BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2486118.2.1
(635 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM817226.1|BM817226 HC109A10_T3.ab1 HC Hordeum vulgare s... 389 e-107
gb|AV836878.1|AV836878 AV836878 K. Sato unpublished cDNA li... 381 e-104
gb|BQ661800.1|BQ661800 HP01F17w HP Hordeum vulgare subsp. v... 373 e-102
gb|BG365821.2|BG365821 HVSMEi0004F18f Hordeum vulgare 20 DA... 212 1e-053
gb|BQ754945.1|BQ754945 EBed02_SQ003_E09_R endosperm, 8 DPA,... 103 7e-021
gb|AL503953.1|AL503953 AL503953 Hordeum vulgare Barke roots... 58 4e-007
gb|BG417206.1|BG417206 HVSMEk0016L20f Hordeum vulgare testa... 58 4e-007
gb|AV911878.1|AV911878 AV911878 K. Sato unpublished cDNA li... 58 4e-007
gb|AV915531.1|AV915531 AV915531 K. Sato unpublished cDNA li... 58 4e-007
gb|AV920631.1|AV920631 AV920631 K. Sato unpublished cDNA li... 58 4e-007
gb|BJ468052.1|BJ468052 BJ468052 K. Sato unpublished cDNA li... 58 4e-007
gb|BQ762609.1|BQ762609 EBro02_SQ004_O10_R root, 3 week, hyd... 58 4e-007
gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA li... 44 0.006
gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA li... 44 0.006
gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA li... 44 0.006
gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. v... 44 0.006
gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no... 44 0.006
gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. v... 44 0.006
gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. v... 44 0.006
gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. v... 44 0.006
gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. v... 44 0.006
gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. v... 44 0.006
gb|BE411894.1|BE411894 ISC010.D05F990917 ITEC ISC Barley Le... 40 0.086
gb|AL500926.1|AL500926 AL500926 Hordeum vulgare Barke roots... 40 0.086
gb|AL503049.1|AL503049 AL503049 Hordeum vulgare Barke roots... 40 0.086
gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots... 40 0.086
gb|BF623737.3|BF623737 HVSMEa0005E19f Hordeum vulgare seedl... 40 0.086
gb|BG343988.2|BG343988 HVSMEg0007F03f Hordeum vulgare pre-a... 40 0.086
gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DA... 40 0.086
gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA li... 40 0.086
gb|BJ447699.1|BJ447699 BJ447699 K. Sato unpublished cDNA li... 40 0.086
gb|BJ455449.1|BJ455449 BJ455449 K. Sato unpublished cDNA li... 40 0.086
gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA li... 40 0.086
gb|BJ468308.1|BJ468308 BJ468308 K. Sato unpublished cDNA li... 40 0.086
gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. v... 40 0.086
gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. v... 40 0.086
gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. v... 40 0.086
gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. v... 40 0.086
gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. v... 40 0.086
gb|BF264967.3|BF264967 HV_CEa0010O05f Hordeum vulgare seedl... 38 0.34
>gb|BM817226.1|BM817226 HC109A10_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109A10_T3.ab1 similar to (AC009525) Very similar to
cellulose synthase catalytic subunit [Arabidopsis
thaliana], mRNA sequence
Length = 927
Score = 389 bits (196), Expect = e-107
Identities = 282/311 (90%)
Strand = Plus / Plus
Query: 18 acgacgagttcncggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatcg 77
||||||||||| | ||||| |||||||||||||||||||| || |||||||| ||||| |
Sbjct: 296 acgacgagttcgccgacctctacatcgtcaagtggacgtccctcatgatcccacccattg 355
Query: 78 tgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagcg 137
| ||||||||||| ||||| |||| ||| || ||||| ||||||||||||||||||||||
Sbjct: 356 tcatcatgatggtcaacctcatcgccatagctgtcggcttcagccgcaccatctacagcg 415
Query: 138 agatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcgc 197
|||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |
Sbjct: 416 agatcccgcagtggagcaagctcctgggcggtgtcttcttcagcttctgggtactggctc 475
Query: 198 acctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtct 257
||||||||||||| ||||||||||| |||||||| | || |||||||||||||||||||
Sbjct: 476 acctgtacccgtttgccaagggcctcatggggcgccgcgggcgcacgccgaccatcgtct 535
Query: 258 tcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatcaacccgc 317
|||||||| | ||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct: 536 tcgtctggtccggcctcctcgccatcaccatctccctgctgtgggttgccatcaacccgc 595
Query: 318 cgtcccagaac 328
|||||||||||
Sbjct: 596 cgtcccagaac 606
>gb|AV836878.1|AV836878 AV836878 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd15h01, mRNA
sequence
Length = 665
Score = 381 bits (192), Expect = e-104
Identities = 281/311 (90%)
Strand = Plus / Minus
Query: 18 acgacgagttcncggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatcg 77
||||||||||| | ||||| |||||||||||||||||||| || |||||||| ||||| |
Sbjct: 582 acgacgagttcgccgacctctacatcgtcaagtggacgtccctcatgatcccacccattg 523
Query: 78 tgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagcg 137
| ||||||||||| ||||| |||| ||| || ||||| ||||||||||||||||||||||
Sbjct: 522 tcatcatgatggtcaacctcatcgccatagctgtcggcttcagccgcaccatctacagcg 463
Query: 138 agatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcgc 197
|||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |
Sbjct: 462 agatcccgcagtggagcaagctcctgggcggtgtcttcttcagcttctgggtactggctc 403
Query: 198 acctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtct 257
|||||||||| || ||||||||||| |||||||| | || |||||||||||||||||||
Sbjct: 402 acctgtacccatttgccaagggcctcatggggcgccgcgggcgcacgccgaccatcgtct 343
Query: 258 tcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatcaacccgc 317
|||||||| | ||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct: 342 tcgtctggtccggcctcctcgccatcaccatctccctgctgtgggttgccatcaacccgc 283
Query: 318 cgtcccagaac 328
|||||||||||
Sbjct: 282 cgtcccagaac 272
>gb|BQ661800.1|BQ661800 HP01F17w HP Hordeum vulgare subsp. vulgare cDNA clone HP01F17
3-PRIME, mRNA sequence
Length = 622
Score = 373 bits (188), Expect = e-102
Identities = 280/311 (90%)
Strand = Plus / Minus
Query: 18 acgacgagttcncggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatcg 77
|||| |||||| | ||||| |||||||||||||||||||| || |||||||| ||||| |
Sbjct: 587 acgatgagttcgccgacctctacatcgtcaagtggacgtccctcatgatcccacccattg 528
Query: 78 tgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagcg 137
| ||||||||||| ||||| |||| ||| || ||||| ||||||||||||||||||||||
Sbjct: 527 tcatcatgatggtcaacctcatcgccatagctgtcggcttcagccgcaccatctacagcg 468
Query: 138 agatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcgc 197
|||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |
Sbjct: 467 agatcccgcagtggagcaagctcctgggcggtgtcttcttcagcttctgggtactggctc 408
Query: 198 acctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtct 257
||||||||||||||||||||||||| |||||||| | || |||||||||||||||||||
Sbjct: 407 acctgtacccgttcgccaagggcctcatggggcgccgcgggcgcacgccgaccatcgtct 348
Query: 258 tcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatcaacccgc 317
|||||||| | ||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct: 347 tcgtctggtccggcctcctcgccatcaccatctccctgctgtgggtcgccatcaacccgc 288
Query: 318 cgtcccagaac 328
| || ||||||
Sbjct: 287 catcacagaac 277
>gb|BG365821.2|BG365821 HVSMEi0004F18f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0004F18f, mRNA sequence
Length = 888
Score = 212 bits (107), Expect = 1e-053
Identities = 220/254 (86%), Gaps = 3/254 (1%)
Strand = Plus / Plus
Query: 18 acgacgagttcncggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatcg 77
||||||||||| | ||||| |||||||||||||||||||| || |||||||| ||||| |
Sbjct: 443 acgacgagttcgccgacctctacatcgtcaagtggacgtccctcatgatcccacccattg 502
Query: 78 tgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagcg 137
| ||||||||||| ||||| |||| ||| || |||||||||| |||||||||||||||||
Sbjct: 503 tcatcatgatggtcaacctcatcgccatagctgtcgggttcaaccgcaccatctacagcg 562
Query: 138 agatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcgc 197
||||||| || ||||||||||| |||||||| |||||||| |||||||||| |||||
Sbjct: 563 agatcccccaatggagcaagctcctgggcggtgtcttcttaagcttctggg-actggctt 621
Query: 198 acctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtct 257
||| ||||||||||||| ||||||| |||||||| | || |||||||| ||||||| ||
Sbjct: 622 acccgtacccgttcgcc-agggcctcatggggcgccgcgggcgcacgcccaccatcg-ct 679
Query: 258 tcgtctgggcgggc 271
|||| ||| |||||
Sbjct: 680 tcgtttggtcgggc 693
>gb|BQ754945.1|BQ754945 EBed02_SQ003_E09_R endosperm, 8 DPA, no treatment, cv Optic, EBed02
Hordeum vulgare subsp. vulgare cDNA clone
EBed02_SQ003_E09 5', mRNA sequence
Length = 383
Score = 103 bits (52), Expect = 7e-021
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 131 tacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtg 190
||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 281 tacagcgagttcccgcaatggagcaagctgctgggcggcgccttcttcagcttctgagtg 340
Query: 191 ctggcgcacctgtacccgttcgccaagggcct 222
||| ||||| ||||| |||||||| |||||
Sbjct: 341 ctgtgccacctctaccccttcgccaaaggcct 372
>gb|AL503953.1|AL503953 AL503953 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03P07T 5', mRNA sequence
Length = 638
Score = 58.0 bits (29), Expect = 4e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 164 ggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggc 220
|||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||
Sbjct: 294 ggcggcgtcttcttcaacttctgggtgctcttccacctctaccccttcgccaagggc 350
>gb|BG417206.1|BG417206 HVSMEk0016L20f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0016L20f, mRNA sequence
Length = 472
Score = 58.0 bits (29), Expect = 4e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 164 ggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggc 220
|||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||
Sbjct: 124 ggcggcgtcttcttcaacttctgggtgctcttccacctctaccccttcgccaagggc 180
>gb|AV911878.1|AV911878 AV911878 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak1o11 3', mRNA sequence
Length = 558
Score = 58.0 bits (29), Expect = 4e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 164 ggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggc 220
|||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||
Sbjct: 370 ggcggcgtcttcttcaacttctgggtgctcttccacctctaccccttcgccaagggc 314
>gb|AV915531.1|AV915531 AV915531 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14p10 5', mRNA sequence
Length = 629
Score = 58.0 bits (29), Expect = 4e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 164 ggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggc 220
|||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||
Sbjct: 378 ggcggcgtcttcttcaacttctgggtgctcttccacctctaccccttcgccaagggc 434
>gb|AV920631.1|AV920631 AV920631 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14p10 3', mRNA sequence
Length = 599
Score = 58.0 bits (29), Expect = 4e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 164 ggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggc 220
|||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||
Sbjct: 409 ggcggcgtcttcttcaacttctgggtgctcttccacctctaccccttcgccaagggc 353
>gb|BJ468052.1|BJ468052 BJ468052 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30n24 3', mRNA sequence
Length = 525
Score = 58.0 bits (29), Expect = 4e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 164 ggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggc 220
|||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||
Sbjct: 416 ggcggcgtcttcttcaacttctgggtgctcttccacctctaccccttcgccaagggc 360
>gb|BQ762609.1|BQ762609 EBro02_SQ004_O10_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ004_O10 5', mRNA sequence
Length = 649
Score = 58.0 bits (29), Expect = 4e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 164 ggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggc 220
|||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||
Sbjct: 13 ggcggcgtcttcttcaacttctgggtgctcttccacctctaccccttcgccaagggc 69
>gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25l19 3', mRNA sequence
Length = 505
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 238 ccgcacgccgaccatcgtcttcgtctgggc 267
|||||||||||||||||| ||||||||||
Sbjct: 227 ccgcacgccgaccatcgttgtcgtctgggc 198
>gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i05 3', mRNA sequence
Length = 658
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 238 ccgcacgccgaccatcgtcttcgtctgggc 267
|||||||||||||||||| ||||||||||
Sbjct: 283 ccgcacgccgaccatcgttgtcgtctgggc 254
>gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i06 3', mRNA sequence
Length = 658
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 238 ccgcacgccgaccatcgtcttcgtctgggc 267
|||||||||||||||||| ||||||||||
Sbjct: 290 ccgcacgccgaccatcgttgtcgtctgggc 261
>gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. vulgare cDNA clone HM01M13
5-PRIME, mRNA sequence
Length = 653
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 238 ccgcacgccgaccatcgtcttcgtctgggc 267
|||||||||||||||||| ||||||||||
Sbjct: 479 ccgcacgccgaccatcgttgtcgtctgggc 508
>gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ001_J01 5', mRNA sequence
Length = 518
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 238 ccgcacgccgaccatcgtcttcgtctgggc 267
|||||||||||||||||| ||||||||||
Sbjct: 390 ccgcacgccgaccatcgttgtcgtctgggc 419
>gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. vulgare cDNA clone HB03H16
5-PRIME, mRNA sequence
Length = 471
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 238 ccgcacgccgaccatcgtcttcgtctgggc 267
|||||||||||||||||| ||||||||||
Sbjct: 160 ccgcacgccgaccatcgttgtcgtctgggc 189
>gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. vulgare cDNA clone HB03K11
5-PRIME, mRNA sequence
Length = 577
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 238 ccgcacgccgaccatcgtcttcgtctgggc 267
|||||||||||||||||| ||||||||||
Sbjct: 384 ccgcacgccgaccatcgttgtcgtctgggc 413
>gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. vulgare cDNA clone HF13B10
5-PRIME, mRNA sequence
Length = 622
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 238 ccgcacgccgaccatcgtcttcgtctgggc 267
|||||||||||||||||| ||||||||||
Sbjct: 551 ccgcacgccgaccatcgttgtcgtctgggc 580
>gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. vulgare cDNA clone HI12P13
3-PRIME, mRNA sequence
Length = 651
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 238 ccgcacgccgaccatcgtcttcgtctgggc 267
|||||||||||||||||| ||||||||||
Sbjct: 283 ccgcacgccgaccatcgttgtcgtctgggc 254
>gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. vulgare cDNA clone HX10P19
3-PRIME, mRNA sequence
Length = 616
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 238 ccgcacgccgaccatcgtcttcgtctgggc 267
|||||||||||||||||| ||||||||||
Sbjct: 226 ccgcacgccgaccatcgttgtcgtctgggc 197
>gb|BE411894.1|BE411894 ISC010.D05F990917 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC010.D05, mRNA sequence
Length = 448
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 238 ccgcacgccgaccatcgtcttcgt 261
||||||||||||||||||| ||||
Sbjct: 250 ccgcacgccgaccatcgtcatcgt 273
>gb|AL500926.1|AL500926 AL500926 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02G16u 3', mRNA sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 238 ccgcacgccgaccatcgtcttcgt 261
||||||||||||||||||| ||||
Sbjct: 472 ccgcacgccgaccatcgtcatcgt 449
>gb|AL503049.1|AL503049 AL503049 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09I21u 3', mRNA sequence
Length = 644
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 238 ccgcacgccgaccatcgtcttcgt 261
||||||||||||||||||| ||||
Sbjct: 467 ccgcacgccgaccatcgtcatcgt 444
>gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02G16T 5', mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 238 ccgcacgccgaccatcgtcttcgt 261
||||||||||||||||||| ||||
Sbjct: 515 ccgcacgccgaccatcgtcatcgt 538
>gb|BF623737.3|BF623737 HVSMEa0005E19f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0005E19f, mRNA sequence
Length = 489
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 558 tagttcttttgttcttttgttttt 581
||||||||||||| ||||||||||
Sbjct: 11 tagttcttttgtttttttgttttt 34
>gb|BG343988.2|BG343988 HVSMEg0007F03f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0007F03f, mRNA sequence
Length = 840
Score = 40.1 bits (20), Expect = 0.086
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 gcaagctgctgggcggcgtc 172
||||||||||||||||||||
Sbjct: 384 gcaagctgctgggcggcgtc 403
>gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0017H01f, mRNA sequence
Length = 755
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 238 ccgcacgccgaccatcgtcttcgt 261
||||||||||||||||||| ||||
Sbjct: 159 ccgcacgccgaccatcgtcatcgt 182
>gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20p06 3', mRNA sequence
Length = 509
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 238 ccgcacgccgaccatcgtcttcgt 261
||||||||||||||||||| ||||
Sbjct: 356 ccgcacgccgaccatcgtcatcgt 333
>gb|BJ447699.1|BJ447699 BJ447699 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16p07 5', mRNA sequence
Length = 577
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 238 ccgcacgccgaccatcgtcttcgt 261
||||||||||||||||||| ||||
Sbjct: 132 ccgcacgccgaccatcgtcatcgt 155
>gb|BJ455449.1|BJ455449 BJ455449 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16p07 3', mRNA sequence
Length = 528
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 238 ccgcacgccgaccatcgtcttcgt 261
||||||||||||||||||| ||||
Sbjct: 397 ccgcacgccgaccatcgtcatcgt 374
>gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42j03 3', mRNA sequence
Length = 590
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 238 ccgcacgccgaccatcgtcttcgt 261
||||||||||||||||||| ||||
Sbjct: 411 ccgcacgccgaccatcgtcatcgt 388
>gb|BJ468308.1|BJ468308 BJ468308 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38c07 3', mRNA sequence
Length = 611
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 238 ccgcacgccgaccatcgtcttcgt 261
||||||||||||||||||| ||||
Sbjct: 430 ccgcacgccgaccatcgtcatcgt 407
>gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. vulgare cDNA clone HI05F03
3-PRIME, mRNA sequence
Length = 539
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 238 ccgcacgccgaccatcgtcttcgt 261
||||||||||||||||||| ||||
Sbjct: 258 ccgcacgccgaccatcgtcatcgt 235
>gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
5-PRIME, mRNA sequence
Length = 617
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 238 ccgcacgccgaccatcgtcttcgt 261
||||||||||||||||||| ||||
Sbjct: 523 ccgcacgccgaccatcgtcatcgt 546
>gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
5-PRIME, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 238 ccgcacgccgaccatcgtcttcgt 261
||||||||||||||||||| ||||
Sbjct: 523 ccgcacgccgaccatcgtcatcgt 546
>gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
3-PRIME, mRNA sequence
Length = 652
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 238 ccgcacgccgaccatcgtcttcgt 261
||||||||||||||||||| ||||
Sbjct: 437 ccgcacgccgaccatcgtcatcgt 414
>gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
3-PRIME, mRNA sequence
Length = 654
Score = 40.1 bits (20), Expect = 0.086
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 238 ccgcacgccgaccatcgtcttcgt 261
||||||||||||||||||| ||||
Sbjct: 438 ccgcacgccgaccatcgtcatcgt 415
>gb|BF264967.3|BF264967 HV_CEa0010O05f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0010O05f, mRNA sequence
Length = 882
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 564 ttttgttcttttgtttttg 582
|||||||||||||||||||
Sbjct: 528 ttttgttcttttgtttttg 510
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,194
Number of Sequences: 312970
Number of extensions: 79194
Number of successful extensions: 21356
Number of sequences better than 0.5: 40
Number of HSP's better than 0.5 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21306
Number of HSP's gapped (non-prelim): 41
length of query: 635
length of database: 175,134,539
effective HSP length: 19
effective length of query: 616
effective length of database: 169,188,109
effective search space: 104219875144
effective search space used: 104219875144
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)