BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521353.2.1
(1279 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ762868.1|BQ762868 EBro02_SQ006_I12_R root, 3 week, hyd... 611 e-173
gb|BQ765051.1|BQ765051 EBca01_SQ005_L18_R carpel, pre-anthe... 603 e-171
gb|CA007593.1|CA007593 HU08H01r HU Hordeum vulgare subsp. v... 295 2e-078
gb|BM373085.2|BM373085 EBma04_SQ003_A16_R maternal, 10 DPA,... 186 1e-045
gb|BQ764116.1|BQ764116 EBro03_SQ006_G08_R root, 3 week, wat... 186 1e-045
gb|BU987907.1|BU987907 HF16B16r HF Hordeum vulgare subsp. v... 180 8e-044
gb|BU987948.1|BU987948 HF16D20r HF Hordeum vulgare subsp. v... 180 8e-044
gb|CA003616.1|CA003616 HS15A16r HS Hordeum vulgare subsp. v... 125 4e-027
gb|CA007353.1|CA007353 HU07K19r HU Hordeum vulgare subsp. v... 121 6e-026
gb|BG368245.2|BG368245 HVSMEi0017B05f Hordeum vulgare 20 DA... 96 3e-018
gb|CA005867.1|CA005867 HU08H01u HU Hordeum vulgare subsp. v... 90 2e-016
gb|CA027915.1|CA027915 HZ60G23r HZ Hordeum vulgare subsp. v... 82 5e-014
gb|CA028055.1|CA028055 HZ60N16r HZ Hordeum vulgare subsp. v... 82 5e-014
gb|CK124312.1|CK124312 BES1824108f09 BES1824 Hordeum vulgar... 64 1e-008
gb|AJ462714.1|AJ462714 AJ462714 S00002 Hordeum vulgare subs... 58 7e-007
gb|CA012168.1|CA012168 HT04K10r HT Hordeum vulgare subsp. v... 56 3e-006
>gb|BQ762868.1|BQ762868 EBro02_SQ006_I12_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ006_I12 5', mRNA sequence
Length = 699
Score = 611 bits (308), Expect = e-173
Identities = 525/595 (88%), Gaps = 2/595 (0%)
Strand = Plus / Minus
Query: 603 agccagtatcatggtggcaaagggtgccatgtagtacaccgtgttaatgctgtcaaactt 662
||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||
Sbjct: 699 agccagtatcatggtggcaaaaggtgccatgtagtatactgtgttaatgctgtcaaattt 640
Query: 663 gtatccatggagtagggactctgccaagatggtctttgtagacgtagccaggcagccaac 722
|||||| ||||| ||||||||||||||||||||||| |||||||| || |||||||| |
Sbjct: 639 gtatccgtggagcagggactctgccaagatggtcttggtagacgtggcgaggcagcctat 580
Query: 723 catggcagcacagaaaccgaaaatgttgaagctaagctctgtcaccgaagtcaggagtat 782
|||||||||||||||||| |||||||| || |||||||| |||| || |||||||| ||
Sbjct: 579 catggcagcacagaaaccaaaaatgttaaa-ctaagctccgtcattgaggtcaggaggat 521
Query: 783 tccgcc-aactatagggaccagcgaagcccatatgcgccactcgaaatgcttgctccaga 841
|| || | |||| ||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct: 520 ccccccganctatcgggaccagcgaagcccatatgcgccactcaaagtgcttgctccaaa 461
Query: 842 ctagccactgcagaataactgtggttgcaggagtgaaagatttgattgtctgcatgaagg 901
| | ||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||
Sbjct: 460 ccaaccactgcagaataactgtggttgcaggggtgaacgatttaatggtctgcatgaagg 401
Query: 902 agactgggatgtagcgcaagctgacatttcccagcacaatgtttatgcagaagacgaagg 961
|||| ||||||||||||| ||| |||||||| ||||||||||| |||||||| |||||||
Sbjct: 400 agaccgggatgtagcgcaggctaacatttcctagcacaatgttcatgcagaacacgaagg 341
Query: 962 acattggaaatatccttttccagcggtcctccggttcaacttgaatcaggggtttcgcct 1021
|||| || || ||||| |||||||||||||| || || || ||||||| || || ||||
Sbjct: 340 acatggggaagatcctcttccagcggtcctcgggctcgacctgaatcaatggctttgcct 281
Query: 1022 tgaggacatggattgcaatgtaagctccaatggaagagcagatgaagtggacgcaggaca 1081
|||| || ||||| || | |||||| || || || ||||| |||||||||||||||||||
Sbjct: 280 tgagcacgtggatcgcgacgtaagccccgatagaggagcatatgaagtggacgcaggaca 221
Query: 1082 cggtgagagggaacttgaaatccagtttctggaagatccacttgttcatgatgatgacag 1141
| || | ||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct: 220 ccgtcaaggggaacttgaaatccagcttctggaagatccacttgttgatgatgatgacgg 161
Query: 1142 tgacgttgaagccccaccactggaggatggcgagcaccgcgcgcagggtgcccag 1196
||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 160 tgacgttgaagccccaccactggaggatggcgagcaccgcgcgcatgctgcccag 106
>gb|BQ765051.1|BQ765051 EBca01_SQ005_L18_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_L18 5', mRNA sequence
Length = 700
Score = 603 bits (304), Expect = e-171
Identities = 515/584 (88%), Gaps = 1/584 (0%)
Strand = Plus / Minus
Query: 603 agccagtatcatggtggcaaagggtgccatgtagtacaccgtgttaatgctgtcaaactt 662
||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| ||
Sbjct: 700 agccagtatcatggtggcaaaaggtgccatgtagtataatgtgttaatgctgtcaaattt 641
Query: 663 gtatccatggagtagggactctgccaagatggtctttgtagacgtagccaggcagccaac 722
|||||| ||||| ||||||||||||||||||||||| |||||||| || |||||||| |
Sbjct: 640 gtatccgtggagcagggactctgccaagatggtcttggtagacgtggcgaggcagcctat 581
Query: 723 catggcagcacagaaaccgaaaatgttgaagctaagctctgtcaccgaagtcaggagtat 782
|||||||||||||||||| |||||||| || |||||||| |||| || |||||||| ||
Sbjct: 580 catggcagcacagaaaccaaaaatgttaaa-ctaagctccgtcattgaggtcaggaggat 522
Query: 783 tccgccaactatagggaccagcgaagcccatatgcgccactcgaaatgcttgctccagac 842
|| || ||||| ||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct: 521 ccccccgactatcgggaccagcgaagcccatatgcgccactcaaagtgcttgctccaaac 462
Query: 843 tagccactgcagaataactgtggttgcaggagtgaaagatttgattgtctgcatgaagga 902
| ||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||
Sbjct: 461 caaccactgcagaataactgtggttgcaggggtgaacgatttaatggtctgcatgaagga 402
Query: 903 gactgggatgtagcgcaagctgacatttcccagcacaatgtttatgcagaagacgaagga 962
||| ||||||||||||| ||| ||||||| ||||||||||| |||||||| ||||||||
Sbjct: 401 gaccgggatgtagcgcaggctaacatttcttagcacaatgttcatgcagaacacgaagga 342
Query: 963 cattggaaatatccttttccagcggtcctccggttcaacttgaatcaggggtttcgcctt 1022
||| || || ||||| |||||||||||||| || || || ||||||| || || |||||
Sbjct: 341 catggggaagatcctcttccagcggtcctcgggctcgacctgaatcaatggctttgcctt 282
Query: 1023 gaggacatggattgcaatgtaagctccaatggaagagcagatgaagtggacgcaggacac 1082
||| || ||||| || | |||||| || || || ||||| ||||||||||||||||||||
Sbjct: 281 gagcacgtggatcgcgacgtaagccccgatagaggagcatatgaagtggacgcaggacac 222
Query: 1083 ggtgagagggaacttgaaatccagtttctggaagatccacttgttcatgatgatgacagt 1142
|| | ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct: 221 cgtcaaggggaacttgaaatccagcttctggaagatccacttgttgatgatgatgacggt 162
Query: 1143 gacgttgaagccccaccactggaggatggcgagcaccgcgcgca 1186
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 gacgttgaagccccaccactggaggatggcgagcaccgcgcgca 118
>gb|CA007593.1|CA007593 HU08H01r HU Hordeum vulgare subsp. vulgare cDNA clone HU08H01
5-PRIME, mRNA sequence
Length = 512
Score = 295 bits (149), Expect = 2e-078
Identities = 291/338 (86%), Gaps = 4/338 (1%)
Strand = Plus / Minus
Query: 859 actgtggttgcaggagtgaaagatttgattgtctgcatgaaggagactgggatgtagcgc 918
|||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||| |||
Sbjct: 475 actgtggttgcaggggtgaaggatttgatagtctgcatgaaggagaccgggatgtaccgc 416
Query: 919 aagctgacatttcccagcacaatgtttatgcagaagacgaaggacattggaaatatcctt 978
| |||||| ||||| ||||||||||| |||||||| ||||||||||| || || |||||
Sbjct: 415 aggctgacgtttccgagcacaatgttcatgcagaacacgaaggacatggggaagatcctc 356
Query: 979 ttccagcggtcctccggttcaacttgaatcaggggtttcgccttgaggacatggattgca 1038
||||| |||||||| || ||||| || |||| || ||||||||||| || ||||| ||
Sbjct: 355 ttccaacggtcctcgggctcaacctgtatcaacggcttcgccttgagcacgtggatcgcg 296
Query: 1039 atgtaagctccaatggaagagcagatgaagtggacgcaggacacggtgagagggaacttg 1098
| ||| || || |||| ||| |||||||||| ||||||||| || || |||||||||
Sbjct: 295 acgtatgccccgatgg----gcatatgaagtggatgcaggacaccgtcagggggaacttg 240
Query: 1099 aaatccagtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccac 1158
||||||| |||||||||||||||||||| |||||||||| ||||||| ||||||||||
Sbjct: 239 aaatccaacttctggaagatccacttgttgttgatgatgacggtgacgtggaagccccac 180
Query: 1159 cactggaggatggcgagcaccgcgcgcagggtgcccag 1196
|||||||||||||||||||||||||||| | |||||||
Sbjct: 179 cactggaggatggcgagcaccgcgcgcatgctgcccag 142
Score = 63.9 bits (32), Expect = 1e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 603 agccagtatcatggtggcaaagggtgccatgtagta 638
||||||||||||||||||||| ||||||||||||||
Sbjct: 512 agccagtatcatggtggcaaaaggtgccatgtagta 477
>gb|BM373085.2|BM373085 EBma04_SQ003_A16_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ003_A16 5', mRNA sequence
Length = 619
Score = 186 bits (94), Expect = 1e-045
Identities = 244/294 (82%)
Strand = Plus / Minus
Query: 295 gagatcagatgcctcacatagccatagaaagtgcaaccaaccagggtgattccacacccg 354
||||| |||||||||||||| || || ||||| || || || || |||||| | || |||
Sbjct: 294 gagatgagatgcctcacatacccgtaaaaagtacagccgacgagcgtgattgcgcatccg 235
Query: 355 attgcattcattgcagagattggattccggaagatcgaccacgacactaacactgccacc 414
||||||||||||| ||||| || |||||||||||| |||||| || ||||| || ||
Sbjct: 234 attgcattcattggggagatcgggttccggaagatcagccacgaaaccaacacggcaacg 175
Query: 415 gcgactttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtag 474
|| |||||||||||||| ||||| ||||| |||||||| || || |||||||| || |||
Sbjct: 174 gcaactttaaggttgccagcaacattgaaggtcactgcggtggtcgaatggatcacatag 115
Query: 475 aagatggagaagttaaggcagaacgcaagcacccccgaacctaggatgatagtcagcgca 534
|||||||||||||| ||||| || ||||||||||| || | |||||||||| |||||| |
Sbjct: 114 aagatggagaagttcaggcaaaatgcaagcacccctgagcttaggatgataatcagcgaa 55
Query: 535 ggaacgatggaatcatgtgtgtagaaccagttcattacacctcctccttcaagc 588
| || || || || |||||||||||||||| ||||| || ||||||||||||
Sbjct: 54 gaaaagacagagtcgtgtgtgtagaaccagtcaattacgccacctccttcaagc 1
>gb|BQ764116.1|BQ764116 EBro03_SQ006_G08_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_G08 5', mRNA sequence
Length = 718
Score = 186 bits (94), Expect = 1e-045
Identities = 244/294 (82%)
Strand = Plus / Minus
Query: 295 gagatcagatgcctcacatagccatagaaagtgcaaccaaccagggtgattccacacccg 354
||||| |||||||||||||| || || ||||| || || || || |||||| | || |||
Sbjct: 294 gagatgagatgcctcacatacccgtaaaaagtacagccgacgagcgtgattgcgcatccg 235
Query: 355 attgcattcattgcagagattggattccggaagatcgaccacgacactaacactgccacc 414
||||||||||||| ||||| || |||||||||||| |||||| || ||||| || ||
Sbjct: 234 attgcattcattggggagatcgggttccggaagatcagccacgaaaccaacacggcaacg 175
Query: 415 gcgactttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtag 474
|| |||||||||||||| ||||| ||||| |||||||| || || |||||||| || |||
Sbjct: 174 gcaactttaaggttgccagcaacattgaaggtcactgcggtggtcgaatggatcacatag 115
Query: 475 aagatggagaagttaaggcagaacgcaagcacccccgaacctaggatgatagtcagcgca 534
|||||||||||||| ||||| || ||||||||||| || | |||||||||| |||||| |
Sbjct: 114 aagatggagaagttcaggcaaaatgcaagcacccctgagcttaggatgataatcagcgaa 55
Query: 535 ggaacgatggaatcatgtgtgtagaaccagttcattacacctcctccttcaagc 588
| || || || || |||||||||||||||| ||||| || ||||||||||||
Sbjct: 54 gaaaagacagagtcgtgtgtgtagaaccagtcaattacgccacctccttcaagc 1
>gb|BU987907.1|BU987907 HF16B16r HF Hordeum vulgare subsp. vulgare cDNA clone HF16B16
5-PRIME, mRNA sequence
Length = 641
Score = 180 bits (91), Expect = 8e-044
Identities = 226/271 (83%)
Strand = Plus / Minus
Query: 295 gagatcagatgcctcacatagccatagaaagtgcaaccaaccagggtgattccacacccg 354
||||| |||||||||||||| || || ||||| || || || || |||||| | || |||
Sbjct: 278 gagatgagatgcctcacatacccgtaaaaagtacagccgacgagcgtgattgcgcatccg 219
Query: 355 attgcattcattgcagagattggattccggaagatcgaccacgacactaacactgccacc 414
||||||||||||| ||||| || |||||||||||| |||||| || ||||| || ||
Sbjct: 218 attgcattcattggggagatcgggttccggaagatcagccacgaaaccaacacggcaacg 159
Query: 415 gcgactttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtag 474
|| |||||||||||||| ||||| ||||| |||||||| || || |||||||| || |||
Sbjct: 158 gcaactttaaggttgccagcaacattgaaggtcactgcggtggtcgaatggatcacatag 99
Query: 475 aagatggagaagttaaggcagaacgcaagcacccccgaacctaggatgatagtcagcgca 534
|||||||||||||| ||||| || ||||||||||| || |||||||||||| |||||| |
Sbjct: 98 aagatggagaagttcaggcaaaatgcaagcacccctgagcctaggatgataatcagcgaa 39
Query: 535 ggaacgatggaatcatgtgtgtagaaccagt 565
| || || || || ||||||||||||||||
Sbjct: 38 gaaaagacagagtcgtgtgtgtagaaccagt 8
>gb|BU987948.1|BU987948 HF16D20r HF Hordeum vulgare subsp. vulgare cDNA clone HF16D20
5-PRIME, mRNA sequence
Length = 624
Score = 180 bits (91), Expect = 8e-044
Identities = 226/271 (83%)
Strand = Plus / Minus
Query: 295 gagatcagatgcctcacatagccatagaaagtgcaaccaaccagggtgattccacacccg 354
||||| |||||||||||||| || || ||||| || || || || |||||| | || |||
Sbjct: 278 gagatgagatgcctcacatacccgtaaaaagtacagccgacgagcgtgattgcgcatccg 219
Query: 355 attgcattcattgcagagattggattccggaagatcgaccacgacactaacactgccacc 414
||||||||||||| ||||| || |||||||||||| |||||| || ||||| || ||
Sbjct: 218 attgcattcattggggagatcgggttccggaagatcagccacgaaaccaacacggcaacg 159
Query: 415 gcgactttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggatgacgtag 474
|| |||||||||||||| ||||| ||||| |||||||| || || |||||||| || |||
Sbjct: 158 gcaactttaaggttgccagcaacattgaaggtcactgcggtggtcgaatggatcacatag 99
Query: 475 aagatggagaagttaaggcagaacgcaagcacccccgaacctaggatgatagtcagcgca 534
|||||||||||||| ||||| || ||||||||||| || |||||||||||| |||||| |
Sbjct: 98 aagatggagaagttcaggcaaaatgcaagcacccctgagcctaggatgataatcagcgaa 39
Query: 535 ggaacgatggaatcatgtgtgtagaaccagt 565
| || || || || ||||||||||||||||
Sbjct: 38 gaaaagacagagtcgtgtgtgtagaaccagt 8
>gb|CA003616.1|CA003616 HS15A16r HS Hordeum vulgare subsp. vulgare cDNA clone HS15A16
5-PRIME, mRNA sequence
Length = 455
Score = 125 bits (63), Expect = 4e-027
Identities = 81/87 (93%)
Strand = Plus / Minus
Query: 1110 ctggaagatccacttgttcatgatgatgacagtgacgttgaagccccaccactggaggat 1169
|||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||
Sbjct: 142 ctggaagatccacttgttgttgatgatgacggtgacgtggaagccccaccactggaggat 83
Query: 1170 ggcgagcaccgcgcgcagggtgcccag 1196
||||||||||||||||| | |||||||
Sbjct: 82 ggcgagcaccgcgcgcatgctgcccag 56
>gb|CA007353.1|CA007353 HU07K19r HU Hordeum vulgare subsp. vulgare cDNA clone HU07K19
5-PRIME, mRNA sequence
Length = 176
Score = 121 bits (61), Expect = 6e-026
Identities = 127/149 (85%)
Strand = Plus / Minus
Query: 973 atccttttccagcggtcctccggttcaacttgaatcaggggtttcgccttgaggacatgg 1032
||||| ||||||||||||||||| || || |||||||| || |||||||||| || |||
Sbjct: 167 atcctcttccagcggtcctccggctcgacctgaatcagcggcttcgccttgaacacgtgg 108
Query: 1033 attgcaatgtaagctccaatggaagagcagatgaagtggacgcaggacacggtgagaggg 1092
|| || | |||||| | ||||| ||||| |||||||||| ||||||||| || || |||
Sbjct: 107 atcgcgacgtaagccctgatggaggagcatatgaagtggatgcaggacaccgtcaggggg 48
Query: 1093 aacttgaaatccagtttctggaagatcca 1121
|||||||||||||| ||||||||||||||
Sbjct: 47 aacttgaaatccagcttctggaagatcca 19
>gb|BG368245.2|BG368245 HVSMEi0017B05f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0017B05f, mRNA sequence
Length = 779
Score = 95.6 bits (48), Expect = 3e-018
Identities = 105/124 (84%)
Strand = Plus / Minus
Query: 1063 atgaagtggacgcaggacacggtgagagggaacttgaaatccagtttctggaagatccac 1122
|||||||||||||||||| | || | |||| |||| |||||||||| |||||||||||
Sbjct: 363 atgaagtggacgcaggaccccgtcaaggggaccttggaatccagtttttggaagatccaa 304
Query: 1123 ttgttcatgatgatgacagtgacgttgaagccccaccactggaggatggcgagcaccgcg 1182
||||| ||| | ||||| || || |||||||||| ||||||||||||||||||||||
Sbjct: 303 ttgttgatgttaatgacggtccgttttaagccccacctctggaggatggcgagcaccgcg 244
Query: 1183 cgca 1186
||||
Sbjct: 243 cgca 240
>gb|CA005867.1|CA005867 HU08H01u HU Hordeum vulgare subsp. vulgare cDNA clone HU08H01
3-PRIME, mRNA sequence
Length = 484
Score = 89.7 bits (45), Expect = 2e-016
Identities = 141/173 (81%)
Strand = Plus / Plus
Query: 295 gagatcagatgcctcacatagccatagaaagtgcaaccaaccagggtgattccacacccg 354
||||| |||||||||| ||| || ||||||| || || || || |||||| || |||
Sbjct: 309 gagatgagatgcctcagatacccgcagaaagtacagccgacgagcgtgattgtgcatccg 368
Query: 355 attgcattcattgcagagattggattccggaagatcgaccacgacactaacactgccacc 414
||||||||||||| ||||| || |||||||||||| |||||| || ||||| || ||
Sbjct: 369 attgcattcattggggagatcgggttccggaagatcagccacgaaaccaacacggcaacg 428
Query: 415 gcgactttaaggttgcctgcaacgttgaacgtcactgctgttgttgaatggat 467
|| |||||||||||||| ||||| ||||| |||||||| || || ||||||||
Sbjct: 429 gcaactttaaggttgccagcaacattgaaggtcactgcggtggtcgaatggat 481
>gb|CA027915.1|CA027915 HZ60G23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60G23
5-PRIME, mRNA sequence
Length = 472
Score = 81.8 bits (41), Expect = 5e-014
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 290 gctgcgagatcagatgcctcacatagccatagaaagtgcaaccaaccagggtgattccac 349
|||| ||||||||||||||||||||||||||||| ||||| || || || ||||| ||||
Sbjct: 264 gctgggagatcagatgcctcacatagccatagaaggtgcagccgacgagcgtgatcccac 323
Query: 350 acccgattgcattcattgcagagattggattccggaagatc 390
|||| | ||| ||||| || ||||| || || |||||||||
Sbjct: 324 accctactgcgttcatggcggagatcgggttgcggaagatc 364
>gb|CA028055.1|CA028055 HZ60N16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60N16
5-PRIME, mRNA sequence
Length = 454
Score = 81.8 bits (41), Expect = 5e-014
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 290 gctgcgagatcagatgcctcacatagccatagaaagtgcaaccaaccagggtgattccac 349
|||| ||||||||||||||||||||||||||||| ||||| || || || ||||| ||||
Sbjct: 278 gctgggagatcagatgcctcacatagccatagaaggtgcagccgacgagcgtgatcccac 337
Query: 350 acccgattgcattcattgcagagattggattccggaagatc 390
|||| | ||| ||||| || ||||| || || |||||||||
Sbjct: 338 accctactgcgttcatggcggagatcgggttgcggaagatc 378
>gb|CK124312.1|CK124312 BES1824108f09 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F098 5-PRIME, mRNA sequence
Length = 309
Score = 63.9 bits (32), Expect = 1e-008
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 295 gagatcagatgcctcacatagccatagaaagtgcaaccaaccagggtgattccacacccg 354
||||| |||||||||||||| || || ||||| || || || || |||||| | || |||
Sbjct: 99 gagatgagatgcctcacatacccgtaaaaagtacagccgacgagcgtgattgcgcatccg 40
Query: 355 attgcattcattgcagagattggattccggaagatc 390
||||||||||||| ||||| || ||||||||||||
Sbjct: 39 attgcattcattggggagatcgggttccggaagatc 4
>gb|AJ462714.1|AJ462714 AJ462714 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200017A12F1, mRNA sequence
Length = 360
Score = 58.0 bits (29), Expect = 7e-007
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 295 gagatcagatgcctcacatagccatagaaagtgcaaccaaccagggtgattccacacccg 354
||||| |||||||||||||| || || ||||| || || | || |||||| | || |||
Sbjct: 133 gagatgagatgcctcacatacccgtaaaaagtacagccgatgagcgtgattgcgcatccg 74
Query: 355 attgcattcattgcagagattggattccggaagatcgaccacgacactaacac 407
||||||||||||| ||||| || |||||||||||| |||||| || |||||
Sbjct: 73 attgcattcattggggagatcgggttccggaagatcagccacgaaaccaacac 21
>gb|CA012168.1|CA012168 HT04K10r HT Hordeum vulgare subsp. vulgare cDNA clone HT04K10
5-PRIME, mRNA sequence
Length = 182
Score = 56.0 bits (28), Expect = 3e-006
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 1159 cactggaggatggcgagcaccgcgcgca 1186
||||||||||||||||||||||||||||
Sbjct: 182 cactggaggatggcgagcaccgcgcgca 155
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 129,788
Number of Sequences: 312970
Number of extensions: 129788
Number of successful extensions: 37467
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37446
Number of HSP's gapped (non-prelim): 18
length of query: 1279
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1260
effective length of database: 169,188,109
effective search space: 213177017340
effective search space used: 213177017340
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)