BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521462.2.2
(1311 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA014815.1|CA014815 HT12G23r HT Hordeum vulgare subsp. v... 541 e-152
gb|BU990124.1|BU990124 HF24C15r HF Hordeum vulgare subsp. v... 531 e-149
gb|BQ465233.1|BQ465233 HU03A07r HU Hordeum vulgare subsp. v... 505 e-141
gb|BM444264.1|BM444264 EBem09_SQ004_K07_R embryo, 1 Day ger... 464 e-129
gb|BU972271.1|BU972271 HB21C19r BC Hordeum vulgare subsp. v... 440 e-122
gb|BF265822.1|BF265822 HV_CEa0013G21f Hordeum vulgare seedl... 184 5e-045
gb|AV917174.1|AV917174 AV917174 K. Sato unpublished cDNA li... 184 5e-045
gb|BQ466667.1|BQ466667 HS01D11T HS Hordeum vulgare subsp. v... 184 5e-045
gb|BQ466990.1|BQ466990 HS02D11r HS Hordeum vulgare subsp. v... 184 5e-045
gb|BQ662231.1|BQ662231 HS01D11w HS Hordeum vulgare subsp. v... 184 5e-045
gb|CA002012.1|CA002012 HS06E04r HS Hordeum vulgare subsp. v... 184 5e-045
gb|CA009861.1|CA009861 HT12G23u HT Hordeum vulgare subsp. v... 184 5e-045
gb|BQ465196.1|BQ465196 HU02O17r HU Hordeum vulgare subsp. v... 174 5e-042
gb|BQ467754.1|BQ467754 HS04M10r HS Hordeum vulgare subsp. v... 174 5e-042
gb|BQ470277.1|BQ470277 HX02G12r HX Hordeum vulgare subsp. v... 174 5e-042
gb|BU989668.1|BU989668 HF22F24r HF Hordeum vulgare subsp. v... 174 5e-042
gb|BU990653.1|BU990653 HF25K21r HF Hordeum vulgare subsp. v... 174 5e-042
gb|BU998184.1|BU998184 HI10E02r HI Hordeum vulgare subsp. v... 174 5e-042
gb|CA007157.1|CA007157 HU06P10r HU Hordeum vulgare subsp. v... 174 5e-042
gb|CA032718.1|CA032718 HX14A06r HX Hordeum vulgare subsp. v... 174 5e-042
gb|BG415776.2|BG415776 HVSMEk0007M10f Hordeum vulgare testa... 172 2e-041
gb|CA021658.1|CA021658 HZ40K23r HZ Hordeum vulgare subsp. v... 161 7e-038
gb|CA004802.1|CA004802 HS18L18r HS Hordeum vulgare subsp. v... 155 4e-036
gb|AW982908.2|AW982908 HVSMEg0004I13f Hordeum vulgare pre-a... 139 3e-031
gb|BF617114.2|BF617114 HVSMEc0014K08f Hordeum vulgare seedl... 121 6e-026
gb|BF629961.2|BF629961 HVSMEb0007H14f Hordeum vulgare seedl... 100 2e-019
gb|AV923038.1|AV923038 AV923038 K. Sato unpublished cDNA li... 80 2e-013
gb|AV931983.1|AV931983 AV931983 K. Sato unpublished cDNA li... 80 2e-013
gb|BE194657.3|BE194657 HVSMEh0086G10f Hordeum vulgare 5-45 ... 58 8e-007
gb|BM816745.1|BM816745 HB02D10_T3.ab1 HB Hordeum vulgare su... 58 8e-007
gb|BF265820.1|BF265820 HV_CEa0013G19f Hordeum vulgare seedl... 54 1e-005
gb|CV062418.1|CV062418 BNEL79g9 Barley EST endosperm librar... 52 5e-005
gb|BF624483.3|BF624483 HVSMEa0016L04f Hordeum vulgare seedl... 50 2e-004
gb|BG414493.2|BG414493 HVSMEk0002K22f Hordeum vulgare testa... 48 7e-004
gb|BI950575.1|BI950575 HVSMEl0021H10f Hordeum vulgare spike... 46 0.003
gb|BM101420.1|BM101420 EBpi01_SQ003_M19_R pistil, 1 DPA, no... 46 0.003
gb|BQ658439.1|BQ658439 HB09C11w BC Hordeum vulgare subsp. v... 46 0.003
gb|BQ662841.1|BQ662841 HS04G18u HS Hordeum vulgare subsp. v... 46 0.003
gb|BQ662921.1|BQ662921 HS04M10u HS Hordeum vulgare subsp. v... 46 0.003
gb|BQ663500.1|BQ663500 HU02O17u HU Hordeum vulgare subsp. v... 46 0.003
gb|CB859369.1|CB859369 HI10E02w HI Hordeum vulgare subsp. v... 46 0.003
gb|AV927744.1|AV927744 AV927744 K. Sato unpublished cDNA li... 42 0.046
gb|CV054303.1|CV054303 BNEL109a5 Barley EST endosperm libra... 42 0.046
gb|BG300415.1|BG300415 HVSMEb0016P04f Hordeum vulgare seedl... 40 0.18
gb|BM377223.2|BM377223 EBem05_SQ004_H19_R embryo, 14 DPA, n... 40 0.18
>gb|CA014815.1|CA014815 HT12G23r HT Hordeum vulgare subsp. vulgare cDNA clone HT12G23
5-PRIME, mRNA sequence
Length = 649
Score = 541 bits (273), Expect = e-152
Identities = 522/605 (86%)
Strand = Plus / Plus
Query: 245 ggaagcggatcggcgagcctatggacagatcgtctccatctacgtcgtgggggttctccg 304
|||||||||| |||||| | |||||||| || || || || ||||| |||||||||||||
Sbjct: 45 ggaagcggataggcgaggcgatggacaggtcctccccgtcgacgtcctgggggttctccg 104
Query: 305 gagggcgcgagaaggagcggatcggcgtgggcaagcagccggagatgcctcgctccggcg 364
|||| ||||||| ||| ||||||| || || |||||||||||| |||| ||||||||||
Sbjct: 105 gaggacgcgagagggaccggatcgccgccgggaagcagccggaggtgccccgctccggcg 164
Query: 365 gcggatccaccgccatgtccaagagcaagctctctgacgcagaatcagaaactgacagcg 424
||||||||||||||||||||||| ||||||| || || | |||||| || |||||||| |
Sbjct: 165 gcggatccaccgccatgtccaagggcaagctgtccgatggagaatcggacactgacagtg 224
Query: 425 aagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgta 484
|||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 225 aagaatcagacctgagtggttctgatggagaagatacatcgtggatttcatggttctgta 284
Query: 485 gcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttca 544
|||| ||||||||| || |||||||| |||||||| || ||||||||||| |||||||
Sbjct: 285 gcttgcggggcaatgagttcttctgtgaagttgatgacgattacatacaagacgatttca 344
Query: 545 acctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgatattag 604
| ||||||||||||||| ||||||||||||||||| ||||| ||||| || ||||| |
Sbjct: 345 atctctgtgggctaagcggtcaagttccatattatgaatatgctcttgaccttatattgg 404
Query: 605 atgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaacttattgaatcag 664
|||| || ||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 405 atgtcgagtcttcacatggtgatatgttcacagaagagcagaatgaacttattgaatcag 464
Query: 665 ctgctgagatgctctatggattgattcatgttcggtatattattacaagtaaagggctgt 724
|||| |||||||| |||||||||||||||||||| |||||| | |||||||||||| ||
Sbjct: 465 ctgcagagatgctttatggattgattcatgttcgatatattctaacaagtaaagggttgg 524
Query: 725 ccgcaatgctggataagtacaggaacgttgagttcggcagatgccctcgagtgaattgca 784
| |||||| ||||||| |||| |||| ||| || |||||||| || ||||| | || |
Sbjct: 525 ctgcaatgttggataaatacaagaactatgactttggcagatgtccaagagtgcactgta 584
Query: 785 gcggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaaga 844
||||||||||||||||||| ||||| || ||||| |||||||||| |||| ||||| |
Sbjct: 585 gcggccaaccatgccttccagttggccagtcggacattcctcgttctagtaatgtgaaaa 644
Query: 845 tttac 849
|||||
Sbjct: 645 tttac 649
>gb|BU990124.1|BU990124 HF24C15r HF Hordeum vulgare subsp. vulgare cDNA clone HF24C15
5-PRIME, mRNA sequence
Length = 700
Score = 531 bits (268), Expect = e-149
Identities = 544/636 (85%)
Strand = Plus / Plus
Query: 405 agaatcagaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttc 464
|||||| || |||||||| ||||||||||| |||||||||||||||| |||||||| ||
Sbjct: 18 agaatcggacactgacagtgaagaatcagacctgagtggttctgatggagaagatacatc 77
Query: 465 gtggatttcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatga 524
|||||||||||||||||||||||| ||||||||| || |||||||| |||||||| ||
Sbjct: 78 gtggatttcatggttctgtagcttgcggggcaatgagttcttctgtgaagttgatgacga 137
Query: 525 ctacatacaagatgatttcaacctctgtgggctaagcaaccaagttccatattatgacta 584
||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||
Sbjct: 138 ttacatacaagacgatttcaatctctgtgggctaagcggtcaagttccatattatgaata 197
Query: 585 tgcacttgatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagca 644
||| ||||| || ||||| ||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 198 tgctcttgaccttatattggatgtcgagtcttcacatggtgatatgttcacagaagagca 257
Query: 645 aaatgaacttattgaatcagctgctgagatgctctatggattgattcatgttcggtatat 704
||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 258 gaatgaacttattgaatcagctgcagagatgctttatggattgattcatgttcgatatat 317
Query: 705 tattacaagtaaagggctgtccgcaatgctggataagtacaggaacgttgagttcggcag 764
| | |||||||||||| || | |||||| ||||||| |||| |||| ||| || |||||
Sbjct: 318 tctaacaagtaaagggttggctgcaatgttggataaatacaagaactatgactttggcag 377
Query: 765 atgccctcgagtgaattgcagcggccaaccatgccttcctgttgggcaatcggatgttcc 824
||| || ||||| | || |||||||||||||||||||| ||||| || ||||| ||||
Sbjct: 378 atgtccaagagtgcactgtagcggccaaccatgccttccagttggccagtcggacattcc 437
Query: 825 tcgttcaagtacggtgaagatttactgccctagatgtgaagacatctacactccaagatc 884
|||||| |||| ||||| ||||||||||| | |||||||| ||||| ||| |||||
Sbjct: 438 tcgttctagtaatgtgaaaatttactgcccaaagtgtgaagatctctactatccgagatc 497
Query: 885 caaatatctaagcaacatcgacgggacttactttgggacaacattcccccacttgttcct 944
|||||||| ||||||||| |||||| | |||||||||||||| || || |||||||| ||
Sbjct: 498 caaatatcaaagcaacattgacggggcgtactttgggacaacgtttcctcacttgtttct 557
Query: 945 gatgacatacccgcatttgaagccccagaagccgctgcagcaatacgttcccagggtatt 1004
|||||| ||||| ||||||||||||||||| ||| ||||| ||||| |||| ||| ||
Sbjct: 558 gatgacctacccacatttgaagccccagaaaccgtcacagcagtacgtacccaaggtttt 617
Query: 1005 tgggttcaaaatccgtaagccatgacaaatttgaag 1040
||| |||||| | | |||||||| |||| |||||||
Sbjct: 618 tggcttcaaacttcataagccataacaagtttgaag 653
>gb|BQ465233.1|BQ465233 HU03A07r HU Hordeum vulgare subsp. vulgare cDNA clone HU03A07
5-PRIME, mRNA sequence
Length = 552
Score = 505 bits (255), Expect = e-141
Identities = 468/539 (86%)
Strand = Plus / Plus
Query: 265 atggacagatcgtctccatctacgtcgtgggggttctccggagggcgcgagaaggagcgg 324
|||||||| || || || || ||||| ||||||||||||||||| ||||||| ||| |||
Sbjct: 11 atggacaggtcctccccgtcgacgtcctgggggttctccggaggacgcgagagggaccgg 70
Query: 325 atcggcgtgggcaagcagccggagatgcctcgctccggcggcggatccaccgccatgtcc 384
|||| || || |||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 71 atcgccgccgggaagcagccggaggtgccccgctccggcggcggatccaccgccatgtcc 130
Query: 385 aagagcaagctctctgacgcagaatcagaaactgacagcgaagaatcagatgtgagtggt 444
||| ||||||| || || | |||||| || |||||||| ||||||||||| ||||||||
Sbjct: 131 aagggcaagctgtccgatggagaatcggacactgacagtgaagaatcagacctgagtggt 190
Query: 445 tctgatggggaagatacttcgtggatttcatggttctgtagcttaaagggcaatgaattt 504
|||||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||
Sbjct: 191 tctgatggagaagatacatcgtggatttcatggttctgtagcttgcggggcaatgagttc 250
Query: 505 ttctgtgaggttgatgatgactacatacaagatgatttcaacctctgtgggctaagcaac 564
|||||||| |||||||| || ||||||||||| |||||||| |||||||||||||||
Sbjct: 251 ttctgtgaagttgatgacgattacatacaagacgatttcaatctctgtgggctaagcggt 310
Query: 565 caagttccatattatgactatgcacttgatctgatattagatgttgaatcttcccatggt 624
||||||||||||||||| ||||| ||||| || ||||| ||||| || ||||| ||||||
Sbjct: 311 caagttccatattatgaatatgctcttgaccttatattggatgtcgagtcttcacatggt 370
Query: 625 gatatgttgacagaagagcaaaatgaacttattgaatcagctgctgagatgctctatgga 684
|||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 371 gatatgttcacagaagagcagaatgaacttattgaatcagctgcagagatgctttatgga 430
Query: 685 ttgattcatgttcggtatattattacaagtaaagggctgtccgcaatgctggataagtac 744
|||||||||||||| |||||| | |||||||||||| || | |||||| ||||||| |||
Sbjct: 431 ttgattcatgttcgatatattctaacaagtaaagggttggctgcaatgttggataaatac 490
Query: 745 aggaacgttgagttcggcagatgccctcgagtgaattgcagcggccaaccatgccttcc 803
| |||| ||| || |||||||| || ||||| | || ||||||||||||||||||||
Sbjct: 491 aagaactatgactttggcagatgtccaagagtgcactgtagcggccaaccatgccttcc 549
>gb|BM444264.1|BM444264 EBem09_SQ004_K07_R embryo, 1 Day germination, no treatment, cv Optic,
EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_K07 5', mRNA sequence
Length = 574
Score = 464 bits (234), Expect = e-129
Identities = 489/574 (85%)
Strand = Plus / Plus
Query: 465 gtggatttcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatga 524
|||||||||||||||||||||||| ||||||||| || |||||||| |||||||| ||
Sbjct: 1 gtggatttcatggttctgtagcttgcggggcaatgagttcttctgtgaagttgatgacga 60
Query: 525 ctacatacaagatgatttcaacctctgtgggctaagcaaccaagttccatattatgacta 584
||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||
Sbjct: 61 ttacatacaagacgatttcaatctctgtgggctaagcggtcaagttccatattatgaata 120
Query: 585 tgcacttgatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagca 644
||| ||||| || ||||| ||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 121 tgctcttgaccttatattggatgtcgagtcttcacatggtgatatgttcacagaagagca 180
Query: 645 aaatgaacttattgaatcagctgctgagatgctctatggattgattcatgttcggtatat 704
||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 181 gaatgaacttattgaatcagctgcagagatgctttatggattgattcatgttcgatatat 240
Query: 705 tattacaagtaaagggctgtccgcaatgctggataagtacaggaacgttgagttcggcag 764
| | |||||||||||| || | |||||| ||||||| |||| |||| ||| || |||||
Sbjct: 241 tctaacaagtaaagggttggctgcaatgttggataaatacaagaactatgactttggcag 300
Query: 765 atgccctcgagtgaattgcagcggccaaccatgccttcctgttgggcaatcggatgttcc 824
||| || ||||| | || |||||||||||||||||||| ||||| || ||||| ||||
Sbjct: 301 atgtccaagagtgcactgtagcggccaaccatgccttccagttggccagtcggacattcc 360
Query: 825 tcgttcaagtacggtgaagatttactgccctagatgtgaagacatctacactccaagatc 884
|||||| |||| ||||| ||||||||||| | |||||||| ||||| ||| |||||
Sbjct: 361 tcgttctagtaatgtgaaaatttactgcccaaagtgtgaagatctctactatccgagatc 420
Query: 885 caaatatctaagcaacatcgacgggacttactttgggacaacattcccccacttgttcct 944
|||||||| ||||||||| |||||| | |||||||||||||| || || |||||||| ||
Sbjct: 421 caaatatcaaagcaacattgacggggcgtactttgggacaacgtttcctcacttgtttct 480
Query: 945 gatgacatacccgcatttgaagccccagaagccgctgcagcaatacgttcccagggtatt 1004
|||||| ||||| ||||||||||||||||| ||| ||||| ||||| |||| ||| ||
Sbjct: 481 gatgacctacccacatttgaagccccagaaaccgtcacagcagtacgtacccaaggtttt 540
Query: 1005 tgggttcaaaatccgtaagccatgacaaatttga 1038
||| |||||| | | |||||||| |||| |||||
Sbjct: 541 tggcttcaaacttcataagccataacaagtttga 574
>gb|BU972271.1|BU972271 HB21C19r BC Hordeum vulgare subsp. vulgare cDNA clone HB21C19
5-PRIME, mRNA sequence
Length = 526
Score = 440 bits (222), Expect = e-122
Identities = 429/498 (86%)
Strand = Plus / Plus
Query: 405 agaatcagaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttc 464
|||||| || |||||||| ||||||||||| |||||||||||||||| |||||||| ||
Sbjct: 27 agaatcggacactgacagtgaagaatcagacctgagtggttctgatggagaagatacatc 86
Query: 465 gtggatttcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatga 524
|||||||||||||||||||||||| ||||||||| || |||||||| |||||||| ||
Sbjct: 87 gtggatttcatggttctgtagcttgcggggcaatgagttcttctgtgaagttgatgacga 146
Query: 525 ctacatacaagatgatttcaacctctgtgggctaagcaaccaagttccatattatgacta 584
||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||
Sbjct: 147 ttacatacaagacgatttcaatctctgtgggctaagcggtcaagttccatattatgaata 206
Query: 585 tgcacttgatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagca 644
||| ||||| || ||||| ||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 207 tgctcttgaccttatattggatgtcgagtcttcacatggtgatatgttcacagaagagca 266
Query: 645 aaatgaacttattgaatcagctgctgagatgctctatggattgattcatgttcggtatat 704
||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 267 gaatgaacttattgaatcagctgcagagatgctttatggattgattcatgttcgatatat 326
Query: 705 tattacaagtaaagggctgtccgcaatgctggataagtacaggaacgttgagttcggcag 764
| | |||||||||||| || | |||||| ||||||| |||| |||| ||| || |||||
Sbjct: 327 tctaacaagtaaagggttggctgcaatgttggataaatacaagaactatgactttggcag 386
Query: 765 atgccctcgagtgaattgcagcggccaaccatgccttcctgttgggcaatcggatgttcc 824
||| || ||||| | || |||||||||||||||||||| ||||| || ||||| ||||
Sbjct: 387 atgtccaagagtgcactgtagcggccaaccatgccttccagttggccagtcggacattcc 446
Query: 825 tcgttcaagtacggtgaagatttactgccctagatgtgaagacatctacactccaagatc 884
|||||| |||| ||||| ||||||||||| | |||||||| ||||| ||| |||||
Sbjct: 447 tcgttctagtaatgtgaaaatttactgcccaaagtgtgaagatctctactatccgagatc 506
Query: 885 caaatatctaagcaacat 902
|||||||| |||||||||
Sbjct: 507 caaatatcaaagcaacat 524
>gb|BF265822.1|BF265822 HV_CEa0013G21f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013G21f, mRNA sequence
Length = 768
Score = 184 bits (93), Expect = 5e-045
Identities = 231/277 (83%)
Strand = Plus / Plus
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||| |||| ||||||||| |||| |||||||| |||||||| || ||||||||||||
Sbjct: 252 gacagtgaagcatcagatgttggtggctctgatggagaagatacctcatggatttcatgg 311
Query: 478 ttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagat 537
| || | | ||| || ||||| || |||||||| || |||||||| ||||| ||||||
Sbjct: 312 tattgcaacctaagagggaatgagttcttctgtgaagtcgatgatgattacattcaagat 371
Query: 538 gatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctg 597
|| ||||| || |||||||| |||| ||||||||||||||||| ||||| ||||||||
Sbjct: 372 gacttcaatctttgtgggcttagcagtcaagttccatattatgattatgctcttgatctc 431
Query: 598 atattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaacttatt 657
|| |||||| | || ||||||||||||||||| || |||||||| |||||||| || |
Sbjct: 432 attttagatatcgagtcttcccatggtgatattttcacagaagaacaaaatgagctagtg 491
Query: 658 gaatcagctgctgagatgctctatggattgattcatg 694
|||||||||||||||||| | ||||| |||||||||
Sbjct: 492 gaatcagctgctgagatgttgtatgggctgattcatg 528
>gb|AV917174.1|AV917174 AV917174 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8d05 5', mRNA sequence
Length = 623
Score = 184 bits (93), Expect = 5e-045
Identities = 231/277 (83%)
Strand = Plus / Plus
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||| |||| ||||||||| |||| |||||||| |||||||| || ||||||||||||
Sbjct: 178 gacagtgaagcatcagatgttggtggctctgatggagaagatacctcatggatttcatgg 237
Query: 478 ttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagat 537
| || | | ||| || ||||| || |||||||| || |||||||| ||||| ||||||
Sbjct: 238 tattgcaacctaagagggaatgagttcttctgtgaagtcgatgatgattacattcaagat 297
Query: 538 gatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctg 597
|| ||||| || |||||||| |||| ||||||||||||||||| ||||| ||||||||
Sbjct: 298 gacttcaatctttgtgggcttagcagtcaagttccatattatgattatgctcttgatctc 357
Query: 598 atattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaacttatt 657
|| |||||| | || ||||||||||||||||| || |||||||| |||||||| || |
Sbjct: 358 attttagatatcgagtcttcccatggtgatattttcacagaagaacaaaatgagctagtg 417
Query: 658 gaatcagctgctgagatgctctatggattgattcatg 694
|||||||||||||||||| | ||||| |||||||||
Sbjct: 418 gaatcagctgctgagatgttgtatgggctgattcatg 454
>gb|BQ466667.1|BQ466667 HS01D11T HS Hordeum vulgare subsp. vulgare cDNA clone HS01D11
5-PRIME, mRNA sequence
Length = 574
Score = 184 bits (93), Expect = 5e-045
Identities = 216/257 (84%)
Strand = Plus / Plus
Query: 784 agcggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaag 843
|||||||||||||||||||| ||||| || ||||| |||||||||| |||| |||||
Sbjct: 25 agcggccaaccatgccttccagttggccagtcggacattcctcgttctagtaatgtgaaa 84
Query: 844 atttactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatc 903
||||||||||| | |||||||| ||||| ||| ||||||||||||| |||||||||
Sbjct: 85 atttactgcccaaagtgtgaagatctctactatccgagatccaaatatcaaagcaacatt 144
Query: 904 gacgggacttactttgggacaacattcccccacttgttcctgatgacatacccgcatttg 963
|||||| | |||||||||||||| || || |||||||| |||||||| ||||| ||||||
Sbjct: 145 gacggggcgtactttgggacaacgtttcctcacttgtttctgatgacctacccacatttg 204
Query: 964 aagccccagaagccgctgcagcaatacgttcccagggtatttgggttcaaaatccgtaag 1023
||||||||||| ||| ||||| ||||| |||| ||| ||||| |||||| | | ||||
Sbjct: 205 aagccccagaaaccgtcacagcagtacgtacccaaggtttttggcttcaaacttcataag 264
Query: 1024 ccatgacaaatttgaag 1040
|||| |||| |||||||
Sbjct: 265 ccataacaagtttgaag 281
>gb|BQ466990.1|BQ466990 HS02D11r HS Hordeum vulgare subsp. vulgare cDNA clone HS02D11
5-PRIME, mRNA sequence
Length = 538
Score = 184 bits (93), Expect = 5e-045
Identities = 216/257 (84%)
Strand = Plus / Plus
Query: 784 agcggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaag 843
|||||||||||||||||||| ||||| || ||||| |||||||||| |||| |||||
Sbjct: 25 agcggccaaccatgccttccagttggccagtcggacattcctcgttctagtaatgtgaaa 84
Query: 844 atttactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatc 903
||||||||||| | |||||||| ||||| ||| ||||||||||||| |||||||||
Sbjct: 85 atttactgcccaaagtgtgaagatctctactatccgagatccaaatatcaaagcaacatt 144
Query: 904 gacgggacttactttgggacaacattcccccacttgttcctgatgacatacccgcatttg 963
|||||| | |||||||||||||| || || |||||||| |||||||| ||||| ||||||
Sbjct: 145 gacggggcgtactttgggacaacgtttcctcacttgtttctgatgacctacccacatttg 204
Query: 964 aagccccagaagccgctgcagcaatacgttcccagggtatttgggttcaaaatccgtaag 1023
||||||||||| ||| ||||| ||||| |||| ||| ||||| |||||| | | ||||
Sbjct: 205 aagccccagaaaccgtcacagcagtacgtacccaaggtttttggcttcaaacttcataag 264
Query: 1024 ccatgacaaatttgaag 1040
|||| |||| |||||||
Sbjct: 265 ccataacaagtttgaag 281
>gb|BQ662231.1|BQ662231 HS01D11w HS Hordeum vulgare subsp. vulgare cDNA clone HS01D11
3-PRIME, mRNA sequence
Length = 650
Score = 184 bits (93), Expect = 5e-045
Identities = 216/257 (84%)
Strand = Plus / Minus
Query: 784 agcggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaag 843
|||||||||||||||||||| ||||| || ||||| |||||||||| |||| |||||
Sbjct: 637 agcggccaaccatgccttccagttggccagtcggacattcctcgttctagtaatgtgaaa 578
Query: 844 atttactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatc 903
||||||||||| | |||||||| ||||| ||| ||||||||||||| |||||||||
Sbjct: 577 atttactgcccaaagtgtgaagatctctactatccgagatccaaatatcaaagcaacatt 518
Query: 904 gacgggacttactttgggacaacattcccccacttgttcctgatgacatacccgcatttg 963
|||||| | |||||||||||||| || || |||||||| |||||||| ||||| ||||||
Sbjct: 517 gacggggcgtactttgggacaacgtttcctcacttgtttctgatgacctacccacatttg 458
Query: 964 aagccccagaagccgctgcagcaatacgttcccagggtatttgggttcaaaatccgtaag 1023
||||||||||| ||| ||||| ||||| |||| ||| ||||| |||||| | | ||||
Sbjct: 457 aagccccagaaaccgtcacagcagtacgtacccaaggtttttggcttcaaacttcataag 398
Query: 1024 ccatgacaaatttgaag 1040
|||| |||| |||||||
Sbjct: 397 ccataacaagtttgaag 381
>gb|CA002012.1|CA002012 HS06E04r HS Hordeum vulgare subsp. vulgare cDNA clone HS06E04
5-PRIME, mRNA sequence
Length = 628
Score = 184 bits (93), Expect = 5e-045
Identities = 231/277 (83%)
Strand = Plus / Plus
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||| |||| ||||||||| |||| |||||||| |||||||| || ||||||||||||
Sbjct: 338 gacagtgaagcatcagatgttggtggctctgatggagaagatacctcatggatttcatgg 397
Query: 478 ttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagat 537
| || | | ||| || ||||| || |||||||| || |||||||| ||||| ||||||
Sbjct: 398 tattgcaacctaagagggaatgagttcttctgtgaagtcgatgatgattacattcaagat 457
Query: 538 gatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctg 597
|| ||||| || |||||||| |||| ||||||||||||||||| ||||| ||||||||
Sbjct: 458 gacttcaatctttgtgggcttagcagtcaagttccatattatgattatgctcttgatctc 517
Query: 598 atattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaacttatt 657
|| |||||| | || ||||||||||||||||| || |||||||| |||||||| || |
Sbjct: 518 attttagatatcgagtcttcccatggtgatattttcacagaagaacaaaatgagctagtg 577
Query: 658 gaatcagctgctgagatgctctatggattgattcatg 694
|||||||||||||||||| | ||||| |||||||||
Sbjct: 578 gaatcagctgctgagatgttgtatgggctgattcatg 614
>gb|CA009861.1|CA009861 HT12G23u HT Hordeum vulgare subsp. vulgare cDNA clone HT12G23
3-PRIME, mRNA sequence
Length = 543
Score = 184 bits (93), Expect = 5e-045
Identities = 216/257 (84%)
Strand = Plus / Minus
Query: 784 agcggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaag 843
|||||||||||||||||||| ||||| || ||||| |||||||||| |||| |||||
Sbjct: 519 agcggccaaccatgccttccagttggccagtcggacattcctcgttctagtaatgtgaaa 460
Query: 844 atttactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatc 903
||||||||||| | |||||||| ||||| ||| ||||||||||||| |||||||||
Sbjct: 459 atttactgcccaaagtgtgaagatctctactatccgagatccaaatatcaaagcaacatt 400
Query: 904 gacgggacttactttgggacaacattcccccacttgttcctgatgacatacccgcatttg 963
|||||| | |||||||||||||| || || |||||||| |||||||| ||||| ||||||
Sbjct: 399 gacggggcgtactttgggacaacgtttcctcacttgtttctgatgacctacccacatttg 340
Query: 964 aagccccagaagccgctgcagcaatacgttcccagggtatttgggttcaaaatccgtaag 1023
||||||||||| ||| ||||| ||||| |||| ||| ||||| |||||| | | ||||
Sbjct: 339 aagccccagaaaccgtcacagcagtacgtacccaaggtttttggcttcaaacttcataag 280
Query: 1024 ccatgacaaatttgaag 1040
|||| |||| |||||||
Sbjct: 279 ccataacaagtttgaag 263
>gb|BQ465196.1|BQ465196 HU02O17r HU Hordeum vulgare subsp. vulgare cDNA clone HU02O17
5-PRIME, mRNA sequence
Length = 597
Score = 174 bits (88), Expect = 5e-042
Identities = 226/272 (83%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| || ||||| || |||||||| || || || || || ||||||
Sbjct: 236 gaaactgacagtgaagattctgatgttagcggttctgaaggagaggacacatcttggatt 295
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||||||||| ||||| ||||| ||||||||| |||||||||| || |||
Sbjct: 296 tcatggttctgtagcttgcgaggcaacgaattcttctgtgagattgatgatgattatata 355
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| ||||||||||| |||||||| |||||||| || || ||||||||||| |||||||||
Sbjct: 356 caggatgatttcaatctctgtggcctaagcaatcaggtgccatattatgattatgcactt 415
Query: 592 gatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaa 651
||||| || |||| |||| ||||| |||||||| | || || || ||||||||||||
Sbjct: 416 gatctcatcctagacattgagtcttctaatggtgatgtattcactgaggagcaaaatgaa 475
Query: 652 cttattgaatcagctgctgagatgctctatgg 683
| ||||| ||| |||| |||||||| |||||
Sbjct: 476 ttaattgagtcatctgcagagatgctgtatgg 507
>gb|BQ467754.1|BQ467754 HS04M10r HS Hordeum vulgare subsp. vulgare cDNA clone HS04M10
5-PRIME, mRNA sequence
Length = 659
Score = 174 bits (88), Expect = 5e-042
Identities = 226/272 (83%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| || ||||| || |||||||| || || || || || ||||||
Sbjct: 347 gaaactgacagtgaagattctgatgttagcggttctgaaggagaggacacatcttggatt 406
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||||||||| ||||| ||||| ||||||||| |||||||||| || |||
Sbjct: 407 tcatggttctgtagcttgcgaggcaacgaattcttctgtgagattgatgatgattatata 466
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| ||||||||||| |||||||| |||||||| || || ||||||||||| |||||||||
Sbjct: 467 caggatgatttcaatctctgtggcctaagcaatcaggtgccatattatgattatgcactt 526
Query: 592 gatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaa 651
||||| || |||| |||| ||||| |||||||| | || || || ||||||||||||
Sbjct: 527 gatctcatcctagacattgagtcttctaatggtgatgtattcactgaggagcaaaatgaa 586
Query: 652 cttattgaatcagctgctgagatgctctatgg 683
| ||||| ||| |||| |||||||| |||||
Sbjct: 587 ttaattgagtcatctgcagagatgctgtatgg 618
>gb|BQ470277.1|BQ470277 HX02G12r HX Hordeum vulgare subsp. vulgare cDNA clone HX02G12
5-PRIME, mRNA sequence
Length = 652
Score = 174 bits (88), Expect = 5e-042
Identities = 226/272 (83%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| || ||||| || |||||||| || || || || || ||||||
Sbjct: 293 gaaactgacagtgaagattctgatgttagcggttctgaaggagaggacacatcttggatt 352
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||||||||| ||||| ||||| ||||||||| |||||||||| || |||
Sbjct: 353 tcatggttctgtagcttgcgaggcaacgaattcttctgtgagattgatgatgattatata 412
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| ||||||||||| |||||||| |||||||| || || ||||||||||| |||||||||
Sbjct: 413 caggatgatttcaatctctgtggcctaagcaatcaggtgccatattatgattatgcactt 472
Query: 592 gatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaa 651
||||| || |||| |||| ||||| |||||||| | || || || ||||||||||||
Sbjct: 473 gatctcatcctagacattgagtcttctaatggtgatgtattcactgaggagcaaaatgaa 532
Query: 652 cttattgaatcagctgctgagatgctctatgg 683
| ||||| ||| |||| |||||||| |||||
Sbjct: 533 ttaattgagtcatctgcagagatgctgtatgg 564
>gb|BU989668.1|BU989668 HF22F24r HF Hordeum vulgare subsp. vulgare cDNA clone HF22F24
5-PRIME, mRNA sequence
Length = 486
Score = 174 bits (88), Expect = 5e-042
Identities = 226/272 (83%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| || ||||| || |||||||| || || || || || ||||||
Sbjct: 177 gaaactgacagtgaagattctgatgttagcggttctgaaggagaggacacatcttggatt 236
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||||||||| ||||| ||||| ||||||||| |||||||||| || |||
Sbjct: 237 tcatggttctgtagcttgcgaggcaacgaattcttctgtgagattgatgatgattatata 296
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| ||||||||||| |||||||| |||||||| || || ||||||||||| |||||||||
Sbjct: 297 caggatgatttcaatctctgtggcctaagcaatcaggtgccatattatgattatgcactt 356
Query: 592 gatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaa 651
||||| || |||| |||| ||||| |||||||| | || || || ||||||||||||
Sbjct: 357 gatctcatcctagacattgagtcttctaatggtgatgtattcactgaggagcaaaatgaa 416
Query: 652 cttattgaatcagctgctgagatgctctatgg 683
| ||||| ||| |||| |||||||| |||||
Sbjct: 417 ttaattgagtcatctgcagagatgctgtatgg 448
>gb|BU990653.1|BU990653 HF25K21r HF Hordeum vulgare subsp. vulgare cDNA clone HF25K21
5-PRIME, mRNA sequence
Length = 674
Score = 174 bits (88), Expect = 5e-042
Identities = 226/272 (83%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| || ||||| || |||||||| || || || || || ||||||
Sbjct: 176 gaaactgacagtgaagattctgatgttagcggttctgaaggagaggacacatcttggatt 235
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||||||||| ||||| ||||| ||||||||| |||||||||| || |||
Sbjct: 236 tcatggttctgtagcttgcgaggcaacgaattcttctgtgagattgatgatgattatata 295
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| ||||||||||| |||||||| |||||||| || || ||||||||||| |||||||||
Sbjct: 296 caggatgatttcaatctctgtggcctaagcaatcaggtgccatattatgattatgcactt 355
Query: 592 gatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaa 651
||||| || |||| |||| ||||| |||||||| | || || || ||||||||||||
Sbjct: 356 gatctcatcctagacattgagtcttctaatggtgatgtattcactgaggagcaaaatgaa 415
Query: 652 cttattgaatcagctgctgagatgctctatgg 683
| ||||| ||| |||| |||||||| |||||
Sbjct: 416 ttaattgagtcatctgcagagatgctgtatgg 447
>gb|BU998184.1|BU998184 HI10E02r HI Hordeum vulgare subsp. vulgare cDNA clone HI10E02
5-PRIME, mRNA sequence
Length = 587
Score = 174 bits (88), Expect = 5e-042
Identities = 226/272 (83%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| || ||||| || |||||||| || || || || || ||||||
Sbjct: 293 gaaactgacagtgaagattctgatgttagcggttctgaaggagaggacacatcttggatt 352
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||||||||| ||||| ||||| ||||||||| |||||||||| || |||
Sbjct: 353 tcatggttctgtagcttgcgaggcaacgaattcttctgtgagattgatgatgattatata 412
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| ||||||||||| |||||||| |||||||| || || ||||||||||| |||||||||
Sbjct: 413 caggatgatttcaatctctgtggcctaagcaatcaggtgccatattatgattatgcactt 472
Query: 592 gatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaa 651
||||| || |||| |||| ||||| |||||||| | || || || ||||||||||||
Sbjct: 473 gatctcatcctagacattgagtcttctaatggtgatgtattcactgaggagcaaaatgaa 532
Query: 652 cttattgaatcagctgctgagatgctctatgg 683
| ||||| ||| |||| |||||||| |||||
Sbjct: 533 ttaattgagtcatctgcagagatgctgtatgg 564
>gb|CA007157.1|CA007157 HU06P10r HU Hordeum vulgare subsp. vulgare cDNA clone HU06P10
5-PRIME, mRNA sequence
Length = 561
Score = 174 bits (88), Expect = 5e-042
Identities = 226/272 (83%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| || ||||| || |||||||| || || || || || ||||||
Sbjct: 237 gaaactgacagtgaagattctgatgttagcggttctgaaggagaggacacatcttggatt 296
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||||||||| ||||| ||||| ||||||||| |||||||||| || |||
Sbjct: 297 tcatggttctgtagcttgcgaggcaacgaattcttctgtgagattgatgatgattatata 356
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| ||||||||||| |||||||| |||||||| || || ||||||||||| |||||||||
Sbjct: 357 caggatgatttcaatctctgtggcctaagcaatcaggtgccatattatgattatgcactt 416
Query: 592 gatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaa 651
||||| || |||| |||| ||||| |||||||| | || || || ||||||||||||
Sbjct: 417 gatctcatcctagacattgagtcttctaatggtgatgtattcactgaggagcaaaatgaa 476
Query: 652 cttattgaatcagctgctgagatgctctatgg 683
| ||||| ||| |||| |||||||| |||||
Sbjct: 477 ttaattgagtcatctgcagagatgctgtatgg 508
>gb|CA032718.1|CA032718 HX14A06r HX Hordeum vulgare subsp. vulgare cDNA clone HX14A06
5-PRIME, mRNA sequence
Length = 633
Score = 174 bits (88), Expect = 5e-042
Identities = 226/272 (83%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| || ||||| || |||||||| || || || || || ||||||
Sbjct: 314 gaaactgacagtgaagattctgatgttagcggttctgaaggagaggacacatcttggatt 373
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||||||||| ||||| ||||| ||||||||| |||||||||| || |||
Sbjct: 374 tcatggttctgtagcttgcgaggcaacgaattcttctgtgagattgatgatgattatata 433
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| ||||||||||| |||||||| |||||||| || || ||||||||||| |||||||||
Sbjct: 434 caggatgatttcaatctctgtggcctaagcaatcaggtgccatattatgattatgcactt 493
Query: 592 gatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaa 651
||||| || |||| |||| ||||| |||||||| | || || || ||||||||||||
Sbjct: 494 gatctcatcctagacattgagtcttctaatggtgatgtattcactgaggagcaaaatgaa 553
Query: 652 cttattgaatcagctgctgagatgctctatgg 683
| ||||| ||| |||| |||||||| |||||
Sbjct: 554 ttaattgagtcatctgcagagatgctgtatgg 585
>gb|BG415776.2|BG415776 HVSMEk0007M10f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007M10f, mRNA sequence
Length = 664
Score = 172 bits (87), Expect = 2e-041
Identities = 215/258 (83%)
Strand = Plus / Plus
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||| |||| ||||||||| |||| |||||||| |||||||| || ||||||||||||
Sbjct: 339 gacagtgaagcatcagatgttggtggctctgatggagaagatacctcatggatttcatgg 398
Query: 478 ttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagat 537
| || | | ||| || ||||| || |||||||| || |||||||| ||||| ||||||
Sbjct: 399 tattgcaacctaagagggaatgagttcttctgtgaagtcgatgatgattacattcaagat 458
Query: 538 gatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctg 597
|| ||||| || |||||||| |||| ||||||||||||||||| ||||| ||||||||
Sbjct: 459 gacttcaatctttgtgggcttagcagtcaagttccatattatgattatgctcttgatctc 518
Query: 598 atattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaacttatt 657
|| |||||| | || ||||||||||||||||| || |||||||| || ||||| || |
Sbjct: 519 attttagatatcgagtcttcccatggtgatattttcacagaagaacanaatgagctagtg 578
Query: 658 gaatcagctgctgagatg 675
||||||||||||||||||
Sbjct: 579 gaatcagctgctgagatg 596
>gb|CA021658.1|CA021658 HZ40K23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ40K23
5-PRIME, mRNA sequence
Length = 567
Score = 161 bits (81), Expect = 7e-038
Identities = 195/233 (83%)
Strand = Plus / Plus
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||| |||| ||||||||| |||| |||||||| |||||||| || ||||||||||||
Sbjct: 334 gacagtgaagcatcagatgttggtggctctgatggagaagatacctcatggatttcatgg 393
Query: 478 ttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagat 537
| || | | ||| || ||||| || |||||||| || |||||||| ||||| ||||||
Sbjct: 394 tattgcaacctaagagggaatgagttcttctgtgaagtcgatgatgattacattcaagat 453
Query: 538 gatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctg 597
|| ||||| || |||||||| |||| ||||||||||||||||| ||||| ||||||||
Sbjct: 454 gacttcaatctttgtgggcttagcagtcaagttccatattatgattatgctcttgatctc 513
Query: 598 atattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatga 650
|| |||||| | || ||||||||||||||||| || |||||||| ||||||||
Sbjct: 514 attttagatatcgagtcttcccatggtgatattttcacagaagaacaaaatga 566
>gb|CA004802.1|CA004802 HS18L18r HS Hordeum vulgare subsp. vulgare cDNA clone HS18L18
5-PRIME, mRNA sequence
Length = 402
Score = 155 bits (78), Expect = 4e-036
Identities = 153/178 (85%)
Strand = Plus / Plus
Query: 245 ggaagcggatcggcgagcctatggacagatcgtctccatctacgtcgtgggggttctccg 304
|||||||||| |||||| | |||||||| || || || || ||||| |||||||||||||
Sbjct: 223 ggaagcggataggcgaggcgatggacaggtcctccccgtcgacgtcctgggggttctccg 282
Query: 305 gagggcgcgagaaggagcggatcggcgtgggcaagcagccggagatgcctcgctccggcg 364
|||| ||||||| ||| ||||||| || || |||||||||||| |||| ||||||||||
Sbjct: 283 gaggacgcgagagggaccggatcgccgccgggaagcagccggaggtgccccgctccggcg 342
Query: 365 gcggatccaccgccatgtccaagagcaagctctctgacgcagaatcagaaactgacag 422
||||||||||||||||||||||| ||||||| || || | |||||| || ||||||||
Sbjct: 343 gcggatccaccgccatgtccaagggcaagctgtccgatggagaatcggacactgacag 400
>gb|AW982908.2|AW982908 HVSMEg0004I13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004I13f, mRNA sequence
Length = 554
Score = 139 bits (70), Expect = 3e-031
Identities = 184/222 (82%)
Strand = Plus / Plus
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||| |||| ||||||||| |||| |||||||| |||||||| || ||||||||||||
Sbjct: 224 gacagtgaagcatcagatgttggtggctctgatggagaagatacctcatggatttcatgg 283
Query: 478 ttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagat 537
| || | | ||| || ||||| || |||||||| || |||||||| ||||| ||||||
Sbjct: 284 tattgcaacctaagagggaatgagttcttctgtgaagtcgatgatgattacattcaagat 343
Query: 538 gatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctg 597
|| ||||| || |||||||| |||| ||||||||||||||||| ||||| ||||||||
Sbjct: 344 gacttcaatctttgtgggcttagcagtcaagttccatattatgattatgctcttgatctc 403
Query: 598 atattagatgttgaatcttcccatggtgatatgttgacagaa 639
|| |||||| | || |||||||||||||||| || ||||||
Sbjct: 404 attttagatatcgaggcttcccatggtgatattttcacagaa 445
>gb|BF617114.2|BF617114 HVSMEc0014K08f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0014K08f, mRNA sequence
Length = 782
Score = 121 bits (61), Expect = 6e-026
Identities = 151/181 (83%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| || ||||| || |||||||| || || || || || ||||||
Sbjct: 333 gaaactgacagtgaagattctgatgttagcggttctgaaggagaggacacatcttggatt 392
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||||||||| ||||| ||||| ||||| ||| |||||||||| || |||
Sbjct: 393 tcatggttctgtagcttgcgaggcaacgaattcttctgggagattgatgatgattatata 452
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| ||||||||||| |||||||| |||||||| || || ||| |||||| |||||||||
Sbjct: 453 caggatgatttcaatctctgtggcctaagcaatcaggtgccaatttatgattatgcactt 512
Query: 592 g 592
|
Sbjct: 513 g 513
>gb|BF629961.2|BF629961 HVSMEb0007H14f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0007H14f, mRNA sequence
Length = 500
Score = 99.6 bits (50), Expect = 2e-019
Identities = 134/162 (82%)
Strand = Plus / Plus
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||| |||| ||||||||| |||| |||||||| |||||||| || ||||||||||||
Sbjct: 339 gacagtgaagcatcagatgttggtggctctgatggagaagatacctcatggatttcatgg 398
Query: 478 ttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagat 537
| || | | ||| || ||||| || |||||||| || |||||||| ||||| ||||||
Sbjct: 399 tattgcaacctaagagggaatgagttcttctgtgaagtcgatgatgattacattcaagat 458
Query: 538 gatttcaacctctgtgggctaagcaaccaagttccatattat 579
|| ||||| || |||||||| |||| |||||||||||||||
Sbjct: 459 gacttcaatctttgtgggcttagcagtcaagttccatattat 500
>gb|AV923038.1|AV923038 AV923038 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3h20 5', mRNA sequence
Length = 492
Score = 79.8 bits (40), Expect = 2e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||| |||| ||||||||| |||| |||||||| |||||||| || ||||||||||||
Sbjct: 352 gacagtgaagcatcagatgttggtggctctgatggagaagatacctcatggatttcatgg 411
Query: 478 ttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagat 537
| || | | ||| || ||||| || |||||||| || |||||||| ||||| ||||||
Sbjct: 412 tattgcaacctaagagggaatgagttcttctgtgaagtcgatgatgattacattcaagat 471
Query: 538 gatttcaacctctgtgggct 557
|| ||||| || ||||||||
Sbjct: 472 gacttcaatctttgtgggct 491
>gb|AV931983.1|AV931983 AV931983 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal0a11 5', mRNA sequence
Length = 483
Score = 79.8 bits (40), Expect = 2e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||| |||| ||||||||| |||| |||||||| |||||||| || ||||||||||||
Sbjct: 342 gacagtgaagcatcagatgttggtggctctgatggagaagatacctcatggatttcatgg 401
Query: 478 ttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagat 537
| || | | ||| || ||||| || |||||||| || |||||||| ||||| ||||||
Sbjct: 402 tattgcaacctaagagggaatgagttcttctgtgaagtcgatgatgattacattcaagat 461
Query: 538 gatttcaacctctgtgggct 557
|| ||||| || ||||||||
Sbjct: 462 gacttcaatctttgtgggct 481
>gb|BE194657.3|BE194657 HVSMEh0086G10f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0086G10f, mRNA sequence
Length = 849
Score = 58.0 bits (29), Expect = 8e-007
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 622 ggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgagatgctctat 681
|||||||| || |||||||| |||||||| || | |||||||||||||||||| | |||
Sbjct: 230 ggtgatattttcacagaagaacaaaatgagctagtggaatcagctgctgagatgttgtat 289
Query: 682 ggattgattcatg 694
|| |||||||||
Sbjct: 290 gggctgattcatg 302
>gb|BM816745.1|BM816745 HB02D10_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB02D10_T3.ab1 similar to Protein kinase,, mRNA sequence
Length = 848
Score = 58.0 bits (29), Expect = 8e-007
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 622 ggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgagatgctctat 681
|||||||| || |||||||| |||||||| || | |||||||||||||||||| | |||
Sbjct: 289 ggtgatattttcacagaagaacaaaatgagctagtggaatcagctgctgagatgttgtat 348
Query: 682 ggattgattcatg 694
|| |||||||||
Sbjct: 349 gggctgattcatg 361
>gb|BF265820.1|BF265820 HV_CEa0013G19f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013G19f, mRNA sequence
Length = 771
Score = 54.0 bits (27), Expect = 1e-005
Identities = 141/179 (78%)
Strand = Plus / Plus
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||| |||| || |||||| |||| |||||||| |||||||| || ||||||||||||
Sbjct: 252 gacagtgaagcatgagatgtcggtggctctgatggagaagatacctcatggatttcatgg 311
Query: 478 ttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagat 537
|| | | ||| || ||||| || |||||||| | | |||||| ||| | | ||||
Sbjct: 312 gattgcaacctaagagggaatgacttcttctgtgacgacggtgatgattacgttcgagat 371
Query: 538 gatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatct 596
|| ||||| | || ||||| |||| ||||||||||||||||| ||||| ||||||||
Sbjct: 372 gacttcaatgtttgcgggctcagcagtcaagttccatattatgattatgctcttgatct 430
>gb|CV062418.1|CV062418 BNEL79g9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL79g9 5' similar to possible
protein kinase CK2 regulatory subunit, mRNA sequence
Length = 700
Score = 52.0 bits (26), Expect = 5e-005
Identities = 253/329 (76%)
Strand = Plus / Minus
Query: 622 ggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgagatgctctat 681
|||||||| || |||||||| |||||||| || | |||||| ||||||||||| | |||
Sbjct: 700 ggtgatattttcacagaagaacaaaatgagctagtggaatcacctgctgagatgttgtat 641
Query: 682 ggattgattcatgttcggtatattattacaagtaaagggctgtccgcaatgctggataag 741
|| ||||||||| || || ||| | || ||||||||| || | || |||||||| ||
Sbjct: 640 ggnctgattcatgcacgatacattctgaccagtaaagggttggctgctatgctggagaaa 581
Query: 742 tacaggaacgttgagttcggcagatgccctcgagtgaattgcagcggccaaccatgcctt 801
|||| |||| || || || |||| || || || ||||| | || |||||||||||
Sbjct: 580 tacaagaactacgactttggacgatgtccacgtgtttattgctgtggacaaccatgccta 521
Query: 802 cctgttgggcaatcggatgttcctcgttcaagtacggtgaagatttactgccctagatgt 861
|| |||| ||||| ||| ||| || || ||||| |||||||| ||||| |||| ||
Sbjct: 520 ccaattggacaatcagatattcaccgatctagtacagtgaagatatactgtcctaagtgc 461
Query: 862 gaagacatctacactccaagatccaaatatctaagcaacatcgacgggacttactttggg 921
|||||||||||| |||| | || ||||| | | |||| || ||||| | |||| ||||
Sbjct: 460 gaagacatctactatccacgttctaaataccaaggcaatattgacggagcctactatggg 401
Query: 922 acaacattcccccacttgttcctgatgac 950
|||||||| || ||| | || ||||||||
Sbjct: 400 acaacatttcctcacctttttctgatgac 372
>gb|BF624483.3|BF624483 HVSMEa0016L04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0016L04f, mRNA sequence
Length = 765
Score = 50.1 bits (25), Expect = 2e-004
Identities = 118/149 (79%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| || ||||| | || ||||| || || || || || ||||||
Sbjct: 295 gaaactgacagtgaagattctgatgtttgcgggtctgaaggagaggacacatcttggatt 354
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
|| |||||||||||||| ||||| ||||| || |||||| ||| |||||| || |
Sbjct: 355 tcctggttctgtagcttgcgaggcaacgaattcttgtgtgagattggtgatgattatgtc 414
Query: 532 caagatgatttcaacctctgtgggctaag 560
|| ||||||||||| ||||| || |||||
Sbjct: 415 caggatgatttcaatctctggggtctaag 443
>gb|BG414493.2|BG414493 HVSMEk0002K22f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0002K22f, mRNA sequence
Length = 903
Score = 48.1 bits (24), Expect = 7e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||| |||| ||||||||| |||| |||||||| ||| |||| || ||||||||||||
Sbjct: 332 gacagtgaagcatcagatgttggtggctctgatggagaaaatacctcatggatttcatgg 391
>gb|BI950575.1|BI950575 HVSMEl0021H10f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0021H10f, mRNA sequence
Length = 705
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 944 tgatgacatacccgcatttgaagccccagaagccgctgcagcaatacgttcccagggtat 1003
|||||||||| || || ||||||| |||||||| |||||||||||||| ||||| |
Sbjct: 404 tgatgacatatccacacctgaagccacagaagccatcacagcaatacgttccaagggttt 463
Query: 1004 ttgggttcaaa 1014
|||| ||||||
Sbjct: 464 ttggcttcaaa 474
>gb|BM101420.1|BM101420 EBpi01_SQ003_M19_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_M19 5', mRNA sequence
Length = 339
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 944 tgatgacatacccgcatttgaagccccagaagccgctgcagcaatacgttcccagggtat 1003
|||||||||| || || ||||||| |||||||| |||||||||||||| ||||| |
Sbjct: 45 tgatgacatatccacacctgaagccacagaagccatcacagcaatacgttccaagggttt 104
Query: 1004 ttgggttcaaa 1014
|||| ||||||
Sbjct: 105 ttggcttcaaa 115
>gb|BQ658439.1|BQ658439 HB09C11w BC Hordeum vulgare subsp. vulgare cDNA clone HB09C11
3-PRIME, mRNA sequence
Length = 676
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 944 tgatgacatacccgcatttgaagccccagaagccgctgcagcaatacgttcccagggtat 1003
|||||||||| || || ||||||| |||||||| |||||||||||||| ||||| |
Sbjct: 294 tgatgacatatccacacctgaagccacagaagccatcacagcaatacgttccaagggttt 235
Query: 1004 ttgggttcaaa 1014
|||| ||||||
Sbjct: 234 ttggcttcaaa 224
>gb|BQ662841.1|BQ662841 HS04G18u HS Hordeum vulgare subsp. vulgare cDNA clone HS04G18
3-PRIME, mRNA sequence
Length = 435
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 944 tgatgacatacccgcatttgaagccccagaagccgctgcagcaatacgttcccagggtat 1003
|||||||||| || || ||||||| |||||||| |||||||||||||| ||||| |
Sbjct: 293 tgatgacatatccacacctgaagccacagaagccatcacagcaatacgttccaagggttt 234
Query: 1004 ttgggttcaaa 1014
|||| ||||||
Sbjct: 233 ttggcttcaaa 223
>gb|BQ662921.1|BQ662921 HS04M10u HS Hordeum vulgare subsp. vulgare cDNA clone HS04M10
3-PRIME, mRNA sequence
Length = 588
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 944 tgatgacatacccgcatttgaagccccagaagccgctgcagcaatacgttcccagggtat 1003
|||||||||| || || ||||||| |||||||| |||||||||||||| ||||| |
Sbjct: 293 tgatgacatatccacacctgaagccacagaagccatcacagcaatacgttccaagggttt 234
Query: 1004 ttgggttcaaa 1014
|||| ||||||
Sbjct: 233 ttggcttcaaa 223
>gb|BQ663500.1|BQ663500 HU02O17u HU Hordeum vulgare subsp. vulgare cDNA clone HU02O17
3-PRIME, mRNA sequence
Length = 596
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 944 tgatgacatacccgcatttgaagccccagaagccgctgcagcaatacgttcccagggtat 1003
|||||||||| || || ||||||| |||||||| |||||||||||||| ||||| |
Sbjct: 294 tgatgacatatccacacctgaagccacagaagccatcacagcaatacgttccaagggttt 235
Query: 1004 ttgggttcaaa 1014
|||| ||||||
Sbjct: 234 ttggcttcaaa 224
>gb|CB859369.1|CB859369 HI10E02w HI Hordeum vulgare subsp. vulgare cDNA clone HI10E02
3-PRIME, mRNA sequence
Length = 616
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 944 tgatgacatacccgcatttgaagccccagaagccgctgcagcaatacgttcccagggtat 1003
|||||||||| || || ||||||| |||||||| |||||||||||||| ||||| |
Sbjct: 294 tgatgacatatccacacctgaagccacagaagccatcacagcaatacgttccaagggttt 235
Query: 1004 ttgggttcaaa 1014
|||| ||||||
Sbjct: 234 ttggcttcaaa 224
Score = 40.1 bits (20), Expect = 0.18
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 640 gagcaaaatgaacttattgaatcagctgctgagatgctctatgg 683
|||||||||||| | ||||| ||| |||| |||||||| |||||
Sbjct: 598 gagcaaaatgaattaattgagtcatctgcagagatgctgtatgg 555
>gb|AV927744.1|AV927744 AV927744 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3h20 3', mRNA sequence
Length = 607
Score = 42.1 bits (21), Expect = 0.046
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 658 gaatcagctgctgagatgctctatggattgattcatg 694
|||||||||||||||||| | ||||| |||||||||
Sbjct: 604 gaatcagctgctgagatgttgtatgggctgattcatg 568
Score = 40.1 bits (20), Expect = 0.18
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 790 caaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatttac 849
||||||||||| || |||| ||||| ||| ||| || || ||||| |||||||| |||
Sbjct: 472 caaccatgcctaccaattggacaatcagatattcaccgatctagtacagtgaagatatac 413
Query: 850 tgccctagatgtgaagacatctac 873
|| |||| || ||||||||||||
Sbjct: 412 tgtcctaagtgcgaagacatctac 389
>gb|CV054303.1|CV054303 BNEL109a5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL109a5 5' similar to
OJ1058_B11.17, mRNA sequence
Length = 602
Score = 42.1 bits (21), Expect = 0.046
Identities = 126/161 (78%)
Strand = Plus / Minus
Query: 790 caaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatttac 849
||||||||||| || |||| ||||| ||| ||| || || ||||| |||||||| |||
Sbjct: 532 caaccatgcctaccaattggacaatcagatattcaccgatctagtacagtgaagatatac 473
Query: 850 tgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatcgacggg 909
|| |||| || |||||||||||| |||| | || ||||| | | |||| || |||||
Sbjct: 472 tgtcctaagtgcgaagacatctactatccacgttctaaataccaaggcaatattgacgga 413
Query: 910 acttactttgggacaacattcccccacttgttcctgatgac 950
| |||| |||||||||||| || ||| | || ||||||||
Sbjct: 412 gcctactatgggacaacatttcctcacctttttctgatgac 372
>gb|BG300415.1|BG300415 HVSMEb0016P04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0016P04f, mRNA sequence
Length = 625
Score = 40.1 bits (20), Expect = 0.18
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 904 gacgggacttactttgggacaacattcccccacttgttcctgatgacatacccgcatttg 963
|||||| | ||||||||||| || || || || ||||| ||||||| || | || |||
Sbjct: 66 gacggggcatactttgggacgacgtttcctcatatgttcatgatgacccactcacagttg 125
Query: 964 aagccccagaagccgctgcagcaatacgttcc 995
||||| |||||||| |||||||||||||||
Sbjct: 126 aagccacagaagccagcgcagcaatacgttcc 157
>gb|BM377223.2|BM377223 EBem05_SQ004_H19_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ004_H19 5', mRNA sequence
Length = 538
Score = 40.1 bits (20), Expect = 0.18
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 790 caaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatttac 849
||||||||||| || |||| ||||| ||| ||| || || ||||| |||||||| |||
Sbjct: 498 caaccatgcctaccaattggacaatcagatattcaccgatctagtacagtgaagatatac 439
Query: 850 tgccctagatgtgaagacatctac 873
|| |||| || ||||||||||||
Sbjct: 438 tgtcctaagtgcgaagacatctac 415
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 146,469
Number of Sequences: 312970
Number of extensions: 146469
Number of successful extensions: 37380
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 44
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 37276
Number of HSP's gapped (non-prelim): 85
length of query: 1311
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1292
effective length of database: 169,188,109
effective search space: 218591036828
effective search space used: 218591036828
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)