BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493944.2.1
(2055 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK122199.1|CK122199 BES1824102c17 BES1824 Hordeum vulgar... 375 e-102
emb|AJ534447.1|HVU534447 Hordeum vulgare mRNA for apoplasti... 375 e-102
gb|BU994370.1|BU994370 HM06N08r HM Hordeum vulgare subsp. v... 335 3e-090
gb|BQ468711.1|BQ468711 HM02B12r HM Hordeum vulgare subsp. v... 204 8e-051
gb|BF625535.2|BF625535 HVSMEa0011C02f Hordeum vulgare seedl... 190 1e-046
gb|BE559434.1|BE559434 HV_CEb0024K20f Hordeum vulgare seedl... 190 1e-046
gb|BF264866.2|BF264866 HV_CEa0010J14f Hordeum vulgare seedl... 190 1e-046
gb|BE214358.2|BE214358 HV_CEb0003D11f Hordeum vulgare seedl... 190 1e-046
gb|BI778225.2|BI778225 EBro07_SQ002_J10_R root, 3 week, red... 190 1e-046
gb|BU973477.1|BU973477 HB25B07r BC Hordeum vulgare subsp. v... 184 8e-045
gb|BU996678.1|BU996678 HM14G07r HM Hordeum vulgare subsp. v... 180 1e-043
gb|BU996531.1|BU996531 HM13O15r HM Hordeum vulgare subsp. v... 168 5e-040
gb|BQ468801.1|BQ468801 HM02G04r HM Hordeum vulgare subsp. v... 161 1e-037
gb|BQ764136.1|BQ764136 EBro03_SQ006_J10_R root, 3 week, wat... 147 2e-033
gb|AL503000.1|AL503000 AL503000 Hordeum vulgare Barke roots... 119 4e-025
gb|BF064963.3|BF064963 HV_CEb0022D03f Hordeum vulgare seedl... 119 4e-025
gb|AV930059.1|AV930059 AV930059 K. Sato unpublished cDNA li... 119 4e-025
gb|AV930060.1|AV930060 AV930060 K. Sato unpublished cDNA li... 119 4e-025
gb|AJ434754.1|AJ434754 AJ434754 S00002 Hordeum vulgare subs... 119 4e-025
gb|BJ449827.1|BJ449827 BJ449827 K. Sato unpublished cDNA li... 119 4e-025
gb|BJ457246.1|BJ457246 BJ457246 K. Sato unpublished cDNA li... 119 4e-025
gb|BJ467660.1|BJ467660 BJ467660 K. Sato unpublished cDNA li... 119 4e-025
gb|BQ760946.1|BQ760946 EBro03_SQ003_O23_R root, 3 week, wat... 119 4e-025
gb|BQ762965.1|BQ762965 EBro02_SQ006_O16_R root, 3 week, hyd... 115 6e-024
gb|AL505748.1|AL505748 AL505748 Hordeum vulgare Barke roots... 111 9e-023
gb|BF267660.3|BF267660 HV_CEa0018I16f Hordeum vulgare seedl... 111 9e-023
gb|AV924971.1|AV924971 AV924971 K. Sato unpublished cDNA li... 111 9e-023
gb|AV924972.1|AV924972 AV924972 K. Sato unpublished cDNA li... 111 9e-023
gb|BF260173.2|BF260173 HVSMEf0021E20f Hordeum vulgare seedl... 101 9e-020
gb|BI959253.1|BI959253 HVSMEn0018O17f Hordeum vulgare rachi... 82 8e-014
gb|BI960418.1|BI960418 HVSMEn0024I13f Hordeum vulgare rachi... 82 8e-014
gb|BQ754305.1|BQ754305 EBca01_SQ003_I07_R carpel, pre-anthe... 82 8e-014
gb|BI951140.1|BI951140 HVSMEl0024K02f Hordeum vulgare spike... 80 3e-013
gb|CB879899.1|CB879899 HP08F21T HP Hordeum vulgare subsp. v... 74 2e-011
gb|BG343465.2|BG343465 HVSMEg0005N10f Hordeum vulgare pre-a... 70 3e-010
gb|BQ765899.1|BQ765899 EBro03_SQ008_A13_R root, 3 week, wat... 70 3e-010
gb|BQ468368.1|BQ468368 HM01B03T HM Hordeum vulgare subsp. v... 66 5e-009
gb|BQ471962.1|BQ471962 HV04A04r HV Hordeum vulgare subsp. v... 66 5e-009
gb|BQ768116.1|BQ768116 EBro08_SQ010_A24_R root, 3 week, dro... 66 5e-009
gb|BF254441.2|BF254441 HVSMEf0004A12f Hordeum vulgare seedl... 62 8e-008
gb|CB882214.1|CB882214 HL01D13w HL Hordeum vulgare subsp. v... 62 8e-008
gb|AL505004.1|AL505004 AL505004 Hordeum vulgare Barke roots... 60 3e-007
gb|BF630067.2|BF630067 HVSMEb0007N12f Hordeum vulgare seedl... 60 3e-007
gb|BF258913.2|BF258913 HVSMEf0017A16f Hordeum vulgare seedl... 60 3e-007
gb|BF065803.2|BF065803 HV_CEb0014A16f Hordeum vulgare seedl... 60 3e-007
gb|BE558756.2|BE558756 HV_CEb0020F02f Hordeum vulgare seedl... 60 3e-007
gb|AV926089.1|AV926089 AV926089 K. Sato unpublished cDNA li... 60 3e-007
gb|BU995607.1|BU995607 HM10M18r HM Hordeum vulgare subsp. v... 60 3e-007
gb|BF254279.2|BF254279 HVSMEf0003I12f Hordeum vulgare seedl... 58 1e-006
gb|BF616993.2|BF616993 HVSMEc0014D10f Hordeum vulgare seedl... 54 2e-005
gb|BQ468810.1|BQ468810 HM02G15r HM Hordeum vulgare subsp. v... 54 2e-005
gb|AL505127.1|AL505127 AL505127 Hordeum vulgare Barke roots... 50 3e-004
gb|BF627833.2|BF627833 HVSMEb0005O19f Hordeum vulgare seedl... 50 3e-004
gb|BI952001.1|BI952001 HVSMEm0004C17f Hordeum vulgare green... 50 3e-004
gb|BI952802.1|BI952802 HVSMEm0007M07f Hordeum vulgare green... 50 3e-004
gb|AV923014.1|AV923014 AV923014 K. Sato unpublished cDNA li... 50 3e-004
gb|AV923840.1|AV923840 AV923840 K. Sato unpublished cDNA li... 50 3e-004
gb|AV923941.1|AV923941 AV923941 K. Sato unpublished cDNA li... 50 3e-004
gb|AV924542.1|AV924542 AV924542 K. Sato unpublished cDNA li... 50 3e-004
gb|AV926810.1|AV926810 AV926810 K. Sato unpublished cDNA li... 50 3e-004
gb|BQ463718.1|BQ463718 HG01D14r HG Hordeum vulgare subsp. v... 50 3e-004
gb|BQ767484.1|BQ767484 EBro08_SQ009_D05_R root, 3 week, dro... 50 3e-004
gb|CA020717.1|CA020717 HZ37F12r HZ Hordeum vulgare subsp. v... 50 3e-004
gb|AL450603.1|AL450603 AL450603 Hordeum vulgare Barke etiol... 48 0.001
gb|CA019964.1|CA019964 HV13O24r HV Hordeum vulgare subsp. v... 48 0.001
gb|AL507249.1|AL507249 AL507249 Hordeum vulgare Barke devel... 46 0.005
gb|AL507250.1|AL507250 AL507250 Hordeum vulgare Barke devel... 46 0.005
gb|AL507294.1|AL507294 AL507294 Hordeum vulgare Barke devel... 46 0.005
gb|BF255160.2|BF255160 HVSMEf0006B22f Hordeum vulgare seedl... 46 0.005
gb|BI947239.1|BI947239 HVSMEl0004J14f Hordeum vulgare spike... 46 0.005
gb|BE559132.2|BE559132 HV_CEb0023A11f Hordeum vulgare seedl... 46 0.005
gb|AV909746.1|AV909746 AV909746 K. Sato unpublished cDNA li... 46 0.005
gb|AV911648.1|AV911648 AV911648 K. Sato unpublished cDNA li... 46 0.005
gb|AV917398.1|AV917398 AV917398 K. Sato unpublished cDNA li... 46 0.005
gb|AV922576.1|AV922576 AV922576 K. Sato unpublished cDNA li... 46 0.005
gb|BJ461930.1|BJ461930 BJ461930 K. Sato unpublished cDNA li... 46 0.005
gb|BM097445.2|BM097445 EBro05_SQ003_F04_R root, 3 week, red... 46 0.005
gb|CD240714.1|CD240714 LP10313 Lemma/palea-enriched cDNA li... 46 0.005
gb|BJ448793.2|BJ448793 BJ448793 K. Sato unpublished cDNA li... 46 0.005
gb|AL507193.1|AL507193 AL507193 Hordeum vulgare Barke devel... 44 0.018
gb|BF254630.1|BF254630 HVSMEf0004I24f Hordeum vulgare seedl... 44 0.018
gb|AV927370.1|AV927370 AV927370 K. Sato unpublished cDNA li... 44 0.018
gb|CB883585.1|CB883585 HQ02L05w HQ Hordeum vulgare subsp. v... 44 0.018
gb|BE420989.1|BE420989 HWM004.F06 ITEC HWM Barley Leaf Libr... 42 0.072
gb|AL502406.1|AL502406 AL502406 Hordeum vulgare Barke roots... 42 0.072
gb|BF618065.2|BF618065 HVSMEc0003K12f Hordeum vulgare seedl... 42 0.072
gb|BF256656.2|BF256656 HVSMEf0010J22f Hordeum vulgare seedl... 42 0.072
gb|BF260867.2|BF260867 HVSMEf0023C11f Hordeum vulgare seedl... 42 0.072
gb|BI953662.1|BI953662 HVSMEm0013M11f Hordeum vulgare green... 42 0.072
gb|BF263316.2|BF263316 HV_CEa0006G21f Hordeum vulgare seedl... 42 0.072
gb|BF263973.2|BF263973 HV_CEa0008D03f Hordeum vulgare seedl... 42 0.072
gb|BF258931.3|BF258931 HVSMEf0017B15f Hordeum vulgare seedl... 42 0.072
gb|BF267767.3|BF267767 HV_CEa0018N10f Hordeum vulgare seedl... 42 0.072
gb|AV928934.1|AV928934 AV928934 K. Sato unpublished cDNA li... 42 0.072
gb|AV930971.1|AV930971 AV930971 K. Sato unpublished cDNA li... 42 0.072
gb|AV931702.1|AV931702 AV931702 K. Sato unpublished cDNA li... 42 0.072
gb|BQ468675.1|BQ468675 HM01P04T HM Hordeum vulgare subsp. v... 42 0.072
gb|BQ659924.1|BQ659924 HG01D14u HG Hordeum vulgare subsp. v... 42 0.072
gb|BQ660912.1|BQ660912 HM01B03w HM Hordeum vulgare subsp. v... 42 0.072
gb|BQ661106.1|BQ661106 HM01P04w HM Hordeum vulgare subsp. v... 42 0.072
gb|CA030695.1|CA030695 HX07N13r HX Hordeum vulgare subsp. v... 42 0.072
gb|CB875288.1|CB875288 HX07N13w HX Hordeum vulgare subsp. v... 42 0.072
gb|CB881780.1|CB881780 HM10N17w HM Hordeum vulgare subsp. v... 42 0.072
gb|AL504044.1|AL504044 AL504044 Hordeum vulgare Barke roots... 40 0.28
gb|BF631001.2|BF631001 HVSMEb0014L01f Hordeum vulgare seedl... 40 0.28
gb|BE216034.1|BE216034 HV_CEb0009C24f Hordeum vulgare seedl... 40 0.28
gb|BG344005.2|BG344005 HVSMEg0007F22f Hordeum vulgare pre-a... 40 0.28
gb|BE195367.3|BE195367 HVSMEh0089A16f Hordeum vulgare 5-45 ... 40 0.28
gb|BF262904.3|BF262904 HV_CEa0005E13f Hordeum vulgare seedl... 40 0.28
gb|AJ434656.1|AJ434656 AJ434656 S00002 Hordeum vulgare subs... 40 0.28
gb|BJ464499.1|BJ464499 BJ464499 K. Sato unpublished cDNA li... 40 0.28
gb|BJ466867.1|BJ466867 BJ466867 K. Sato unpublished cDNA li... 40 0.28
gb|BQ469354.1|BQ469354 HM04E23r HM Hordeum vulgare subsp. v... 40 0.28
gb|BQ470110.1|BQ470110 HX01M22T HX Hordeum vulgare subsp. v... 40 0.28
gb|BI778837.2|BI778837 EBro01_SQ001_L05_R root, 3 week, hyd... 40 0.28
gb|BU982210.1|BU982210 HA25N13r HA Hordeum vulgare subsp. v... 40 0.28
gb|CA000523.1|CA000523 HS07J15u HS Hordeum vulgare subsp. v... 40 0.28
gb|CA030107.1|CA030107 HX06B19r HX Hordeum vulgare subsp. v... 40 0.28
gb|CA030358.1|CA030358 HX06N04r HX Hordeum vulgare subsp. v... 40 0.28
gb|CD662700.1|CD662700 UCRHV18_02dd02_b1 Drought-stressed D... 40 0.28
gb|CD240721.1|CD240721 LP10327 Lemma/palea-enriched cDNA li... 40 0.28
emb|AJ567377.2|HVU567377 Hordeum vulgare partial mRNA for s... 40 0.28
>gb|CK122199.1|CK122199 BES1824102c17 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010C172 5-PRIME, mRNA sequence
Length = 718
Score = 375 bits (189), Expect = e-102
Identities = 386/451 (85%), Gaps = 3/451 (0%)
Strand = Plus / Minus
Query: 737 aagctcacctccacgtcagcctgtgccgtttgtatcccggtcacctcgacgtgatgtcct 796
||||||||||||||||||||||||| || ||| |||||| ||||||||||| | |||
Sbjct: 618 aagctcacctccacgtcagcctgtgaggtccgtagcccggtgacctcgacgtgctctccc 559
Query: 797 gccttgattaccctgttcctgagagtgaccgactttg---ctctcagcgcctccacctcc 853
||||| ||||||||| ||| |||||| | || | ||||||||||| | ||||
Sbjct: 558 cgcttgaccaccctgttcttgatgctgaccggccttttccccctcagcgcctcaagctcc 499
Query: 854 tcgataggccactgcagcagctgcttcccactggggtccagccacaccgtccttggaatc 913
|| | |||||||||| ||||||| ||||||| ||||||||||| ||| | || ||||||
Sbjct: 498 tccacgggccactgcatcagctgcctcccactcgggtccagccaaacctttctcggaatc 439
Query: 914 gcctggattccagcccagcctttagccacatcgtcggcggcggtgtcggactcgttagcc 973
||||||||||| ||||| || || || || |||||| |||||| |||||||||||| |||
Sbjct: 438 gcctggattccggcccatcccttggcgacgtcgtcgacggcggcgtcggactcgttggcc 379
Query: 974 cagccccacaggatgcggcgccgcttggccgggtcgtagaacgtcttggacgcgtagaag 1033
|||||||| ||||||||||| |||||| ||||||||||||| |||||||| |||||||||
Sbjct: 378 cagccccagaggatgcggcggcgcttgaccgggtcgtagaaggtcttggaggcgtagaag 319
Query: 1034 ttgccgtagtcgtagcgcaggcggtgctcgtcgccggcggggtcgtccggcacgtaccgc 1093
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 318 ttgccgtagtcgtagcgcaggtggtgctcgtcgccggcggggttgtccggcacgtaccgc 259
Query: 1094 tcggccctcgggtggtacgtgcccacggtgtagtagtcgtaccgccggaggtcgaggctg 1153
|| | | | ||| ||| ||||| ||||||||||||||||| || || ||||||||||||
Sbjct: 258 tccgtcttgcggtcgtaggtgccgacggtgtagtagtcgtagcggcgcaggtcgaggctg 199
Query: 1154 ttcttgagcacgtgcttgacccttgggccgg 1184
||||||||||||||||| ||||| |||||||
Sbjct: 198 ttcttgagcacgtgcttcaccctggggccgg 168
Score = 149 bits (75), Expect = 4e-034
Identities = 105/115 (91%)
Strand = Plus / Minus
Query: 1232 accgggtagaagtcagggcactcccacatccccgtgggcgccgagtgcagcggccgccgc 1291
|||||||| | ||| ||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 117 accgggtacaggtccgggcactcccacatccccgtgggcgccgagtgcagcggcttcctc 58
Query: 1292 acccgcctccaccgccggaagtcgcggctacggtacacgtacgccacgccgcggg 1346
|||||| |||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 57 acccgcgtccaccgcatgaagtcgcggctccggtacacgtacgccacgccgcggg 3
>emb|AJ534447.1|HVU534447 Hordeum vulgare mRNA for apoplastic invertase 1 (cwinw1 gene)
Length = 2095
Score = 375 bits (189), Expect = e-102
Identities = 386/451 (85%), Gaps = 3/451 (0%)
Strand = Plus / Minus
Query: 737 aagctcacctccacgtcagcctgtgccgtttgtatcccggtcacctcgacgtgatgtcct 796
||||||||||||||||||||||||| || ||| |||||| ||||||||||| | |||
Sbjct: 1312 aagctcacctccacgtcagcctgtgaggtccgtagcccggtgacctcgacgtgctctccc 1253
Query: 797 gccttgattaccctgttcctgagagtgaccgactttg---ctctcagcgcctccacctcc 853
||||| ||||||||| ||| |||||| | || | ||||||||||| | ||||
Sbjct: 1252 cgcttgaccaccctgttcttgatgctgaccggccttttccccctcagcgcctcaagctcc 1193
Query: 854 tcgataggccactgcagcagctgcttcccactggggtccagccacaccgtccttggaatc 913
|| | |||||||||| ||||||| ||||||| ||||||||||| ||| | || ||||||
Sbjct: 1192 tccacgggccactgcatcagctgcctcccactcgggtccagccaaacctttctcggaatc 1133
Query: 914 gcctggattccagcccagcctttagccacatcgtcggcggcggtgtcggactcgttagcc 973
||||||||||| ||||| || || || || |||||| |||||| |||||||||||| |||
Sbjct: 1132 gcctggattccggcccatcccttggcgacgtcgtcgacggcggcgtcggactcgttggcc 1073
Query: 974 cagccccacaggatgcggcgccgcttggccgggtcgtagaacgtcttggacgcgtagaag 1033
|||||||| ||||||||||| |||||| ||||||||||||| |||||||| |||||||||
Sbjct: 1072 cagccccagaggatgcggcggcgcttgaccgggtcgtagaaggtcttggaggcgtagaag 1013
Query: 1034 ttgccgtagtcgtagcgcaggcggtgctcgtcgccggcggggtcgtccggcacgtaccgc 1093
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 1012 ttgccgtagtcgtagcgcaggtggtgctcgtcgccggcggggttgtccggcacgtaccgc 953
Query: 1094 tcggccctcgggtggtacgtgcccacggtgtagtagtcgtaccgccggaggtcgaggctg 1153
|| | | | ||| ||| ||||| ||||||||||||||||| || || ||||||||||||
Sbjct: 952 tccgtcttgcggtcgtaggtgccgacggtgtagtagtcgtagcggcgcaggtcgaggctg 893
Query: 1154 ttcttgagcacgtgcttgacccttgggccgg 1184
||||||||||||||||| ||||| |||||||
Sbjct: 892 ttcttgagcacgtgcttcaccctggggccgg 862
Score = 305 bits (154), Expect = 3e-081
Identities = 363/431 (84%), Gaps = 3/431 (0%)
Strand = Plus / Minus
Query: 1412 gccgtggtcgggtcgcggaactgcgtcacgttgatgccgccctcggggacgatgacgggg 1471
||||| |||||||| |||||||| || |||||||||||||||| || ||||||| |||
Sbjct: 643 gccgtcgtcgggtcccggaactgggtggcgttgatgccgccctccggcacgatgatcggg 584
Query: 1472 ttgtgcgagggcttcacccactcccggagcagcgggtccgacacgttcttcgggtacgcc 1531
||| | |||||||||||||| |||||||||||||||||| |||||| ||| | ||
Sbjct: 583 ttgccccgcggcttcacccactcgcggagcagcgggtccgacttgttcttggggaaggcg 524
Query: 1532 acgttccggacctggtagttgatgtccgggtggtccacgcccgtgtacatgatcaccggg 1591
| |||| | |||| |||||||||||| | | |||| | |||||||||||||||| ||||
Sbjct: 523 atgttctgcacctcgtagttgatgtcggcgcggtcgatgcccgtgtacatgatcgccgg- 465
Query: 1592 ccgccgccgtcgggcagcaccgtcgccgacccggaccagcagccgtacctgtcgcccggg 1651
|| ||||||| |||| | |||||||||| |||||||| |||||| |||| | |
Sbjct: 464 -cgt-gccgtcgcgcaggatgrtcgccgaccccgaccagcacccgtacttgtccgacttg 407
Query: 1652 atgcttggtctgagcgccggctctagcgccacccagttgatgaggtctcgcgacaccgag 1711
||||| || || |||| ||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 406 atgctcggctggattgccgtctccagcgccacccagttgatgaggtcacgcgacaccgag 347
Query: 1712 tgcgcccacacgatgttgccccatacggcgcccttgggattgtattggtagaagaaatgg 1771
||||||||||||||||||||||| || || |||||||| ||||| |||||||| ||||||
Sbjct: 346 tgcgcccacacgatgttgccccacaccgcacccttggggttgtactggtagaacaaatgg 287
Query: 1772 taccaccccttgtagtacatgggcgcgttgggatcattgatccagttcttggggggctgg 1831
||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||
Sbjct: 286 taccaccccttgtagtacatgggcgcgttgggatcgttgatccagttctttatgggccgg 227
Query: 1832 aagtggtaccc 1842
|||||||||||
Sbjct: 226 aagtggtaccc 216
Score = 204 bits (103), Expect = 8e-051
Identities = 247/295 (83%)
Strand = Plus / Minus
Query: 243 ccggcttcttcatctcccacgcggtgagacgggacaccttgacgtgcgccctcccgttgt 302
|||||||||||||||||||||| ||||| |||||||||| || | || | |||||||
Sbjct: 1815 ccggcttcttcatctcccacgccgtgagctccgacaccttgatgtccaccttgccgttgt 1756
Query: 303 tgaacacgtagaggcgagcgtccttgccgatggccagcgacgggtagaccctggagagga 362
|||| |||| |||||||||| |||||| | || |||| ||||||||||| ||||||||
Sbjct: 1755 tgaagacgtgaaggcgagcgttcttgcccagcgcgagcgtcgggtagacccgggagagga 1696
Query: 363 tgcaggtcttgcccccggctccgaagctctcaacgaccgaccggtcgatcaggcttctca 422
|||||||| ||||||| || ||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 1695 tgcaggtcctgccccctgccccgaagctctccacgacggaccgatcgatcaggcttctca 1636
Query: 423 gggatatcttgccgttcgagatgtccgtgtcgacaaatcctgcaaatgtcgggcggtaca 482
| ||||||||||| || | ||||| ||||| ||||| ||||| || ||||| ||| |
Sbjct: 1635 gagatatcttgcccttggctatgtcagtgtcaacaaagcctgcgaaggtcggcttgtata 1576
Query: 483 ggttcgggttcagggacgacttggtagggtcggtgcacatgagcaccacgggctt 537
||||||||||||| || ||| |||| || |||| ||||||||| || ||||||||
Sbjct: 1575 ggttcgggttcagagatgacatggttggatcggagcacatgaggacgacgggctt 1521
Score = 149 bits (75), Expect = 4e-034
Identities = 105/115 (91%)
Strand = Plus / Minus
Query: 1232 accgggtagaagtcagggcactcccacatccccgtgggcgccgagtgcagcggccgccgc 1291
|||||||| | ||| ||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 811 accgggtacaggtccgggcactcccacatccccgtgggcgccgagtgcagcggcttcctc 752
Query: 1292 acccgcctccaccgccggaagtcgcggctacggtacacgtacgccacgccgcggg 1346
|||||| |||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 751 acccgcgtccaccgcatgaagtcgcggctccggtacacgtacgccacgccgcggg 697
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 1924 gtagacgacatgcgacgctcctgcgagctgcaacagcagca 1964
|||||||||||||||||| || |||||||||| ||||||||
Sbjct: 139 gtagacgacatgcgacgccccggcgagctgcagcagcagca 99
Score = 54.0 bits (27), Expect = 2e-005
Identities = 120/151 (79%)
Strand = Plus / Minus
Query: 548 gcgggcttgaacaccctgaagaacaccgcggttctctccttgcggttggcggaggccagc 607
|||| ||||||||||| |||||| ||||| || |||||| | |||| ||||| |||
Sbjct: 1495 gcggccttgaacacccggaagaagaccgccgtcttctcctccagcttggacgaggcgagc 1436
Query: 608 acccacagcccgaacggccccacgccgcccctcacgtccgcgcgcttcacgccgcacagc 667
|||||||| ||||| || ||||||||||| ||||| || | | ||| || |||||||
Sbjct: 1435 acccacaggccgaaggggcccacgccgccttccacgtgggcacccctcatgctgcacagc 1376
Query: 668 ctctccgcgtcgtaggccagcgccgggtcca 698
||| ||||||| ||| |||||||||||||
Sbjct: 1375 ttctgggcgtcgttggctagcgccgggtcca 1345
>gb|BU994370.1|BU994370 HM06N08r HM Hordeum vulgare subsp. vulgare cDNA clone HM06N08
5-PRIME, mRNA sequence
Length = 590
Score = 335 bits (169), Expect = 3e-090
Identities = 360/423 (85%), Gaps = 3/423 (0%)
Strand = Plus / Minus
Query: 737 aagctcacctccacgtcagcctgtgccgtttgtatcccggtcacctcgacgtgatgtcct 796
||||||||||||||||||||||||| || ||| |||||| ||||||||||| | |||
Sbjct: 433 aagctcacctccacgtcagcctgtgaggtccgtagcccggtgacctcgacgtgctctccc 374
Query: 797 gccttgattaccctgttcctgagagtgaccgactttg---ctctcagcgcctccacctcc 853
||||| ||||||||| ||| |||||| | || | ||||||||||| | ||||
Sbjct: 373 cgcttgaccaccctgttcttgatgctgaccggccttttccccctcagcgcctcaagctcc 314
Query: 854 tcgataggccactgcagcagctgcttcccactggggtccagccacaccgtccttggaatc 913
|| | |||||||||| ||||||| ||||||| ||||||||||| ||| | || ||||||
Sbjct: 313 tccacgggccactgcatcagctgcctcccactcgggtccagccaaacctttctcggaatc 254
Query: 914 gcctggattccagcccagcctttagccacatcgtcggcggcggtgtcggactcgttagcc 973
||||||||||| ||||| || || || || |||||| |||||| |||||||||||| |||
Sbjct: 253 gcctggattccggcccatcccttggcgacgtcgtcgacggcggcgtcggactcgttggcc 194
Query: 974 cagccccacaggatgcggcgccgcttggccgggtcgtagaacgtcttggacgcgtagaag 1033
|||||||| ||||||||||| |||||| ||||||||||||| |||||||| |||||||||
Sbjct: 193 cagccccagaggatgcggcggcgcttgaccgggtcgtagaaggtcttggaggcgtagaag 134
Query: 1034 ttgccgtagtcgtagcgcaggcggtgctcgtcgccggcggggtcgtccggcacgtaccgc 1093
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 133 ttgccgtagtcgtagcgcaggtggtgctcgtcgccggcggggttgtccggcacgtaccgc 74
Query: 1094 tcggccctcgggtggtacgtgcccacggtgtagtagtcgtaccgccggaggtcgaggctg 1153
|| | | | ||| ||| ||||| ||||||||||||||||| || || ||||||||||||
Sbjct: 73 tccgtcttgcggtcgtaggtgccgacggtgtagtagtcgtagcggcgcaggtcgaggctg 14
Query: 1154 ttc 1156
|||
Sbjct: 13 ttc 11
Score = 42.1 bits (21), Expect = 0.072
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 599 gaggccagcacccacagcccgaacggccccacgccgc 635
||||| ||||||||||| ||||| || ||||||||||
Sbjct: 561 gaggcgagcacccacaggccgaaggggcccacgccgc 525
>gb|BQ468711.1|BQ468711 HM02B12r HM Hordeum vulgare subsp. vulgare cDNA clone HM02B12
5-PRIME, mRNA sequence
Length = 528
Score = 204 bits (103), Expect = 8e-051
Identities = 247/295 (83%)
Strand = Plus / Minus
Query: 243 ccggcttcttcatctcccacgcggtgagacgggacaccttgacgtgcgccctcccgttgt 302
|||||||||||||||||||||| ||||| |||||||||| || | || | |||||||
Sbjct: 321 ccggcttcttcatctcccacgccgtgagctccgacaccttgatgtccaccttgccgttgt 262
Query: 303 tgaacacgtagaggcgagcgtccttgccgatggccagcgacgggtagaccctggagagga 362
|||| |||| |||||||||| |||||| | || |||| ||||||||||| ||||||||
Sbjct: 261 tgaagacgtgaaggcgagcgttcttgcccagcgcgagcgtcgggtagacccgggagagga 202
Query: 363 tgcaggtcttgcccccggctccgaagctctcaacgaccgaccggtcgatcaggcttctca 422
|||||||| ||||||| || ||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 201 tgcaggtcctgccccctgccccgaagctctccacgacggaccgatcgatcaggcttctca 142
Query: 423 gggatatcttgccgttcgagatgtccgtgtcgacaaatcctgcaaatgtcgggcggtaca 482
| ||||||||||| || | ||||| ||||| ||||| ||||| || ||||| ||| |
Sbjct: 141 gagatatcttgcccttggctatgtcagtgtcaacaaagcctgcgaaggtcggcttgtata 82
Query: 483 ggttcgggttcagggacgacttggtagggtcggtgcacatgagcaccacgggctt 537
||||||||||||| || ||| |||| || |||| ||||||||| || ||||||||
Sbjct: 81 ggttcgggttcagagatgacatggttggatcggagcacatgaggacgacgggctt 27
>gb|BF625535.2|BF625535 HVSMEa0011C02f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0011C02f, mRNA sequence
Length = 641
Score = 190 bits (96), Expect = 1e-046
Identities = 168/192 (87%)
Strand = Plus / Minus
Query: 1667 gccggctctagcgccacccagttgatgaggtctcgcgacaccgagtgcgcccacacgatg 1726
|||||||| ||||||| ||||||||||||||| || ||||||||||||||||| | ||||
Sbjct: 349 gccggctccagcgccatccagttgatgaggtcgcgggacaccgagtgcgcccagatgatg 290
Query: 1727 ttgccccatacggcgcccttgggattgtattggtagaagaaatggtaccaccccttgtag 1786
|||||||| || ||||||||||| ||||| |||||||| || |||||||| |||||||||
Sbjct: 289 ttgccccacaccgcgcccttggggttgtactggtagaacaagtggtaccatcccttgtag 230
Query: 1787 tacatgggcgcgttgggatcattgatccagttcttggggggctggaagtggtaccccgtc 1846
|| | ||| | || ||||| |||||||||||| ||||||| ||||||||||| ||||||
Sbjct: 229 tagagcggcccatttggatcgttgatccagttcatggggggttggaagtggtagcccgtc 170
Query: 1847 ctgagcaggggg 1858
| ||||||||||
Sbjct: 169 cggagcaggggg 158
Score = 83.8 bits (42), Expect = 2e-014
Identities = 84/98 (85%)
Strand = Plus / Minus
Query: 1415 gtggtcgggtcgcggaactgcgtcacgttgatgccgccctcggggacgatgacggggttg 1474
|||||||||||||||||||| || |||| |||||| |||| || ||| || |||||||
Sbjct: 598 gtggtcgggtcgcggaactgggtggcgttcatgccggcctccggcacggcgatggggttg 539
Query: 1475 tgcgagggcttcacccactcccggagcagcgggtccga 1512
| | |||||| ||||||||||||||||||||||||||
Sbjct: 538 tacccgggcttgacccactcccggagcagcgggtccga 501
>gb|BE559434.1|BE559434 HV_CEb0024K20f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024K20f, mRNA sequence
Length = 513
Score = 190 bits (96), Expect = 1e-046
Identities = 168/192 (87%)
Strand = Plus / Minus
Query: 1667 gccggctctagcgccacccagttgatgaggtctcgcgacaccgagtgcgcccacacgatg 1726
|||||||| ||||||| ||||||||||||||| || ||||||||||||||||| | ||||
Sbjct: 401 gccggctccagcgccatccagttgatgaggtcgcgggacaccgagtgcgcccagatgatg 342
Query: 1727 ttgccccatacggcgcccttgggattgtattggtagaagaaatggtaccaccccttgtag 1786
|||||||| || ||||||||||| ||||| |||||||| || |||||||| |||||||||
Sbjct: 341 ttgccccacaccgcgcccttggggttgtactggtagaacaagtggtaccatcccttgtag 282
Query: 1787 tacatgggcgcgttgggatcattgatccagttcttggggggctggaagtggtaccccgtc 1846
|| | ||| | || ||||| |||||||||||| ||||||| ||||||||||| ||||||
Sbjct: 281 tagagcggcccatttggatcgttgatccagttcatggggggttggaagtggtagcccgtc 222
Query: 1847 ctgagcaggggg 1858
| ||||||||||
Sbjct: 221 cggagcaggggg 210
>gb|BF264866.2|BF264866 HV_CEa0010J14f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0010J14f, mRNA sequence
Length = 835
Score = 190 bits (96), Expect = 1e-046
Identities = 168/192 (87%)
Strand = Plus / Minus
Query: 1667 gccggctctagcgccacccagttgatgaggtctcgcgacaccgagtgcgcccacacgatg 1726
|||||||| ||||||| ||||||||||||||| || ||||||||||||||||| | ||||
Sbjct: 261 gccggctccagcgccatccagttgatgaggtcgcgggacaccgagtgcgcccagatgatg 202
Query: 1727 ttgccccatacggcgcccttgggattgtattggtagaagaaatggtaccaccccttgtag 1786
|||||||| || ||||||||||| ||||| |||||||| || |||||||| |||||||||
Sbjct: 201 ttgccccacaccgcgcccttggggttgtactggtagaacaagtggtaccatcccttgtag 142
Query: 1787 tacatgggcgcgttgggatcattgatccagttcttggggggctggaagtggtaccccgtc 1846
|| | ||| | || ||||| |||||||||||| ||||||| ||||||||||| ||||||
Sbjct: 141 tagagcggcccatttggatcgttgatccagttcatggggggttggaagtggtagcccgtc 82
Query: 1847 ctgagcaggggg 1858
| ||||||||||
Sbjct: 81 cggagcaggggg 70
Score = 91.7 bits (46), Expect = 9e-017
Identities = 91/106 (85%)
Strand = Plus / Minus
Query: 1407 gccaggccgtggtcgggtcgcggaactgcgtcacgttgatgccgccctcggggacgatga 1466
||||||| |||||||||||||||||||| || |||| |||||| |||| || ||| ||
Sbjct: 518 gccaggcggtggtcgggtcgcggaactgggtggcgttcatgccggcctccggcacggcga 459
Query: 1467 cggggttgtgcgagggcttcacccactcccggagcagcgggtccga 1512
|||||||| | |||||| ||||||||||||||||||||||||||
Sbjct: 458 tggggttgtacccgggcttgacccactcccggagcagcgggtccga 413
Score = 40.1 bits (20), Expect = 0.28
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 1241 aagtcagggcactcccacatccccgtgggcgccgagtgcagcgg 1284
||||| |||||||||||||| || || |||||||||| |||||
Sbjct: 678 aagtcggggcactcccacatgccggtcagcgccgagtggagcgg 635
>gb|BE214358.2|BE214358 HV_CEb0003D11f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003D11f, mRNA sequence
Length = 701
Score = 190 bits (96), Expect = 1e-046
Identities = 168/192 (87%)
Strand = Plus / Minus
Query: 1667 gccggctctagcgccacccagttgatgaggtctcgcgacaccgagtgcgcccacacgatg 1726
|||||||| ||||||| ||||||||||||||| || ||||||||||||||||| | ||||
Sbjct: 389 gccggctccagcgccatccagttgatgaggtcgcgggacaccgagtgcgcccagatgatg 330
Query: 1727 ttgccccatacggcgcccttgggattgtattggtagaagaaatggtaccaccccttgtag 1786
|||||||| || ||||||||||| ||||| |||||||| || |||||||| |||||||||
Sbjct: 329 ttgccccacaccgcgcccttggggttgtactggtagaacaagtggtaccatcccttgtag 270
Query: 1787 tacatgggcgcgttgggatcattgatccagttcttggggggctggaagtggtaccccgtc 1846
|| | ||| | || ||||| |||||||||||| ||||||| ||||||||||| ||||||
Sbjct: 269 tagagcggcccatttggatcgttgatccagttcatggggggttggaagtggtagcccgtc 210
Query: 1847 ctgagcaggggg 1858
| ||||||||||
Sbjct: 209 cggagcaggggg 198
Score = 60.0 bits (30), Expect = 3e-007
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 1415 gtggtcgggtcgcggaactgcgtcacgttgatgccgccctcggggacgatgacggggttg 1474
|||||||| |||||||| || | |||| |||||| |||| || ||| || |||||||
Sbjct: 638 gtggtcggttcgcggaattggggggcgttcatgccggcctccggcacggcgatggggttg 579
Query: 1475 tgcgagggcttcacccactcccggagcagcgggtccga 1512
| | |||||| ||||||||||||||||||||||||||
Sbjct: 578 tacccgggcttgacccactcccggagcagcgggtccga 541
>gb|BI778225.2|BI778225 EBro07_SQ002_J10_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ002_J10 5', mRNA sequence
Length = 695
Score = 190 bits (96), Expect = 1e-046
Identities = 168/192 (87%)
Strand = Plus / Minus
Query: 1667 gccggctctagcgccacccagttgatgaggtctcgcgacaccgagtgcgcccacacgatg 1726
|||||||| ||||||| ||||||||||||||| || ||||||||||||||||| | ||||
Sbjct: 287 gccggctccagcgccatccagttgatgaggtcgcgggacaccgagtgcgcccagatgatg 228
Query: 1727 ttgccccatacggcgcccttgggattgtattggtagaagaaatggtaccaccccttgtag 1786
|||||||| || ||||||||||| ||||| |||||||| || |||||||| |||||||||
Sbjct: 227 ttgccccacaccgcgcccttggggttgtactggtagaacaagtggtaccatcccttgtag 168
Query: 1787 tacatgggcgcgttgggatcattgatccagttcttggggggctggaagtggtaccccgtc 1846
|| | ||| | || ||||| |||||||||||| ||||||| ||||||||||| ||||||
Sbjct: 167 tagagcggcccatttggatcgttgatccagttcatggggggttggaagtggtagcccgtc 108
Query: 1847 ctgagcaggggg 1858
| ||||||||||
Sbjct: 107 cggagcaggggg 96
Score = 91.7 bits (46), Expect = 9e-017
Identities = 91/106 (85%)
Strand = Plus / Minus
Query: 1407 gccaggccgtggtcgggtcgcggaactgcgtcacgttgatgccgccctcggggacgatga 1466
||||||| |||||||||||||||||||| || |||| |||||| |||| || ||| ||
Sbjct: 544 gccaggcggtggtcgggtcgcggaactgggtggcgttcatgccggcctccggcacggcga 485
Query: 1467 cggggttgtgcgagggcttcacccactcccggagcagcgggtccga 1512
|||||||| | |||||| ||||||||||||||||||||||||||
Sbjct: 484 tggggttgtacccgggcttgacccactcccggagcagcgggtccga 439
>gb|BU973477.1|BU973477 HB25B07r BC Hordeum vulgare subsp. vulgare cDNA clone HB25B07
5-PRIME, mRNA sequence
Length = 477
Score = 184 bits (93), Expect = 8e-045
Identities = 237/285 (83%)
Strand = Plus / Minus
Query: 253 catctcccacgcggtgagacgggacaccttgacgtgcgccctcccgttgttgaacacgta 312
|||||||||||| ||||| |||||||||| || | || | ||||||||||| ||||
Sbjct: 477 catctcccacgccgtgagctccgacaccttgatgtccaccttgccgttgttgaagacgtg 418
Query: 313 gaggcgagcgtccttgccgatggccagcgacgggtagaccctggagaggatgcaggtctt 372
|||||||||| |||||| | || |||| ||||||||||| |||||||||||||||| |
Sbjct: 417 aaggcgagcgttcttgcccagcgcgagcgtcgggtagacccgggagaggatgcaggtcct 358
Query: 373 gcccccggctccgaagctctcaacgaccgaccggtcgatcaggcttctcagggatatctt 432
|||||| || ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 357 gccccctgccccgaagctctccacgacggaccgatcgatcaggcttctcagagatatctt 298
Query: 433 gccgttcgagatgtccgtgtcgacaaatcctgcaaatgtcgggcggtacaggttcgggtt 492
||| || | ||||| ||||| ||||| ||||| || ||||| ||| |||||||||||
Sbjct: 297 gcccttggctatgtcagtgtcaacaaagcctgcgaaggtcggcttgtataggttcgggtt 238
Query: 493 cagggacgacttggtagggtcggtgcacatgagcaccacgggctt 537
||| || ||| |||| || |||| ||||||||| || ||||||||
Sbjct: 237 cagagatgacatggttggatcggagcacatgaggacgacgggctt 193
Score = 54.0 bits (27), Expect = 2e-005
Identities = 120/151 (79%)
Strand = Plus / Minus
Query: 548 gcgggcttgaacaccctgaagaacaccgcggttctctccttgcggttggcggaggccagc 607
|||| ||||||||||| |||||| ||||| || |||||| | |||| ||||| |||
Sbjct: 167 gcggccttgaacacccggaagaagaccgccgtcttctcctccagcttggacgaggcgagc 108
Query: 608 acccacagcccgaacggccccacgccgcccctcacgtccgcgcgcttcacgccgcacagc 667
|||||||| ||||| || ||||||||||| ||||| || | | ||| || |||||||
Sbjct: 107 acccacaggccgaaggggcccacgccgccttccacgtgggcacccctcatgctgcacagc 48
Query: 668 ctctccgcgtcgtaggccagcgccgggtcca 698
||| ||||||| ||| |||||||||||||
Sbjct: 47 ttctgggcgtcgttggctagcgccgggtcca 17
>gb|BU996678.1|BU996678 HM14G07r HM Hordeum vulgare subsp. vulgare cDNA clone HM14G07
5-PRIME, mRNA sequence
Length = 540
Score = 180 bits (91), Expect = 1e-043
Identities = 220/263 (83%)
Strand = Plus / Minus
Query: 275 gacaccttgacgtgcgccctcccgttgttgaacacgtagaggcgagcgtccttgccgatg 334
|||||||||| || | || | ||||||||||| |||| |||||||||| |||||| |
Sbjct: 533 gacaccttgatgtccaccttgccgttgttgaagacgtgaaggcgagcgttcttgcccagc 474
Query: 335 gccagcgacgggtagaccctggagaggatgcaggtcttgcccccggctccgaagctctca 394
|| |||| ||||||||||| |||||||||||||||| ||||||| || |||||||||||
Sbjct: 473 gcgagcgtcgggtagacccgggagaggatgcaggtcctgccccctgccccgaagctctcc 414
Query: 395 acgaccgaccggtcgatcaggcttctcagggatatcttgccgttcgagatgtccgtgtcg 454
||||| ||||| ||||||||||||||||| ||||||||||| || | ||||| |||||
Sbjct: 413 acgacggaccgatcgatcaggcttctcagagatatcttgcccttggctatgtcagtgtca 354
Query: 455 acaaatcctgcaaatgtcgggcggtacaggttcgggttcagggacgacttggtagggtcg 514
||||| ||||| || ||||| ||| |||||||||||||| || ||| |||| || |||
Sbjct: 353 acaaagcctgcgaaggtcggcttgtataggttcgggttcagagatgacatggttggatcg 294
Query: 515 gtgcacatgagcaccacgggctt 537
| ||||||||| || ||||||||
Sbjct: 293 gagcacatgaggacgacgggctt 271
Score = 54.0 bits (27), Expect = 2e-005
Identities = 120/151 (79%)
Strand = Plus / Minus
Query: 548 gcgggcttgaacaccctgaagaacaccgcggttctctccttgcggttggcggaggccagc 607
|||| ||||||||||| |||||| ||||| || |||||| | |||| ||||| |||
Sbjct: 245 gcggccttgaacacccggaagaagaccgccgtcttctcctccagcttggacgaggcgagc 186
Query: 608 acccacagcccgaacggccccacgccgcccctcacgtccgcgcgcttcacgccgcacagc 667
|||||||| ||||| || ||||||||||| ||||| || | | ||| || |||||||
Sbjct: 185 acccacaggccgaaggggcccacgccgccttccacgtgggcacccctcatgctgcacagc 126
Query: 668 ctctccgcgtcgtaggccagcgccgggtcca 698
||| ||||||| ||| |||||||||||||
Sbjct: 125 ttctgggcgtcgttggctagcgccgggtcca 95
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 737 aagctcacctccacgtcagcctgtg 761
|||||||||||||||||||||||||
Sbjct: 62 aagctcacctccacgtcagcctgtg 38
>gb|BU996531.1|BU996531 HM13O15r HM Hordeum vulgare subsp. vulgare cDNA clone HM13O15
5-PRIME, mRNA sequence
Length = 481
Score = 168 bits (85), Expect = 5e-040
Identities = 166/193 (86%)
Strand = Plus / Minus
Query: 243 ccggcttcttcatctcccacgcggtgagacgggacaccttgacgtgcgccctcccgttgt 302
|||||||||||||||||||||| ||||| |||||||||| || | || | |||||||
Sbjct: 202 ccggcttcttcatctcccacgccgtgagctccgacaccttgatgtccaccttgccgttgt 143
Query: 303 tgaacacgtagaggcgagcgtccttgccgatggccagcgacgggtagaccctggagagga 362
|||| |||| |||||||||| |||||| | || |||| ||||||||||| ||||||||
Sbjct: 142 tgaagacgtgaaggcgagcgttcttgcccagcgcgagcgtcgggtagacccgggagagga 83
Query: 363 tgcaggtcttgcccccggctccgaagctctcaacgaccgaccggtcgatcaggcttctca 422
|||||||| ||||||| || ||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 82 tgcaggtcctgccccctgccccgaagctctccacgacggaccgatcgatcaggcttctca 23
Query: 423 gggatatcttgcc 435
| |||||||||||
Sbjct: 22 gagatatcttgcc 10
>gb|BQ468801.1|BQ468801 HM02G04r HM Hordeum vulgare subsp. vulgare cDNA clone HM02G04
5-PRIME, mRNA sequence
Length = 502
Score = 161 bits (81), Expect = 1e-037
Identities = 126/141 (89%)
Strand = Plus / Minus
Query: 1044 cgtagcgcaggcggtgctcgtcgccggcggggtcgtccggcacgtaccgctcggccctcg 1103
||||||||||| ||||||||||||||||||||| |||||||||||||||||| | | |
Sbjct: 502 cgtagcgcaggtggtgctcgtcgccggcggggttgtccggcacgtaccgctccgtcttgc 443
Query: 1104 ggtggtacgtgcccacggtgtagtagtcgtaccgccggaggtcgaggctgttcttgagca 1163
||| ||| ||||| ||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 442 ggtcgtaggtgccgacggtgtagtagtcgtagcggcgcaggtcgaggctgttcttgagca 383
Query: 1164 cgtgcttgacccttgggccgg 1184
||||||| ||||| |||||||
Sbjct: 382 cgtgcttcaccctggggccgg 362
Score = 149 bits (75), Expect = 4e-034
Identities = 105/115 (91%)
Strand = Plus / Minus
Query: 1232 accgggtagaagtcagggcactcccacatccccgtgggcgccgagtgcagcggccgccgc 1291
|||||||| | ||| ||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 311 accgggtacaggtccgggcactcccacatccccgtgggcgccgagtgcagcggcttcctc 252
Query: 1292 acccgcctccaccgccggaagtcgcggctacggtacacgtacgccacgccgcggg 1346
|||||| |||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 251 acccgcgtccaccgcatgaagtcgcggctccggtacacgtacgccacgccgcggg 197
Score = 83.8 bits (42), Expect = 2e-014
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 1412 gccgtggtcgggtcgcggaactgcgtcacgttgatgccgccctcggggacgatgacgggg 1471
||||| |||||||| |||||||| || |||||||||||||||| || ||||||| |||
Sbjct: 143 gccgtcgtcgggtcccggaactgggtggcgttgatgccgccctccggcacgatgatcggg 84
Query: 1472 ttgtgcgagggcttcacccactcccggagcagcgggtccgac 1513
||| | |||||||||||||| ||||||||||||||||||
Sbjct: 83 ttgccccgcggcttcacccactcgcggagcagcgggtccgac 42
>gb|BQ764136.1|BQ764136 EBro03_SQ006_J10_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_J10 5', mRNA sequence
Length = 725
Score = 147 bits (74), Expect = 2e-033
Identities = 244/300 (81%), Gaps = 3/300 (1%)
Strand = Plus / Minus
Query: 860 ggccactgcagcagctgcttcccactggggtccagccacaccgtccttggaatcgcctgg 919
|||||||||||||||||||| || || || |||||||| | | |||| || || || |||
Sbjct: 300 ggccactgcagcagctgcttgccgctcggatccagccatatcttcctcgggattgcgtgg 241
Query: 920 attccagcccagcctttagccacatcgtcggcggcggtgtcggactcgttagcccagccc 979
|| || ||||| ||||| || |||| |||| || ||||||||||||| ||||||||
Sbjct: 240 atgccggcccatcctttggcgttgtcgtgggcgacgctgtcggactcgttggcccagccg 181
Query: 980 cacaggatgcggcgccgcttggccgggtcgtagaacgtcttggacgcgtagaagttgccg 1039
||| | |||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 180 agcagcacgcggcggttcttggccgggtcgtagaaggtcttggacgcgtagaagttgccg 121
Query: 1040 tagtcgtagcgcaggcggtgct---cgtcgccggcggggtcgtccggcacgtaccgctcg 1096
|||||||| | || || || | ||||||||| ||||| ||| || |||||||||||
Sbjct: 120 tagtcgtactggagccgctggtagacgtcgccggtggggttgtcggggacgtaccgctcc 61
Query: 1097 gccctcgggtggtacgtgcccacggtgtagtagtcgtaccgccggaggtcgaggctgttc 1156
| ||| || ||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 60 gtcctgttgttgtaggtgcccacggtgtagtagtcgtagcgggtgaggtcgaggctgttc 1
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 734 tcgaagctcacctccacgtcag 755
||||||||||||||||||||||
Sbjct: 426 tcgaagctcacctccacgtcag 405
>gb|AL503000.1|AL503000 AL503000 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09G14u 3', mRNA sequence
Length = 595
Score = 119 bits (60), Expect = 4e-025
Identities = 156/188 (82%)
Strand = Plus / Plus
Query: 245 ggcttcttcatctcccacgcggtgagacgggacaccttgacgtgcgccctcccgttgttg 304
|||||||||||||||||||| |||| |||| ||||||| | || | ||| ||||||
Sbjct: 274 ggcttcttcatctcccacgccttgagttgggataccttgatatccgtctccccattgttg 333
Query: 305 aacacgtagaggcgagcgtccttgccgatggccagcgacgggtagaccctggagaggatg 364
||||||||||| | ||||| || ||||| |||| |||||||| || || |||||||||
Sbjct: 334 aacacgtagagatgcgcgtctttcccgatcgccatggacgggtacactctcgagaggatg 393
Query: 365 caggtcttgcccccggctccgaagctctcaacgaccgaccggtcgatcaggcttctcagg 424
|||||||| || ||||| |||||||||||||| || || |||||||||| |||||||| |
Sbjct: 394 caggtcttccctccggcgccgaagctctcaaccacggaacggtcgatcaagcttctcaag 453
Query: 425 gatatctt 432
|| |||||
Sbjct: 454 gagatctt 461
>gb|BF064963.3|BF064963 HV_CEb0022D03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022D03f, mRNA sequence
Length = 690
Score = 119 bits (60), Expect = 4e-025
Identities = 156/188 (82%)
Strand = Plus / Minus
Query: 245 ggcttcttcatctcccacgcggtgagacgggacaccttgacgtgcgccctcccgttgttg 304
|||||||||||||||||||| |||| |||| ||||||| | || | ||| ||||||
Sbjct: 413 ggcttcttcatctcccacgccttgagttgggataccttgatatccgtctccccattgttg 354
Query: 305 aacacgtagaggcgagcgtccttgccgatggccagcgacgggtagaccctggagaggatg 364
||||||||||| | ||||| || ||||| |||| |||||||| || || |||||||||
Sbjct: 353 aacacgtagagatgcgcgtctttcccgatcgccatggacgggtacactctcgagaggatg 294
Query: 365 caggtcttgcccccggctccgaagctctcaacgaccgaccggtcgatcaggcttctcagg 424
|||||||| || ||||| |||||||||||||| || || |||||||||| |||||||| |
Sbjct: 293 caggtcttccctccggcgccgaagctctcaaccacggaacggtcgatcaagcttctcaag 234
Query: 425 gatatctt 432
|| |||||
Sbjct: 233 gagatctt 226
>gb|AV930059.1|AV930059 AV930059 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17l01 3', mRNA sequence
Length = 502
Score = 119 bits (60), Expect = 4e-025
Identities = 156/188 (82%)
Strand = Plus / Plus
Query: 245 ggcttcttcatctcccacgcggtgagacgggacaccttgacgtgcgccctcccgttgttg 304
|||||||||||||||||||| |||| |||| ||||||| | || | ||| ||||||
Sbjct: 243 ggcttcttcatctcccacgccttgagttgggataccttgatatccgtctccccattgttg 302
Query: 305 aacacgtagaggcgagcgtccttgccgatggccagcgacgggtagaccctggagaggatg 364
||||||||||| | ||||| || ||||| |||| |||||||| || || |||||||||
Sbjct: 303 aacacgtagagatgcgcgtctttcccgatcgccatggacgggtacactctcgagaggatg 362
Query: 365 caggtcttgcccccggctccgaagctctcaacgaccgaccggtcgatcaggcttctcagg 424
|||||||| || ||||| |||||||||||||| || || |||||||||| |||||||| |
Sbjct: 363 caggtcttccctccggcgccgaagctctcaaccacggaacggtcgatcaagcttctcaag 422
Query: 425 gatatctt 432
|| |||||
Sbjct: 423 gagatctt 430
>gb|AV930060.1|AV930060 AV930060 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17l02 3', mRNA sequence
Length = 425
Score = 119 bits (60), Expect = 4e-025
Identities = 156/188 (82%)
Strand = Plus / Plus
Query: 245 ggcttcttcatctcccacgcggtgagacgggacaccttgacgtgcgccctcccgttgttg 304
|||||||||||||||||||| |||| |||| ||||||| | || | ||| ||||||
Sbjct: 218 ggcttcttcatctcccacgccttgagttgggataccttgatatccgtctccccattgttg 277
Query: 305 aacacgtagaggcgagcgtccttgccgatggccagcgacgggtagaccctggagaggatg 364
||||||||||| | ||||| || ||||| |||| |||||||| || || |||||||||
Sbjct: 278 aacacgtagagatgcgcgtctttcccgatcgccatggacgggtacactctcgagaggatg 337
Query: 365 caggtcttgcccccggctccgaagctctcaacgaccgaccggtcgatcaggcttctcagg 424
|||||||| || ||||| |||||||||||||| || || |||||||||| |||||||| |
Sbjct: 338 caggtcttccctccggcgccgaagctctcaaccacggaacggtcgatcaagcttctcaag 397
Query: 425 gatatctt 432
|| |||||
Sbjct: 398 gagatctt 405
>gb|AJ434754.1|AJ434754 AJ434754 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200078A03F1, mRNA sequence
Length = 502
Score = 119 bits (60), Expect = 4e-025
Identities = 156/188 (82%)
Strand = Plus / Minus
Query: 245 ggcttcttcatctcccacgcggtgagacgggacaccttgacgtgcgccctcccgttgttg 304
|||||||||||||||||||| |||| |||| ||||||| | || | ||| ||||||
Sbjct: 223 ggcttcttcatctcccacgccttgagttgggataccttgatatccgtctccccattgttg 164
Query: 305 aacacgtagaggcgagcgtccttgccgatggccagcgacgggtagaccctggagaggatg 364
||||||||||| | ||||| || ||||| |||| |||||||| || || |||||||||
Sbjct: 163 aacacgtagagatgcgcgtctttcccgatcgccatggacgggtacactctcgagaggatg 104
Query: 365 caggtcttgcccccggctccgaagctctcaacgaccgaccggtcgatcaggcttctcagg 424
|||||||| || ||||| |||||||||||||| || || |||||||||| |||||||| |
Sbjct: 103 caggtcttccctccggcgccgaagctctcaaccacggaacggtcgatcaagcttctcaag 44
Query: 425 gatatctt 432
|| |||||
Sbjct: 43 gagatctt 36
>gb|BJ449827.1|BJ449827 BJ449827 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26o06 5', mRNA sequence
Length = 600
Score = 119 bits (60), Expect = 4e-025
Identities = 156/188 (82%)
Strand = Plus / Minus
Query: 245 ggcttcttcatctcccacgcggtgagacgggacaccttgacgtgcgccctcccgttgttg 304
|||||||||||||||||||| |||| |||| ||||||| | || | ||| ||||||
Sbjct: 343 ggcttcttcatctcccacgccttgagttgggataccttgatatccgtctccccattgttg 284
Query: 305 aacacgtagaggcgagcgtccttgccgatggccagcgacgggtagaccctggagaggatg 364
||||||||||| | ||||| || ||||| |||| |||||||| || || |||||||||
Sbjct: 283 aacacgtagagatgcgcgtctttcccgatcgccatggacgggtacactctcgagaggatg 224
Query: 365 caggtcttgcccccggctccgaagctctcaacgaccgaccggtcgatcaggcttctcagg 424
|||||||| || ||||| |||||||||||||| || || |||||||||| |||||||| |
Sbjct: 223 caggtcttccctccggcgccgaagctctcaaccacggaacggtcgatcaagcttctcaag 164
Query: 425 gatatctt 432
|| |||||
Sbjct: 163 gagatctt 156
>gb|BJ457246.1|BJ457246 BJ457246 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26o06 3', mRNA sequence
Length = 581
Score = 119 bits (60), Expect = 4e-025
Identities = 156/188 (82%)
Strand = Plus / Plus
Query: 245 ggcttcttcatctcccacgcggtgagacgggacaccttgacgtgcgccctcccgttgttg 304
|||||||||||||||||||| |||| |||| ||||||| | || | ||| ||||||
Sbjct: 240 ggcttcttcatctcccacgccttgagttgggataccttgatatccgtctccccattgttg 299
Query: 305 aacacgtagaggcgagcgtccttgccgatggccagcgacgggtagaccctggagaggatg 364
||||||||||| | ||||| || ||||| |||| |||||||| || || |||||||||
Sbjct: 300 aacacgtagagatgcgcgtctttcccgatcgccatggacgggtacactctcgagaggatg 359
Query: 365 caggtcttgcccccggctccgaagctctcaacgaccgaccggtcgatcaggcttctcagg 424
|||||||| || ||||| |||||||||||||| || || |||||||||| |||||||| |
Sbjct: 360 caggtcttccctccggcgccgaagctctcaaccacggaacggtcgatcaagcttctcaag 419
Query: 425 gatatctt 432
|| |||||
Sbjct: 420 gagatctt 427
>gb|BJ467660.1|BJ467660 BJ467660 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29e15 3', mRNA sequence
Length = 602
Score = 119 bits (60), Expect = 4e-025
Identities = 156/188 (82%)
Strand = Plus / Plus
Query: 245 ggcttcttcatctcccacgcggtgagacgggacaccttgacgtgcgccctcccgttgttg 304
|||||||||||||||||||| |||| |||| ||||||| | || | ||| ||||||
Sbjct: 248 ggcttcttcatctcccacgccttgagttgggataccttgatatccgtctccccattgttg 307
Query: 305 aacacgtagaggcgagcgtccttgccgatggccagcgacgggtagaccctggagaggatg 364
||||||||||| | ||||| || ||||| |||| |||||||| || || |||||||||
Sbjct: 308 aacacgtagagatgcgcgtctttcccgatcgccatggacgggtacactctcgagaggatg 367
Query: 365 caggtcttgcccccggctccgaagctctcaacgaccgaccggtcgatcaggcttctcagg 424
|||||||| || ||||| |||||||||||||| || || |||||||||| |||||||| |
Sbjct: 368 caggtcttccctccggcgccgaagctctcaaccacggaacggtcgatcaagcttctcaag 427
Query: 425 gatatctt 432
|| |||||
Sbjct: 428 gagatctt 435
>gb|BQ760946.1|BQ760946 EBro03_SQ003_O23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_O23 5', mRNA sequence
Length = 484
Score = 119 bits (60), Expect = 4e-025
Identities = 156/188 (82%)
Strand = Plus / Minus
Query: 245 ggcttcttcatctcccacgcggtgagacgggacaccttgacgtgcgccctcccgttgttg 304
|||||||||||||||||||| |||| |||| ||||||| | || | ||| ||||||
Sbjct: 222 ggcttcttcatctcccacgccttgagttgggataccttgatatccgtctccccattgttg 163
Query: 305 aacacgtagaggcgagcgtccttgccgatggccagcgacgggtagaccctggagaggatg 364
||||||||||| | ||||| || ||||| |||| |||||||| || || |||||||||
Sbjct: 162 aacacgtagagatgcgcgtctttcccgatcgccatggacgggtacactctcgagaggatg 103
Query: 365 caggtcttgcccccggctccgaagctctcaacgaccgaccggtcgatcaggcttctcagg 424
|||||||| || ||||| |||||||||||||| || || |||||||||| |||||||| |
Sbjct: 102 caggtcttccctccggcgccgaagctctcaaccacggaacggtcgatcaagcttctcaag 43
Query: 425 gatatctt 432
|| |||||
Sbjct: 42 gagatctt 35
>gb|BQ762965.1|BQ762965 EBro02_SQ006_O16_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ006_O16 5', mRNA sequence
Length = 557
Score = 115 bits (58), Expect = 6e-024
Identities = 154/186 (82%)
Strand = Plus / Minus
Query: 860 ggccactgcagcagctgcttcccactggggtccagccacaccgtccttggaatcgcctgg 919
|||||||||||||||||||| || || || |||||||| | | |||| || || || |||
Sbjct: 186 ggccactgcagcagctgcttgccgctcggatccagccatatcttcctcgggattgcgtgg 127
Query: 920 attccagcccagcctttagccacatcgtcggcggcggtgtcggactcgttagcccagccc 979
|| || ||||| ||||| || |||| |||| || ||||||||||||| ||||||||
Sbjct: 126 atgccggcccatcctttggcgttgtcgtgggcgacgctgtcggactcgttggcccagccg 67
Query: 980 cacaggatgcggcgccgcttggccgggtcgtagaacgtcttggacgcgtagaagttgccg 1039
||| | |||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 66 agcagcacgcggcggttcttggccgggtcgtagaaggtcttggacgcgtagaagttgccg 7
Query: 1040 tagtcg 1045
||||||
Sbjct: 6 tagtcg 1
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 734 tcgaagctcacctccacgtcag 755
||||||||||||||||||||||
Sbjct: 312 tcgaagctcacctccacgtcag 291
>gb|AL505748.1|AL505748 AL505748 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09G14V 5', mRNA sequence
Length = 465
Score = 111 bits (56), Expect = 9e-023
Identities = 155/188 (82%)
Strand = Plus / Minus
Query: 860 ggccactgcagcagctgcttcccactggggtccagccacaccgtccttggaatcgcctgg 919
|||||||||||||||||||| || || || |||||||| | | |||| || || || |||
Sbjct: 200 ggccactgcagcagctgcttgccgctcggatccagccatatcttcctcgggattgcgtgg 141
Query: 920 attccagcccagcctttagccacatcgtcggcggcggtgtcggactcgttagcccagccc 979
|| || ||||| || || || |||| |||| || ||||||||||||| ||||||||
Sbjct: 140 atgccggcccatcccttggcgttgtcgtgggcgacgctgtcggactcgttggcccagccg 81
Query: 980 cacaggatgcggcgccgcttggccgggtcgtagaacgtcttggacgcgtagaagttgccg 1039
||| | |||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 80 agcagcacgcggcggttcttggccgggtcgtagaaggtcttggacgcgtagaagttgccg 21
Query: 1040 tagtcgta 1047
||||||||
Sbjct: 20 tagtcgta 13
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 734 tcgaagctcacctccacgtcag 755
||||||||||||||||||||||
Sbjct: 326 tcgaagctcacctccacgtcag 305
>gb|BF267660.3|BF267660 HV_CEa0018I16f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018I16f, mRNA sequence
Length = 519
Score = 111 bits (56), Expect = 9e-023
Identities = 155/188 (82%)
Strand = Plus / Minus
Query: 860 ggccactgcagcagctgcttcccactggggtccagccacaccgtccttggaatcgcctgg 919
|||||||||||||||||||| || || || |||||||| | | |||| || || || |||
Sbjct: 235 ggccactgcagcagctgcttgccgctcggatccagccatatcttcctcgggattgcgtgg 176
Query: 920 attccagcccagcctttagccacatcgtcggcggcggtgtcggactcgttagcccagccc 979
|| || ||||| || || || |||| |||| || ||||||||||||| ||||||||
Sbjct: 175 atgccggcccatcccttggcgttgtcgtgggcgacgctgtcggactcgttggcccagccg 116
Query: 980 cacaggatgcggcgccgcttggccgggtcgtagaacgtcttggacgcgtagaagttgccg 1039
||| | |||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 115 agcagcacgcggcggttcttggccgggtcgtagaaggtcttggacgcgtagaagttgccg 56
Query: 1040 tagtcgta 1047
||||||||
Sbjct: 55 tagtcgta 48
>gb|AV924971.1|AV924971 AV924971 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd17l01 5', mRNA sequence
Length = 577
Score = 111 bits (56), Expect = 9e-023
Identities = 155/188 (82%)
Strand = Plus / Minus
Query: 860 ggccactgcagcagctgcttcccactggggtccagccacaccgtccttggaatcgcctgg 919
|||||||||||||||||||| || || || |||||||| | | |||| || || || |||
Sbjct: 237 ggccactgcagcagctgcttgccgctcggatccagccatatcttcctcgggattgcgtgg 178
Query: 920 attccagcccagcctttagccacatcgtcggcggcggtgtcggactcgttagcccagccc 979
|| || ||||| || || || |||| |||| || ||||||||||||| ||||||||
Sbjct: 177 atgccggcccatcccttggcgttgtcgtgggcgacgctgtcggactcgttggcccagccg 118
Query: 980 cacaggatgcggcgccgcttggccgggtcgtagaacgtcttggacgcgtagaagttgccg 1039
||| | |||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 117 agcagcacgcggcggttcttggccgggtcgtagaaggtcttggacgcgtagaagttgccg 58
Query: 1040 tagtcgta 1047
||||||||
Sbjct: 57 tagtcgta 50
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 734 tcgaagctcacctccacgtcag 755
||||||||||||||||||||||
Sbjct: 363 tcgaagctcacctccacgtcag 342
>gb|AV924972.1|AV924972 AV924972 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd17l02 5', mRNA sequence
Length = 549
Score = 111 bits (56), Expect = 9e-023
Identities = 155/188 (82%)
Strand = Plus / Minus
Query: 860 ggccactgcagcagctgcttcccactggggtccagccacaccgtccttggaatcgcctgg 919
|||||||||||||||||||| || || || |||||||| | | |||| || || || |||
Sbjct: 276 ggccactgcagcagctgcttgccgctcggatccagccatatcttcctcgggattgcgtgg 217
Query: 920 attccagcccagcctttagccacatcgtcggcggcggtgtcggactcgttagcccagccc 979
|| || ||||| || || || |||| |||| || ||||||||||||| ||||||||
Sbjct: 216 atgccggcccatcccttggcgttgtcgtgggcgacgctgtcggactcgttggcccagccg 157
Query: 980 cacaggatgcggcgccgcttggccgggtcgtagaacgtcttggacgcgtagaagttgccg 1039
||| | |||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 156 agcagcacgcggcggttcttggccgggtcgtagaaggtcttggacgcgtagaagttgccg 97
Query: 1040 tagtcgta 1047
||||||||
Sbjct: 96 tagtcgta 89
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 734 tcgaagctcacctccacgtcag 755
||||||||||||||||||||||
Sbjct: 402 tcgaagctcacctccacgtcag 381
>gb|BF260173.2|BF260173 HVSMEf0021E20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021E20f, mRNA sequence
Length = 790
Score = 101 bits (51), Expect = 9e-020
Identities = 113/134 (84%)
Strand = Plus / Minus
Query: 299 ttgttgaacacgtagaggcgagcgtccttgccgatggccagcgacgggtagaccctggag 358
||||||||||||||||| | ||||| || ||||| |||| ||||||| || || |||
Sbjct: 484 ttgttgaacacgtagagatgcgcgtctttcccgatcgccatgnacgggtacactctcgag 425
Query: 359 aggatgcaggtcttgcccccggctccgaagctctcaacgaccgaccggtcgatcaggctt 418
|||||||||||||| || ||||| |||||||||||||| || || |||||||||| ||||
Sbjct: 424 aggatgcaggtcttccctccggcgccgaagctctcaaccacggaacggtcgatcaagctt 365
Query: 419 ctcagggatatctt 432
|||| ||| |||||
Sbjct: 364 ctcaaggagatctt 351
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 734 tcgaagctcacctccacgtcag 755
||||||||||||||||||||||
Sbjct: 58 tcgaagctcacctccacgtcag 37
>gb|BI959253.1|BI959253 HVSMEn0018O17f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0018O17f,
mRNA sequence
Length = 647
Score = 81.8 bits (41), Expect = 8e-014
Identities = 101/121 (83%)
Strand = Plus / Minus
Query: 1725 tgttgccccatacggcgcccttgggattgtattggtagaagaaatggtaccaccccttgt 1784
|||||||||| | |||||| | ||| ||||| |||||||||| ||||||||||||||||
Sbjct: 575 tgttgccccaaatggcgccgtcggggttgtactggtagaagaggtggtaccaccccttgt 516
Query: 1785 agtacatgggcgcgttgggatcattgatccagttcttggggggctggaagtggtaccccg 1844
|||| | || ||||||| || || ||||||||||| ||||||||||||| ||||||
Sbjct: 515 agtaaaccggaccgttggggtcgttcatccagttcttctcgggctggaagtggaaccccg 456
Query: 1845 t 1845
|
Sbjct: 455 t 455
>gb|BI960418.1|BI960418 HVSMEn0024I13f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0024I13f,
mRNA sequence
Length = 660
Score = 81.8 bits (41), Expect = 8e-014
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 1725 tgttgccccatacggcgcccttgggattgtattggtagaagaaatggtaccaccccttgt 1784
|||||||||| | |||||| | ||| ||||||||||||||| |||||||| |||||||
Sbjct: 599 tgttgccccagatggcgccgtcgggggtgtattggtagaagaggtggtaccatcccttgt 540
Query: 1785 agtacatgggcgcgttgggatcattgatccagttcttggggggctggaagtgg 1837
|||||| ||| ||||||| || || ||||||||||| |||||||||||||
Sbjct: 539 agtacacgggaccgttggggtcgttcatccagttcttctcgggctggaagtgg 487
>gb|BQ754305.1|BQ754305 EBca01_SQ003_I07_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ003_I07 5', mRNA sequence
Length = 585
Score = 81.8 bits (41), Expect = 8e-014
Identities = 101/121 (83%)
Strand = Plus / Minus
Query: 1725 tgttgccccatacggcgcccttgggattgtattggtagaagaaatggtaccaccccttgt 1784
|||||||||| | |||||| | ||| ||||| |||||||||| ||||||||||||||||
Sbjct: 563 tgttgccccaaatggcgccgtcggggttgtactggtagaagaggtggtaccaccccttgt 504
Query: 1785 agtacatgggcgcgttgggatcattgatccagttcttggggggctggaagtggtaccccg 1844
|||| | || ||||||| || || ||||||||||| ||||||||||||| ||||||
Sbjct: 503 agtaaaccggaccgttggggtcgttcatccagttcttctcgggctggaagtggaaccccg 444
Query: 1845 t 1845
|
Sbjct: 443 t 443
>gb|BI951140.1|BI951140 HVSMEl0024K02f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0024K02f, mRNA sequence
Length = 877
Score = 79.8 bits (40), Expect = 3e-013
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 1746 tgggattgtattggtagaagaaatggtaccaccccttgtagtacatgggcgcgttgggat 1805
|||| ||||| ||||| || || ||| |||| ||||||||||| | ||| | || ||||
Sbjct: 295 tggggttgtactggtaaaacaagtggcaccatcccttgtagtatagtggcccatttggat 236
Query: 1806 cattgatccagttcttggggggctggaagtggtaccccgtcctgagcagggggttg 1861
| || |||||||| |||||||||||||||||||| || |||||||||| |||||||
Sbjct: 235 cgttaatccagtttttggggggctggaagtggtatcctgtcctgagcaaggggttg 180
>gb|CB879899.1|CB879899 HP08F21T HP Hordeum vulgare subsp. vulgare cDNA clone HP08F21
5-PRIME, mRNA sequence
Length = 511
Score = 73.8 bits (37), Expect = 2e-011
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 1751 ttgtattggtagaagaaatggtaccaccccttgtagtacatgggcgcgttgggatcattg 1810
||||| ||||||||||| |||||| | || |||| ||||||||| | || ||||| ||
Sbjct: 416 ttgtactggtagaagaagtggtacaatccgttgtggtacatgggaccattcggatcgttc 357
Query: 1811 atccagttcttggggggctggaagtggta 1839
||||||||||||| |||||||||||||||
Sbjct: 356 atccagttcttggcgggctggaagtggta 328
>gb|BG343465.2|BG343465 HVSMEg0005N10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005N10f, mRNA sequence
Length = 912
Score = 69.9 bits (35), Expect = 3e-010
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 1781 ttgtagtacatgggcgcgttgggatcattgatccagttcttggggggctggaagtggta 1839
||||||||||| ||| | || ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 192 ttgtagtacattggcccatttggatcgttgatccagttcttggggggctgtaagtggta 134
>gb|BQ765899.1|BQ765899 EBro03_SQ008_A13_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_A13 5', mRNA sequence
Length = 460
Score = 69.9 bits (35), Expect = 3e-010
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 1808 ttgatccagttcttggggggctggaagtggtaccccgtcctgagcaggggg 1858
|||||||||||| ||||||| ||||||||||| ||||||| ||||||||||
Sbjct: 245 ttgatccagttcatggggggttggaagtggtagcccgtccggagcaggggg 195
>gb|BQ468368.1|BQ468368 HM01B03T HM Hordeum vulgare subsp. vulgare cDNA clone HM01B03
5-PRIME, mRNA sequence
Length = 569
Score = 65.9 bits (33), Expect = 5e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 1751 ttgtattggtagaagaaatggtaccaccccttgtagtacatgggcgcgttgggatcattg 1810
||||| ||||||||||| |||||| | || |||| ||||||||| | |||||||| ||
Sbjct: 315 ttgtactggtagaagaagtggtacaatccgttgtggtacatgggaccattgggatcgttc 256
Query: 1811 atccagttcttggggggctggaagtggta 1839
||||||||||| |||||||||||||||
Sbjct: 255 tgccagttcttggcgggctggaagtggta 227
>gb|BQ471962.1|BQ471962 HV04A04r HV Hordeum vulgare subsp. vulgare cDNA clone HV04A04
5-PRIME, mRNA sequence
Length = 460
Score = 65.9 bits (33), Expect = 5e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 1751 ttgtattggtagaagaaatggtaccaccccttgtagtacatgggcgcgttgggatcattg 1810
||||| ||||||||||| |||||| | || |||| ||||||||| | |||||||| ||
Sbjct: 110 ttgtactggtagaagaagtggtacaatccgttgtggtacatgggaccattgggatcgttc 51
Query: 1811 atccagttcttggggggctggaagtggta 1839
||||||||||| |||||||||||||||
Sbjct: 50 tgccagttcttggcgggctggaagtggta 22
Score = 60.0 bits (30), Expect = 3e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1462 gatgacggggttgtgcgagggcttcacccactcccggagcagcgggtccgacacgttctt 1521
|||||||||||||| | |||||||||||| ||| ||| |||||||| || |||||||
Sbjct: 396 gatgacggggttgtactcgggcttcacccattccacgaggagcgggtcagaggcgttctt 337
Query: 1522 cgggtacgccacgttccggacctggt 1547
||||| || |||||| |||||||||
Sbjct: 336 ggggtaggcgacgttctggacctggt 311
>gb|BQ768116.1|BQ768116 EBro08_SQ010_A24_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_A24 5', mRNA sequence
Length = 642
Score = 65.9 bits (33), Expect = 5e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 1751 ttgtattggtagaagaaatggtaccaccccttgtagtacatgggcgcgttgggatcattg 1810
||||| ||||||||||| |||||| | || |||| ||||||||| | |||||||| ||
Sbjct: 299 ttgtactggtagaagaagtggtacaatccgttgtggtacatgggaccattgggatcgttc 240
Query: 1811 atccagttcttggggggctggaagtggta 1839
||||||||||| |||||||||||||||
Sbjct: 239 tgccagttcttggcgggctggaagtggta 211
Score = 60.0 bits (30), Expect = 3e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1462 gatgacggggttgtgcgagggcttcacccactcccggagcagcgggtccgacacgttctt 1521
|||||||||||||| | |||||||||||| ||| ||| |||||||| || |||||||
Sbjct: 585 gatgacggggttgtactcgggcttcacccattccacgaggagcgggtcagaggcgttctt 526
Query: 1522 cgggtacgccacgttccggacctggt 1547
||||| || |||||| |||||||||
Sbjct: 525 ggggtaggcgacgttctggacctggt 500
>gb|BF254441.2|BF254441 HVSMEf0004A12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0004A12f, mRNA sequence
Length = 855
Score = 61.9 bits (31), Expect = 8e-008
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 997 cttggccgggtcgtagaacgtcttggacgcgtagaagttgccgtagtcgta 1047
|||||| ||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct: 78 cttggcagggtcgtagaaggtcttggacgcgtagaacttgccccagtcgta 28
>gb|CB882214.1|CB882214 HL01D13w HL Hordeum vulgare subsp. vulgare cDNA clone HL01D13
3-PRIME, mRNA sequence
Length = 624
Score = 61.9 bits (31), Expect = 8e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 1463 atgacggggttgtgcgagggcttcacccactcccggagcagcgggtc 1509
||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct: 427 atgacggggttgtaggcgggcttcacccactcgcggagcagcgggtc 381
Score = 44.1 bits (22), Expect = 0.018
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1408 ccaggccgtggtcgggtcgcggaact 1433
|||||||||||| |||||||||||||
Sbjct: 482 ccaggccgtggtagggtcgcggaact 457
>gb|AL505004.1|AL505004 AL505004 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07B12V 5', mRNA sequence
Length = 700
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 997 cttggccgggtcgtagaacgtcttggacgcgtagaagttgcc 1038
|||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 347 cttggcggggtcgtagaaggtcttggacgcgtagaacttgcc 306
>gb|BF630067.2|BF630067 HVSMEb0007N12f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0007N12f, mRNA sequence
Length = 497
Score = 60.0 bits (30), Expect = 3e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1462 gatgacggggttgtgcgagggcttcacccactcccggagcagcgggtccgacacgttctt 1521
|||||||||||||| | |||||||||||| ||| ||| |||||||| || |||||||
Sbjct: 286 gatgacggggttgtactcgggcttcacccattccacgaggagcgggtcagaggcgttctt 227
Query: 1522 cgggtacgccacgttccggacctggt 1547
||||| || |||||| |||||||||
Sbjct: 226 ggggtaggcgacgttctggacctggt 201
>gb|BF258913.2|BF258913 HVSMEf0017A16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0017A16f, mRNA sequence
Length = 803
Score = 60.0 bits (30), Expect = 3e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1462 gatgacggggttgtgcgagggcttcacccactcccggagcagcgggtccgacacgttctt 1521
|||||||||||||| | |||||||||||| ||| ||| |||||||| || |||||||
Sbjct: 540 gatgacggggttgtactcgggcttcacccattccacgaggagcgggtcagaggcgttctt 481
Query: 1522 cgggtacgccacgttccggacctggt 1547
||||| || |||||| |||||||||
Sbjct: 480 ggggtaggcgacgttctggacctggt 455
Score = 50.1 bits (25), Expect = 3e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 1751 ttgtattggtagaagaaatggtaccaccccttgtagtacatgggcgcgttgggatcattg 1810
||||| ||||||||||| |||||| | || |||| ||||||||| | |||||||| ||
Sbjct: 254 ttgtactggtagaagaagtggtacaatccgttgtggtacatgggaccattgggatcgttc 195
Query: 1811 atccagttcttggggggctggaagtggta 1839
||||||||||| ||||| ||||||||
Sbjct: 194 tgccagttcttggccggctgaaagtggta 166
>gb|BF065803.2|BF065803 HV_CEb0014A16f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0014A16f, mRNA sequence
Length = 920
Score = 60.0 bits (30), Expect = 3e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1462 gatgacggggttgtgcgagggcttcacccactcccggagcagcgggtccgacacgttctt 1521
|||||||||||||| | |||||||||||| ||| ||| |||||||| || |||||||
Sbjct: 116 gatgacggggttgtactcgggcttcacccattccacgaggagcgggtcagaggcgttctt 57
Query: 1522 cgggtacgccacgttccggacctggt 1547
||||| || |||||| |||||||||
Sbjct: 56 ggggtaggcgacgttctggacctggt 31
Score = 42.1 bits (21), Expect = 0.072
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 957 tgtcggactcgttagcccagcccca 981
||||||||||||| |||||||||||
Sbjct: 603 tgtcggactcgttggcccagcccca 579
>gb|BE558756.2|BE558756 HV_CEb0020F02f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020F02f, mRNA sequence
Length = 799
Score = 60.0 bits (30), Expect = 3e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1462 gatgacggggttgtgcgagggcttcacccactcccggagcagcgggtccgacacgttctt 1521
|||||||||||||| | |||||||||||| ||| ||| |||||||| || |||||||
Sbjct: 331 gatgacggggttgtactcgggcttcacccattccacgaggagcgggtcagaggcgttctt 272
Query: 1522 cgggtacgccacgttccggacctggt 1547
||||| || |||||| |||||||||
Sbjct: 271 ggggtaggcgacgttctggacctggt 246
Score = 40.1 bits (20), Expect = 0.28
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 1751 ttgtattggtagaagaaatggtaccaccccttgtagtacatggg 1794
||||| ||||||||||| |||||| | || |||| |||||||||
Sbjct: 45 ttgtactggtagaagaagtggtacaatccgttgtggtacatggg 2
>gb|AV926089.1|AV926089 AV926089 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd18b04 5', mRNA sequence
Length = 550
Score = 60.0 bits (30), Expect = 3e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1462 gatgacggggttgtgcgagggcttcacccactcccggagcagcgggtccgacacgttctt 1521
|||||||||||||| | |||||||||||| ||| ||| |||||||| || |||||||
Sbjct: 241 gatgacggggttgtactcgggcttcacccattccacgaggagcgggtcagaggcgttctt 182
Query: 1522 cgggtacgccacgttccggacctggt 1547
||||| || |||||| |||||||||
Sbjct: 181 ggggtaggcgacgttctggacctggt 156
>gb|BU995607.1|BU995607 HM10M18r HM Hordeum vulgare subsp. vulgare cDNA clone HM10M18
5-PRIME, mRNA sequence
Length = 625
Score = 60.0 bits (30), Expect = 3e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1462 gatgacggggttgtgcgagggcttcacccactcccggagcagcgggtccgacacgttctt 1521
|||||||||||||| | |||||||||||| ||| ||| |||||||| || |||||||
Sbjct: 364 gatgacggggttgtactcgggcttcacccattccacgaggagcgggtcagaggcgttctt 305
Query: 1522 cgggtacgccacgttccggacctggt 1547
||||| || |||||| |||||||||
Sbjct: 304 ggggtaggcgacgttctggacctggt 279
Score = 44.1 bits (22), Expect = 0.018
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 1751 ttgtattggtagaagaaatggtaccaccccttgtagtacatgggcgcgttgggatcattg 1810
||||| ||||||||||| |||||| | || |||| ||||||||| | |||||||| ||
Sbjct: 78 ttgtactggtagaagaagtggtacaatccgttgtggtacatgggaccattgggatcgttc 19
Query: 1811 atccagttcttggggggc 1828
||||||||||| ||||
Sbjct: 18 tgccagttcttggcgggc 1
>gb|BF254279.2|BF254279 HVSMEf0003I12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0003I12f, mRNA sequence
Length = 775
Score = 58.0 bits (29), Expect = 1e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 1480 gggcttcacccactcccggagcagcgggtccga 1512
|||||| ||||||||||||||||||||||||||
Sbjct: 141 gggcttgacccactcccggagcagcgggtccga 109
>gb|BF616993.2|BF616993 HVSMEc0014D10f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0014D10f, mRNA sequence
Length = 738
Score = 54.0 bits (27), Expect = 2e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 1726 gttgccccatacggcgcccttgggattgtattggtagaagaaatggtaccaccccttgta 1785
||||||||| | ||| || | ||| ||||| |||||||||| |||||||||||||||||
Sbjct: 554 gttgccccaaagggccccgtcggggttgtactggtagaagaggtggtaccaccccttgta 495
Query: 1786 gta 1788
|||
Sbjct: 494 gta 492
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 317,928
Number of Sequences: 312970
Number of extensions: 317928
Number of successful extensions: 100011
Number of sequences better than 0.5: 122
Number of HSP's better than 0.5 without gapping: 109
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 99644
Number of HSP's gapped (non-prelim): 314
length of query: 2055
length of database: 175,134,539
effective HSP length: 20
effective length of query: 2035
effective length of database: 168,875,139
effective search space: 343660907865
effective search space used: 343660907865
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)