BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521569.2.1
(887 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE421582.1|BE421582 HWM011cD.08r ITEC HWM Barley Leaf Li... 591 e-167
gb|BF626725.2|BF626725 HVSMEb0001C22f Hordeum vulgare seedl... 525 e-148
gb|BE231148.2|BE231148 HVSMEg0017A24f Hordeum vulgare pre-a... 264 4e-069
gb|BI957471.1|BI957471 HVSMEn0009M03f Hordeum vulgare rachi... 248 3e-064
gb|BM378002.2|BM378002 EBem04_SQ004_N18_R embryo, 12 DPA, n... 145 3e-033
gb|AJ462332.1|AJ462332 AJ462332 S00002 Hordeum vulgare subs... 137 7e-031
gb|BQ664839.1|BQ664839 HX01B05w HX Hordeum vulgare subsp. v... 127 7e-028
gb|BQ767072.1|BQ767072 EBro08_SQ007_K24_R root, 3 week, dro... 70 1e-010
gb|BM097866.2|BM097866 EBem04_SQ002_P04_R embryo, 12 DPA, n... 66 2e-009
gb|BF258030.2|BF258030 HVSMEf0014I19f Hordeum vulgare seedl... 64 8e-009
gb|BE438011.1|BE438011 SFR009.H06F990511 ITEC SFR Barley Le... 46 0.002
gb|BJ447934.1|BJ447934 BJ447934 K. Sato unpublished cDNA li... 46 0.002
gb|BJ455677.1|BJ455677 BJ455677 K. Sato unpublished cDNA li... 46 0.002
gb|BJ459891.1|BJ459891 BJ459891 K. Sato unpublished cDNA li... 46 0.002
gb|CB858305.1|CB858305 HI06I11w HI Hordeum vulgare subsp. v... 46 0.002
gb|AL499972.1|AL499972 AL499972 Hordeum vulgare Barke etiol... 40 0.12
>gb|BE421582.1|BE421582 HWM011cD.08r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM011cD.08, mRNA sequence
Length = 1501
Score = 591 bits (298), Expect = e-167
Identities = 544/623 (87%), Gaps = 3/623 (0%)
Strand = Plus / Minus
Query: 206 acacgaaggaccagttcacgaacatgaa-ggcaaggcagtgcggggtgtcgtcgtcgctc 264
|||||||||||||||| |||| |||||| ||| ||||||||||| | ||||||||||| |
Sbjct: 747 acacgaaggaccagttgacga-catgaaaggcgaggcagtgcggcgcgtcgtcgtcgcnc 689
Query: 265 aggaccttccacgccaccgcctgctcgtacgacaccggccgcccc-atgctcgacacaca 323
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 688 agcaccttccacgccaccgcctgctcgtacgacaccggccgcccctatgctcgacacgca 629
Query: 324 cacgccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggtgcagag 383
|||||| | |||||||||||||| ||||| ||||| || | ||| |||||| ||| ||
Sbjct: 628 cacgccgcntgggaggtacgcgaaaccctgctgcatgattntggggaactcggagcacag 569
Query: 384 cgccttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagcaatcag 443
|||||| | |||||| ||||| ||||||||||| || |||||||||||||| ||||||||
Sbjct: 568 cgccttgcggccatcatcgtcgaggatcttctccagcgagatgtcctggagcgcaatcag 509
Query: 444 cgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaacacgggagcagcctt 503
||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||
Sbjct: 508 cgtcgtctccagcatgtccaggccggcctggttggcgaaggtgaacacaggagctgcctt 449
Query: 504 cagggaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagcatccgt 563
|||||||||||||||||| || |||||||| |||||||||||||||| ||| || ||||
Sbjct: 448 cagggaacagcacatgattgaatccgagtgctgccacagcgctttcagggatgcgtccgc 389
Query: 564 gcattgggtgtccgtgcggaggagttcggctccagtgtggaacctgtagctcctgccgat 623
|| || | ||||||| |||||||| || || ||||| ||||||||||||||||||||
Sbjct: 388 gctctgtgactccgtgcaaaggagttccgccccggtgtgaaacctgtagctcctgccgat 329
Query: 624 ccaccttgccagcgtgtgtgcctcaggagatcctggagtttgcttcatttcaagctgtcc 683
|||||| || |||||||| |||||||| |||||||||| | ||||||||| | ||||||
Sbjct: 328 ccacctcgcaagcgtgtgagcctcaggggatcctggagggttcttcatttcgatctgtcc 269
Query: 684 accaatgcgcgaaggagctattgccatggctaccctctgcaccgatgccaccacggtcct 743
|||| || |||||||| ||||||||||| ||||||||||| ||||||||||| |||||
Sbjct: 268 accaggacgggaaggagcgattgccatggccaccctctgcactgatgccaccacagtcct 209
Query: 744 gacgtattgcctggccatggctgcgacgctctctcgtaggtgattttcatatgagaactg 803
|| || ||||| ||||| || ||||| |||||||| ||||| || ||||||||||||||
Sbjct: 208 cacatactgcctcgccattgccgcgacactctctcgaaggtggttctcatatgagaactg 149
Query: 804 gaaagcaatggtcagcactgatc 826
|||||||||||| ||||||||||
Sbjct: 148 gaaagcaatggtaagcactgatc 126
>gb|BF626725.2|BF626725 HVSMEb0001C22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0001C22f, mRNA sequence
Length = 834
Score = 525 bits (265), Expect = e-148
Identities = 427/481 (88%)
Strand = Plus / Plus
Query: 206 acacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgctca 265
|||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||| ||
Sbjct: 274 acacgaaggaccagttgacgaacatgaaggcgaggcagtgcggcgcgtcgtcgtcgccca 333
Query: 266 ggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacaca 325
| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 334 gcaccttccacgccaccgcctgctcgtacgacaccggccgcctcatgctcgacacgcaca 393
Query: 326 cgccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggtgcagagcg 385
|||| || |||||||||||||| ||||| ||||| || || ||| |||||| ||| ||||
Sbjct: 394 cgccgcctgggaggtacgcgaaaccctgctgcatgattttggggaactcggagcacagcg 453
Query: 386 ccttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagcaatcagcg 445
|||| | |||||||||||| ||||||||||| || |||||||||||||| ||||||||||
Sbjct: 454 ccttgcggccatcgtcgtcgaggatcttctccagcgagatgtcctggagcgcaatcagcg 513
Query: 446 tcgtctccagcatgtccaggccggcttggttggcaaaggtgaacacgggagcagccttca 505
||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||
Sbjct: 514 tcgtctccagcatgtccaggccggcctggttggcgaaggtgaacacaggagctgccttca 573
Query: 506 gggaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagcatccgtgc 565
|||||||||||||||| || |||||||| |||||||||||||||| |||||| |||| ||
Sbjct: 574 gggaacagcacatgattgaatccgagtgctgccacagcgctttcagggaagcgtccgcgc 633
Query: 566 attgggtgtccgtgcggaggagttcggctccagtgtggaacctgtagctcctgccgatcc 625
|| | ||||||| |||||||| || || ||||| ||||||||||||||||||||||
Sbjct: 634 tctgtgactccgtgcaaaggagttccgccccggtgtgaaacctgtagctcctgccgatcc 693
Query: 626 accttgccagcgtgtgtgcctcaggagatcctggagtttgcttcatttcaagctgtccac 685
|||| || |||||||| |||||| | |||||||||| | ||||||||||| ||||||||
Sbjct: 694 acctcgcaagcgtgtgagcctcaagggatcctggagggttcttcatttcaatctgtccac 753
Query: 686 c 686
|
Sbjct: 754 c 754
>gb|BE231148.2|BE231148 HVSMEg0017A24f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0017A24f, mRNA sequence
Length = 905
Score = 264 bits (133), Expect = 4e-069
Identities = 306/365 (83%)
Strand = Plus / Minus
Query: 499 gccttcagggaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagca 558
||||||||||| ||||||||||| || |||||||| |||| |||||||| || | ||||
Sbjct: 643 gccttcagggatcagcacatgattgaatccgagtgctgccccagcgcttacaggtaagcg 584
Query: 559 tccgtgcattgggtgtccgtgcggaggagttcggctccagtgtggaacctgtagctcctg 618
|||| || || | ||||||| || ||||| || || ||||| ||| |||||||||||
Sbjct: 583 tccgcgctctgtgactccgtgcaaagcagttccgccccggtgtgaaacatgtagctcctg 524
Query: 619 ccgatccaccttgccagcgtgtgtgcctcaggagatcctggagtttgcttcatttcaagc 678
||||||||||| || |||||||| |||||||| ||||||| || | ||||||||| | |
Sbjct: 523 ccgatccacctcgcaagcgtgtgagcctcaggggatcctgcagggttcttcatttcgatc 464
Query: 679 tgtccaccaatgcgcgaaggagctattgccatggctaccctctgcaccgatgccaccacg 738
||||||||| || ||||| || ||||||||||| ||||||||||| |||||||||||
Sbjct: 463 tgtccaccaggacgagaaggtgcaattgccatggccaccctctgcactgatgccaccaca 404
Query: 739 gtcctgacgtattgcctggccatggctgcgacgctctctcgtaggtgattttcatatgag 798
||||| || || ||||| ||||| || ||||| |||||||||||||| || |||||||||
Sbjct: 403 gtcctcacatactgcctcgccattgccgcgacactctctcgtaggtggttctcatatgag 344
Query: 799 aactggaaagcaatggtcagcactgatcttgtgttgcaggtgctnnanncgtcactcgaa 858
||||||||||||||||| ||||||||||||||||||| |||||| | ||||||| | |
Sbjct: 343 aactggaaagcaatggtaagcactgatcttgtgttgctggtgctggatgcgtcactggga 284
Query: 859 gcacg 863
|||||
Sbjct: 283 gcacg 279
>gb|BI957471.1|BI957471 HVSMEn0009M03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009M03f, mRNA sequence
Length = 718
Score = 248 bits (125), Expect = 3e-064
Identities = 191/212 (90%), Gaps = 1/212 (0%)
Strand = Plus / Minus
Query: 274 cacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacacgccaccg 333
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 212 cacgccaccgcntgctcgtacgacaccggccgccccatgctcgacacgcacacgccgcct 153
Query: 334 gggaggtacgcgaagccctgttgcataatcttagggtactcggtgcagagcgccttcctg 393
|||||||||||||| ||||| ||||| || || ||| |||||| ||| |||||||| | |
Sbjct: 152 gggaggtacgcgaaaccctgctgcatgattttggggaactcggagcacagcgccttgcgg 93
Query: 394 ccatcgtcgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtcgtctcc 453
||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 92 ccatcgtcgtcgaggatcttctccagcgagatgtcctggagcgcaatcagcgtcgtctcc 33
Query: 454 agcatgt-ccaggccggcttggttggcaaagg 484
||||||| |||||||||| |||||||| ||||
Sbjct: 32 agcatgtcccaggccggcctggttggcgaagg 1
>gb|BM378002.2|BM378002 EBem04_SQ004_N18_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ004_N18 5', mRNA sequence
Length = 540
Score = 145 bits (73), Expect = 3e-033
Identities = 202/245 (82%)
Strand = Plus / Minus
Query: 271 ttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacacgcca 330
|||||||||||||||||||| |||||| || ||||||||||||||||| ||||||||
Sbjct: 349 ttccacgccaccgcctgctcatacgacgcctgccgccccatgctcgacttgcacacgccc 290
Query: 331 ccggggaggtacgcgaagccctgttgcataatcttagggtactcggtgcagagcgccttc 390
||||||||||||||||| ||||| ||||| | ||| | | |||||| ||| ||||||||
Sbjct: 289 ccggggaggtacgcgaaaccctgctgcatgaccttggagaactcggcgcacagcgccttg 230
Query: 391 ctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtcgtc 450
| || |||||||| |||||| ||| || ||||||||||| || | ||||||||||
Sbjct: 229 cgcccctcgtcgtccaggatcgcctccagcgagatgtcctgcaggttcaccagcgtcgtc 170
Query: 451 tccagcatgtccaggccggcttggttggcaaaggtgaacacgggagcagccttcagggaa 510
||||||||||| ||| | || | |||| | |||||||||| ||||||| |||||| ||
Sbjct: 169 tccagcatgtcaagggccgcgttgttgccgaaggtgaacatcggagcaggcttcagagag 110
Query: 511 cagca 515
|||||
Sbjct: 109 cagca 105
Score = 65.9 bits (33), Expect = 2e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcgg 248
||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct: 422 tcacaggaaggtccagttgacgaacatgaaggcaaggcagtgcgg 378
>gb|AJ462332.1|AJ462332 AJ462332 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200065F09F1, mRNA sequence
Length = 360
Score = 137 bits (69), Expect = 7e-031
Identities = 162/193 (83%)
Strand = Plus / Minus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacacg 327
||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||
Sbjct: 193 accttccacgccaccgcctgctcatacgacgcctgccgccccatgctcgacttgcacacg 134
Query: 328 ccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggtgcagagcgcc 387
|| ||||||||||||||||| ||||| ||||| | ||| | | |||||| ||| ||||||
Sbjct: 133 cccccggggaggtacgcgaaaccctgctgcatgaccttggagaactcggcgcacagcgcc 74
Query: 388 ttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtc 447
|| | || |||||||| |||||| ||| || ||||||||||| || | |||||||
Sbjct: 73 ttgcgcccctcgtcgtccaggatcgcctccagcgagatgtcctgcaggttcaccagcgtc 14
Query: 448 gtctccagcatgt 460
|||||||||||||
Sbjct: 13 gtctccagcatgt 1
Score = 65.9 bits (33), Expect = 2e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcgg 248
||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct: 263 tcacaggaaggtccagttgacgaacatgaaggcaaggcagtgcgg 219
>gb|BQ664839.1|BQ664839 HX01B05w HX Hordeum vulgare subsp. vulgare cDNA clone HX01B05
3-PRIME, mRNA sequence
Length = 489
Score = 127 bits (64), Expect = 7e-028
Identities = 139/164 (84%)
Strand = Plus / Plus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacacg 327
||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||
Sbjct: 308 accttccacgccaccgcctgctcatacgacgcctgccgccccatgctcgacttgcacacg 367
Query: 328 ccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggtgcagagcgcc 387
|| ||||||||||||||||| ||||| ||||| | ||| | | |||||| ||| ||||||
Sbjct: 368 cccccggggaggtacgcgaaaccctgctgcatgaccttggagaactcggcgcacagcgcc 427
Query: 388 ttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctg 431
|| | || |||||||| |||||| ||| || |||||||||||
Sbjct: 428 ttgcgcccctcgtcgtccaggatcgcctccagcgagatgtcctg 471
Score = 65.9 bits (33), Expect = 2e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcgg 248
||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct: 238 tcacaggaaggtccagttgacgaacatgaaggcaaggcagtgcgg 282
>gb|BQ767072.1|BQ767072 EBro08_SQ007_K24_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_K24 5', mRNA sequence
Length = 397
Score = 69.9 bits (35), Expect = 1e-010
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
||||||||||||||||||| | |||||||| ||||||| ||||||||||||
Sbjct: 159 accttccacgccaccgccttcccgtacgacgccggccggcccatgctcgac 109
>gb|BM097866.2|BM097866 EBem04_SQ002_P04_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ002_P04 5', mRNA sequence
Length = 349
Score = 65.9 bits (33), Expect = 2e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcgg 248
||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct: 109 tcacaggaaggtccagttgacgaacatgaaggcaaggcagtgcgg 65
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 271 ttccacgccaccgcctgctcgtacgacaccggccgc 306
|||||||||||||| ||||| |||||| || |||||
Sbjct: 36 ttccacgccaccgcttgctcatacgacgcctgccgc 1
>gb|BF258030.2|BF258030 HVSMEf0014I19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0014I19f, mRNA sequence
Length = 563
Score = 63.9 bits (32), Expect = 8e-009
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 803 ggaaagcaatggtcagcactgatcttgtgttgcaggtgct 842
||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 562 ggaaagcaatggtaagcactgatcttgtgttgctggtgct 523
>gb|BE438011.1|BE438011 SFR009.H06F990511 ITEC SFR Barley Leaf Epidermis Library Hordeum
vulgare subsp. vulgare cDNA clone SF, mRNA sequence
Length = 523
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 242 tcacacgaaagaccagttgacgaagcagaaggcaaggcagtgc 200
>gb|BJ447934.1|BJ447934 BJ447934 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17m20 5', mRNA sequence
Length = 447
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 219 tcacacgaaagaccagttgacgaagcagaaggcaaggcagtgc 177
>gb|BJ455677.1|BJ455677 BJ455677 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17m20 3', mRNA sequence
Length = 420
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 203 tcacacgaaagaccagttgacgaagcagaaggcaaggcagtgc 245
>gb|BJ459891.1|BJ459891 BJ459891 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak38k12 3', mRNA sequence
Length = 659
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 206 tcacacgaaagaccagttgacgaagcagaaggcaaggcagtgc 248
>gb|CB858305.1|CB858305 HI06I11w HI Hordeum vulgare subsp. vulgare cDNA clone HI06I11
3-PRIME, mRNA sequence
Length = 638
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 198 tcacacgaaagaccagttgacgaagcagaaggcaaggcagtgc 240
>gb|AL499972.1|AL499972 AL499972 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04F09r 3', mRNA sequence
Length = 573
Score = 40.1 bits (20), Expect = 0.12
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
||||||||| |||||||| ||||| |||||||||||| |||
Sbjct: 254 tcacacgaaagaccagttgacgaagcagaaggcaaggcantgc 296
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 81,225
Number of Sequences: 312970
Number of extensions: 81225
Number of successful extensions: 21006
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20972
Number of HSP's gapped (non-prelim): 27
length of query: 887
length of database: 175,134,539
effective HSP length: 19
effective length of query: 868
effective length of database: 169,188,109
effective search space: 146855278612
effective search space used: 146855278612
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)