV927834 K. Sato unpublished cDNA li... 406 e-112
gb|BU998847.1|BU998847 HI12F13r HI Hordeum vulgare subsp. v... 406 e-112
gb|BU988940.1|BU988940 HF19D13r HF Hordeum vulgare subsp. v... 391 e-107
gb|BF628481.3|BF628481 HVSMEb0006D18f Hordeum vulgare seedl... 389 e-106
gb|AV931292.1|AV931292 AV931292 K. Sato unpublished cDNA li... 377 e-103
gb|CB860013.1|CB860013 HI12F13w HI Hordeum vulgare subsp. v... 377 e-103
gb|CV062596.1|CV062596 BNEL80g7 Barley EST endosperm librar... 375 e-102
gb|CV060436.1|CV060436 BNEL58b11 Barley EST endosperm libra... 369 e-100
gb|BQ657773.1|BQ657773 HA07B05u HA Hordeum vulgare subsp. v... 363 8e-099
gb|AL505905.1|AL505905 AL505905 Hordeum vulgare Barke roots... 351 3e-095
gb|BU980189.1|BU980189 HA18P01r HA Hordeum vulgare subsp. v... 347 5e-094
gb|AV916947.1|AV916947 AV916947 K. Sato unpublished cDNA li... 341 3e-092
gb|BI952446.1|BI952446 HVSMEm0006H17f Hordeum vulgare green... 325 2e-087
gb|BU988354.1|BU988354 HF17G09r HF Hordeum vulgare subsp. v... 311 2e-083
gb|AL511520.1|AL511520 AL511520 Hordeum vulgare Barke devel... 293 6e-078
gb|BI950558.1|BI950558 HVSMEl0021F09f Hordeum vulgare spike... 291 2e-077
gb|BU980725.1|BU980725 HA21H24r HA Hordeum vulgare subsp. v... 285 1e-075
gb|BM372965.2|BM372965 EBma04_SQ002_J06_R maternal, 10 DPA,... 268 3e-070
gb|BF631450.3|BF631450 HVSMEb0015P19f Hordeum vulgare seedl... 248 3e-064
gb|AV918196.1|AV918196 AV918196 K. Sato unpublished cDNA li... 242 2e-062
gb|BM099716.2|BM099716 EBes01_SQ004_B06_R embryo sac, 4-6 D... 240 8e-062
gb|CB858204.1|CB858204 HI06C14w HI Hordeum vulgare subsp. v... 238 3e-061
gb|CB858274.1|CB858274 HI06G14w HI Hordeum vulgare subsp. v... 236 1e-060
gb|BF616598.2|BF616598 HVSMEc0010L09f Hordeum vulgare seedl... 184 4e-045
gb|BE194698.3|BE194698 HVSMEh0086I19f Hordeum vulgare 5-45 ... 168 2e-040
gb|AL503150.1|AL503150 AL503150 Hordeum vulgare Barke roots... 163 1e-038
gb|BQ758014.1|BQ758014 EBes01_SQ001_B04_R embryo sac, 4-6 D... 127 8e-028
gb|BM441188.2|BM441188 EBed02_SQ002_K20_R endosperm, 8 DPA,... 123 1e-026
gb|BI948895.1|BI948895 HVSMEl0011E24f Hordeum vulgare spike... 82 4e-014
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 42 0.036
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 40 0.14
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 40 0.14
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 40 0.14
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 40 0.14
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 40 0.14
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 40 0.14
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 40 0.14
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 40 0.14
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 40 0.14
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 40 0.14
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 40 0.14
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.14
>gb|AL508293.1|AL508293 AL508293 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08F10V 5',
mRNA sequence
Length = 700
Score = 505 bits (255), Expect = e-142
Identities = 468/539 (86%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 590 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 531
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 530 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 471
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| || |||||||| || |||||||||||||||
Sbjct: 470 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 411
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | || || |||||||| |||
Sbjct: 410 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 351
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||| ||||| | ||| |||||||||||||||
Sbjct: 350 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttct 291
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 699
|| ||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct: 290 ccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcca 231
Query: 700 ggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatc 759
|||||||||||||| || || ||||| ||||| || ||||||||||| || ||| |||
Sbjct: 230 ggctccatgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatc 171
Query: 760 aaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatg 819
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 170 aatcccttccatatgatcaatgccgaggtaacaatcataccgaggctgatgatctgcgtg 111
Query: 820 agcacttggcggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|| || ||||||| |||||| || ||||||||||||| | ||| |||| |||||||||
Sbjct: 110 aggacctggcggacctgcatcgaccggatcgactccacctggtcgccgatgaaccccat 52
>gb|AV924501.1|AV924501 AV924501 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14m22 5', mRNA sequence
Length = 667
Score = 505 bits (255), Expect = e-142
Identities = 468/539 (86%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 608 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 549
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 548 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 489
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| || |||||||| || |||||||||||||||
Sbjct: 488 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 429
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | || || |||||||| |||
Sbjct: 428 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 369
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||| ||||| | ||| |||||||||||||||
Sbjct: 368 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttct 309
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 699
|| ||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct: 308 ccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcca 249
Query: 700 ggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatc 759
|||||||||||||| || || ||||| ||||| || ||||||||||| || ||| |||
Sbjct: 248 ggctccatgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatc 189
Query: 760 aaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatg 819
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 188 aatcccttccatatgatcaatgccgaggtaacaatcataccgaggctgatgatctgcgtg 129
Query: 820 agcacttggcggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|| || ||||||| |||||| || ||||||||||||| | ||| |||| |||||||||
Sbjct: 128 aggacctggcggacctgcatcgaccggatcgactccacctggtcgccgatgaaccccat 70
>gb|BM817120.1|BM817120 HC110B07_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC110B07_T3.ab1 similar to Leucyl aminopeptidase,Xaa-Pro
dipeptidase,Signal peptidase I,Methionyl
aminopeptidase,Membrane alanine aminopeptidase,Cytosol
non-specific dipeptidase,Peptidyl-dipeptidase
A,Tripeptide aminopeptidase,Penicillopepsin,Transferred
entry: 3.4.21.89,, mRNA sequence
Length = 905
Score = 505 bits (255), Expect = e-142
Identities = 468/539 (86%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 663 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 604
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 603 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 544
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| || |||||||| || |||||||||||||||
Sbjct: 543 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 484
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | || || |||||||| |||
Sbjct: 483 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 424
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||| ||||| | ||| |||||||||||||||
Sbjct: 423 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttct 364
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 699
|| ||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct: 363 ccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcca 304
Query: 700 ggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatc 759
|||||||||||||| || || ||||| ||||| || ||||||||||| || ||| |||
Sbjct: 303 ggctccatgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatc 244
Query: 760 aaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatg 819
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 243 aatcccttccatatgatcaatgccgaggtaacaatcataccgaggctgatgatctgcgtg 184
Query: 820 agcacttggcggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|| || ||||||| |||||| || ||||||||||||| | ||| |||| |||||||||
Sbjct: 183 aggacctggcggacctgcatcgaccggatcgactccacctggtcgccgatgaaccccat 125
>gb|BQ460152.1|BQ460152 HA07B05r HA Hordeum vulgare subsp. vulgare cDNA clone HA07B05
5-PRIME, mRNA sequence
Length = 652
Score = 505 bits (255), Expect = e-142
Identities = 468/539 (86%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 593 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 534
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 533 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 474
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| || |||||||| || |||||||||||||||
Sbjct: 473 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 414
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | || || |||||||| |||
Sbjct: 413 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 354
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||| ||||| | ||| |||||||||||||||
Sbjct: 353 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttct 294
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 699
|| ||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct: 293 ccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcca 234
Query: 700 ggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatc 759
|||||||||||||| || || ||||| ||||| || ||||||||||| || ||| |||
Sbjct: 233 ggctccatgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatc 174
Query: 760 aaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatg 819
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 173 aatcccttccatatgatcaatgccgaggtaacaatcataccgaggctgatgatctgcgtg 114
Query: 820 agcacttggcggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|| || ||||||| |||||| || ||||||||||||| | ||| |||| |||||||||
Sbjct: 113 aggacctggcggacctgcatcgaccggatcgactccacctggtcgccgatgaaccccat 55
>gb|BU970301.1|BU970301 HB14D20r BC Hordeum vulgare subsp. vulgare cDNA clone HB14D20
5-PRIME, mRNA sequence
Length = 638
Score = 502 bits (253), Expect = e-140
Identities = 451/517 (87%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 531 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 472
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 471 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 412
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| || |||||||| || |||||||||||||||
Sbjct: 411 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 352
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | || || |||||||| |||
Sbjct: 351 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 292
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||| ||||| | ||| |||||||||||||||
Sbjct: 291 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttct 232
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 699
|| ||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct: 231 ccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcca 172
Query: 700 ggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatc 759
|||||||||||||| || || ||||| ||||| || ||||||||||| || ||| |||
Sbjct: 171 ggctccatgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatc 112
Query: 760 aaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatg 819
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 111 aatcccttccatatgatcaatgccgaggtaacaatcataccgaggctgatgatctgcgtg 52
Query: 820 agcacttggcggatctgcatggagcggatcgactcca 856
|| || ||||||| |||||| || |||||||||||||
Sbjct: 51 aggacctggcggacctgcatcgaccggatcgactcca 15
>gb|BQ766601.1|BQ766601 EBro08_SQ006_G17_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_G17 5', mRNA sequence
Length = 582
Score = 496 bits (250), Expect = e-139
Identities = 460/530 (86%)
Strand = Plus / Minus
Query: 349 gttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcagtc 408
||||||||||||| |||||| ||||||||||| ||||||||||||| || |||||||||
Sbjct: 581 gttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggcttctcagtc 522
Query: 409 atgataattgtaacccagccaacatatggaaggtagcccaccgcacgtcccataatgtgg 468
|| | ||| |||||||| ||||||||||| || ||||| || || ||||||||||||||
Sbjct: 521 atcacaatagtaacccacccaacatatggtagatagcctacagcccgtcccataatgtga 462
Query: 469 tgttgctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattg 528
|| | ||| ||||||||||| || |||||||| || |||||||||||||||||||||||
Sbjct: 461 tgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattatta 402
Query: 529 tcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcact 588
|||||||| |||||||| || |||||| || | || || |||||||| |||||||||||
Sbjct: 401 tcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatcaca 342
Query: 589 cggtggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcga 648
||||| ||||||||||| ||||| ||||| | ||| ||||||||||||||||| |||||
Sbjct: 341 cggtgaacaattggaatttcacggccatcaatattaaaaacaactatttctccagtgcgg 282
Query: 649 ataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccatg 708
|||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 281 ataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctccatg 222
Query: 709 ctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatcaaacccttc 768
||||| || || ||||| ||||| || ||||||||||| || ||| ||||| ||||||
Sbjct: 221 ctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatcaatcccttc 162
Query: 769 catatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatgagcacttgg 828
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||| || |||
Sbjct: 161 catatgatcaatgccgaggtaacaatcataccgaggctgatgatctgcgtgaggacctgg 102
Query: 829 cggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|||| |||||| || ||||||||||||| | ||| |||| |||||||||
Sbjct: 101 cggacctgcatcgaccggatcgactccacctggtcgccgatgaaccccat 52
>gb|AV926409.1|AV926409 AV926409 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19e07 5', mRNA sequence
Length = 620
Score = 478 bits (241), Expect = e-133
Identities = 451/521 (86%)
Strand = Plus / Minus
Query: 358 agcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcagtcatgataatt 417
|||| |||||| ||||||||||| ||||||||||||| || ||||||||||| | |||
Sbjct: 620 agcaggcccagcgcgccaatcagaaggtacttaataatcggcttctcagtcatcacaata 561
Query: 418 gtaacccagccaacatatggaaggtagcccaccgcacgtcccataatgtggtgttgctgg 477
|||||||| ||||||||||| || ||||| || || |||||||||||||| || | |||
Sbjct: 560 gtaacccacccaacatatggtagatagcctacagcccgtcccataatgtgatgcttctga 501
Query: 478 agccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcacctttg 537
||||||||||| || |||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 500 agccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattattatcacctttc 441
Query: 538 gtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggtggaca 597
|||||||| || |||||| || | || || |||||||| ||||||||||| ||||| |||
Sbjct: 440 gtgaggatatcaacttctccactttcttggcgttcatgaaccttaatcacacggtgaaca 381
Query: 598 attggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaataggatct 657
|||||||| ||||| ||||| | ||| ||||||||||||||||| ||||| |||||||||
Sbjct: 380 attggaatttcacggccatcaatattaaaaacaactatttctccagtgcggataggatct 321
Query: 658 ttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccatgctacccgag 717
| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 320 tggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctccatgctaccagaa 261
Query: 718 agcaccactacaactggtgactcgctccccgtgaaaactatcaaacccttccatatgatt 777
|| ||||| ||||| || ||||||||||| || ||| ||||| ||||||||||||||
Sbjct: 260 agaaccaccacaaccggcgactcgctccctgtcgcaaccatcaatcccttccatatgatc 201
Query: 778 aatgcagaggtaacaatcataccgaggctgatgatctgcatgagcacttggcggatctgc 837
||||| ||||||||||||||||||||||||||||||||| |||| || ||||||| ||||
Sbjct: 200 aatgccgaggtaacaatcataccgaggctgatgatctgcgtgaggacctggcggacctgc 141
Query: 838 atggagcggatcgactccatcgtgtctccgacgaaccccat 878
|| || ||||||||||||| | ||| |||| |||||||||
Sbjct: 140 atcgaccggatcgactccacctggtcgccgatgaaccccat 100
>gb|BM098110.2|BM098110 EBpi03_SQ002_J08_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_J08 5', mRNA sequence
Length = 624
Score = 478 bits (241), Expect = e-133
Identities = 468/541 (86%), Gaps = 2/541 (0%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaag-cccagtgcgccaatcagcaggtacttaataaatgg 398
|||||||| ||||||||||||| | ||||| ||||||||||| ||||||||||||| ||
Sbjct: 577 tctttcgatgttatgaccagcagggcccagcgcgccaatcagaaggtacttaataatcgg 518
Query: 399 tttctcagtcatgataattgtaacccagcc-aacatatggaaggtagcccaccgcacgtc 457
||||||||||| | ||| |||||||| || ||||||||| || ||||| || || ||||
Sbjct: 517 cttctcagtcatcacaatagtaacccaccccaacatatggtagatagcctacagcccgtc 458
Query: 458 ccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatccc 517
|||||||||| || | ||| ||||||||||| || |||||||| || |||||||||||||
Sbjct: 457 ccataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatccc 398
Query: 518 caaaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatgga 577
|||||||||| |||||||| |||||||| || |||||| || | || || |||||||| |
Sbjct: 397 caaaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaa 338
Query: 578 ccttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactattt 637
|||||||||| ||||| ||||||||||| ||||| ||||| | ||| |||||||||||||
Sbjct: 337 ccttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactattt 278
Query: 638 ctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatc 697
|||| ||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||
Sbjct: 277 ctccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatc 218
Query: 698 caggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaacta 757
|||||||||||||||| || || ||||| ||||| || ||||||||||| || ||| |
Sbjct: 217 caggctccatgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaacca 158
Query: 758 tcaaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgca 817
|||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 157 tcaatcccttccatatgatcaatgccgaggtaacaatcataccgaggctgatgatctgcg 98
Query: 818 tgagcacttggcggatctgcatggagcggatcgactccatcgtgtctccgacgaacccca 877
|||| || ||||||| |||||| || ||||||||||||| | ||| |||| ||||||||
Sbjct: 97 tgaggacctggcggacctgcatcgaccggatcgactccacctggtcgccgatgaacccca 38
Query: 878 t 878
|
Sbjct: 37 t 37
>gb|BU982068.1|BU982068 HA25G22r HA Hordeum vulgare subsp. vulgare cDNA clone HA25G22
5-PRIME, mRNA sequence
Length = 569
Score = 478 bits (241), Expect = e-133
Identities = 451/521 (86%)
Strand = Plus / Minus
Query: 358 agcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcagtcatgataatt 417
|||| |||||| ||||||||||| ||||||||||||| || ||||||||||| | |||
Sbjct: 569 agcaggcccagcgcgccaatcagaaggtacttaataatcggcttctcagtcatcacaata 510
Query: 418 gtaacccagccaacatatggaaggtagcccaccgcacgtcccataatgtggtgttgctgg 477
|||||||| ||||||||||| || ||||| || || |||||||||||||| || | |||
Sbjct: 509 gtaacccacccaacatatggtagatagcctacagcccgtcccataatgtgatgcttctga 450
Query: 478 agccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcacctttg 537
||||||||||| || |||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 449 agccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattattatcacctttc 390
Query: 538 gtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggtggaca 597
|||||||| || |||||| || | || || |||||||| ||||||||||| ||||| |||
Sbjct: 389 gtgaggatatcaacttctccactttcttggcgttcatgaaccttaatcacacggtgaaca 330
Query: 598 attggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaataggatct 657
|||||||| ||||| ||||| | ||| ||||||||||||||||| ||||| |||||||||
Sbjct: 329 attggaatttcacggccatcaatattaaaaacaactatttctccagtgcggataggatct 270
Query: 658 ttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccatgctacccgag 717
| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 269 tggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctccatgctaccagaa 210
Query: 718 agcaccactacaactggtgactcgctccccgtgaaaactatcaaacccttccatatgatt 777
|| ||||| ||||| || ||||||||||| || ||| ||||| ||||||||||||||
Sbjct: 209 agaaccaccacaaccggcgactcgctccctgtcgcaaccatcaatcccttccatatgatc 150
Query: 778 aatgcagaggtaacaatcataccgaggctgatgatctgcatgagcacttggcggatctgc 837
||||| ||||||||||||||||||||||||||||||||| |||| || ||||||| ||||
Sbjct: 149 aatgccgaggtaacaatcataccgaggctgatgatctgcgtgaggacctggcggacctgc 90
Query: 838 atggagcggatcgactccatcgtgtctccgacgaaccccat 878
|| || ||||||||||||| | ||| |||| |||||||||
Sbjct: 89 atcgaccggatcgactccacctggtcgccgatgaaccccat 49
>gb|CV061961.1|CV061961 BNEL74g8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL74g8 5' similar to signal
peptidase, putative, mRNA sequence
Length = 710
Score = 476 bits (240), Expect = e-133
Identities = 467/540 (86%), Gaps = 2/540 (0%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 599 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 540
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 539 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 480
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| || |||||||| || |||||||||||||||
Sbjct: 479 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 420
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | || || |||||||| |||
Sbjct: 419 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 360
Query: 580 ttaatcactcggtggacaattggaatctcacga-ccatcgacattgaaaacaactatttc 638
|||||||| ||||| ||||||||| | ||||| ||||| | ||| ||||||||||||||
Sbjct: 359 ttaatcacacggtgaacaattggatt-tcacgggccatcaatattaaaaacaactatttc 301
Query: 639 tcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcc 698
||| ||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||
Sbjct: 300 tccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcc 241
Query: 699 aggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactat 758
||||||||||||||| || || ||||| ||||| || ||||||||||| || ||| ||
Sbjct: 240 aggctccatgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccat 181
Query: 759 caaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcat 818
||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 180 caatcccttccatatgatcaatgccgaggtaacaatcataccgaggctgatgatctgcgt 121
Query: 819 gagcacttggcggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
||| || ||||||| |||||| || ||||||||||||| | ||| |||| |||||||||
Sbjct: 120 gaggacctggcggacctgcatcgaccggatcgactccacctggtcgccgatgaaccccat 61
>gb|BG415596.2|BG415596 HVSMEk0007C06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007C06f, mRNA sequence
Length = 671
Score = 474 bits (239), Expect = e-132
Identities = 464/539 (86%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||||||||||| ||| | ||||||||||| ||||||||||||| ||
Sbjct: 584 tctttcgatgttatgaccagcaggccaggcgcgccaatcagaaggtacttaataatcggc 525
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 524 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 465
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| | |||||||| || |||||||||||||||
Sbjct: 464 ataatgtgatgcttctgaagccaaagctgccattgtgcatacaaaagtcggtcatcccca 405
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | || || |||||||| |||
Sbjct: 404 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 345
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||| ||||| | ||| |||||||||||||||
Sbjct: 344 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttct 285
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 699
|| ||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct: 284 ccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcca 225
Query: 700 ggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatc 759
|||||||||||||| || || ||||| ||||| || ||||||||||| || ||| |||
Sbjct: 224 ggctccatgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatc 165
Query: 760 aaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatg 819
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 164 aatcccttccatatgatcaatgccgaggtaacaatcataccgaggctgatgatctgcgtg 105
Query: 820 agcacttggcggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|| || ||||||| ||||| || ||||||||||||| | ||| |||| |||||||||
Sbjct: 104 aggacctggcggacatgcatcgaccggatcgactccacctggtcgccgatgaaccccat 46
>gb|AV929590.1|AV929590 AV929590 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14m22 3', mRNA sequence
Length = 698
Score = 474 bits (239), Expect = e-132
Identities = 451/519 (86%), Gaps = 2/519 (0%)
Strand = Plus / Plus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 163 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 222
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 223 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 282
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| || |||||||| || |||||||||||||||
Sbjct: 283 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 342
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | || || |||||||| |||
Sbjct: 343 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 402
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||| ||||| | ||| |||||||||||||||
Sbjct: 403 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttct 462
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 699
|| ||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct: 463 ccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcca 522
Query: 700 ggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatc 759
|||||||||||||| || || ||||| ||||| || ||||||||||| || ||| |||
Sbjct: 523 ggctccatgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatc 582
Query: 760 aaacccttccatatgattaatg-cagaggtaacaatcataccgaggctgatga-tctgca 817
|| |||||||||||||| |||| | |||||||||||||||||||||||||||| |||||
Sbjct: 583 aatcccttccatatgatcaatgcccgaggtaacaatcataccgaggctgatgattctgcg 642
Query: 818 tgagcacttggcggatctgcatggagcggatcgactcca 856
|||| || ||||||| |||||| || |||||||||||||
Sbjct: 643 tgaggacctggcggacctgcatcgaccggatcgactcca 681
>gb|CV057135.1|CV057135 BNEL24d4 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL24d4 5' similar to signal
peptidase, putative, mRNA sequence
Length = 602
Score = 474 bits (239), Expect = e-132
Identities = 457/530 (86%)
Strand = Plus / Minus
Query: 349 gttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcagtc 408
||||||||||||| ||| || ||||||||||| ||||||||||||| || | |||||||
Sbjct: 600 gttatgaccagcaggccaagcgcgccaatcagaaggtacttaataatcggctnctcagtc 541
Query: 409 atgataattgtaacccagccaacatatggaaggtagcccaccgcacgtcccataatgtgg 468
|| | ||| |||||||| ||||||||||| || ||||| || || ||||||||||||||
Sbjct: 540 atcacaatagtaacccacccaacatatggtagatagcctacagcccgtcccataatgtga 481
Query: 469 tgttgctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattg 528
|| | ||| ||||||||||| || |||||||| || |||||||||||||||||||||||
Sbjct: 480 tgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattatta 421
Query: 529 tcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcact 588
|||||||| |||||||| || |||||| || | || || |||||||| |||||||||||
Sbjct: 420 tcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatcaca 361
Query: 589 cggtggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcga 648
||||| ||||||||||| || || ||||| | ||| ||||||||||||||||| |||||
Sbjct: 360 cggtgaacaattggaatttcgcggccatcaatattaaaaacaactatttctccagtgcgg 301
Query: 649 ataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccatg 708
|||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 300 ataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctccatg 241
Query: 709 ctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatcaaacccttc 768
||||| || || ||||| ||||| || ||||||||||| || ||| ||||| ||||||
Sbjct: 240 ctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatcaatcccttc 181
Query: 769 catatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatgagcacttgg 828
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||| || |||
Sbjct: 180 catatgatcaatgccgaggtaacaatcataccgaggctgatgatctgcgtgaggacctgg 121
Query: 829 cggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|||| |||||| || ||||||||||||| | ||| |||| |||||||||
Sbjct: 120 cggacctgcatcgaccggatcgactccacctggtcgccgatgaaccccat 71
>gb|BQ762174.1|BQ762174 EBro01_SQ005_D05_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_D05 5', mRNA sequence
Length = 599
Score = 462 bits (233), Expect = e-128
Identities = 469/544 (86%), Gaps = 4/544 (0%)
Strand = Plus / Minus
Query: 339 atctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatgg 398
||||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 583 atctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcgg 524
Query: 399 tttctcagtcatgataattgtaacccagcc--aacatatggaaggtagcccaccgcacgt 456
||||||||||| | ||| |||||||| || ||||||||| || ||||| || || |||
Sbjct: 523 cttctcagtcatcacaatagtaacccaccccnaacatatggtagatagcctacagcccgt 464
Query: 457 ccc-ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatc 515
||| |||||||| || | ||| ||||||||||| || |||||||| || |||||||||||
Sbjct: 463 ccccataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatc 404
Query: 516 ccc-aaaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcat 574
||| ||||||||| |||||||| |||||||| || |||||| || | || || |||||||
Sbjct: 403 ccccaaaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcat 344
Query: 575 ggaccttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaacta 634
| ||||||||||| ||||| ||||||||||| ||||| ||||| | ||| ||||||||||
Sbjct: 343 gaaccttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaacta 284
Query: 635 tttctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaa 694
||||||| ||||| |||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 283 tttctccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaa 224
Query: 695 atccaggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaa 754
||||||||||||||||||| || || ||||| ||||| || ||||||||||| || ||
Sbjct: 223 atccaggctccatgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaa 164
Query: 755 ctatcaaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgatct 814
| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 163 ccatcaatcccttccatatgatcaatgccgaggtaacaatcataccgaggctgatgatct 104
Query: 815 gcatgagcacttggcggatctgcatggagcggatcgactccatcgtgtctccgacgaacc 874
|| |||| || ||||||| |||||| || ||||||||||||| | ||| |||| |||||
Sbjct: 103 gcgtgaggacctggcggacctgcatcgaccggatcgactccacctggtcgccgatgaacc 44
Query: 875 ccat 878
||||
Sbjct: 43 ccat 40
>gb|BF618752.2|BF618752 HVSMEc0007K15f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0007K15f, mRNA sequence
Length = 792
Score = 444 bits (224), Expect = e-123
Identities = 457/532 (85%), Gaps = 2/532 (0%)
Strand = Plus / Minus
Query: 349 gttatgaccagcaagcccagtg-cgccaatcagcaggtacttaataaatggtttctcagt 407
||||||||||||| |||||| | |||||||||| ||||||||||||| || ||||||||
Sbjct: 635 gttatgaccagcaggcccagcggcgccaatcagaaggtacttaataatcggcttctcagt 576
Query: 408 catgataattgtaacccagcc-aacatatggaaggtagcccaccgcacgtcccataatgt 466
||| ||| ||||||| || ||||||||| || ||||| || | |||||||||||||
Sbjct: 575 catcccaatagtaaccccccccaacatatggtagatagcctacaggccgtcccataatgt 516
Query: 467 ggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattat 526
| || | ||| ||||||||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 515 gatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattat 456
Query: 527 tgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatca 586
| |||||||| |||||||| || |||||| || | || || |||||||| ||||||||||
Sbjct: 455 tatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatca 396
Query: 587 ctcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgc 646
| ||||| ||||||||||| ||||| ||||| | ||| ||||||||||||||||| ||||
Sbjct: 395 cacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttctccagtgc 336
Query: 647 gaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctcca 706
| |||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 335 ggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctcca 276
Query: 707 tgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatcaaaccct 766
||||||| || || ||||| ||||| || ||||||||||| || ||| ||||| ||||
Sbjct: 275 tgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatcaatccct 216
Query: 767 tccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatgagcactt 826
|||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| || |
Sbjct: 215 tccatatgatcaatgccgaggtaacaatcataccgaggctgatgatctgcgtgaggacct 156
Query: 827 ggcggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|||||| |||||| || ||||||||||||| | ||| |||| |||||||||
Sbjct: 155 ggcggacctgcatcgaccggatcgactccacctggtcgccgatgaaccccat 104
>gb|AV929597.1|AV929597 AV929597 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14n09 3', mRNA sequence
Length = 646
Score = 436 bits (220), Expect = e-121
Identities = 414/482 (85%)
Strand = Plus / Plus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 163 tctttcgntgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatnggc 222
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| || ||||| ||||||||||| || ||||| || || ||||||
Sbjct: 223 ttctcagtcatcacaatagtnacccanccaacatatggtagatagcctacagcccgtccc 282
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| || |||||||| || |||||||||| | ||
Sbjct: 283 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatncnca 342
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | | || |||||||| |||
Sbjct: 343 aaattattatcacctttcgtgaggatatcaacttctccactttnttggcgttcatgaacc 402
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||| |||| | ||| |||||||||||||||
Sbjct: 403 ttaatcacacggtgaacaattggaatttcacggncatcaatattaaaaacaactatttct 462
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 699
| ||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct: 463 ncagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcca 522
Query: 700 ggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatc 759
|||||||||||||| || || ||||| ||||| || ||||||||||| || ||| |||
Sbjct: 523 ggctccatgctaccagaaagaaccaccacaaccggcgactcgctccctgtngcaaccatc 582
Query: 760 aaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatg 819
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 583 aatcccttccatatgatcaatgccgaggtaacaatcataccgaggctgatgatctgcgtg 642
Query: 820 ag 821
||
Sbjct: 643 ag 644
>gb|BE454600.2|BE454600 HVSMEh0094K24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0094K24f, mRNA sequence
Length = 996
Score = 426 bits (215), Expect = e-118
Identities = 413/479 (86%)
Strand = Plus / Minus
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| ||| ||| |||| ||||||||||| || ||||| || || ||||||
Sbjct: 582 ttctcagtcatcccaatagtaccccacccaacatatggtagatagcctacagcccgtccc 523
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| || |||||||| || |||||||||||||||
Sbjct: 522 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 463
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | || || |||||||| |||
Sbjct: 462 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 403
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||| ||||| | ||| |||||||||||||||
Sbjct: 402 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttct 343
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 699
|| ||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct: 342 ccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcca 283
Query: 700 ggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatc 759
|||||||||||||| || || ||||| ||||| || ||||||||||| || ||| |||
Sbjct: 282 ggctccatgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatc 223
Query: 760 aaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatg 819
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 222 aatcccttccatatgatcaatgccgaggtaacaatcataccgaggctgatgatctgcgtg 163
Query: 820 agcacttggcggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|| || ||||||| |||||| || ||||||||||||| | ||| |||| |||||||||
Sbjct: 162 aggacctggcggacctgcatcgaccggatcgactccacctggtcgccgatgaaccccat 104
>gb|AV923126.1|AV923126 AV923126 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3o14 5', mRNA sequence
Length = 562
Score = 420 bits (212), Expect = e-116
Identities = 392/452 (86%)
Strand = Plus / Minus
Query: 427 ccaacatatggaaggtagcccaccgcacgtcccataatgtggtgttgctggagccaaagc 486
||||||||||| || ||||| || || |||||||||||||| || | ||| |||||||||
Sbjct: 561 ccaacatatggtagatagcctacagcccgtcccataatgtgatgcttctgaagccaaagc 502
Query: 487 tggccatgtgcatataatagtcggtcatccccaaaattattgtcacctttggtgaggatg 546
|| || |||||||| || ||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 501 tgcccttgtgcatacaaaagtcggtcatccccaaaattattatcacctttcgtgaggata 442
Query: 547 tccacttctgcagtgtcctgacgttcatggaccttaatcactcggtggacaattggaatc 606
|| |||||| || | || || |||||||| ||||||||||| ||||| |||||||||||
Sbjct: 441 tcaacttctccactttcttggcgttcatgaaccttaatcacacggtgaacaattggaatt 382
Query: 607 tcacgaccatcgacattgaaaacaactatttctcctgtgcgaataggatctttgctcata 666
||||| ||||| | ||| ||||||||||||||||| ||||| |||||||||| ||||||
Sbjct: 381 tcacggccatcaatattaaaaacaactatttctccagtgcggataggatcttggctcatg 322
Query: 667 tgcaaaaacaggatatcaccccttttaaatccaggctccatgctacccgagagcaccact 726
||||||||||| ||||||||||||||||||||||||||||||||||| || || |||||
Sbjct: 321 tgcaaaaacagaatatcaccccttttaaatccaggctccatgctaccagaaagaaccacc 262
Query: 727 acaactggtgactcgctccccgtgaaaactatcaaacccttccatatgattaatgcagag 786
||||| || ||||||||||| || ||| ||||| |||||||||||||| ||||| |||
Sbjct: 261 acaaccggcgactcgctccctgtcgcaaccatcaatcccttccatatgatcaatgccgag 202
Query: 787 gtaacaatcataccgaggctgatgatctgcatgagcacttggcggatctgcatggagcgg 846
|||||||||||||||||||||||||||||| |||| || ||||||| |||||| || |||
Sbjct: 201 gtaacaatcataccgaggctgatgatctgcgtgaggacctggcggacctgcatcgaccgg 142
Query: 847 atcgactccatcgtgtctccgacgaaccccat 878
|||||||||| | ||| |||| |||||||||
Sbjct: 141 atcgactccacctggtcgccgatgaaccccat 110
>gb|BM375286.2|BM375286 EBem06_SQ002_O05_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_O05 5', mRNA sequence
Length = 554
Score = 414 bits (209), Expect = e-114
Identities = 395/457 (86%)
Strand = Plus / Minus
Query: 422 cccagccaacatatggaaggtagcccaccgcacgtcccataatgtggtgttgctggagcc 481
|||| ||||||||||| || ||||| || || |||||||||||||| || | || ||||
Sbjct: 554 cccacccaacatatggtagatagcctacagcccgtcccataatgtgatgcttttgaagcc 495
Query: 482 aaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcacctttggtga 541
||||||| || |||||||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct: 494 aaagctgcccttgtgcatacaaaagtcggtcatccccaaaattattatcacctttcgtga 435
Query: 542 ggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggtggacaattg 601
|||| || |||||| || | || || |||||||| ||||||||||| ||||| |||||||
Sbjct: 434 ggatatcaacttctccactttcttggcgttcatgaaccttaatcacacggtgaacaattg 375
Query: 602 gaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaataggatctttgc 661
|||| ||||| ||||| | ||| ||||||||||||||||| ||||| |||||||||| ||
Sbjct: 374 gaatttcacggccatcaatattaaaaacaactatttctccagtgcggataggatcttggc 315
Query: 662 tcatatgcaaaaacaggatatcaccccttttaaatccaggctccatgctacccgagagca 721
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| || || |
Sbjct: 314 tcatgtgcaaaaacagaatatcaccccttttaaatccaggctccatgctaccagaaagaa 255
Query: 722 ccactacaactggtgactcgctccccgtgaaaactatcaaacccttccatatgattaatg 781
|||| ||||| || ||||||||||| || ||| ||||| |||||||||||||| ||||
Sbjct: 254 ccaccacaaccggcgactcgctccctgtcgcaaccatcaatcccttccatatgatcaatg 195
Query: 782 cagaggtaacaatcataccgaggctgatgatctgcatgagcacttggcggatctgcatgg 841
| ||||||||||||||||||||||||||||||||| |||| || ||||||| |||||| |
Sbjct: 194 ccgaggtaacaatcataccgaggctgatgatctgcgtgaggacctggcggacctgcatcg 135
Query: 842 agcggatcgactccatcgtgtctccgacgaaccccat 878
| ||||||||||||| | ||| |||| |||||||||
Sbjct: 134 accggatcgactccacctggtcgccgatgaaccccat 98
>gb|BU979844.1|BU979844 HA17I05r HA Hordeum vulgare subsp. vulgare cDNA clone HA17I05
5-PRIME, mRNA sequence
Length = 501
Score = 410 bits (207), Expect = e-113
Identities = 387/447 (86%)
Strand = Plus / Minus
Query: 432 atatggaaggtagcccaccgcacgtcccataatgtggtgttgctggagccaaagctggcc 491
|||||| || ||||| || || |||||||||||||| || | ||| ||||||||||| ||
Sbjct: 501 atatggtagatagcctacagcccgtcccataatgtgatgcttctgaagccaaagctgccc 442
Query: 492 atgtgcatataatagtcggtcatccccaaaattattgtcacctttggtgaggatgtccac 551
|||||||| || ||||||||||||||||||||||| |||||||| |||||||| || ||
Sbjct: 441 ttgtgcatacaaaagtcggtcatccccaaaattattatcacctttcgtgaggatatcaac 382
Query: 552 ttctgcagtgtcctgacgttcatggaccttaatcactcggtggacaattggaatctcacg 611
|||| || | || || |||||||| ||||||||||| ||||| ||||||||||| |||||
Sbjct: 381 ttctccactttcttggcgttcatgaaccttaatcacacggtgaacaattggaatttcacg 322
Query: 612 accatcgacattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaa 671
||||| | ||| ||||||||||||||||| ||||| |||||||||| |||||| |||||
Sbjct: 321 gccatcaatattaaaaacaactatttctccagtgcggataggatcttggctcatgtgcaa 262
Query: 672 aaacaggatatcaccccttttaaatccaggctccatgctacccgagagcaccactacaac 731
|||||| ||||||||||||||||||||||||||||||||||| || || ||||| |||||
Sbjct: 261 aaacagaatatcaccccttttaaatccaggctccatgctaccagaaagaaccaccacaac 202
Query: 732 tggtgactcgctccccgtgaaaactatcaaacccttccatatgattaatgcagaggtaac 791
|| ||||||||||| || ||| ||||| |||||||||||||| ||||| ||||||||
Sbjct: 201 cggcgactcgctccctgtcgcaaccatcaatcccttccatatgatcaatgccgaggtaac 142
Query: 792 aatcataccgaggctgatgatctgcatgagcacttggcggatctgcatggagcggatcga 851
||||||||||||||||||||||||| |||| || ||||||| |||||| || ||||||||
Sbjct: 141 aatcataccgaggctgatgatctgcgtgaggacctggcggacctgcatcgaccggatcga 82
Query: 852 ctccatcgtgtctccgacgaaccccat 878
||||| | ||| |||| |||||||||
Sbjct: 81 ctccacctggtcgccgatgaaccccat 55
>gb|BU988661.1|BU988661 HF18F08r HF Hordeum vulgare subsp. vulgare cDNA clone HF18F08
5-PRIME, mRNA sequence
Length = 528
Score = 410 bits (207), Expect = e-113
Identities = 387/447 (86%)
Strand = Plus / Minus
Query: 432 atatggaaggtagcccaccgcacgtcccataatgtggtgttgctggagccaaagctggcc 491
|||||| || ||||| || || |||||||||||||| || | ||| ||||||||||| ||
Sbjct: 528 atatggtagatagcctacagcccgtcccataatgtgatgcttctgaagccaaagctgccc 469
Query: 492 atgtgcatataatagtcggtcatccccaaaattattgtcacctttggtgaggatgtccac 551
|||||||| || ||||||||||||||||||||||| |||||||| |||||||| || ||
Sbjct: 468 ttgtgcatacaaaagtcggtcatccccaaaattattatcacctttcgtgaggatatcaac 409
Query: 552 ttctgcagtgtcctgacgttcatggaccttaatcactcggtggacaattggaatctcacg 611
|||| || | || || |||||||| ||||||||||| ||||| ||||||||||| |||||
Sbjct: 408 ttctccactttcttggcgttcatgaaccttaatcacacggtgaacaattggaatttcacg 349
Query: 612 accatcgacattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaa 671
||||| | ||| ||||||||||||||||| ||||| |||||||||| |||||| |||||
Sbjct: 348 gccatcaatattaaaaacaactatttctccagtgcggataggatcttggctcatgtgcaa 289
Query: 672 aaacaggatatcaccccttttaaatccaggctccatgctacccgagagcaccactacaac 731
|||||| ||||||||||||||||||||||||||||||||||| || || ||||| |||||
Sbjct: 288 aaacagaatatcaccccttttaaatccaggctccatgctaccagaaagaaccaccacaac 229
Query: 732 tggtgactcgctccccgtgaaaactatcaaacccttccatatgattaatgcagaggtaac 791
|| ||||||||||| || ||| ||||| |||||||||||||| ||||| ||||||||
Sbjct: 228 cggcgactcgctccctgtcgcaaccatcaatcccttccatatgatcaatgccgaggtaac 169
Query: 792 aatcataccgaggctgatgatctgcatgagcacttggcggatctgcatggagcggatcga 851
||||||||||||||||||||||||| |||| || ||||||| |||||| || ||||||||
Sbjct: 168 aatcataccgaggctgatgatctgcgtgaggacctggcggacctgcatcgaccggatcga 109
Query: 852 ctccatcgtgtctccgacgaaccccat 878
||||| | ||| |||| |||||||||
Sbjct: 108 ctccacctggtcgccgatgaaccccat 82
>gb|BU996898.1|BU996898 HI06C14r HI Hordeum vulgare subsp. vulgare cDNA clone HI06C14
5-PRIME, mRNA sequence
Length = 554
Score = 410 bits (207), Expect = e-113
Identities = 387/447 (86%)
Strand = Plus / Minus
Query: 432 atatggaaggtagcccaccgcacgtcccataatgtggtgttgctggagccaaagctggcc 491
|||||| || ||||| || || |||||||||||||| || | ||| ||||||||||| ||
Sbjct: 554 atatggtagatagcctacagcccgtcccataatgtgatgcttctgaagccaaagctgccc 495
Query: 492 atgtgcatataatagtcggtcatccccaaaattattgtcacctttggtgaggatgtccac 551
|||||||| || ||||||||||||||||||||||| |||||||| |||||||| || ||
Sbjct: 494 ttgtgcatacaaaagtcggtcatccccaaaattattatcacctttcgtgaggatatcaac 435
Query: 552 ttctgcagtgtcctgacgttcatggaccttaatcactcggtggacaattggaatctcacg 611
|||| || | || || |||||||| ||||||||||| ||||| ||||||||||| |||||
Sbjct: 434 ttctccactttcttggcgttcatgaaccttaatcacacggtgaacaattggaatttcacg 375
Query: 612 accatcgacattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaa 671
||||| | ||| ||||||||||||||||| ||||| |||||||||| |||||| |||||
Sbjct: 374 gccatcaatattaaaaacaactatttctccagtgcggataggatcttggctcatgtgcaa 315
Query: 672 aaacaggatatcaccccttttaaatccaggctccatgctacccgagagcaccactacaac 731
|||||| ||||||||||||||||||||||||||||||||||| || || ||||| |||||
Sbjct: 314 aaacagaatatcaccccttttaaatccaggctccatgctaccagaaagaaccaccacaac 255
Query: 732 tggtgactcgctccccgtgaaaactatcaaacccttccatatgattaatgcagaggtaac 791
|| ||||||||||| || ||| ||||| |||||||||||||| ||||| ||||||||
Sbjct: 254 cggcgactcgctccctgtcgcaaccatcaatcccttccatatgatcaatgccgaggtaac 195
Query: 792 aatcataccgaggctgatgatctgcatgagcacttggcggatctgcatggagcggatcga 851
||||||||||||||||||||||||| |||| || ||||||| |||||| || ||||||||
Sbjct: 194 aatcataccgaggctgatgatctgcgtgaggacctggcggacctgcatcgaccggatcga 135
Query: 852 ctccatcgtgtctccgacgaaccccat 878
||||| | ||| |||| |||||||||
Sbjct: 134 ctccacctggtcgccgatgaaccccat 108
>gb|AV927834.1|AV927834 AV927834 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3o14 3', mRNA sequence
Length = 620
Score = 406 bits (205), Expect = e-112
Identities = 379/437 (86%)
Strand = Plus / Plus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 184 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 243
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 244 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 303
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| || |||||||| || |||||||||||||||
Sbjct: 304 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 363
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | || || |||||||| |||
Sbjct: 364 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 423
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||| ||||| | ||| |||||||||||||||
Sbjct: 424 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttct 483
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 699
|| ||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct: 484 ccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcca 543
Query: 700 ggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatc 759
|||||||||||||| || || ||||| ||||| || ||||||||||| || ||| |||
Sbjct: 544 ggctccatgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatc 603
Query: 760 aaacccttccatatgat 776
|| ||||||||||||||
Sbjct: 604 aatcccttccatatgat 620
>gb|BU998847.1|BU998847 HI12F13r HI Hordeum vulgare subsp. vulgare cDNA clone HI12F13
5-PRIME, mRNA sequence
Length = 640
Score = 406 bits (205), Expect = e-112
Identities = 390/452 (86%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 462 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 403
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 402 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 343
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| || |||||||| || |||||||||||||||
Sbjct: 342 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 283
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | || || |||||||| |||
Sbjct: 282 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 223
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||| ||||| | ||| |||||||||||||||
Sbjct: 222 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttct 163
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 699
|| ||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct: 162 ccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcca 103
Query: 700 ggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatc 759
|||||||||||||| || || ||||| ||||| || ||||||||||| || ||| |||
Sbjct: 102 ggctccatgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatc 43
Query: 760 aaacccttccatatgattaatgcagaggtaac 791
|| ||||||||||| | ||||| ||||||||
Sbjct: 42 aatcccttccatatantcaatgccgaggtaac 11
>gb|BU988940.1|BU988940 HF19D13r HF Hordeum vulgare subsp. vulgare cDNA clone HF19D13
5-PRIME, mRNA sequence
Length = 495
Score = 391 bits (197), Expect = e-107
Identities = 350/401 (87%)
Strand = Plus / Minus
Query: 478 agccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcacctttg 537
||||||||||| || |||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 482 agccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattattatcacctttc 423
Query: 538 gtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggtggaca 597
|||||||| || |||||| || | || || |||||||| ||||||||||| ||||| |||
Sbjct: 422 gtgaggatatcaacttctccactttcttggcgttcatgaaccttaatcacacggtgaaca 363
Query: 598 attggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaataggatct 657
|||||||| ||||| ||||| | ||| ||||||||||||||||| ||||| |||||||||
Sbjct: 362 attggaatttcacggccatcaatattaaaaacaactatttctccagtgcggataggatct 303
Query: 658 ttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccatgctacccgag 717
| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 302 tggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctccatgctaccagaa 243
Query: 718 agcaccactacaactggtgactcgctccccgtgaaaactatcaaacccttccatatgatt 777
|| ||||| ||||| || ||||||||||| || ||| ||||| ||||||||||||||
Sbjct: 242 agaaccaccacaaccggcgactcgctccctgtcgcaaccatcaatcccttccatatgatc 183
Query: 778 aatgcagaggtaacaatcataccgaggctgatgatctgcatgagcacttggcggatctgc 837
||||| ||||||||||||||||||||||||||||||||| |||| || ||||||| ||||
Sbjct: 182 aatgccgaggtaacaatcataccgaggctgatgatctgcgtgaggacctggcggacctgc 123
Query: 838 atggagcggatcgactccatcgtgtctccgacgaaccccat 878
|| || ||||||||||||| | ||| |||| |||||||||
Sbjct: 122 atcgaccggatcgactccacctggtcgccgatgaaccccat 82
>gb|BF628481.3|BF628481 HVSMEb0006D18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006D18f, mRNA sequence
Length = 698
Score = 389 bits (196), Expect = e-106
Identities = 458/544 (84%), Gaps = 1/544 (0%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||| ||||||| |||||| ||||| ||||| |||||||| || | ||
Sbjct: 546 tctttcgaggttatcaccagcaggcccagcgcgccgatcagaaggtacttgatgatcggc 487
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||| | ||||| ||||| || || || |||
Sbjct: 486 ttctcagtcatcacaatggtaacccacccaacgtgcggaagatagcctacagcccgcccc 427
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|| ||||| || ||||| ||||| ||||| || || || || | ||||||||||||||
Sbjct: 426 atgatgtgatgctgctgaagccacagctgtccgtgcgcgtacagcagtcggtcatccccg 367
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
||||| ||||||||||| ||||||||||| ||||| ||| | ||||| |||||||| |||
Sbjct: 366 aaattgttgtcaccttttgtgaggatgtcaacttcagcactttcctggcgttcatgaacc 307
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 306 ttaatcacacggtgaacaattggaatttcacgaccatcaacattaaaaacaactatttct 247
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 699
|| || || || || ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 246 ccagtacggatgggttctttgctcatgcgcaaaaacaggatatcaccccttttgaatcca 187
Query: 700 ggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatc 759
|||||||||||||| || || ||||| || || || ||||| ||||| || ||| |||
Sbjct: 186 ggctccatgctaccaga-agaaccacgaccaccggggactcactcccagtcgcaaccatc 128
Query: 760 aaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatg 819
|| |||||||||||||| ||||| || ||||||||||||||||||||||||||||| |
Sbjct: 127 aaccccttccatatgatcaatgccgacgtaacaatcataccgaggctgatgatctgggag 68
Query: 820 agcacttggcggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccata 879
||||| ||||||| |||||| |||||||||||||||| | ||| |||| |||||||||
Sbjct: 67 agcacctggcggagctgcatcgagcggatcgactccacctggtcgccgatgaaccccatc 8
Query: 880 tcgc 883
||||
Sbjct: 7 tcgc 4
>gb|AV931292.1|AV931292 AV931292 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19e07 3', mRNA sequence
Length = 543
Score = 377 bits (190), Expect = e-103
Identities = 328/374 (87%)
Strand = Plus / Plus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 169 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 228
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 229 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 288
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| || |||||||| || |||||||||||||||
Sbjct: 289 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 348
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | || || |||||||| |||
Sbjct: 349 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 408
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||| ||||| | ||| |||||||||||||||
Sbjct: 409 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttct 468
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 699
|| ||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct: 469 ccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcca 528
Query: 700 ggctccatgctacc 713
||||||||||||||
Sbjct: 529 ggctccatgctacc 542
>gb|CB860013.1|CB860013 HI12F13w HI Hordeum vulgare subsp. vulgare cDNA clone HI12F13
3-PRIME, mRNA sequence
Length = 647
Score = 377 bits (190), Expect = e-103
Identities = 328/374 (87%)
Strand = Plus / Plus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 252 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 311
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 312 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 371
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| || |||||||| || |||||||||||||||
Sbjct: 372 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 431
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | || || |||||||| |||
Sbjct: 432 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 491
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||| ||||| | ||| |||||||||||||||
Sbjct: 492 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttct 551
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 699
|| ||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct: 552 ccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcca 611
Query: 700 ggctccatgctacc 713
||||||||||||||
Sbjct: 612 ggctccatgctacc 625
>gb|CV062596.1|CV062596 BNEL80g7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL80g7 5' similar to putative
signal peptidase subunit, mRNA sequence
Length = 699
Score = 375 bits (189), Expect = e-102
Identities = 438/521 (84%)
Strand = Plus / Minus
Query: 363 gcccagtgcgccaatcagcaggtacttaataaatggtttctcagtcatgataattgtaac 422
|||||| ||||| |||| |||||||| || | || ||||||||||| | ||| |||||
Sbjct: 566 gcccagcgcgccgatcaaaaggtacttgatgatcggcttctcagtcatcacaatggtaac 507
Query: 423 ccagccaacatatggaaggtagcccaccgcacgtcccataatgtggtgttgctggagcca 482
||| ||||| | |||||| ||||| || || || ||||| ||||| || ||||| |||||
Sbjct: 506 ccacccaacgtgtggaagatagcctacagcccgccccatgatgtgatgctgctgaagcca 447
Query: 483 aagctggccatgtgcatataatagtcggtcatccccaaaattattgtcacctttggtgag 542
||||| || || || || | |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 446 cagctgtccgtgcgcgtacagcagtcggtcatccccgaaattgttgtcaccttttgtgag 387
Query: 543 gatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggtggacaattgg 602
|||||| ||||| ||| | ||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct: 386 gatgtcaacttcagcactttcctggcgttcatgaaccttaatcacacggtgaacaattgg 327
Query: 603 aatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaataggatctttgct 662
||| ||||||||||| ||||| ||||||||||||||||| || || || || ||||||||
Sbjct: 326 aatttcacgaccatcaacattaaaaacaactatttctccagtacggatgggttctttgct 267
Query: 663 catatgcaaaaacaggatatcaccccttttaaatccaggctccatgctacccgagagcac 722
||| ||||||||||||||||||||||||| |||||||||||||||||||| || || ||
Sbjct: 266 catgcgcaaaaacaggatatcaccccttttgaatccaggctccatgctaccagaaagaac 207
Query: 723 cactacaactggtgactcgctccccgtgaaaactatcaaacccttccatatgattaatgc 782
||| || || || ||||| ||||| || ||| ||||| |||||||||||||| |||||
Sbjct: 206 cacgaccaccggggactcactcccagtcgcaaccatcaaccccttccatatgatcaatgc 147
Query: 783 agaggtaacaatcataccgaggctgatgatctgcatgagcacttggcggatctgcatgga 842
|| ||||||||||||||||||||||||||||| |||||| ||||||| |||||| ||
Sbjct: 146 cgacgtaacaatcataccgaggctgatgatctgggagagcacctggcggagctgcatcga 87
Query: 843 gcggatcgactccatcgtgtctccgacgaaccccatatcgc 883
|||||||||||||| | ||| |||| ||||||||| ||||
Sbjct: 86 gcggatcgactccacctggtcgccgatgaaccccatctcgc 46
>gb|CV060436.1|CV060436 BNEL58b11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL58b11 5' similar to putative
signal peptidase subunit, mRNA sequence
Length = 537
Score = 369 bits (186), Expect = e-100
Identities = 442/526 (84%), Gaps = 1/526 (0%)
Strand = Plus / Minus
Query: 358 agcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcagtcatgataatt 417
|||| |||||| ||||| ||||| |||||||| || | || ||||||||||| | |||
Sbjct: 537 agcaggcccagcgcgccgatcagaaggtacttgatgatcggcttctcagtcatcacaatg 478
Query: 418 gtaacccagccaacatatggaaggtagcccaccgcacgtcccataatgtggtgttgctgg 477
|||||||| ||||| | |||||| ||||| || || || ||||| ||||| || || ||
Sbjct: 477 gtaacccacccaacgtgtggaagatagcctacagcccgccccatgatgtgatgctg-tga 419
Query: 478 agccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcacctttg 537
||||| ||||| || || || || | |||||||||||||| ||||| |||||||||||
Sbjct: 418 agccacagctgtccgtgcgcgtacagcagtcggtcatccccgaaattgttgtcacctttt 359
Query: 538 gtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggtggaca 597
||||||||||| ||||| ||| | ||||| |||||||| ||||||||||| ||||| |||
Sbjct: 358 gtgaggatgtcaacttcagcactttcctggcgttcatgaaccttaatcacacggtgaaca 299
Query: 598 attggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaataggatct 657
|||||||| ||||||||||| ||||| ||||||||||||||||| || || || || |||
Sbjct: 298 attggaatttcacgaccatcaacattaaaaacaactatttctccagtacggatgggttct 239
Query: 658 ttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccatgctacccgag 717
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 238 ttgctcatgcgcaaaaacaggatatcaccccttttgaatccaggctccatgctaccagaa 179
Query: 718 agcaccactacaactggtgactcgctccccgtgaaaactatcaaacccttccatatgatt 777
|| ||||| || || || ||||| ||||| || ||| ||||| ||||||||||||||
Sbjct: 178 agaaccacgaccaccggggactcactcccagtcgcaaccatcaaccccttccatatgatc 119
Query: 778 aatgcagaggtaacaatcataccgaggctgatgatctgcatgagcacttggcggatctgc 837
||||| || ||||||||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct: 118 aatgccgacgtaacaatcataccgaggctgatgatctgggagagcacctggcggagctgc 59
Query: 838 atggagcggatcgactccatcgtgtctccgacgaaccccatatcgc 883
|| |||||||||||||||| | ||| |||| ||||||||| ||||
Sbjct: 58 atcgagcggatcgactccacctggtcgccgatgaaccccatctcgc 13
>gb|BQ657773.1|BQ657773 HA07B05u HA Hordeum vulgare subsp. vulgare cDNA clone HA07B05
3-PRIME, mRNA sequence
Length = 533
Score = 363 bits (183), Expect = 8e-099
Identities = 324/371 (87%)
Strand = Plus / Plus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||||||||||| |||||| |||||||||| ||||||||||||| ||
Sbjct: 163 tctttcgatgttatgaccagcaggcccagcgcgccaatcaaaaggtacttaataatcggc 222
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 223 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 282
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| || |||||||| || |||||||||||||||
Sbjct: 283 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 342
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | || || |||||||| |||
Sbjct: 343 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 402
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||| ||||| | ||| |||||||||||||||
Sbjct: 403 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttct 462
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 699
|| ||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct: 463 ccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcca 522
Query: 700 ggctccatgct 710
|||||||||||
Sbjct: 523 ggctccatgct 533
>gb|AL505905.1|AL505905 AL505905 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09N23V 5', mRNA sequence
Length = 455
Score = 351 bits (177), Expect = 3e-095
Identities = 368/431 (85%), Gaps = 3/431 (0%)
Strand = Plus / Minus
Query: 429 aacatatggaaggtagcccaccgcacgtcccat--aatgtggtgttgctggagccaaagc 486
||||||||| || ||||| || || ||||||| |||||| || | ||| |||||||||
Sbjct: 439 aacatatggtagatagccnacagcccgtcccaataaatgtgatgcttctgaagccaaagc 380
Query: 487 tggccatgtgcatataatagtcggtcatccccaaaattattgtcacctttggtgaggatg 546
|| || |||||||| || ||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 379 tgcccttgtgcatacaaaagtcggtcatccccaaaattattatcacctttcgtgaggata 320
Query: 547 tccacttctgcagtgtcctgacgttcatggaccttaatcactc-ggtggacaattggaat 605
|| |||| | || | || || |||||||| ||||||||||| | |||| |||||||||||
Sbjct: 319 tcaacttntccactttcttggcgttcatgaaccttaatcacactggtgaacaattggaat 260
Query: 606 ctcacgaccatcgacattgaaaacaactatttctcctgtgcgaataggatctttgctcat 665
||||| ||||| | ||| ||||||||||||||||| ||||| |||||||||| ||||||
Sbjct: 259 ttcacggccatcaatattaaaaacaactatttctccagtgcggataggatcttggctcat 200
Query: 666 atgcaaaaacaggatatcaccccttttaaatccaggctccatgctacccgagagcaccac 725
||||||||||| ||||||||||||||||||||||||||||||||||| || || ||| |
Sbjct: 199 gtgcaaaaacagaatatcaccccttttaaatccaggctccatgctaccagaaagaaccnc 140
Query: 726 tacaactggtgactcgctccccgtgaaaactatcaaacccttccatatgattaatgcaga 785
||||| || ||||||||||| || ||| ||||| |||||||||||||| ||||| ||
Sbjct: 139 cacaaccggcgactcgctccctgtcgcaaccatcaatcccttccatatgatcaatgccga 80
Query: 786 ggtaacaatcataccgaggctgatgatctgcatgagcacttggcggatctgcatggagcg 845
||||||| ||||||||||||||||||||||| |||| || ||||||| |||||| || ||
Sbjct: 79 ggtaacantcataccgaggctgatgatctgcgtgaggacctggcggacctgcatcgaccg 20
Query: 846 gatcgactcca 856
|||| ||||||
Sbjct: 19 gatcnactcca 9
>gb|BU980189.1|BU980189 HA18P01r HA Hordeum vulgare subsp. vulgare cDNA clone HA18P01
5-PRIME, mRNA sequence
Length = 438
Score = 347 bits (175), Expect = 5e-094
Identities = 328/379 (86%)
Strand = Plus / Minus
Query: 505 agtcggtcatccccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtcc 564
|||||||||||||| ||||| ||||||||||| ||||||||||| ||||| ||| | |||
Sbjct: 389 agtcggtcatccccgaaattgttgtcaccttttgtgaggatgtcaacttcagcactttcc 330
Query: 565 tgacgttcatggaccttaatcactcggtggacaattggaatctcacgaccatcgacattg 624
|| |||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||
Sbjct: 329 tggcgttcatgaaccttaatcacacggtgaacaattggaatttcacgaccatcaacatta 270
Query: 625 aaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatca 684
||||||||||||||||| || || || || ||||||||||| |||||||||||||||||
Sbjct: 269 aaaacaactatttctccagtacggatgggttctttgctcatgcgcaaaaacaggatatca 210
Query: 685 ccccttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctc 744
|||||||| |||||||||||||||||||| || || ||||| || || || ||||| |||
Sbjct: 209 ccccttttgaatccaggctccatgctaccagaaagaaccacgaccaccggggactcactc 150
Query: 745 cccgtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcataccgagg 804
|| || ||| ||||| |||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 149 ccagtcgcaaccatcaaccccttccatatgatcaatgccgacgtaacaatcataccgagg 90
Query: 805 ctgatgatctgcatgagcacttggcggatctgcatggagcggatcgactccatcgtgtct 864
||||||||||| |||||| ||||||| |||||| |||||||||||||||| | |||
Sbjct: 89 ctgatgatctgggagagcacctggcggagctgcatcgagcggatcgactccacctggtcg 30
Query: 865 ccgacgaaccccatatcgc 883
|||| ||||||||| ||||
Sbjct: 29 ccgatgaaccccatctcgc 11
>gb|AV916947.1|AV916947 AV916947 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20d06 5', mRNA sequence
Length = 450
Score = 341 bits (172), Expect = 3e-092
Identities = 307/352 (87%)
Strand = Plus / Minus
Query: 505 agtcggtcatccccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtcc 564
|||||||||||||| ||||| ||||||||||| ||||||||||| ||||| ||| | |||
Sbjct: 390 agtcggtcatccccgaaattgttgtcaccttttgtgaggatgtcaacttcagcactttcc 331
Query: 565 tgacgttcatggaccttaatcactcggtggacaattggaatctcacgaccatcgacattg 624
|| |||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||
Sbjct: 330 tggcgttcatgaaccttaatcacacggtgaacaattggaatttcacgaccatcaacatta 271
Query: 625 aaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatca 684
||||||||||||||||| || || || || ||||||||||| |||||||||||||||||
Sbjct: 270 aaaacaactatttctccagtacggatgggttctttgctcatgcgcaaaaacaggatatca 211
Query: 685 ccccttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctc 744
|||||||| |||||||||||||||||||| || || ||||| || || || ||||| |||
Sbjct: 210 ccccttttgaatccaggctccatgctaccagaaagaaccacgaccaccggggactcactc 151
Query: 745 cccgtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcataccgagg 804
|| || ||| ||||| |||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 150 ccagtcgcaaccatcaaccccttccatatgatcaatgccgacgtaacaatcataccgagg 91
Query: 805 ctgatgatctgcatgagcacttggcggatctgcatggagcggatcgactcca 856
||||||||||| |||||| ||||||| |||||| ||||||||||||||||
Sbjct: 90 ctgatgatctgggagagcacctggcggagctgcatcgagcggatcgactcca 39
>gb|BI952446.1|BI952446 HVSMEm0006H17f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0006H17f, mRNA sequence
Length = 825
Score = 325 bits (164), Expect = 2e-087
Identities = 339/398 (85%)
Strand = Plus / Minus
Query: 349 gttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcagtc 408
||||| ||||||| |||||| ||||||||||| ||||||||||||| || || ||||||
Sbjct: 593 gttatcaccagcaggcccagcgcgccaatcagaaggtacttaataatcggnttttcagtc 534
Query: 409 atgataattgtaacccagccaacatatggaaggtagcccaccgcacgtcccataatgtgg 468
|| | ||| || |||| ||||||||||| || ||||| || || ||||||||||||||
Sbjct: 533 atcacaatagtcccccacccaacatatggtagatagcctacagcccgtcccataatgtga 474
Query: 469 tgttgctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattg 528
|| | ||| ||||||||||| || |||||||| || |||||||||||||||||||||||
Sbjct: 473 tgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattatta 414
Query: 529 tcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcact 588
|| ||||| |||||||| || |||||| || | || || |||||||| ||||||||||
Sbjct: 413 tcccctttcgtgaggatatcaacttctccactttcttggcgttcatgacccttaatcaca 354
Query: 589 cggtggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcga 648
||||| ||||||||||| ||||| ||||| | ||| ||||||||||||||||| |||||
Sbjct: 353 cggtgaacaattggaatttcacgcccatcaatattaaaaacaactatttctccagtgcgg 294
Query: 649 ataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccatg 708
|||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 293 ataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctccatg 234
Query: 709 ctacccgagagcaccactacaactggtgactcgctccc 746
||||| || || ||| | |||| || |||||||||||
Sbjct: 233 ctaccagaaagaacctcctcaaccggngactcgctccc 196
Score = 105 bits (53), Expect = 3e-021
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 778 aatgcagaggtaacaatcataccgaggctgatgatctgcatgagcacttggcggatctgc 837
||||| ||||||||||||||||||||||||||||||||| |||| || ||||||| ||||
Sbjct: 164 aatgccgaggtaacaatcataccgaggctgatgatctgcgtgaggacctggcggacctgc 105
Query: 838 atggagcggatcgactccatcgtgtctccgacgaaccccat 878
|| || ||||||||||||| | ||| |||| |||||||||
Sbjct: 104 atcgaccggatcgactccacctggtcgccgatgaaccccat 64
>gb|BU988354.1|BU988354 HF17G09r HF Hordeum vulgare subsp. vulgare cDNA clone HF17G09
5-PRIME, mRNA sequence
Length = 480
Score = 311 bits (157), Expect = 2e-083
Identities = 391/469 (83%)
Strand = Plus / Minus
Query: 364 cccagtgcgccaatcagcaggtacttaataaatggtttctcagtcatgataattgtaacc 423
||||| ||||| ||||| |||||||| || | || ||||||||||| | ||| ||||||
Sbjct: 480 cccagcgcgccgatcagaaggtacttgatgatcggcttctcagtcatcacaatggtaacc 421
Query: 424 cagccaacatatggaaggtagcccaccgcacgtcccataatgtggtgttgctggagccaa 483
|| ||||| | ||||| ||||| || || || ||||| ||||| || ||||| |||||
Sbjct: 420 cacccaacgtgcggaagatagcctacagcccgccccatgatgtgatgctgctgaagccac 361
Query: 484 agctggccatgtgcatataatagtcggtcatccccaaaattattgtcacctttggtgagg 543
||||| || || || || | |||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 360 agctgtccgtgcgcgtacagcagtcggtcatccccgaaattgttgtcaccttttgtgagg 301
Query: 544 atgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggtggacaattgga 603
||||| ||||| ||| | ||||| |||||||| ||||||||||| ||||| |||||||||
Sbjct: 300 atgtcaacttcagcactttcctggcgttcatgaaccttaatcacacggtgaacaattgga 241
Query: 604 atctcacgaccatcgacattgaaaacaactatttctcctgtgcgaataggatctttgctc 663
|| || |||||||| ||||| ||||||||||||||||| || || || || |||||||||
Sbjct: 240 atttcgcgaccatcaacattaaaaacaactatttctccagtacggatgggttctttgctc 181
Query: 664 atatgcaaaaacaggatatcaccccttttaaatccaggctccatgctacccgagagcacc 723
|| ||||||||||||||||||||||||| ||||||||| ||||||||| || || |||
Sbjct: 180 atgcgcaaaaacaggatatcaccccttttgaatccaggcaacatgctaccagaaagaacc 121
Query: 724 actacaactggtgactcgctccccgtgaaaactatcaaacccttccatatgattaatgca 783
|| || || || ||||| ||||| || ||| ||||| |||||||||||||| |||||
Sbjct: 120 acgaccaccggggactcactcccagtcgcaaccatcaaccccttccatatgatcaatgcc 61
Query: 784 gaggtaacaatcataccgaggctgatgatctgcatgagcacttggcgga 832
|| ||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 60 gacgtaacaatcataccgaggctgatgatctgggagagcacctggcgga 12
>gb|AL511520.1|AL511520 AL511520 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08F10u 3',
mRNA sequence
Length = 545
Score = 293 bits (148), Expect = 6e-078
Identities = 292/339 (86%), Gaps = 1/339 (0%)
Strand = Plus / Plus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 202 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 261
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 262 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 321
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| || |||||||| || |||||||||||||||
Sbjct: 322 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 381
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | || || |||| ||| |||
Sbjct: 382 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttnatgaacc 441
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||| ||||| | ||| |||||||||||||||
Sbjct: 442 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttct 501
Query: 640 cctgtgcgaataggatctt-tgctcatatgcaaaaacag 677
|| ||||| |||||||||| |||||| |||||||||||
Sbjct: 502 ccagtgcggataggatcttgggctcatgtgcaaaaacag 540
>gb|BI950558.1|BI950558 HVSMEl0021F09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0021F09f, mRNA sequence
Length = 543
Score = 291 bits (147), Expect = 2e-077
Identities = 396/479 (82%)
Strand = Plus / Minus
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || |||| || || ||||||
Sbjct: 540 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcgtacagcccgtccc 481
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
||||||| || | ||| |||||||| || || |||||| | || |||||||||||||||
Sbjct: 480 ataatgtaatgcttctgaagccaaagatgcccttgtgcacacaaaagtcggtcatcccca 421
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
||| ||| |||||| | || ||||| || || | | | | || || | ||||| |||
Sbjct: 420 caataattatcacctctcgtcaggatatcgacatatccgctctcttggagatcatgaacc 361
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| |||||||| || ||||| ||||| | ||| |||||||||||| |
Sbjct: 360 ttaatcacacggtgaacaattgggatttcacggccatcaatattagaaacaactatttgt 301
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 699
|| ||||| ||||||| || |||||| ||||||||||| ||||||||||| |||||| ||
Sbjct: 300 ccagtgcggataggatattggctcatgtgcaaaaacagaatatcacccctcttaaataca 241
Query: 700 ggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatc 759
|||||||||||||| || || ||||| ||||| || ||||||||||| || ||| |||
Sbjct: 240 ggctccatgctaccagaaagaaccaccacaaccggcgactcgctccctgttgcaaccatc 181
Query: 760 aaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatg 819
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 180 aatcccttccatatgatcaatgccgaggtaacaatcataccgaggctgatgatctgcgtg 121
Query: 820 agcacttggcggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|| || ||||||| |||||| || ||||||||||||| | ||| |||| |||||||||
Sbjct: 120 aggacctggcggacctgcatcgaccggatcgactccaactggtcgccgatgaaccccat 62
>gb|BU980725.1|BU980725 HA21H24r HA Hordeum vulgare subsp. vulgare cDNA clone HA21H24
5-PRIME, mRNA sequence
Length = 312
Score = 285 bits (144), Expect = 1e-075
Identities = 271/312 (86%), Gaps = 1/312 (0%)
Strand = Plus / Minus
Query: 494 gtgcatataatagtcggtcatccccaaaattattgtcacctttggtgaggatgtccactt 553
||||||| || ||||||||||||||||||||||| |||||||| |||||||| || ||||
Sbjct: 312 gtgcatacaaaagtcggtcatccccaaaattattatcacctttcgtgaggatatcaactt 253
Query: 554 ctgcagtgtcctgacgttcatggaccttaatcactcggtggacaattggaatctcacgac 613
|| || | || || |||||||| ||||||||||| ||||| ||||||||||| ||||| |
Sbjct: 252 ctccactttcttggcgttcatgaaccttaatcacacggtgaacaattggaatttcacggc 193
Query: 614 catcgac-attgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaa 672
|||| | ||| ||||||||||||||||| ||||| |||||||||| |||||| ||||||
Sbjct: 192 catcaagtattaaaaacaactatttctccagtgcggataggatcttggctcatgtgcaaa 133
Query: 673 aacaggatatcaccccttttaaatccaggctccatgctacccgagagcaccactacaact 732
||||| | ||||||||||||||||||||||||||||||||| || || ||||| ||||
Sbjct: 132 aacagaagatcaccccttttaaatccaggctccatgctaccagaaagaaccaccgcaacc 73
Query: 733 ggtgactcgctccccgtgaaaactatcaaacccttccatatgattaatgcagaggtaaca 792
|| ||||||||||| || ||| ||||| |||||||||||||| ||||| |||||||||
Sbjct: 72 ggcgactcgctccctgtcgcaaccatcaatcccttccatatgatcaatgccgaggtaaca 13
Query: 793 atcataccgagg 804
||||||||||||
Sbjct: 12 atcataccgagg 1
>gb|BM372965.2|BM372965 EBma04_SQ002_J06_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_J06 5', mRNA sequence
Length = 516
Score = 268 bits (135), Expect = 3e-070
Identities = 258/299 (86%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 299 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 240
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 239 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 180
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| || |||||||| || |||||||||||||||
Sbjct: 179 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 120
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | || || |||||||| |||
Sbjct: 119 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 60
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttc 638
|||||||| ||||| ||||||||||| ||||| ||||| | ||| ||||||||||||||
Sbjct: 59 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttc 1
>gb|BF631450.3|BF631450 HVSMEb0015P19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015P19f, mRNA sequence
Length = 626
Score = 248 bits (125), Expect = 3e-064
Identities = 296/353 (83%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||| ||||||| |||||| ||||| ||||| |||||||| || | ||
Sbjct: 360 tctttcgaggttatcaccagcaggcccagcgcgccgatcagaaggtacttgatgatcggc 301
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||| | ||||| |||| || || || |||
Sbjct: 300 ttctcagtcatcacaatggtaacccacccaacgtgcggaagacagcctacagcccgcccc 241
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|| ||||| || ||||| ||||| ||||| || || || || | ||||||||||||||
Sbjct: 240 atgatgtgatgctgctgaagccacagctgtccgtgcgcgtacagcagtcggtcatccccg 181
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
||||| ||||||||||| ||||||||||| ||||| ||| | ||||| |||||||| |||
Sbjct: 180 aaattgttgtcaccttttgtgaggatgtcaacttcagcactttcctggcgttcatgaacc 121
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 120 ttaatcacacggtgaacaattggaatttcacgaccatcaacattaaaaacaactatttct 61
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcacccctttt 692
|| || || || || ||||||||||| |||||||||||||||||||||||||
Sbjct: 60 ccagtacggatgggttctttgctcatgcgcaaaaacaggatatcacccctttt 8
>gb|AV918196.1|AV918196 AV918196 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20d06 3', mRNA sequence
Length = 728
Score = 242 bits (122), Expect = 2e-062
Identities = 314/376 (83%), Gaps = 3/376 (0%)
Strand = Plus / Plus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||| ||||||| ||||| ||||||||||| |||||||| || | ||
Sbjct: 353 tctttcgaggttatcaccagcagacccagcgcgccaatcagaaggtacttgatgatcggc 412
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||| | ||||| ||||| || || || |||
Sbjct: 413 ttctcagtcatcacaatggtaacccacccaacgtgcggaagatagcctacagcccgcccc 472
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|| ||||| || ||||| ||||| ||||| || || || || | ||||||||||||||
Sbjct: 473 atgatgtgatgctgctgaagccacagctgtccgtgcgcgtacagcagtcggtcatccccg 532
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcct-gacgttcatggac 578
||||| ||||||||||| ||||||||||| ||||| ||| | |||| | |||||||| ||
Sbjct: 533 aaattgttgtcaccttttgtgaggatgtcaacttcagcactttccttggcgttcatgaac 592
Query: 579 cttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttc 638
||||||||| ||||| ||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 593 cttaatcacacggtgaacaattggaatttcacgaccatcaacattaaaaacaactatttc 652
Query: 639 tcctgt--gcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
||| || | || || ||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 653 tccagtacgggatggggttctttgctcatgcgcaaaaacaggatatcaccccttttgaat 712
Query: 697 ccaggctccatgctac 712
||||||| ||||||||
Sbjct: 713 ccaggctncatgctac 728
>gb|BM099716.2|BM099716 EBes01_SQ004_B06_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ004_B06 5', mRNA sequence
Length = 274
Score = 240 bits (121), Expect = 8e-062
Identities = 198/224 (88%)
Strand = Plus / Minus
Query: 633 tatttctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcacccctttt 692
||||||||| ||||| |||||||||| |||||| ||||||||||| ||||||||||||||
Sbjct: 238 tatttctccagtgcggataggatcttggctcatgtgcaaaaacagaatatcacccctttt 179
Query: 693 aaatccaggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaa 752
|||||||||||||||| |||| || || ||||| ||||| || ||||||||||| ||
Sbjct: 178 aaatccaggctccatgntaccagaaagaaccaccacaaccggcgactcgctccctgtcgc 119
Query: 753 aactatcaaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgat 812
||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 118 aaccatcaatcccttccatatgatcaatgccgaggtaacaatcataccgaggctgatgat 59
Query: 813 ctgcatgagcacttggcggatctgcatggagcggatcgactcca 856
|||| |||| || ||||||| |||||| || |||||||||||||
Sbjct: 58 ctgcgtgaggacctggcggacctgcatcgaccggatcgactcca 15
>gb|CB858204.1|CB858204 HI06C14w HI Hordeum vulgare subsp. vulgare cDNA clone HI06C14
3-PRIME, mRNA sequence
Length = 538
Score = 238 bits (120), Expect = 3e-061
Identities = 234/272 (86%)
Strand = Plus / Plus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 266 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 325
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 326 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 385
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| || |||||||| || |||||||||||||||
Sbjct: 386 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 445
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | || || |||||||| |||
Sbjct: 446 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 505
Query: 580 ttaatcactcggtggacaattggaatctcacg 611
|| ||||| ||||| ||||||||||| |||||
Sbjct: 506 ttcatcacacggtgaacaattggaatttcacg 537
>gb|CB858274.1|CB858274 HI06G14w HI Hordeum vulgare subsp. vulgare cDNA clone HI06G14
3-PRIME, mRNA sequence
Length = 528
Score = 236 bits (119), Expect = 1e-060
Identities = 227/263 (86%)
Strand = Plus / Plus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 266 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 325
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 326 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 385
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| || | ||| ||||||||||| || |||||||| || |||||||||||||||
Sbjct: 386 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 445
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || |||||| || | || || |||||||| |||
Sbjct: 446 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 505
Query: 580 ttaatcactcggtggacaattgg 602
|||||||| ||||| ||||||||
Sbjct: 506 ttaatcacacggtgaacaattgg 528
>gb|BF616598.2|BF616598 HVSMEc0010L09f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0010L09f, mRNA sequence
Length = 843
Score = 184 bits (93), Expect = 4e-045
Identities = 168/193 (87%)
Strand = Plus / Minus
Query: 686 cccttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctcc 745
|||||||||||||||||||||||||||| || || ||||| ||||| || ||||||||||
Sbjct: 200 cccttttaaatccaggctccatgctaccagaaagaaccaccacaaccggcgactcgctcc 141
Query: 746 ccgtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcataccgaggc 805
| || ||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 140 ctgtcgcaaccatcaatcccttccatatgatcaatgccgaggtaacaatcataccgaggc 81
Query: 806 tgatgatctgcatgagcacttggcggatctgcatggagcggatcgactccatcgtgtctc 865
||||||||||| |||| || ||||||| |||||| || ||||||||||||| | ||| |
Sbjct: 80 tgatgatctgcgtgaggacctggcggacctgcatcgaccggatcgactccacctggtcgc 21
Query: 866 cgacgaaccccat 878
||| |||||||||
Sbjct: 20 cgatgaaccccat 8
>gb|BE194698.3|BE194698 HVSMEh0086I19f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0086I19f, mRNA sequence
Length = 612
Score = 168 bits (85), Expect = 2e-040
Identities = 199/233 (85%), Gaps = 3/233 (1%)
Strand = Plus / Minus
Query: 625 aaaacaactatttctcctgtgcgaataggatctttgc-tcatatgcaaaaacaggatatc 683
||||||||||||| ||| || ||||||| || || || |||| ||||||||||| |||||
Sbjct: 314 aaaacaactatttttccagttcgaatag-attttggcgtcatgtgcaaaaacagaatatc 256
Query: 684 accccttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgct 743
|||||||| ||||||||||||||| | || || || ||||| ||||| || ||||||||
Sbjct: 255 tcccctttttaatccaggctccatgtt-ccagaaagaaccaccacaaccggcgactcgct 197
Query: 744 ccccgtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcataccgag 803
||| || ||| ||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 196 ccctgtcgcaaccatcaatcccttccatatgatcaatgccgaggtaacaatcataccgag 137
Query: 804 gctgatgatctgcatgagcacttggcggatctgcatggagcggatcgactcca 856
||||||||||||| |||| || ||||||| ||||| || |||||||||||||
Sbjct: 136 gctgatgatctgcgtgaggacctggcggacatgcatcgaccggatcgactcca 84
>gb|AL503150.1|AL503150 AL503150 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09N23u 3', mRNA sequence
Length = 474
Score = 163 bits (82), Expect = 1e-038
Identities = 209/250 (83%), Gaps = 2/250 (0%)
Strand = Plus / Plus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||| | ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 223 tctttcnatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 282
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaagg-tagcccaccgcacgtcc 458
||||||||||| | ||| | |||||| ||| ||||||| ||| ||||| || || |||||
Sbjct: 283 ttctcagtcatcacaataggaacccacccancatatggtaggatagcctacagcccgtcc 342
Query: 459 cataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccc 518
|| |||||| || | ||| ||||||||||| || || ||||| || ||||||||||||||
Sbjct: 343 canaatgtgatgcttctgaagccaaagctgcccttgngcatacaaaagtcggtcatcccc 402
Query: 519 aaaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttca-tgga 577
||||||||| |||||||| | |||||| || |||||| || | || || |||||| || |
Sbjct: 403 aaaattattatcacctttcgcgaggatatcaacttctccactttcttggcgttcattgaa 462
Query: 578 ccttaatcac 587
||||||||||
Sbjct: 463 ccttaatcac 472
>gb|BQ758014.1|BQ758014 EBes01_SQ001_B04_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ001_B04 5', mRNA sequence
Length = 189
Score = 127 bits (64), Expect = 8e-028
Identities = 112/128 (87%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 142 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 83
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
||||||||||| | ||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 82 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 23
Query: 460 ataatgtg 467
||||||||
Sbjct: 22 ataatgtg 15
>gb|BM441188.2|BM441188 EBed02_SQ002_K20_R endosperm, 8 DPA, no treatment, cv Optic, EBed02
Hordeum vulgare subsp. vulgare cDNA clone
EBed02_SQ002_K20 5', mRNA sequence
Length = 221
Score = 123 bits (62), Expect = 1e-026
Identities = 107/122 (87%)
Strand = Plus / Minus
Query: 757 atcaaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgc 816
||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 219 atcaatcctttccatatgatcaatgccgaggtaacaatcataccgaggctgatgatctgc 160
Query: 817 atgagcacttggcggatctgcatggagcggatcgactccatcgtgtctccgacgaacccc 876
|||| || ||||||| |||||| || ||||||||||||| | ||| |||| |||||||
Sbjct: 159 gtgaggacctggcggacctgcatcgaccggatcgactccacctggtcgccgatgaacccc 100
Query: 877 at 878
||
Sbjct: 99 at 98
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 89,565
Number of Sequences: 312970
Number of extensions: 89565
Number of successful extensions: 21499
Number of sequences better than 0.5: 64
Number of HSP's better than 0.5 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21400
Number of HSP's gapped (non-prelim): 75
length of query: 1033
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1014
effective length of database: 169,188,109
effective search space: 171556742526
effective search space used: 171556742526
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)