BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493976.2.1
(1294 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. v... 387 e-106
gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachi... 319 1e-085
gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. v... 319 1e-085
gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. v... 315 2e-084
gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA li... 295 2e-078
gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA li... 295 2e-078
gb|BQ660413.1|BQ660413 HI02G15u HI Hordeum vulgare subsp. v... 268 4e-070
gb|BG300056.1|BG300056 HVSMEb0011D11f Hordeum vulgare seedl... 260 1e-067
gb|BF629000.2|BF629000 HVSMEb0009I04f Hordeum vulgare seedl... 252 3e-065
gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedl... 234 6e-060
gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. v... 232 2e-059
gb|BU999110.1|BU999110 HI13E18r HI Hordeum vulgare subsp. v... 204 5e-051
gb|AV921430.1|AV921430 AV921430 K. Sato unpublished cDNA li... 198 3e-049
gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedl... 192 2e-047
gb|BG343293.2|BG343293 HVSMEg0005F10f Hordeum vulgare pre-a... 172 2e-041
gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike... 161 7e-038
gb|BI951147.1|BI951147 HVSMEl0024K11f Hordeum vulgare spike... 155 4e-036
gb|BI958257.1|BI958257 HVSMEn0014B22f Hordeum vulgare rachi... 155 4e-036
gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedl... 155 4e-036
gb|CA002659.1|CA002659 HS08C15r HS Hordeum vulgare subsp. v... 155 4e-036
gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. v... 155 4e-036
gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots... 153 2e-035
gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedl... 153 2e-035
gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedl... 153 2e-035
gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachi... 153 2e-035
gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachi... 153 2e-035
gb|BI957889.1|BI957889 HVSMEn0011P08f Hordeum vulgare rachi... 153 2e-035
gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedl... 153 2e-035
gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachi... 153 2e-035
gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. v... 153 2e-035
gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, dro... 153 2e-035
gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. v... 153 2e-035
gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachi... 149 3e-034
gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DA... 149 3e-034
gb|CA020777.1|CA020777 HZ37K23r HZ Hordeum vulgare subsp. v... 149 3e-034
gb|CB875905.1|CB875905 HX09L09w HX Hordeum vulgare subsp. v... 149 3e-034
gb|BI959362.1|BI959362 HVSMEn0019G01f Hordeum vulgare rachi... 143 2e-032
gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. v... 143 2e-032
gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DA... 137 1e-030
gb|BF260514.2|BF260514 HVSMEf0022D10f Hordeum vulgare seedl... 133 2e-029
gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA li... 133 2e-029
gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green... 131 6e-029
gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedl... 125 4e-027
gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA li... 121 6e-026
gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA li... 121 6e-026
gb|BQ765644.1|BQ765644 EBro03_SQ007_C21_R root, 3 week, wat... 121 6e-026
gb|BI959974.1|BI959974 HVSMEn0022L12f Hordeum vulgare rachi... 113 1e-023
gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachi... 113 1e-023
gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedl... 113 1e-023
gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA li... 113 1e-023
gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA li... 113 1e-023
gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. v... 113 1e-023
gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hyd... 113 1e-023
gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. v... 113 1e-023
gb|CA018512.1|CA018512 HV08N14r HV Hordeum vulgare subsp. v... 113 1e-023
gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. v... 113 1e-023
gb|BI950803.1|BI950803 HVSMEl0023D24f Hordeum vulgare spike... 111 6e-023
gb|BF622348.3|BF622348 HVSMEa0002O10f Hordeum vulgare seedl... 105 4e-021
gb|BF253545.2|BF253545 HVSMEf0001D17f Hordeum vulgare seedl... 103 1e-020
gb|CA029290.1|CA029290 HZ64M12r HZ Hordeum vulgare subsp. v... 101 6e-020
gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. v... 100 2e-019
gb|CA025455.1|CA025455 HZ52D12r HZ Hordeum vulgare subsp. v... 100 2e-019
gb|BQ463996.1|BQ463996 HF01B01T HF Hordeum vulgare subsp. v... 98 9e-019
gb|AL500971.1|AL500971 AL500971 Hordeum vulgare Barke roots... 96 3e-018
gb|BQ468086.1|BQ468086 HR01O13r HR Hordeum vulgare subsp. v... 96 3e-018
gb|BI779583.2|BI779583 EBro01_SQ004_H20_R root, 3 week, hyd... 96 3e-018
gb|CA020099.1|CA020099 HV14F10r HV Hordeum vulgare subsp. v... 96 3e-018
gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, dro... 84 1e-014
gb|CA017681.1|CA017681 HV05O14r HV Hordeum vulgare subsp. v... 84 1e-014
gb|AJ462527.1|AJ462527 AJ462527 S00002 Hordeum vulgare subs... 82 5e-014
gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgar... 82 5e-014
gb|BF257377.2|BF257377 HVSMEf0012L15f Hordeum vulgare seedl... 78 8e-013
gb|BQ760589.1|BQ760589 EBro03_SQ001_N06_R root, 3 week, wat... 76 3e-012
gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, dro... 74 1e-011
gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. v... 74 1e-011
gb|AV917956.1|AV917956 AV917956 K. Sato unpublished cDNA li... 72 5e-011
gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. v... 70 2e-010
gb|BQ461095.1|BQ461095 HE01D18r HE Hordeum vulgare subsp. v... 70 2e-010
gb|BU983199.1|BU983199 HA28N24r HA Hordeum vulgare subsp. v... 70 2e-010
gb|AV916437.1|AV916437 AV916437 K. Sato unpublished cDNA li... 66 3e-009
gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, wat... 64 1e-008
gb|BF625307.2|BF625307 HVSMEa0008F17f Hordeum vulgare seedl... 62 5e-008
gb|AL508683.1|AL508683 AL508683 Hordeum vulgare Barke devel... 60 2e-007
gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedl... 60 2e-007
gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. v... 60 2e-007
gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. v... 60 2e-007
gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. v... 60 2e-007
gb|BG301240.1|BG301240 HVSMEb0020C04f Hordeum vulgare seedl... 58 8e-007
gb|BI957544.1|BI957544 HVSMEn0010B08f Hordeum vulgare rachi... 56 3e-006
gb|AL505514.1|AL505514 AL505514 Hordeum vulgare Barke roots... 54 1e-005
gb|BI777322.2|BI777322 EBro03_SQ002_N24_R root, 3 week, wat... 54 1e-005
gb|BI960698.1|BI960698 HVSMEn0025O13f Hordeum vulgare rachi... 46 0.003
gb|BU982831.1|BU982831 HA27L21r HA Hordeum vulgare subsp. v... 42 0.045
gb|AL504857.1|AL504857 AL504857 Hordeum vulgare Barke roots... 40 0.18
gb|BG343933.1|BG343933 HVSMEg0007C14f Hordeum vulgare pre-a... 40 0.18
gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. v... 40 0.18
emb|AJ234766.1|HVU234766 Hordeum vulgare genomic DNA fragme... 40 0.18
>gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
5-PRIME, mRNA sequence
Length = 631
Score = 387 bits (195), Expect = e-106
Identities = 403/470 (85%), Gaps = 2/470 (0%)
Strand = Plus / Plus
Query: 406 cgtggtgacggccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcgg 465
||||||||| |||||||||||||||||||||||| || | ||||||| ||||||
Sbjct: 128 cgtggtgactgccaccaacttctgcccgcccaacttcggcgagtcgtccgacgccggcgg 187
Query: 466 ctggtgcaacccgccgcgcgcccacttcgacatgtcgcagcccgtgttccagcgcatcgc 525
|||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 188 ctggtgcaaccctccccgcgcccacttcgacatgtcccagcccgtcttccagcgcatcgc 247
Query: 526 gctctacagggccggcattgttcccgtctcctaccgcagggttgcgtgcaacaagaaggg 585
||||||| | ||||||||||| |||||||||||||||||||| |||||| | ||||||||
Sbjct: 248 gctctaccgcgccggcattgtccccgtctcctaccgcagggtggcgtgccagaagaaggg 307
Query: 586 cggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtgaccaacgt 645
|||||| | ||||| ||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 308 cggcatcaggttcacgatcaatggccactcgtacttcaacctggtgctggtcaccaacgt 367
Query: 646 ggaaggcgccggcgacgtgcacgcggttgccgtgaaggccgac-cgctcccccgggtggc 704
|| ||| ||||||||||||||||||| |||| || | |||| ||||| | | |||||
Sbjct: 368 gggtggccccggcgacgtgcacgcggtgtccgtcaa-gtcgacgcgctcggcggcgtggc 426
Query: 705 aggccctgtcgcgcaactggggccagaactggcagagcaacacgctcctggacgggcagg 764
|||| || || ||||||||||| |||||||||||||||||| |||| || ||||||||||
Sbjct: 427 aggcgctctcacgcaactgggggcagaactggcagagcaacgcgctgctcgacgggcagg 486
Query: 765 ccctgtccttccgcgtcaccaccagcgacggccgctccgtgctctccaacaacgccgccc 824
||| || |||||||| || | || |||||| |||||| ||||||||||||||| ||
Sbjct: 487 gcctctcgttccgcgtgacggcaggcaacggccagtccgtggtctccaacaacgccgtcc 546
Query: 825 cccgcggctggtctttcggccagactttcagcggtgcccagttcaactga 874
| ||||||||||| ||||||||||| |||||||| ||||||||| |||||
Sbjct: 547 cgcgcggctggtcattcggccagaccttcagcggcgcccagttccactga 596
Score = 107 bits (54), Expect = 9e-022
Identities = 67/70 (95%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 295 ggcggcgctgagcacggcgctcttcaacaacggcctcagctgcggcgcctgcttcgaggt 354
|||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 9 ggcggccctgagc-cggcgctcttcaacaacggcctcagctgcggggcctgcttcgaggt 67
Query: 355 gcggtgcgac 364
||||||||||
Sbjct: 68 gcggtgcgac 77
>gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009B08f, mRNA sequence
Length = 651
Score = 319 bits (161), Expect = 1e-085
Identities = 324/376 (86%), Gaps = 2/376 (0%)
Strand = Plus / Plus
Query: 406 cgtggtgacggccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcgg 465
||||||||| |||||||||||||||||||||||| || | ||||||| ||||||
Sbjct: 107 cgtggtgactgccaccaacttctgcccgcccaacttcggcgagtcgtccgacgccggcgg 166
Query: 466 ctggtgcaacccgccgcgcgcccacttcgacatgtcgcagcccgtgttccagcgcatcgc 525
|||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 167 ctggtgcaaccctccccgcgcccacttcgacatgtcccagcccgtcttccagcgcatcgc 226
Query: 526 gctctacagggccggcattgttcccgtctcctaccgcagggttgcgtgcaacaagaaggg 585
||||||| | ||||||||||| |||||||||||||||||||| |||||| | ||||||||
Sbjct: 227 gctctaccgcgccggcattgtccccgtctcctaccgcagggtggcgtgccagaagaaggg 286
Query: 586 cggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtgaccaacgt 645
|||||| | ||||| ||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 287 cggcatcaggttcacgatcaatggccactcgtacttcaacctggtgctggtcaccaacgt 346
Query: 646 ggaaggcgccggcgacgtgcacgcggttgccgtgaaggccgac-cgctcccccgggtggc 704
|| ||| ||||||||||||||||||| |||| || | |||| ||||| | | |||||
Sbjct: 347 gggtggccccggcgacgtgcacgcggtgtccgtcaa-gtcgacgcgctcggcggcgtggc 405
Query: 705 aggccctgtcgcgcaactggggccagaactggcagagcaacacgctcctggacgggcagg 764
|||| || || ||||||||||| |||||||||||||||||| |||| || ||||||||||
Sbjct: 406 aggcgctctcacgcaactgggggcagaactggcagagcaacgcgctgctcgacgggcagg 465
Query: 765 ccctgtccttccgcgt 780
||| || ||||||||
Sbjct: 466 gcctctcgttccgcgt 481
Score = 103 bits (52), Expect = 1e-020
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 309 cggcgctcttcaacaacggcctcagctgcggcgcctgcttcgaggtgcggtgcgac 364
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 cggcgctcttcaacaacggcctcagctgcggggcctgcttcgaggtgcggtgcgac 56
>gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F17
5-PRIME, mRNA sequence
Length = 519
Score = 319 bits (161), Expect = 1e-085
Identities = 324/376 (86%), Gaps = 2/376 (0%)
Strand = Plus / Plus
Query: 406 cgtggtgacggccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcgg 465
||||||||| |||||||||||||||||||||||| || | ||||||| ||||||
Sbjct: 124 cgtggtgactgccaccaacttctgcccgcccaacttcggcgagtcgtccgacgccggcgg 183
Query: 466 ctggtgcaacccgccgcgcgcccacttcgacatgtcgcagcccgtgttccagcgcatcgc 525
|||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 184 ctggtgcaaccctccccgcgcccacttcgacatgtcccagcccgtcttccagcgcatcgc 243
Query: 526 gctctacagggccggcattgttcccgtctcctaccgcagggttgcgtgcaacaagaaggg 585
||||||| | ||||||||||| |||||||||||||||||||| |||||| | ||||||||
Sbjct: 244 gctctaccgcgccggcattgtccccgtctcctaccgcagggtggcgtgccagaagaaggg 303
Query: 586 cggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtgaccaacgt 645
|||||| | ||||| ||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 304 cggcatcaggttcacgatcaatggccactcgtacttcaacctggtgctggtcaccaacgt 363
Query: 646 ggaaggcgccggcgacgtgcacgcggttgccgtgaaggccgac-cgctcccccgggtggc 704
|| ||| ||||||||||||||||||| |||| || | |||| ||||| | | |||||
Sbjct: 364 gggtggccccggcgacgtgcacgcggtgtccgtcaa-gtcgacgcgctcggcggcgtggc 422
Query: 705 aggccctgtcgcgcaactggggccagaactggcagagcaacacgctcctggacgggcagg 764
|||| || || ||||||||||| |||||||||||||||||| |||| || ||||||||||
Sbjct: 423 aggcgctctcacgcaactgggggcagaactggcagagcaacgcgctgctcgacgggcagg 482
Query: 765 ccctgtccttccgcgt 780
||| || ||||||||
Sbjct: 483 gcctctcgttccgcgt 498
Score = 129 bits (65), Expect = 2e-028
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 292 cacggcggcgctgagcacggcgctcttcaacaacggcctcagctgcggcgcctgcttcga 351
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 cacggcggccctgagcacggcgctcttcaacaacggcctcagctgcggggcctgcttcga 60
Query: 352 ggtgcggtgcgac 364
|||||||||||||
Sbjct: 61 ggtgcggtgcgac 73
>gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52K01
5-PRIME, mRNA sequence
Length = 418
Score = 315 bits (159), Expect = 2e-084
Identities = 320/371 (86%), Gaps = 2/371 (0%)
Strand = Plus / Plus
Query: 452 tccgacgacggcggctggtgcaacccgccgcgcgcccacttcgacatgtcgcagcccgtg 511
||||||| |||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct: 47 tccgacgccggcggctggtgcaaccctccccgcgcccacttcgacatgtcccagcccgtc 106
Query: 512 ttccagcgcatcgcgctctacagggccggcattgttcccgtctcctaccgcagggttgcg 571
||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| |||
Sbjct: 107 ttccagcgcatcgcgctctaccgcgccggcattgtccccgtctcctaccgcagggtggcg 166
Query: 572 tgcaacaagaagggcggcatacgtttcaccatcaacggccactcctacttcaacctggta 631
||| | |||||||||||||| | ||||| ||||| |||||||| ||||||||||||||
Sbjct: 167 tgccagaagaagggcggcatcaggttcacgatcaatggccactcgtacttcaacctggtg 226
Query: 632 ctggtgaccaacgtggaaggcgccggcgacgtgcacgcggttgccgtgaaggccgac-cg 690
||||| |||||||||| ||| ||||||||||||||||||| |||| || | |||| ||
Sbjct: 227 ctggtcaccaacgtgggtggccccggcgacgtgcacgcggtgtccgtcaa-gtcgacgcg 285
Query: 691 ctcccccgggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacacgct 750
||| | | ||||||||| || || ||||||||||| |||||||||||||||||| ||||
Sbjct: 286 ctcggcggcgtggcaggcgctctcacgcaactgggggcagaactggcagagcaacgcgct 345
Query: 751 cctggacgggcaggccctgtccttccgcgtcaccaccagcgacggccgctccgtgctctc 810
|| |||||||||| ||| || |||||||| || | || |||||| |||||| ||||
Sbjct: 346 gctcgacgggcagggcctctcgttccgcgtgacggcaggcaacggccagtccgtggtctc 405
Query: 811 caacaacgccg 821
|||||||||||
Sbjct: 406 caacaacgccg 416
>gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 5', mRNA sequence
Length = 657
Score = 295 bits (149), Expect = 2e-078
Identities = 313/365 (85%), Gaps = 2/365 (0%)
Strand = Plus / Plus
Query: 511 gttccagcgcatcgcgctctacagggccggcattgttcccgtctcctaccgcagggttgc 570
|||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| ||
Sbjct: 1 gttccagcgcatcgcgctctaccgcgccggcattgtccccgtctcctaccgcagggtggc 60
Query: 571 gtgcaacaagaagggcggcatacgtttcaccatcaacggccactcctacttcaacctggt 630
|||| | |||||||||||||| | ||||| ||||| |||||||| ||||||||||||||
Sbjct: 61 gtgccagaagaagggcggcatcaggttcacgatcaatggccactcgtacttcaacctggt 120
Query: 631 actggtgaccaacgtggaaggcgccggcgacgtgcacgcggttgccgtgaaggccgac-c 689
||||| |||||||||| ||| ||||||||||||||||||| |||| || | |||| |
Sbjct: 121 gctggtcaccaacgtgggtggccccggcgacgtgcacgcggtgtccgtcaa-gtcgacgc 179
Query: 690 gctcccccgggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacacgc 749
|||| | | ||||||||| || || ||||||||||| |||||||||||||||||| |||
Sbjct: 180 gctcggcggcgtggcaggcgctctcacgcaactgggggcagaactggcagagcaacgcgc 239
Query: 750 tcctggacgggcaggccctgtccttccgcgtcaccaccagcgacggccgctccgtgctct 809
| || |||||||||| ||| || |||||||| || | || |||||| |||||| |||
Sbjct: 240 tgctcgacgggcagggcctctcgttccgcgtgacggcaggcaacggccagtccgtggtct 299
Query: 810 ccaacaacgccgccccccgcggctggtctttcggccagactttcagcggtgcccagttca 869
|||||||||||| ||| ||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 300 ccaacaacgccgtcccgcgcggctggtcattcggccagaccttcagcggcgcccagttcc 359
Query: 870 actga 874
|||||
Sbjct: 360 actga 364
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 937 cccgattggagcctgccgagaggcgccatggttttatg 974
|||||||||||| ||| | || ||||||||||||||||
Sbjct: 441 cccgattggagcgtgctgggaagcgccatggttttatg 478
>gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36l22 5', mRNA sequence
Length = 639
Score = 295 bits (149), Expect = 2e-078
Identities = 313/365 (85%), Gaps = 2/365 (0%)
Strand = Plus / Plus
Query: 511 gttccagcgcatcgcgctctacagggccggcattgttcccgtctcctaccgcagggttgc 570
|||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| ||
Sbjct: 1 gttccagcgcatcgcgctctaccgcgccggcattgtccccgtctcctaccgcagggtggc 60
Query: 571 gtgcaacaagaagggcggcatacgtttcaccatcaacggccactcctacttcaacctggt 630
|||| | |||||||||||||| | ||||| ||||| |||||||| ||||||||||||||
Sbjct: 61 gtgccagaagaagggcggcatcaggttcacgatcaatggccactcgtacttcaacctggt 120
Query: 631 actggtgaccaacgtggaaggcgccggcgacgtgcacgcggttgccgtgaaggccgac-c 689
||||| |||||||||| ||| ||||||||||||||||||| |||| || | |||| |
Sbjct: 121 gctggtcaccaacgtgggtggccccggcgacgtgcacgcggtgtccgtcaa-gtcgacgc 179
Query: 690 gctcccccgggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacacgc 749
|||| | | ||||||||| || || ||||||||||| |||||||||||||||||| |||
Sbjct: 180 gctcggcggcgtggcaggcgctctcacgcaactgggggcagaactggcagagcaacgcgc 239
Query: 750 tcctggacgggcaggccctgtccttccgcgtcaccaccagcgacggccgctccgtgctct 809
| || |||||||||| ||| || |||||||| || | || |||||| |||||| |||
Sbjct: 240 tgctcgacgggcagggcctctcgttccgcgtgacggcaggcaacggccagtccgtggtct 299
Query: 810 ccaacaacgccgccccccgcggctggtctttcggccagactttcagcggtgcccagttca 869
|||||||||||| ||| ||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 300 ccaacaacgccgtcccgcgcggctggtcattcggccagaccttcagcggcgcccagttcc 359
Query: 870 actga 874
|||||
Sbjct: 360 actga 364
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 937 cccgattggagcctgccgagaggcgccatggttttatg 974
|||||||||||| ||| | || ||||||||||||||||
Sbjct: 441 cccgattggagcgtgctgggaagcgccatggttttatg 478
>gb|BQ660413.1|BQ660413 HI02G15u HI Hordeum vulgare subsp. vulgare cDNA clone HI02G15
3-PRIME, mRNA sequence
Length = 383
Score = 268 bits (135), Expect = 4e-070
Identities = 189/207 (91%)
Strand = Plus / Plus
Query: 158 cacggccacgcaccgctcggaggtggcgcgtggtcctcggctcacgccaccttctacggc 217
|||| |||||| |||||||| |||||||| ||| | || |||||||||||||||||||||
Sbjct: 176 cacgcccacgcgccgctcggcggtggcgcctgggcgtccgctcacgccaccttctacggc 235
Query: 218 ggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctctacagccag 277
||||| || || ||||||||||||||||||||||| || ||||| |||||||||||| |
Sbjct: 236 ggcggtgacgcttccggcaccatgggcggggcgtgcggctacgggaacctctacagcacg 295
Query: 278 gggtacggcaccaacacggcggcgctgagcacggcgctcttcaacaacggcctcagctgc 337
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 296 gggtacggctccaacacggcggccctgagcacggcgctcttcaacaacggcctcagctgc 355
Query: 338 ggcgcctgcttcgaggtgcggtgcgac 364
|| ||||||||||||||||||||||||
Sbjct: 356 ggggcctgcttcgaggtgcggtgcgac 382
>gb|BG300056.1|BG300056 HVSMEb0011D11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0011D11f, mRNA sequence
Length = 521
Score = 260 bits (131), Expect = 1e-067
Identities = 188/207 (90%)
Strand = Plus / Plus
Query: 158 cacggccacgcaccgctcggaggtggcgcgtggtcctcggctcacgccaccttctacggc 217
|||| |||||| ||| |||| |||||||| ||| | || |||||||||||||||||||||
Sbjct: 196 cacgcccacgcgccgttcggcggtggcgcctgggcgtccgctcacgccaccttctacggc 255
Query: 218 ggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctctacagccag 277
||||| || || ||||||||||||||||||||||| || ||||| |||||||||||| |
Sbjct: 256 ggcggtgacgcttccggcaccatgggcggggcgtgcggctacgggaacctctacagcacg 315
Query: 278 gggtacggcaccaacacggcggcgctgagcacggcgctcttcaacaacggcctcagctgc 337
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 316 gggtacggctccaacacggcggccctgagcacggcgctcttcaacaacggcctcagctgc 375
Query: 338 ggcgcctgcttcgaggtgcggtgcgac 364
|| ||||||||||||||||||||||||
Sbjct: 376 ggggcctgcttcgaggtgcggtgcgac 402
Score = 60.0 bits (30), Expect = 2e-007
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 406 cgtggtgacggccaccaacttctgcccgcccaac 439
||||||||| ||||||||||||||||||||||||
Sbjct: 453 cgtggtgactgccaccaacttctgcccgcccaac 486
>gb|BF629000.2|BF629000 HVSMEb0009I04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009I04f, mRNA sequence
Length = 817
Score = 252 bits (127), Expect = 3e-065
Identities = 187/207 (90%)
Strand = Plus / Plus
Query: 158 cacggccacgcaccgctcggaggtggcgcgtggtcctcggctcacgccaccttctacggc 217
|||| |||||| ||| |||| |||||||| ||| | || |||||||||||||||||||||
Sbjct: 190 cacgcccacgcgccgatcggcggtggcgcctgggcgtccgctcacgccaccttctacggc 249
Query: 218 ggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctctacagccag 277
||||| || || ||||||||||||||||||||||| || ||||| |||||||||||| |
Sbjct: 250 ggcggtgacgcttccggcaccatgggcggggcgtgcggctacgggaacctctacagcacg 309
Query: 278 gggtacggcaccaacacggcggcgctgagcacggcgctcttcaacaacggcctcagctgc 337
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 310 gggtacggctccaacacggcggccctgagcacggcgctcttcaacaacggcctcagctgc 369
Query: 338 ggcgcctgcttcgaggtgcggtgcgac 364
|| ||||||||| ||||||||||||||
Sbjct: 370 ggggcctgcttcaaggtgcggtgcgac 396
Score = 60.0 bits (30), Expect = 2e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 513 tccagcgcatcgcgctctacagggccggcattgttcccgtctcctaccgcaggg 566
|||| ||||||| |||||| ||||||||||||||||| |||||||||| ||||
Sbjct: 553 tccaacgcatcgtgctctaacgggccggcattgttcccctctcctaccggaggg 606
Score = 56.0 bits (28), Expect = 3e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 392 ctgccgggctccgtcgtggtgacggccaccaacttctgcccgcccaac 439
||||| |||||| ||||| ||| ||||||||||||||||||||||||
Sbjct: 433 ctgcccggctccaccgtggagactgccaccaacttctgcccgcccaac 480
>gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011F20f, mRNA sequence
Length = 825
Score = 234 bits (118), Expect = 6e-060
Identities = 242/284 (85%)
Strand = Plus / Plus
Query: 379 cggccgctcgtgtctgccgggctccgtcgtggtgacggccaccaacttctgcccgcccaa 438
|||| ||||||| | |||||| ||| || ||||||| |||||||||||||||||||||||
Sbjct: 365 cggcagctcgtgccggccggggtccatcatggtgaccgccaccaacttctgcccgcccaa 424
Query: 439 caacgcgctcccntccgacgacggcggctggtgcaacccgccgcgcgcccacttcgacat 498
| ||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 425 ctacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccccacttcgacat 484
Query: 499 gtcgcagcccgtgttccagcgcatcgcgctctacagggccggcattgttcccgtctccta 558
| | |||| | |||| | |||||||| ||| | |||||||| || |||||||||||
Sbjct: 485 ggccgagccggccttcctccacatcgcgcagtaccgcgccggcatcgtacccgtctccta 544
Query: 559 ccgcagggttgcgtgcaacaagaagggcggcatacgtttcaccatcaacggccactccta 618
| | ||||| ||||| |||||||| ||||| || |||||||||||||||||||||||
Sbjct: 545 cagaagggtgccgtgcgtgaagaaggggggcatccggttcaccatcaacggccactccta 604
Query: 619 cttcaacctggtactggtgaccaacgtggaaggcgccggcgacg 662
|||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 605 cttcaacctggtgctggtgaccaacgtggncggcgccggcgacg 648
Score = 155 bits (78), Expect = 4e-036
Identities = 114/126 (90%)
Strand = Plus / Plus
Query: 203 gccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggc 262
||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||
Sbjct: 198 gccaccttctacggcggcggcgacgcctccggcacgatgggcggggcgtgcgggtacggt 257
Query: 263 aacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttcaac 322
||||| |||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 258 aacctgtacagcactgggtacggcacgaacacggcggcgctgagcacggcgctgttcaac 317
Query: 323 aacggc 328
|||||
Sbjct: 318 gacggc 323
Score = 56.0 bits (28), Expect = 3e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 696 ccgggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacac 747
|||| ||||| ||| |||| |||||||||||| ||||||||||||||||||
Sbjct: 679 ccggctggcaagccatgtcccgcaactggggcatgaactggcagagcaacac 730
>gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. vulgare cDNA clone HS05F12
5-PRIME, mRNA sequence
Length = 520
Score = 232 bits (117), Expect = 2e-059
Identities = 242/284 (85%)
Strand = Plus / Plus
Query: 379 cggccgctcgtgtctgccgggctccgtcgtggtgacggccaccaacttctgcccgcccaa 438
|||| ||||||| | |||||| ||| || ||||||| |||||||||||||||||||||||
Sbjct: 147 cggcagctcgtgccggccggggtccatcatggtgaccgccaccaacttctgcccgcccaa 206
Query: 439 caacgcgctcccntccgacgacggcggctggtgcaacccgccgcgcgcccacttcgacat 498
| ||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 207 ctacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccccacttcgacat 266
Query: 499 gtcgcagcccgtgttccagcgcatcgcgctctacagggccggcattgttcccgtctccta 558
| | |||| | |||| | |||||||| ||| | |||||||| || |||||||||||
Sbjct: 267 ggccgagccggccttcctccacatcgcgcagtaccgcgccggcatcgtacccgtctccta 326
Query: 559 ccgcagggttgcgtgcaacaagaagggcggcatacgtttcaccatcaacggccactccta 618
| | ||||| ||||| |||||||| ||||| || |||||||||||||||||||||||
Sbjct: 327 cagaagggtgccgtgcgtgaagaaggggggcatccggttcaccatcaacggccactccta 386
Query: 619 cttcaacctggtactggtgaccaacgtggaaggcgccggcgacg 662
|||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 387 cttcaacctggtgctggtgaccaacgtggccggcgccggcgacg 430
Score = 111 bits (56), Expect = 6e-023
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 233 ggcaccatgggcggggcgtgtgggtacggcaacctctacagccaggggtacggcaccaac 292
||||| |||||||||||||| |||||||| ||||| |||||| ||||||||||| |||
Sbjct: 10 ggcacgatgggcggggcgtgcgggtacggtaacctgtacagcactgggtacggcacgaac 69
Query: 293 acggcggcgctgagcacggcgctcttcaacaacggc 328
||||||||||||||||||||||| |||||| |||||
Sbjct: 70 acggcggcgctgagcacggcgctgttcaacgacggc 105
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 696 ccgggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacac 747
|||| ||||||||| |||| |||||||||||| ||||||||||||||||||
Sbjct: 461 ccggctggcaggccatgtcccgcaactggggcatgaactggcagagcaacac 512
>gb|BU999110.1|BU999110 HI13E18r HI Hordeum vulgare subsp. vulgare cDNA clone HI13E18
5-PRIME, mRNA sequence
Length = 331
Score = 204 bits (103), Expect = 5e-051
Identities = 154/171 (90%)
Strand = Plus / Plus
Query: 158 cacggccacgcaccgctcggaggtggcgcgtggtcctcggctcacgccaccttctacggc 217
|||| |||||| |||||||| |||||||| ||| | || |||||||||||||||||||||
Sbjct: 161 cacgcccacgcgccgctcggcggtggcgcctgggcgtccgctcacgccaccttctacggc 220
Query: 218 ggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctctacagccag 277
||||| || || ||||||||||||||||||||||| || ||||| |||||||||||| |
Sbjct: 221 ggcggtgacgcttccggcaccatgggcggggcgtgcggctacgggaacctctacagcacg 280
Query: 278 gggtacggcaccaacacggcggcgctgagcacggcgctcttcaacaacggc 328
||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 281 gggtacggctccaacacggcggccctgagcacggcgctcttcaacaacggc 331
>gb|AV921430.1|AV921430 AV921430 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 3', mRNA sequence
Length = 710
Score = 198 bits (100), Expect = 3e-049
Identities = 237/280 (84%), Gaps = 2/280 (0%)
Strand = Plus / Minus
Query: 596 ttcaccatcaacggccactcctacttcaacctggtactggtgaccaacgtggaaggcgcc 655
||||| ||||| |||||||| |||||||||||||| ||||| |||||||||| ||| ||
Sbjct: 701 ttcacgatcaatggccactcgtacttcaacctggtgctggtcaccaacgtgggtggcccc 642
Query: 656 ggcgacgtgcacgcggttgccgtgaaggccgac-cgctcccccgggtggcaggccctgtc 714
||||||||||||||||| |||| ||| | ||| ||||| | | ||||||||| || ||
Sbjct: 641 ggcgacgtgcacgcggtgtccgtcaagtc-gacgcgctcggcggcgtggcaggcgctctc 583
Query: 715 gcgcaactggggccagaactggcagagcaacacgctcctggacgggcaggccctgtcctt 774
||||||||||| |||||||||||||||||| |||| || |||||||||| ||| || ||
Sbjct: 582 acgcaactgggggcagaactggcagagcaacgcgctgctcgacgggcagggcctctcgtt 523
Query: 775 ccgcgtcaccaccagcgacggccgctccgtgctctccaacaacgccgccccccgcggctg 834
|||||| || | || |||||| |||||| ||||||||||||||| ||| ||||||||
Sbjct: 522 ccgcgtgacggcaggcaacggccagtccgtggtctccaacaacgccgtcccgcgcggctg 463
Query: 835 gtctttcggccagactttcagcggtgcccagttcaactga 874
||| ||||||||||| |||||||| ||||||||| |||||
Sbjct: 462 gtcattcggccagaccttcagcggcgcccagttccactga 423
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 937 cccgattggagcctgccgagaggcgccatggttttatg 974
|||||||||||| ||| | || ||||||||||||||||
Sbjct: 346 cccgattggagcgtgctgggaagcgccatggttttatg 309
>gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002O08f, mRNA sequence
Length = 844
Score = 192 bits (97), Expect = 2e-047
Identities = 237/284 (83%)
Strand = Plus / Plus
Query: 379 cggccgctcgtgtctgccgggctccgtcgtggtgacggccaccaacttctgcccgcccaa 438
|||| ||||||| | |||||| ||| || ||||||| |||||||||||||||||||||||
Sbjct: 365 cggcagctcgtgccggccggggtccatcatggtgaccgccaccaacttctgcccgcccaa 424
Query: 439 caacgcgctcccntccgacgacggcggctggtgcaacccgccgcgcgcccacttcgacat 498
| ||| ||||| ||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 425 ctacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccccacttagacat 484
Query: 499 gtcgcagcccgtgttccagcgcatcgcgctctacagggccggcattgttcccgtctccta 558
| | |||| | |||| | |||||||| ||| |||||||||| || ||| |||||||
Sbjct: 485 ggccgagccggccttcctccacatcgcgcagtaccgggccggcatcgtacccctctccta 544
Query: 559 ccgcagggttgcgtgcaacaagaagggcggcatacgtttcaccatcaacggccactccta 618
| | ||||| ||||| ||||| || ||||| || |||||||||||||||||||||||
Sbjct: 545 cagaagggtgccgtgcgtgaagaaagggggcatccggttcaccatcaacggccactccta 604
Query: 619 cttcaacctggtactggtgaccaacgtggaaggcgccggcgacg 662
||| ||||||| |||||||||||||||| |||||||| ||||
Sbjct: 605 cttaaacctggggctggtgaccaacgtggccggcgccggggacg 648
Score = 155 bits (78), Expect = 4e-036
Identities = 114/126 (90%)
Strand = Plus / Plus
Query: 203 gccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggc 262
||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||
Sbjct: 198 gccaccttctacggcggcggcgacgcctccggcacgatgggcggggcgtgcgggtacggt 257
Query: 263 aacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttcaac 322
||||| |||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 258 aacctgtacagcactgggtacggcacgaacacggcggcgctgagcacggcgctgttcaac 317
Query: 323 aacggc 328
|||||
Sbjct: 318 gacggc 323
>gb|BG343293.2|BG343293 HVSMEg0005F10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005F10f, mRNA sequence
Length = 947
Score = 172 bits (87), Expect = 2e-041
Identities = 215/255 (84%), Gaps = 2/255 (0%)
Strand = Plus / Plus
Query: 621 tcaacctggtactggtgaccaacgtggaaggcgccggcgacgtgcacgcggttgccgtga 680
|||||||||| ||||| |||||||||| ||| ||||||||||||||||||| |||| |
Sbjct: 1 tcaacctggtgctggtcaccaacgtgggtggccccggcgacgtgcacgcggtgtccgtca 60
Query: 681 aggccgac-cgctcccccgggtggcaggccctgtcgcgcaactggggccagaactggcag 739
|| | ||| ||||| | | ||||||||| || || ||||||||||| ||||||||||||
Sbjct: 61 agtc-gacgcgctcggcggcgtggcaggcgctctcacgcaactgggggcagaactggcag 119
Query: 740 agcaacacgctcctggacgggcaggccctgtccttccgcgtcaccaccagcgacggccgc 799
|||||| |||| || |||||||||| ||| || |||||||| || | || ||||||
Sbjct: 120 agcaacgcgctgctcgacgggcagggcctctcgttccgcgtgacggcaggcaacggccag 179
Query: 800 tccgtgctctccaacaacgccgccccccgcggctggtctttcggccagactttcagcggt 859
|||||| ||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||
Sbjct: 180 tccgtggtctccaacaacgccgtcccgcgcggctggtcattcggccagaccttcagcggc 239
Query: 860 gcccagttcaactga 874
||||||||| |||||
Sbjct: 240 gcccagttccactga 254
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 937 cccgattggagcctgccgagaggcgccatggttttatg 974
|||||||||||| ||| | || ||||||||||||||||
Sbjct: 331 cccgattggagcgtgctgggaagcgccatggttttatg 368
>gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023B18f, mRNA sequence
Length = 570
Score = 161 bits (81), Expect = 7e-038
Identities = 117/129 (90%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 167 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 226
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttc 319
|| ||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 227 gggaacctgtacagcacgggttacggcacgaacacggcggcgctgagcacggcgctgttc 286
Query: 320 aacaacggc 328
|||||||||
Sbjct: 287 aacaacggc 295
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 416 gccaccaacttctgcccgcccaacaacgcgct 447
||||||||| | |||||||||||| |||||||
Sbjct: 368 gccaccaacctttgcccgcccaactacgcgct 399
>gb|BI951147.1|BI951147 HVSMEl0024K11f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0024K11f, mRNA sequence
Length = 847
Score = 155 bits (78), Expect = 4e-036
Identities = 114/126 (90%)
Strand = Plus / Plus
Query: 203 gccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggc 262
||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||
Sbjct: 200 gccaccttctacggcggcggcgacgcctccggcacgatgggcggggcgtgcgggtacggt 259
Query: 263 aacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttcaac 322
||||| |||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 260 aacctgtacagcactgggtacggcacgaacacggcggcgctgagcacggcgctgttcaac 319
Query: 323 aacggc 328
|||||
Sbjct: 320 gacggc 325
>gb|BI958257.1|BI958257 HVSMEn0014B22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014B22f, mRNA sequence
Length = 660
Score = 155 bits (78), Expect = 4e-036
Identities = 114/126 (90%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 162 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 221
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttc 319
|| ||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 222 gggaacctgtacagcacgggttacggcacgaacacggcggcgctgagcacggcgctgttc 281
Query: 320 aacaac 325
||||||
Sbjct: 282 aacaac 287
>gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0015J01f, mRNA sequence
Length = 563
Score = 155 bits (78), Expect = 4e-036
Identities = 114/126 (90%)
Strand = Plus / Plus
Query: 203 gccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggc 262
||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||
Sbjct: 198 gccaccttctacggcggcggcgacgcctccggcacgatgggcggggcgtgcgggtacggt 257
Query: 263 aacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttcaac 322
||||| |||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 258 aacctgtacagcactgggtacggcacgaacacggcggcgctgagcacggcgctgttcaac 317
Query: 323 aacggc 328
|||||
Sbjct: 318 gacggc 323
Score = 109 bits (55), Expect = 2e-022
Identities = 104/121 (85%)
Strand = Plus / Plus
Query: 379 cggccgctcgtgtctgccgggctccgtcgtggtgacggccaccaacttctgcccgcccaa 438
|||| ||||||| | | |||| ||| || ||||||| |||||||||||||||||||||||
Sbjct: 365 cggcagctcgtgccgggcggggtccatcatggtgaccgccaccaacttctgcccgcccaa 424
Query: 439 caacgcgctcccntccgacgacggcggctggtgcaacccgccgcgcgcccacttcgacat 498
| ||| ||| || |||||||||||| |||||||||||||||||| ||||||| |||||
Sbjct: 425 ctacgggctncccagcgacgacggcgggtggtgcaacccgccgcgcccccactttgacat 484
Query: 499 g 499
|
Sbjct: 485 g 485
>gb|CA002659.1|CA002659 HS08C15r HS Hordeum vulgare subsp. vulgare cDNA clone HS08C15
5-PRIME, mRNA sequence
Length = 364
Score = 155 bits (78), Expect = 4e-036
Identities = 114/126 (90%)
Strand = Plus / Plus
Query: 203 gccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggc 262
||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||
Sbjct: 210 gccaccttctacggcggcggcgacgcctccggcacgatgggcggggcgtgcgggtacggt 269
Query: 263 aacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttcaac 322
||||| |||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 270 aacctgtacagcactgggtacggcacgaacacggcggcgctgagcacggcgctgttcaac 329
Query: 323 aacggc 328
|||||
Sbjct: 330 gacggc 335
>gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43I17
5-PRIME, mRNA sequence
Length = 522
Score = 155 bits (78), Expect = 4e-036
Identities = 114/126 (90%)
Strand = Plus / Plus
Query: 203 gccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggc 262
||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||
Sbjct: 177 gccaccttctacggcggcggcgacgcctccggcacgatgggcggggcgtgcgggtacggt 236
Query: 263 aacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttcaac 322
||||| |||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 237 aacctgtacagcactgggtacggcacgaacacggcggcgctgagcacggcgctgttcaac 296
Query: 323 aacggc 328
|||||
Sbjct: 297 gacggc 302
Score = 131 bits (66), Expect = 6e-029
Identities = 107/121 (88%)
Strand = Plus / Plus
Query: 379 cggccgctcgtgtctgccgggctccgtcgtggtgacggccaccaacttctgcccgcccaa 438
|||| ||||||| | |||||| ||| || ||||||| |||||||||||||||||||||||
Sbjct: 344 cggcagctcgtgccggccggggtccatcatggtgaccgccaccaacttctgcccgcccaa 403
Query: 439 caacgcgctcccntccgacgacggcggctggtgcaacccgccgcgcgcccacttcgacat 498
| ||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 404 ctacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccccacttcgacat 463
Query: 499 g 499
|
Sbjct: 464 g 464
>gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12T 5', mRNA sequence
Length = 700
Score = 153 bits (77), Expect = 2e-035
Identities = 116/129 (89%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 64 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 123
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttc 319
|| ||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 124 gggaacctgtacagcacgggttacggcacgaacacggcggcgctgagcacggcgctgttc 183
Query: 320 aacaacggc 328
||| |||||
Sbjct: 184 aacgacggc 192
Score = 113 bits (57), Expect = 1e-023
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 578 aagaagggcggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtg 637
||||||||||| || | ||||||||||||||||||||||||||||||||||| || |||
Sbjct: 429 aagaagggcgggatgaggttcaccatcaacggccactcctacttcaacctggtgcttgtg 488
Query: 638 accaacgtggaaggcgccggcgacgtgca 666
|||||||||| |||||||||||||||||
Sbjct: 489 accaacgtggccggcgccggcgacgtgca 517
Score = 91.7 bits (46), Expect = 5e-017
Identities = 76/85 (89%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 416 gccaccaacttctgcccgcccaacaacgcgctcccntccgacgacg-gcggctggtgcaa 474
||||||||| | |||||||||||| ||||||| || ||||||| |||||||||||||
Sbjct: 265 gccaccaacctttgcccgcccaactacgcgctgcccaacgacgaccagcggctggtgcaa 324
Query: 475 cccgccgcgcgcccacttcgacatg 499
|||||||||||||||||||||||||
Sbjct: 325 cccgccgcgcgcccacttcgacatg 349
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 723 ggggccagaactggcagagcaac 745
|||||||||||||||||||||||
Sbjct: 574 ggggccagaactggcagagcaac 596
>gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018F04f, mRNA sequence
Length = 773
Score = 153 bits (77), Expect = 2e-035
Identities = 116/129 (89%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 139 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 198
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttc 319
|| ||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 199 gggaacctgtacagcacgggttacggcacgaacacggcggcgctgagcacggcgctgttc 258
Query: 320 aacaacggc 328
||| |||||
Sbjct: 259 aacgacggc 267
Score = 113 bits (57), Expect = 1e-023
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 578 aagaagggcggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtg 637
|||||||| || ||| | |||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 502 aagaagggagggataaggttcaccattaacggccactcctacttcaacctggtgctggtg 561
Query: 638 accaacgtggaaggcgccggcgacgtgca 666
|||||||||| |||||||||||||||||
Sbjct: 562 accaacgtggccggcgccggcgacgtgca 590
Score = 91.7 bits (46), Expect = 5e-017
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 419 accaacttctgcccgcccaacaacgcgctcccntccgacgacggcggctggtgcaacccg 478
|||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||
Sbjct: 343 accaacctctgcccgcccaactacgcgctgcccaacgacgacggcggctggtgcaaccca 402
Query: 479 ccgcgcgcccacttcgacatg 499
|||||||| |||| |||||||
Sbjct: 403 ccgcgcgcacactgcgacatg 423
>gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011O18f, mRNA sequence
Length = 539
Score = 153 bits (77), Expect = 2e-035
Identities = 116/129 (89%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 169 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 228
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttc 319
|| ||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 229 gggaacctgtacagcacgggttacggcacgaacacggcggcgctgagcacggcgctgttc 288
Query: 320 aacaacggc 328
||| |||||
Sbjct: 289 aacgacggc 297
Score = 97.6 bits (49), Expect = 9e-019
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 416 gccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggctggtgcaac 475
||||||||| | |||||| ||||| ||||||| | ||||||||||||||||||||||
Sbjct: 370 gccaccaacctttgcccggccaactacgcgctggccaacgacgacggcggctggtgcaac 429
Query: 476 ccgccgcgcgcccacttcgacatg 499
||||||||||||||||||||||||
Sbjct: 430 ccgccgcgcgcccacttcgacatg 453
>gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004I04f, mRNA sequence
Length = 894
Score = 153 bits (77), Expect = 2e-035
Identities = 116/129 (89%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 174 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 233
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttc 319
|| ||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 234 gggaacctgtacagcacgggttacggcacgaacacggcggcgctgagcacggcgctgttc 293
Query: 320 aacaacggc 328
||| |||||
Sbjct: 294 aacgacggc 302
>gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009F06f, mRNA sequence
Length = 665
Score = 153 bits (77), Expect = 2e-035
Identities = 116/129 (89%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 26 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 85
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttc 319
|| ||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 86 gggaacctgtacagcacgggttacggcacgaacacggcggcgctgagcacggcgctgttc 145
Query: 320 aacaacggc 328
||| |||||
Sbjct: 146 aacgacggc 154
Score = 107 bits (54), Expect = 9e-022
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 416 gccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggctggtgcaac 475
||||||||| | |||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct: 227 gccaccaacctttgcccgcccaactacgcgctgcccaacgacgacggcggctggtgcaac 286
Query: 476 ccgccgcgcgcccacttcgacatg 499
|||||||||||||||||| |||||
Sbjct: 287 ccgccgcgcgcccacttcnacatg 310
>gb|BI957889.1|BI957889 HVSMEn0011P08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0011P08f, mRNA sequence
Length = 1124
Score = 153 bits (77), Expect = 2e-035
Identities = 116/129 (89%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 179 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 238
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttc 319
|| ||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 239 gggaacctgtacagcacgggttacggcacgaacacggcggcgctgagcacggcgctgttc 298
Query: 320 aacaacggc 328
||| |||||
Sbjct: 299 aacgacggc 307
>gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005H19f, mRNA sequence
Length = 904
Score = 153 bits (77), Expect = 2e-035
Identities = 116/129 (89%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 188 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 247
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttc 319
|| ||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 248 gggaacctgtacagcacgggttacggcacgaacacggcggcgctgagcacggcgctgttc 307
Query: 320 aacaacggc 328
||| |||||
Sbjct: 308 aacgacggc 316
Score = 109 bits (55), Expect = 2e-022
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 418 caccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggctggtgcaaccc 477
||||||| | |||||||||||| ||||||| || ||||||||||||||||||||||||
Sbjct: 391 caccaacctttgcccgcccaactacgcgctgcccaacgacgacggcggctggtgcaaccc 450
Query: 478 gccgcgcgcccacttcgacatg 499
||||||||||||||||||||||
Sbjct: 451 gccgcgcgcccacttcgacatg 472
Score = 60.0 bits (30), Expect = 2e-007
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 596 ttcaccatcaacggccactcctacttcaacctggtactggtgacca 641
|||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct: 569 ttcaccatcaacgggcactcctactt-aacctggtgctggtgacca 613
>gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014H08f, mRNA sequence
Length = 634
Score = 153 bits (77), Expect = 2e-035
Identities = 116/129 (89%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 162 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 221
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttc 319
|| ||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 222 gggaacctgtacagcacgggttacggcacgaacacggcggcgctgagcacggcgctgttc 281
Query: 320 aacaacggc 328
||| |||||
Sbjct: 282 aacgacggc 290
Score = 113 bits (57), Expect = 1e-023
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 416 gccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggctggtgcaac 475
||||||||| | |||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct: 363 gccaccaacctttgcccgcccaactacgcgctgcccaacgacgacggcggctggtgcaac 422
Query: 476 ccgccgcgcgcccacttcgacatg 499
||||||||||||||||||||||||
Sbjct: 423 ccgccgcgcgcccacttcgacatg 446
Score = 105 bits (53), Expect = 4e-021
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 578 aagaagggcggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtg 637
||||||||||| || | |||||||||||||||||||||||||| |||||||| || |||
Sbjct: 525 aagaagggcgggatgaggttcaccatcaacggccactcctactttaacctggtgcttgtg 584
Query: 638 accaacgtggaaggcgccggcgacgtgca 666
|||||||||| |||||||||||||||||
Sbjct: 585 accaacgtggccggcgccggcgacgtgca 613
>gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. vulgare cDNA clone HU02C09
3-PRIME, mRNA sequence
Length = 492
Score = 153 bits (77), Expect = 2e-035
Identities = 116/129 (89%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 166 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 225
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttc 319
|| ||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 226 gggaacctgtacagcacgggttacggcacgaacacggcggcgctgagcacggcgctgttc 285
Query: 320 aacaacggc 328
||| |||||
Sbjct: 286 aacgacggc 294
Score = 113 bits (57), Expect = 1e-023
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 416 gccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggctggtgcaac 475
||||||||| | |||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct: 367 gccaccaacctttgcccgcccaactacgcgctgcccaacgacgacggcggctggtgcaac 426
Query: 476 ccgccgcgcgcccacttcgacatg 499
||||||||||||||||||||||||
Sbjct: 427 ccgccgcgcgcccacttcgacatg 450
>gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_H11 5', mRNA sequence
Length = 590
Score = 153 bits (77), Expect = 2e-035
Identities = 116/129 (89%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 140 cacgccaccttctacggcggcggcgaggcgtccggcacaatgggcggcgcgtgcggctac 199
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttc 319
|| ||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 200 gggaacctgtacagcacgggttacggcacgaacacggcggcgctgagcacggcgctgttc 259
Query: 320 aacaacggc 328
||| |||||
Sbjct: 260 aacgacggc 268
Score = 111 bits (56), Expect = 6e-023
Identities = 80/88 (90%)
Strand = Plus / Plus
Query: 578 aagaagggcggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtg 637
|||||||| || ||| | |||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 503 aagaagggagggataaggttcaccattaacggccactcctacttcaacctggtgctggtg 562
Query: 638 accaacgtggaaggcgccggcgacgtgc 665
|||||||||| ||||||||||||||||
Sbjct: 563 accaacgtggccggcgccggcgacgtgc 590
Score = 99.6 bits (50), Expect = 2e-019
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 419 accaacttctgcccgcccaacaacgcgctcccntccgacgacggcggctggtgcaacccg 478
|||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||
Sbjct: 344 accaacctctgcccgcccaactacgcgctgcccaacgacgacggcggctggtgcaaccca 403
Query: 479 ccgcgcgcccacttcgacatg 499
|||||||| ||||||||||||
Sbjct: 404 ccgcgcgcacacttcgacatg 424
>gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. vulgare cDNA clone HU14J18
5-PRIME, mRNA sequence
Length = 465
Score = 153 bits (77), Expect = 2e-035
Identities = 116/129 (89%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 177 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 236
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttc 319
|| ||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 237 gggaacctgtacagcacgggttacggcacgaacacggcggcgctgagcacggcgctgttc 296
Query: 320 aacaacggc 328
||| |||||
Sbjct: 297 aacgacggc 305
Score = 113 bits (57), Expect = 1e-023
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 416 gccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggctggtgcaac 475
||||||||| | |||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct: 378 gccaccaacctttgcccgcccaactacgcgctgcccaacgacgacggcggctggtgcaac 437
Query: 476 ccgccgcgcgcccacttcgacatg 499
||||||||||||||||||||||||
Sbjct: 438 ccgccgcgcgcccacttcgacatg 461
>gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010L18f, mRNA sequence
Length = 677
Score = 149 bits (75), Expect = 3e-034
Identities = 111/123 (90%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 181 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 240
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttc 319
|| ||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 241 gggaacctgtacagcacgggttacggcacgaacacggcggcgctgagcacggcgctgttc 300
Query: 320 aac 322
|||
Sbjct: 301 aac 303
Score = 54.0 bits (27), Expect = 1e-005
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 454 cgacgacggcggctggtgcaa-cccgccgcgcgcccacttcgacatg 499
|||||||||||| |||||||| ||| || ||||||||||||||||||
Sbjct: 420 cgacgacggcgggtggtgcaacccccccccgcgcccacttcgacatg 466
>gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015J17f, mRNA sequence
Length = 852
Score = 149 bits (75), Expect = 3e-034
Identities = 141/163 (86%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
||||||||||||||||||||| |||| || ||||||||||||||||||||||| ||||||
Sbjct: 193 cacgccaccttctacggcggcagcgacgcctccggcaccatgggcggggcgtgcgggtac 252
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttc 319
|| ||||| ||||||||||||||||| || | |||||||||||||||||||| |||
Sbjct: 253 gggaacctgtacagccaggggtacggggtgaataacgcggcgctgagcacggcgctgttc 312
Query: 320 aacaacggcctcagctgcggcgcctgcttcgaggtgcggtgcg 362
||| | || | ||||||||||| ||||||||| | |||||||
Sbjct: 313 aacgaggggcagagctgcggcgcgtgcttcgagatccggtgcg 355
Score = 123 bits (62), Expect = 2e-026
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 416 gccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggctggtgcaac 475
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 412 gccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgcaac 471
Query: 476 ccgccgcgcgcccacttcgac 496
|| || ||| |||||||||||
Sbjct: 472 cctccccgcccccacttcgac 492
>gb|CA020777.1|CA020777 HZ37K23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ37K23
5-PRIME, mRNA sequence
Length = 582
Score = 149 bits (75), Expect = 3e-034
Identities = 150/175 (85%)
Strand = Plus / Plus
Query: 700 gtggcaggccctgtcgcgcaactggggccagaactggcagagcaacacgctcctggacgg 759
||||||||| || || ||||||||||| |||||||||||||||||| |||| || |||||
Sbjct: 57 gtggcaggcgctctcacgcaactgggggcagaactggcagagcaacgcgctgctcgacgg 116
Query: 760 gcaggccctgtccttccgcgtcaccaccagcgacggccgctccgtgctctccaacaacgc 819
||||| ||| || |||||||| || | || |||||| |||||| |||||||||||||
Sbjct: 117 gcagggcctctcgttccgcgtgacggcaggcaacggccagtccgtggtctccaacaacgc 176
Query: 820 cgccccccgcggctggtctttcggccagactttcagcggtgcccagttcaactga 874
|| ||| ||||||||||| ||||||||||| |||||||| ||||||||| |||||
Sbjct: 177 cgtcccgcgcggctggtcattcggccagaccttcagcggcgcccagttccactga 231
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 937 cccgattggagcctgccgagaggcgccatggttttatg 974
|||||||||||| ||| | || ||||||||||||||||
Sbjct: 308 cccgattggagcgtgctgggaagcgccatggttttatg 345
>gb|CB875905.1|CB875905 HX09L09w HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
3-PRIME, mRNA sequence
Length = 650
Score = 149 bits (75), Expect = 3e-034
Identities = 150/175 (85%)
Strand = Plus / Minus
Query: 700 gtggcaggccctgtcgcgcaactggggccagaactggcagagcaacacgctcctggacgg 759
||||||||| || || ||||||||||| |||||||||||||||||| |||| || |||||
Sbjct: 625 gtggcaggcgctctcacgcaactgggggcagaactggcagagcaacgcgctgctcgacgg 566
Query: 760 gcaggccctgtccttccgcgtcaccaccagcgacggccgctccgtgctctccaacaacgc 819
||||| ||| || |||||||| || | || |||||| |||||| |||||||||||||
Sbjct: 565 gcagggcctctcgttccgcgtgacggcaggcaacggccagtccgtggtctccaacaacgc 506
Query: 820 cgccccccgcggctggtctttcggccagactttcagcggtgcccagttcaactga 874
|| ||| ||||||||||| ||||||||||| |||||||| ||||||||| |||||
Sbjct: 505 cgtcccgcgcggctggtcattcggccagaccttcagcggcgcccagttccactga 451
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 937 cccgattggagcctgccgagaggcgccatggttttatg 974
|||||||||||| ||| | || ||||||||||||||||
Sbjct: 374 cccgattggagcgtgctgggaagcgccatggttttatg 337
>gb|BI959362.1|BI959362 HVSMEn0019G01f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019G01f, mRNA sequence
Length = 669
Score = 143 bits (72), Expect = 2e-032
Identities = 105/116 (90%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 160 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 219
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgct 315
|| ||||| |||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct: 220 gggaacctgtacagcacgggttacggcacgaacacggcggcgctgagcacggcgct 275
>gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D17
5-PRIME, mRNA sequence
Length = 534
Score = 143 bits (72), Expect = 2e-032
Identities = 111/124 (89%)
Strand = Plus / Plus
Query: 205 caccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaa 264
||||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| ||
Sbjct: 11 caccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctacgggaa 70
Query: 265 cctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttcaacaa 324
||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||||| |
Sbjct: 71 cctgtacagcacgggttacggcacgaacacggcggcgctgagcacggcgctgttcaacga 130
Query: 325 cggc 328
||||
Sbjct: 131 cggc 134
Score = 113 bits (57), Expect = 1e-023
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 578 aagaagggcggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtg 637
||||||||||| || | ||||||||||||||||||||||||||||||||||| || |||
Sbjct: 369 aagaagggcgggatgaggttcaccatcaacggccactcctacttcaacctggtgcttgtg 428
Query: 638 accaacgtggaaggcgccggcgacgtgca 666
|||||||||| |||||||||||||||||
Sbjct: 429 accaacgtggccggcgccggcgacgtgca 457
Score = 113 bits (57), Expect = 1e-023
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 416 gccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggctggtgcaac 475
||||||||| | |||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct: 207 gccaccaacctttgcccgcccaactacgcgctgcccaacgacgacggcggctggtgcaac 266
Query: 476 ccgccgcgcgcccacttcgacatg 499
||||||||||||||||||||||||
Sbjct: 267 ccgccgcgcgcccacttcgacatg 290
Score = 83.8 bits (42), Expect = 1e-014
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 696 ccgggtggcaggccctgtcgcgcaactggggccagaactggcagagcaac 745
|||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 484 ccgggtggcaggccatgtcccgcaactggggccagaactggcagagcaac 533
>gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019P07f, mRNA sequence
Length = 619
Score = 137 bits (69), Expect = 1e-030
Identities = 162/193 (83%)
Strand = Plus / Plus
Query: 470 tgcaacccgccgcgcgcccacttcgacatgtcgcagcccgtgttccagcgcatcgcgctc 529
||||||||||||||| |||||||||||||| | |||| | |||| | ||||| ||
Sbjct: 1 tgcaacccgccgcgcccccacttcgacatggccgagccggccttcctccacatcgggcag 60
Query: 530 tacagggccggcattgttcccgtctcctaccgcagggttgcgtgcaacaagaagggcggc 589
||| | |||||||| || ||||| |||||| | ||||| ||||| |||||||| |||
Sbjct: 61 taccgcgccggcatcgtacccgtttcctacagaagggtgccgtgcgtgaagaaggggggc 120
Query: 590 atacgtttcaccatcaacggccactcctacttcaacctggtactggtgaccaacgtggaa 649
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 121 atccggttcaccatcaacggccactcctacttcaacctggtgctggtgaccaacgtggcc 180
Query: 650 ggcgccggcgacg 662
|||||||||||||
Sbjct: 181 ggcgccggcgacg 193
Score = 85.7 bits (43), Expect = 3e-015
Identities = 88/103 (85%)
Strand = Plus / Plus
Query: 696 ccgggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacacgctcctgg 755
|||| ||||||||| |||| |||||||||||| |||||||||||||| ||| ||||||
Sbjct: 224 ccggctggcaggccatgtcccgcaactggggcatgaactggcagagcatcaccttcctgg 283
Query: 756 acgggcaggccctgtccttccgcgtcaccaccagcgacggccg 798
|||| ||| ||| |||||| | |||||| |||||||||||||
Sbjct: 284 acggccagtgcctctccttcagggtcacctccagcgacggccg 326
>gb|BF260514.2|BF260514 HVSMEf0022D10f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022D10f, mRNA sequence
Length = 768
Score = 133 bits (67), Expect = 2e-029
Identities = 100/111 (90%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 141 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 200
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacg 310
|| ||||| |||||| ||| |||||||| |||||||||||||||||||||
Sbjct: 201 gggaacctgtacagcacgggttacggcacgaacacggcggcgctgagcacg 251
Score = 60.0 bits (30), Expect = 2e-007
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 429 gcccgcccaacaacgcgctcccntccgacgacggcggctggtgcaacccgccgcgcgccc 488
||||||||||| ||||||| || ||||||| | ||||||||||||||| |||||||||
Sbjct: 355 gcccgcccaactacgcgctgccgaacgacgacagaggctggtgcaacccggcgcgcgccc 414
Query: 489 a 489
|
Sbjct: 415 a 415
>gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 5', mRNA sequence
Length = 626
Score = 133 bits (67), Expect = 2e-029
Identities = 112/127 (88%)
Strand = Plus / Plus
Query: 536 gccggcattgttcccgtctcctaccgcagggttgcgtgcaacaagaagggcggcatacgt 595
|||||||| || |||||||||||| | ||||| ||||| |||||||| ||||| ||
Sbjct: 41 gccggcatcgtacccgtctcctacagaagggtgccgtgcgtgaagaaggggggcatccgg 100
Query: 596 ttcaccatcaacggccactcctacttcaacctggtactggtgaccaacgtggaaggcgcc 655
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 101 ttcaccatcaacggccactcctacttcaacctggtgctggtgaccaacgtggccggcgcc 160
Query: 656 ggcgacg 662
|||||||
Sbjct: 161 ggcgacg 167
Score = 97.6 bits (49), Expect = 9e-019
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 696 ccgggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacacgctcctgg 755
|||| ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||
Sbjct: 198 ccggctggcaggccatgtcccgcaactggggcatgaactggcagagcaacaccttcctgg 257
Query: 756 acgggcaggccctgtccttccgcgtcaccaccagcgacggccgctccgt 804
|||| ||| ||| |||||| | |||||| |||||||||||||| ||||
Sbjct: 258 acggccagtgcctctccttcagggtcacctccagcgacggccgcaccgt 306
>gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0013B19f, mRNA sequence
Length = 626
Score = 131 bits (66), Expect = 6e-029
Identities = 107/121 (88%)
Strand = Plus / Plus
Query: 379 cggccgctcgtgtctgccgggctccgtcgtggtgacggccaccaacttctgcccgcccaa 438
|||| ||||||| | |||||| ||| || ||||||| |||||||||||||||||||||||
Sbjct: 89 cggcagctcgtgccggccggggtccatcatggtgaccgccaccaacttctgcccgcccaa 148
Query: 439 caacgcgctcccntccgacgacggcggctggtgcaacccgccgcgcgcccacttcgacat 498
| ||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 149 ctacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccccacttcgacat 208
Query: 499 g 499
|
Sbjct: 209 g 209
Score = 69.9 bits (35), Expect = 2e-010
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 282 acggcaccaacacggcggcgctgagcacggcgctcttcaacaacggc 328
||||||| |||||||||||||||||||||||||| |||||| |||||
Sbjct: 1 acggcacgaacacggcggcgctgagcacggcgctgttcaacgacggc 47
>gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024O07f, mRNA sequence
Length = 823
Score = 125 bits (63), Expect = 4e-027
Identities = 108/123 (87%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| | |||
Sbjct: 192 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgctgctac 251
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttc 319
| ||||| |||||| ||| |||||||| ||||| |||||||||||||||||||| |||
Sbjct: 252 cggaacctgtacagcacgggttacggcacgaacactgcggcgctgagcacggcgctgttc 311
Query: 320 aac 322
|||
Sbjct: 312 aac 314
Score = 87.7 bits (44), Expect = 8e-016
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 418 caccaacttctgcccgcccaaca-acgcgctcccntccgacgacggcggctggtgcaacc 476
||||||| | |||||||||||| ||||||| || |||| ||||||||||||||||||
Sbjct: 395 caccaacctttgcccgcccaacctacgcgctgcccaacgaccacggcggctggtgcaacc 454
Query: 477 cgccgcgcgcccacttcgacatg 499
|||||||||||||||||||||||
Sbjct: 455 cgccgcgcgcccacttcgacatg 477
Score = 69.9 bits (35), Expect = 2e-010
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 596 ttcaccatcaacggccactcctacttcaacctggtactggtgaccaacgtggaaggcgcc 655
|||||||||||||||||||||||||| ||||||| || | ||||||||||| ||||||
Sbjct: 575 ttcaccatcaacggccactcctactttaacctggggcttgagaccaacgtggccggcgcc 634
Query: 656 ggc 658
|||
Sbjct: 635 ggc 637
>gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d09 5', mRNA sequence
Length = 536
Score = 121 bits (61), Expect = 6e-026
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 578 aagaagggcggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtg 637
|||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 272 aagaaggggggcatccggttcaccatcaacggccactcctacttcaacctggtgctggtg 331
Query: 638 accaacgtggaaggcgccggcgacg 662
|||||||||| |||||||||||||
Sbjct: 332 accaacgtggccggcgccggcgacg 356
Score = 97.6 bits (49), Expect = 9e-019
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 696 ccgggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacacgctcctgg 755
|||| ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||
Sbjct: 387 ccggctggcaggccatgtcccgcaactggggcatgaactggcagagcaacaccttcctgg 446
Query: 756 acgggcaggccctgtccttccgcgtcaccaccagcgacggccgctccgt 804
|||| ||| ||| |||||| | |||||| |||||||||||||| ||||
Sbjct: 447 acggccagtgcctctccttcagggtcacctccagcgacggccgcaccgt 495
>gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 3', mRNA sequence
Length = 701
Score = 121 bits (61), Expect = 6e-026
Identities = 79/85 (92%)
Strand = Plus / Minus
Query: 578 aagaagggcggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtg 637
|||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 699 aagaaggggggcatccggttcaccatcaacggccactcctacttcaacctggtgctggtg 640
Query: 638 accaacgtggaaggcgccggcgacg 662
|||||||||| |||||||||||||
Sbjct: 639 accaacgtggccggcgccggcgacg 615
Score = 97.6 bits (49), Expect = 9e-019
Identities = 94/109 (86%)
Strand = Plus / Minus
Query: 696 ccgggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacacgctcctgg 755
|||| ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||
Sbjct: 584 ccggctggcaggccatgtcccgcaactggggcatgaactggcagagcaacaccttcctgg 525
Query: 756 acgggcaggccctgtccttccgcgtcaccaccagcgacggccgctccgt 804
|||| ||| ||| |||||| | |||||| |||||||||||||| ||||
Sbjct: 524 acggccagtgcctctccttcagggtcacctccagcgacggccgcaccgt 476
>gb|BQ765644.1|BQ765644 EBro03_SQ007_C21_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_C21 5', mRNA sequence
Length = 413
Score = 121 bits (61), Expect = 6e-026
Identities = 112/129 (86%)
Strand = Plus / Plus
Query: 200 cacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtac 259
||||| || ||||||||||||||||| ||||||||||| |||||||| || || ||||||
Sbjct: 155 cacgcgacgttctacggcggcggcgacgcgtccggcacgatgggcggcgcctgcgggtac 214
Query: 260 ggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttc 319
|||||||| ||| || |||||||||||| | ||| ||||||||||||| || ||||||
Sbjct: 215 ggcaacctgtacggcgcggggtacggcacgcagacgacggcgctgagcaccgccctcttc 274
Query: 320 aacaacggc 328
|||||||||
Sbjct: 275 aacaacggc 283
Score = 63.9 bits (32), Expect = 1e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 413 acggccaccaacttctgcccgcccaacaacgcgctc 448
||||||||||||||||||||||||||| ||||||||
Sbjct: 365 acggccaccaacttctgcccgcccaactacgcgctc 400
>gb|BI959974.1|BI959974 HVSMEn0022L12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022L12f, mRNA sequence
Length = 707
Score = 113 bits (57), Expect = 1e-023
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 205 caccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaa 264
|||||||||||| |||||| | ||||||||||| |||||||| ||||| || ||| | ||
Sbjct: 171 caccttctacgggggcggcaacgcgtccggcacaatgggcggcgcgtgcggctactggaa 230
Query: 265 cctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttcaa 321
||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct: 231 cctgtacagcacgggttacggcacgaacacggcggcgctgagcacggcgctgttcaa 287
>gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023N12f, mRNA sequence
Length = 667
Score = 113 bits (57), Expect = 1e-023
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 578 aagaagggcggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtg 637
||||||||||| || | ||||||||||||||||||||||||||||||||||| || |||
Sbjct: 307 aagaagggcgggatgaggttcaccatcaacggccactcctacttcaacctggtgcttgtg 366
Query: 638 accaacgtggaaggcgccggcgacgtgca 666
|||||||||| |||||||||||||||||
Sbjct: 367 accaacgtggccggcgccggcgacgtgca 395
Score = 89.7 bits (45), Expect = 2e-016
Identities = 75/84 (89%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 416 gccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggctggtgcaac 475
||||||||| | |||||||||||| ||||||| | |||||||||||||||||||||
Sbjct: 146 gccaccaacctttgcccgcccaactacgcgct-gcggaggacgacggcggctggtgcaac 204
Query: 476 ccgccgcgcgcccacttcgacatg 499
||||||||||||||||||||||||
Sbjct: 205 ccgccgcgcgcccacttcgacatg 228
Score = 61.9 bits (31), Expect = 5e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 290 aacacggcggcgctgagcacggcgctcttcaacaacggc 328
|||||||||||||||||||||||||| |||||| |||||
Sbjct: 35 aacacggcggcgctgagcacggcgctgttcaacgacggc 73
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 722 tggggccagaactggcagagcaac 745
|||||||| |||||||||||||||
Sbjct: 448 tggggccataactggcagagcaac 471
>gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001B16f, mRNA sequence
Length = 574
Score = 113 bits (57), Expect = 1e-023
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 416 gccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggctggtgcaac 475
||||||||| | |||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct: 127 gccaccaacctttgcccgcccaactacgcgctgcccaacgacgacggcggctggtgcaac 186
Query: 476 ccgccgcgcgcccacttcgacatg 499
||||||||||||||||||||||||
Sbjct: 187 ccgccgcgcgcccacttcgacatg 210
Score = 105 bits (53), Expect = 4e-021
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 578 aagaagggcggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtg 637
||||||||||| || | |||||||||||||||||||||||||| |||||||| || |||
Sbjct: 289 aagaagggcgggatgaggttcaccatcaacggccactcctactttaacctggtgcttgtg 348
Query: 638 accaacgtggaaggcgccggcgacgtgca 666
|||||||||| |||||||||||||||||
Sbjct: 349 accaacgtggccggcgccggcgacgtgca 377
Score = 67.9 bits (34), Expect = 8e-010
Identities = 47/50 (94%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 696 ccgggtggcaggccctgtcgcgcaactggggccagaactggcagagcaac 745
|||||||| |||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 403 ccgggtgg-aggccctgtcccgcaactggggccagaactggcaaagcaac 451
Score = 63.9 bits (32), Expect = 1e-008
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 281 tacggcaccaacacggcggcgctgagcacggcgctcttcaacaacggc 328
|||||||| ||||| |||||||||||||||||||| |||||| |||||
Sbjct: 7 tacggcacgaacacagcggcgctgagcacggcgctgttcaacgacggc 54
>gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 5', mRNA sequence
Length = 654
Score = 113 bits (57), Expect = 1e-023
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 578 aagaagggcggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtg 637
||||||||||| || | ||||||||||||||||||||||||||||||||||| || |||
Sbjct: 226 aagaagggcgggatgaggttcaccatcaacggccactcctacttcaacctggtgcttgtg 285
Query: 638 accaacgtggaaggcgccggcgacgtgca 666
|||||||||| |||||||||||||||||
Sbjct: 286 accaacgtggccggcgccggcgacgtgca 314
Score = 113 bits (57), Expect = 1e-023
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 416 gccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggctggtgcaac 475
||||||||| | |||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct: 64 gccaccaacctttgcccgcccaactacgcgctgcccaacgacgacggcggctggtgcaac 123
Query: 476 ccgccgcgcgcccacttcgacatg 499
||||||||||||||||||||||||
Sbjct: 124 ccgccgcgcgcccacttcgacatg 147
Score = 107 bits (54), Expect = 9e-022
Identities = 111/130 (85%)
Strand = Plus / Plus
Query: 696 ccgggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacacgctcctgg 755
|||||||||||||| |||| |||||||||||||||||||||||||||||| || ||| |
Sbjct: 341 ccgggtggcaggccatgtcccgcaactggggccagaactggcagagcaacgcggacctcg 400
Query: 756 acgggcaggccctgtccttccgcgtcaccaccagcgacggccgctccgtgctctccaaca 815
|||| ||| ||| |||||||| |||||| ||||||||||||| |||| | |||||
Sbjct: 401 acggccagagcctctccttccgggtcaccctcagcgacggccgcaccgtcaccagcaaca 460
Query: 816 acgccgcccc 825
||||||||||
Sbjct: 461 acgccgcccc 470
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 195,568
Number of Sequences: 312970
Number of extensions: 195568
Number of successful extensions: 55766
Number of sequences better than 0.5: 97
Number of HSP's better than 0.5 without gapping: 96
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 55487
Number of HSP's gapped (non-prelim): 254
length of query: 1294
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1275
effective length of database: 169,188,109
effective search space: 215714838975
effective search space used: 215714838975
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)