BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478084.2.1
(1395 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB882717.1|CB882717 HL02K11w HL Hordeum vulgare subsp. v... 618 e-175
gb|BM444360.1|BM444360 EBem09_SQ004_O20_R embryo, 1 Day ger... 432 e-119
gb|BU994209.1|BU994209 HM06C21r HM Hordeum vulgare subsp. v... 432 e-119
gb|CB859645.1|CB859645 HI11B21w HI Hordeum vulgare subsp. v... 432 e-119
gb|CB880317.1|CB880317 HM06C21w HM Hordeum vulgare subsp. v... 432 e-119
gb|CB881920.1|CB881920 HM11E21w HM Hordeum vulgare subsp. v... 432 e-119
gb|CB880111.1|CB880111 HM05I10w HM Hordeum vulgare subsp. v... 430 e-119
gb|CB881379.1|CB881379 HM09K05w HM Hordeum vulgare subsp. v... 430 e-119
gb|BM097912.2|BM097912 EBpi03_SQ002_A12_R pistil, 4 DPA, no... 335 2e-090
gb|CA016620.1|CA016620 HV08A21u HV Hordeum vulgare subsp. v... 281 3e-074
gb|CB859459.1|CB859459 HI10I05w HI Hordeum vulgare subsp. v... 281 3e-074
gb|AL500666.1|AL500666 AL500666 Hordeum vulgare Barke roots... 268 5e-070
gb|BU995236.1|BU995236 HM09K05r HM Hordeum vulgare subsp. v... 264 7e-069
gb|BG417675.1|BG417675 HVSMEk0019B08f Hordeum vulgare testa... 250 1e-064
gb|BU978006.1|BU978006 HA12G16r HA Hordeum vulgare subsp. v... 238 4e-061
gb|BM815960.1|BM815960 HC05G03_T3.ab1 HC Hordeum vulgare su... 230 1e-058
gb|BF256845.2|BF256845 HVSMEf0011C19f Hordeum vulgare seedl... 228 4e-058
gb|BU977226.1|BU977226 HA11A22u HA Hordeum vulgare subsp. v... 208 4e-052
gb|BU995764.1|BU995764 HM11E21r HM Hordeum vulgare subsp. v... 198 3e-049
gb|BU999255.1|BU999255 HI13O20r HI Hordeum vulgare subsp. v... 198 3e-049
gb|CD663895.1|CD663895 UCRHV18_07aa08_b1 Drought-stressed D... 186 1e-045
gb|BU994581.1|BU994581 HM07I10r HM Hordeum vulgare subsp. v... 117 1e-024
gb|AL503281.1|AL503281 AL503281 Hordeum vulgare Barke roots... 101 6e-020
gb|BF263303.2|BF263303 HV_CEa0006G07f Hordeum vulgare seedl... 101 6e-020
gb|CA018243.1|CA018243 HV08A21r HV Hordeum vulgare subsp. v... 101 6e-020
gb|BI957745.1|BI957745 HVSMEn0010P23f Hordeum vulgare rachi... 94 1e-017
gb|BI960133.1|BI960133 HVSMEn0023G02f Hordeum vulgare rachi... 94 1e-017
gb|BI960627.1|BI960627 HVSMEn0025G22f Hordeum vulgare rachi... 94 1e-017
gb|BM815962.1|BM815962 HB108B11_SK.ab1 HB Hordeum vulgare s... 86 4e-015
gb|BQ762356.1|BQ762356 EBro01_SQ005_H17_R root, 3 week, hyd... 70 2e-010
gb|BU977225.1|BU977225 HA11A22r HA Hordeum vulgare subsp. v... 66 3e-009
gb|BI959113.1|BI959113 HVSMEn0018D20f Hordeum vulgare rachi... 60 2e-007
gb|BE519520.1|BE519520 HV_CEb0016L18f Hordeum vulgare seedl... 58 8e-007
gb|BJ452055.1|BJ452055 BJ452055 K. Sato unpublished cDNA li... 48 8e-004
gb|BJ459613.1|BJ459613 BJ459613 K. Sato unpublished cDNA li... 48 8e-004
gb|BI777397.2|BI777397 EBro04_SQ001_B15_R root, 3 week, sal... 48 8e-004
gb|BU982246.1|BU982246 HA25P06r HA Hordeum vulgare subsp. v... 48 8e-004
gb|BU996564.1|BU996564 HM14A08r HM Hordeum vulgare subsp. v... 48 8e-004
gb|CB858711.1|CB858711 HI08B07w HI Hordeum vulgare subsp. v... 48 8e-004
gb|CB858932.1|CB858932 HI08M05w HI Hordeum vulgare subsp. v... 48 8e-004
gb|CK125579.1|CK125579 BES1824109b18 BES1824 Hordeum vulgar... 48 8e-004
gb|BF257469.3|BF257469 HVSMEf0013A01f Hordeum vulgare seedl... 46 0.003
gb|BU999833.1|BU999833 HI15P16r HI Hordeum vulgare subsp. v... 46 0.003
gb|BF630427.2|BF630427 HVSMEb0009F10f Hordeum vulgare seedl... 44 0.012
gb|BG300498.2|BG300498 HVSMEb0017E07f Hordeum vulgare seedl... 44 0.012
gb|CA025940.1|CA025940 HZ53J12r HZ Hordeum vulgare subsp. v... 44 0.012
gb|CA026040.1|CA026040 HZ53O17r HZ Hordeum vulgare subsp. v... 44 0.012
gb|BQ765422.1|BQ765422 EBro03_SQ007_J04_R root, 3 week, wat... 42 0.049
gb|CA016105.1|CA016105 HV10H24u HV Hordeum vulgare subsp. v... 42 0.049
gb|BI959432.1|BI959432 HVSMEn0019K11f Hordeum vulgare rachi... 40 0.19
>gb|CB882717.1|CB882717 HL02K11w HL Hordeum vulgare subsp. vulgare cDNA clone HL02K11
3-PRIME, mRNA sequence
Length = 629
Score = 618 bits (312), Expect = e-175
Identities = 532/604 (88%), Gaps = 1/604 (0%)
Strand = Plus / Minus
Query: 295 cttccggaacttctccatgtgctccgcctgcagcgagatggccacggacaggctgccgtc 354
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 613 cttccggaacttctccatatgctcggcctgcagcgagatggccaccgacaggctgccgtc 554
Query: 355 gcggttggcgctggggagcacgaacgcgagcccctcgtaggcgatgccgccggggcccat 414
|||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 553 gcggctggcgctggggagcacgaaggcgagcccctcgtacgcgatgccgccggggcccat 494
Query: 415 gaacacgggccgcccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctggt 474
|||||||||||| ||||| || ||||| |||||||| |||||||||||||||||||||||
Sbjct: 493 gaacacgggccggccccagccaaagtcggcgtcgtgaatgggcaggcgcacccagctggt 434
Query: 475 gagccccaggttggggcaccggaacgtgtgcgccccgcggaccagcgccgacaggtccgg 534
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 433 gagcccgaggttggggcaccggaacgtgtgcgcgccgcggaccagcgccgacaggtcagg 374
Query: 535 ctgcagctccaggtagtccagcgctgaccggcagtacccgtcgtccatccggtccaacgc 594
||||| ||||||| |||||||||| || ||||||||| ||| ||||||| |||| |||
Sbjct: 373 ctgcatctccagggagtccagcgccgagcggcagtactcgttgtccatcacctccagcgc 314
Query: 595 ggcctggatcacggacgcgccctctgccaccccggccgtcaccgtgccggcgttggccag 654
||||||||| || |||||| || |||| | | | |||||| |||| || || ||
Sbjct: 313 cgcctggatcgtggtcgcgccgtccgccagcgagccagtcaccttgcccgccaccgcgag 254
Query: 655 cggcgtcgccgtgaaagatcacgttgccgaagtagccctccggaagcggcggctgcagcc 714
|||||| || ||| ||||| ||||||||||||||||||||||| |||| ||||||||||
Sbjct: 253 cggcgtggcggtg-aagatgacgttgccgaagtagccctccgggagcgcgggctgcagcc 195
Query: 715 gctgccgcccgtccgtggcgcagtacagcttggtgggctggtcggccggcaggccgcgcg 774
|||||||||||||||||||||||||||||||||||||||| || | | |||||| || |
Sbjct: 194 gctgccgcccgtccgtggcgcagtacagcttggtgggctgctctggggacaggccacggg 135
Query: 775 ccagggacgcgcaccgccacacgtgcgccgccagcacagcgtacgtgctgaaccgcggcg 834
||||||||||||||||||||||||||||| | ||||| ||||| |||||| |||||||||
Sbjct: 134 ccagggacgcgcaccgccacacgtgcgccccgagcaccgcgtaggtgctggaccgcggcg 75
Query: 835 cgccctcgcgcgcggggacctgcgaacggaggcggacgagctcggcgcgggagagcttga 894
||||||||| || ||||| ||| | |||| |||| |||| ||||||||| | |||||||
Sbjct: 74 cgccctcgcccgtggggagctgggcgcggaagcggccgaggtcggcgcggcacagcttga 15
Query: 895 agat 898
||||
Sbjct: 14 agat 11
>gb|BM444360.1|BM444360 EBem09_SQ004_O20_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_O20 5', mRNA sequence
Length = 555
Score = 432 bits (218), Expect = e-119
Identities = 302/330 (91%)
Strand = Plus / Minus
Query: 275 gatcagaagtcgtagatgagcttccggaacttctccatgtgctccgcctgcagcgagatg 334
||||||||||| |||| | |||||||||||||||||| ||||| |||||||||||||||
Sbjct: 356 gatcagaagtcaaagatcatcttccggaacttctccatatgctcggcctgcagcgagatg 297
Query: 335 gccacggacaggctgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtag 394
||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 296 gccaccgacaggctgccgtcgcggctggcgctggggagcacgaaggcgagcccctcgtac 237
Query: 395 gcgatgccgccggggcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatg 454
|||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||
Sbjct: 236 gcgatgccgccggggcccatgaacacgggccggccccagccaaagtcggcgtcgtgaatg 177
Query: 455 ggcaggcgcacccagctggtgagccccaggttggggcaccggaacgtgtgcgccccgcgg 514
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 176 ggcaggcgcacccagctggtgagcccgaggttggggcaccggaacgtgtgcgcgccgcgg 117
Query: 515 accagcgccgacaggtccggctgcagctccaggtagtccagcgctgaccggcagtacccg 574
||||||||||||||||| ||||||| |||||||||||||||||| || ||||||||| ||
Sbjct: 116 accagcgccgacaggtcaggctgcatctccaggtagtccagcgccgagcggcagtactcg 57
Query: 575 tcgtccatccggtccaacgcggcctggatc 604
| ||||||| |||| ||| |||||||||
Sbjct: 56 ttgtccatcacctccagcgccgcctggatc 27
Score = 52.0 bits (26), Expect = 5e-005
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 163 gtgcaggaactatgtgtgaaatcaaagaat-attgctgcaacctac 207
|||||||||||| ||||| ||||||||||| ||||||||| |||||
Sbjct: 464 gtgcaggaactacgtgtgtaatcaaagaatcattgctgcatcctac 419
>gb|BU994209.1|BU994209 HM06C21r HM Hordeum vulgare subsp. vulgare cDNA clone HM06C21
5-PRIME, mRNA sequence
Length = 603
Score = 432 bits (218), Expect = e-119
Identities = 302/330 (91%)
Strand = Plus / Minus
Query: 275 gatcagaagtcgtagatgagcttccggaacttctccatgtgctccgcctgcagcgagatg 334
||||||||||| |||| | |||||||||||||||||| ||||| |||||||||||||||
Sbjct: 395 gatcagaagtcaaagatcatcttccggaacttctccatatgctcggcctgcagcgagatg 336
Query: 335 gccacggacaggctgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtag 394
||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 335 gccaccgacaggctgccgtcgcggctggcgctggggagcacgaaggcgagcccctcgtac 276
Query: 395 gcgatgccgccggggcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatg 454
|||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||
Sbjct: 275 gcgatgccgccggggcccatgaacacgggccggccccagccaaagtcggcgtcgtgaatg 216
Query: 455 ggcaggcgcacccagctggtgagccccaggttggggcaccggaacgtgtgcgccccgcgg 514
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 215 ggcaggcgcacccagctggtgagcccgaggttggggcaccggaacgtgtgcgcgccgcgg 156
Query: 515 accagcgccgacaggtccggctgcagctccaggtagtccagcgctgaccggcagtacccg 574
||||||||||||||||| ||||||| |||||||||||||||||| || ||||||||| ||
Sbjct: 155 accagcgccgacaggtcaggctgcatctccaggtagtccagcgccgagcggcagtactcg 96
Query: 575 tcgtccatccggtccaacgcggcctggatc 604
| ||||||| |||| ||| |||||||||
Sbjct: 95 ttgtccatcacctccagcgccgcctggatc 66
Score = 52.0 bits (26), Expect = 5e-005
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 163 gtgcaggaactatgtgtgaaatcaaagaat-attgctgcaacctac 207
|||||||||||| ||||| ||||||||||| ||||||||| |||||
Sbjct: 503 gtgcaggaactacgtgtgtaatcaaagaatcattgctgcatcctac 458
>gb|CB859645.1|CB859645 HI11B21w HI Hordeum vulgare subsp. vulgare cDNA clone HI11B21
3-PRIME, mRNA sequence
Length = 562
Score = 432 bits (218), Expect = e-119
Identities = 302/330 (91%)
Strand = Plus / Plus
Query: 275 gatcagaagtcgtagatgagcttccggaacttctccatgtgctccgcctgcagcgagatg 334
||||||||||| |||| | |||||||||||||||||| ||||| |||||||||||||||
Sbjct: 231 gatcagaagtcaaagatcatcttccggaacttctccatatgctcggcctgcagcgagatg 290
Query: 335 gccacggacaggctgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtag 394
||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 291 gccaccgacaggctgccgtcgcggctggcgctggggagcacgaaggcgagcccctcgtac 350
Query: 395 gcgatgccgccggggcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatg 454
|||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||
Sbjct: 351 gcgatgccgccggggcccatgaacacgggccggccccagccaaagtcggcgtcgtgaatg 410
Query: 455 ggcaggcgcacccagctggtgagccccaggttggggcaccggaacgtgtgcgccccgcgg 514
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 411 ggcaggcgcacccagctggtgagcccgaggttggggcaccggaacgtgtgcgcgccgcgg 470
Query: 515 accagcgccgacaggtccggctgcagctccaggtagtccagcgctgaccggcagtacccg 574
||||||||||||||||| ||||||| |||||||||||||||||| || ||||||||| ||
Sbjct: 471 accagcgccgacaggtcaggctgcatctccaggtagtccagcgccgagcggcagtactcg 530
Query: 575 tcgtccatccggtccaacgcggcctggatc 604
| ||||||| |||| ||| |||||||||
Sbjct: 531 ttgtccatcacctccagcgccgcctggatc 560
Score = 52.0 bits (26), Expect = 5e-005
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 163 gtgcaggaactatgtgtgaaatcaaagaat-attgctgcaacctac 207
|||||||||||| ||||| ||||||||||| ||||||||| |||||
Sbjct: 123 gtgcaggaactacgtgtgtaatcaaagaatcattgctgcatcctac 168
>gb|CB880317.1|CB880317 HM06C21w HM Hordeum vulgare subsp. vulgare cDNA clone HM06C21
3-PRIME, mRNA sequence
Length = 560
Score = 432 bits (218), Expect = e-119
Identities = 302/330 (91%)
Strand = Plus / Plus
Query: 275 gatcagaagtcgtagatgagcttccggaacttctccatgtgctccgcctgcagcgagatg 334
||||||||||| |||| | |||||||||||||||||| ||||| |||||||||||||||
Sbjct: 209 gatcagaagtcaaagatcatcttccggaacttctccatatgctcggcctgcagcgagatg 268
Query: 335 gccacggacaggctgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtag 394
||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 269 gccaccgacaggctgccgtcgcggctggcgctggggagcacgaaggcgagcccctcgtac 328
Query: 395 gcgatgccgccggggcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatg 454
|||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||
Sbjct: 329 gcgatgccgccggggcccatgaacacgggccggccccagccaaagtcggcgtcgtgaatg 388
Query: 455 ggcaggcgcacccagctggtgagccccaggttggggcaccggaacgtgtgcgccccgcgg 514
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 389 ggcaggcgcacccagctggtgagcccgaggttggggcaccggaacgtgtgcgcgccgcgg 448
Query: 515 accagcgccgacaggtccggctgcagctccaggtagtccagcgctgaccggcagtacccg 574
||||||||||||||||| ||||||| |||||||||||||||||| || ||||||||| ||
Sbjct: 449 accagcgccgacaggtcaggctgcatctccaggtagtccagcgccgagcggcagtactcg 508
Query: 575 tcgtccatccggtccaacgcggcctggatc 604
| ||||||| |||| ||| |||||||||
Sbjct: 509 ttgtccatcacctccagcgccgcctggatc 538
Score = 52.0 bits (26), Expect = 5e-005
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 163 gtgcaggaactatgtgtgaaatcaaagaat-attgctgcaacctac 207
|||||||||||| ||||| ||||||||||| ||||||||| |||||
Sbjct: 101 gtgcaggaactacgtgtgtaatcaaagaatcattgctgcatcctac 146
>gb|CB881920.1|CB881920 HM11E21w HM Hordeum vulgare subsp. vulgare cDNA clone HM11E21
3-PRIME, mRNA sequence
Length = 528
Score = 432 bits (218), Expect = e-119
Identities = 302/330 (91%)
Strand = Plus / Plus
Query: 275 gatcagaagtcgtagatgagcttccggaacttctccatgtgctccgcctgcagcgagatg 334
||||||||||| |||| | |||||||||||||||||| ||||| |||||||||||||||
Sbjct: 194 gatcagaagtcaaagatcatcttccggaacttctccatatgctcggcctgcagcgagatg 253
Query: 335 gccacggacaggctgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtag 394
||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 254 gccaccgacaggctgccgtcgcggctggcgctggggagcacgaaggcgagcccctcgtac 313
Query: 395 gcgatgccgccggggcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatg 454
|||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||
Sbjct: 314 gcgatgccgccggggcccatgaacacgggccggccccagccaaagtcggcgtcgtgaatg 373
Query: 455 ggcaggcgcacccagctggtgagccccaggttggggcaccggaacgtgtgcgccccgcgg 514
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 374 ggcaggcgcacccagctggtgagcccgaggttggggcaccggaacgtgtgcgcgccgcgg 433
Query: 515 accagcgccgacaggtccggctgcagctccaggtagtccagcgctgaccggcagtacccg 574
||||||||||||||||| ||||||| |||||||||||||||||| || ||||||||| ||
Sbjct: 434 accagcgccgacaggtcaggctgcatctccaggtagtccagcgccgagcggcagtactcg 493
Query: 575 tcgtccatccggtccaacgcggcctggatc 604
| ||||||| |||| ||| |||||||||
Sbjct: 494 ttgtccatcacctccagcgccgcctggatc 523
Score = 52.0 bits (26), Expect = 5e-005
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 163 gtgcaggaactatgtgtgaaatcaaagaat-attgctgcaacctac 207
|||||||||||| ||||| ||||||||||| ||||||||| |||||
Sbjct: 86 gtgcaggaactacgtgtgtaatcaaagaatcattgctgcatcctac 131
>gb|CB880111.1|CB880111 HM05I10w HM Hordeum vulgare subsp. vulgare cDNA clone HM05I10
3-PRIME, mRNA sequence
Length = 573
Score = 430 bits (217), Expect = e-119
Identities = 286/309 (92%)
Strand = Plus / Plus
Query: 275 gatcagaagtcgtagatgagcttccggaacttctccatgtgctccgcctgcagcgagatg 334
||||||||||| |||| | |||||||||||||||||| ||||| |||||||||||||||
Sbjct: 249 gatcagaagtcaaagatcatcttccggaacttctccatatgctcggcctgcagcgagatg 308
Query: 335 gccacggacaggctgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtag 394
||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 309 gccaccgacaggctgccgtcgcggctggcgctggggagcacgaaggcgagcccctcgtac 368
Query: 395 gcgatgccgccggggcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatg 454
|||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||
Sbjct: 369 gcgatgccgccggggcccatgaacacgggccggccccagccaaagtcggcgtcgtgaatg 428
Query: 455 ggcaggcgcacccagctggtgagccccaggttggggcaccggaacgtgtgcgccccgcgg 514
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 429 ggcaggcgcacccagctggtgagcccgaggttggggcaccggaacgtgtgcgcgccgcgg 488
Query: 515 accagcgccgacaggtccggctgcagctccaggtagtccagcgctgaccggcagtacccg 574
||||||||||||||||| ||||||| |||||||||||||||||| || ||||||||| ||
Sbjct: 489 accagcgccgacaggtcaggctgcatctccaggtagtccagcgccgagcggcagtactcg 548
Query: 575 tcgtccatc 583
| |||||||
Sbjct: 549 ttgtccatc 557
Score = 52.0 bits (26), Expect = 5e-005
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 163 gtgcaggaactatgtgtgaaatcaaagaat-attgctgcaacctac 207
|||||||||||| ||||| ||||||||||| ||||||||| |||||
Sbjct: 141 gtgcaggaactacgtgtgtaatcaaagaatcattgctgcatcctac 186
>gb|CB881379.1|CB881379 HM09K05w HM Hordeum vulgare subsp. vulgare cDNA clone HM09K05
3-PRIME, mRNA sequence
Length = 549
Score = 430 bits (217), Expect = e-119
Identities = 286/309 (92%)
Strand = Plus / Plus
Query: 275 gatcagaagtcgtagatgagcttccggaacttctccatgtgctccgcctgcagcgagatg 334
||||||||||| |||| | |||||||||||||||||| ||||| |||||||||||||||
Sbjct: 227 gatcagaagtcaaagatcatcttccggaacttctccatatgctcggcctgcagcgagatg 286
Query: 335 gccacggacaggctgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtag 394
||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 287 gccaccgacaggctgccgtcgcggctggcgctggggagcacgaaggcgagcccctcgtac 346
Query: 395 gcgatgccgccggggcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatg 454
|||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||
Sbjct: 347 gcgatgccgccggggcccatgaacacgggccggccccagccaaagtcggcgtcgtgaatg 406
Query: 455 ggcaggcgcacccagctggtgagccccaggttggggcaccggaacgtgtgcgccccgcgg 514
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 407 ggcaggcgcacccagctggtgagcccgaggttggggcaccggaacgtgtgcgcgccgcgg 466
Query: 515 accagcgccgacaggtccggctgcagctccaggtagtccagcgctgaccggcagtacccg 574
||||||||||||||||| ||||||| |||||||||||||||||| || ||||||||| ||
Sbjct: 467 accagcgccgacaggtcaggctgcatctccaggtagtccagcgccgagcggcagtactcg 526
Query: 575 tcgtccatc 583
| |||||||
Sbjct: 527 ttgtccatc 535
Score = 52.0 bits (26), Expect = 5e-005
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 163 gtgcaggaactatgtgtgaaatcaaagaat-attgctgcaacctac 207
|||||||||||| ||||| ||||||||||| ||||||||| |||||
Sbjct: 119 gtgcaggaactacgtgtgtaatcaaagaatcattgctgcatcctac 164
>gb|BM097912.2|BM097912 EBpi03_SQ002_A12_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_A12 5', mRNA sequence
Length = 509
Score = 335 bits (169), Expect = 2e-090
Identities = 217/233 (93%)
Strand = Plus / Minus
Query: 275 gatcagaagtcgtagatgagcttccggaacttctccatgtgctccgcctgcagcgagatg 334
||||||||||| |||| | |||||||||||||||||| ||||| |||||||||||||||
Sbjct: 234 gatcagaagtcaaagatcatcttccggaacttctccatatgctcggcctgcagcgagatg 175
Query: 335 gccacggacaggctgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtag 394
||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 174 gccaccgacaggctgccgtcgcggctggcgctggggagcacgaaggcgagcccctcgtac 115
Query: 395 gcgatgccgccggggcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatg 454
|||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||
Sbjct: 114 gcgatgccgccggggcccatgaacacgggccggccccagccaaagtcggcgtcgtgaatg 55
Query: 455 ggcaggcgcacccagctggtgagccccaggttggggcaccggaacgtgtgcgc 507
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 54 ggcaggcgcacccagctggtgagcccgaggttggggcaccggaacgtgtgcgc 2
Score = 50.1 bits (25), Expect = 2e-004
Identities = 41/45 (91%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 164 tgcaggaactatgtgtgaaatcaaagaat-attgctgcaacctac 207
||||||||||| ||||| ||||||||||| ||||||||| |||||
Sbjct: 341 tgcaggaactacgtgtgtaatcaaagaatcattgctgcatcctac 297
>gb|CA016620.1|CA016620 HV08A21u HV Hordeum vulgare subsp. vulgare cDNA clone HV08A21
3-PRIME, mRNA sequence
Length = 512
Score = 281 bits (142), Expect = 3e-074
Identities = 244/278 (87%)
Strand = Plus / Plus
Query: 293 agcttccggaacttctccatgtgctccgcctgcagcgagatggccacggacaggctgccg 352
|||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||
Sbjct: 199 agcttccggaacttctccatgtgctccgcctgcaacgagatggcgatggacaggctgccg 258
Query: 353 tcgcggttggcgctggggagcacgaacgcgagcccctcgtaggcgatgccgccggggccc 412
|| | | ||||| ||||| |||||||| ||||||||||| ||||||||||| || |||
Sbjct: 259 tccttgctcgcgctcgggaggacgaacgccagcccctcgtacgcgatgccgccaggaccc 318
Query: 413 atgaacacgggccgcccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctg 472
|||||||| |||| |||||| || || || ||||||||||| ||||||||||||||||||
Sbjct: 319 atgaacaccggcctcccccagccaaaatcggcgtcgtggatcggcaggcgcacccagctg 378
Query: 473 gtgagccccaggttggggcaccggaacgtgtgcgccccgcggaccagcgccgacaggtcc 532
||||| || ||||||||||||||||| ||||| || || ||||||| || |||||||||
Sbjct: 379 gtgaggccgaggttggggcaccggaaagtgtgtgctccacggaccaatgctgacaggtcc 438
Query: 533 ggctgcagctccaggtagtccagcgctgaccggcagta 570
||||||| ||||||||||||||| ||||| |||||||
Sbjct: 439 ggctgcatctccaggtagtccagggctgattggcagta 476
>gb|CB859459.1|CB859459 HI10I05w HI Hordeum vulgare subsp. vulgare cDNA clone HI10I05
3-PRIME, mRNA sequence
Length = 538
Score = 281 bits (142), Expect = 3e-074
Identities = 244/278 (87%)
Strand = Plus / Plus
Query: 293 agcttccggaacttctccatgtgctccgcctgcagcgagatggccacggacaggctgccg 352
|||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||
Sbjct: 199 agcttccggaacttctccatgtgctccgcctgcaacgagatggcgatggacaggctgccg 258
Query: 353 tcgcggttggcgctggggagcacgaacgcgagcccctcgtaggcgatgccgccggggccc 412
|| | | ||||| ||||| |||||||| ||||||||||| ||||||||||| || |||
Sbjct: 259 tccttgctcgcgctcgggaggacgaacgccagcccctcgtacgcgatgccgccaggaccc 318
Query: 413 atgaacacgggccgcccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctg 472
|||||||| |||| |||||| || || || ||||||||||| ||||||||||||||||||
Sbjct: 319 atgaacaccggcctcccccagccaaaatcggcgtcgtggatcggcaggcgcacccagctg 378
Query: 473 gtgagccccaggttggggcaccggaacgtgtgcgccccgcggaccagcgccgacaggtcc 532
||||| || ||||||||||||||||| ||||| || || ||||||| || |||||||||
Sbjct: 379 gtgaggccgaggttggggcaccggaaagtgtgtgctccacggaccaatgctgacaggtcc 438
Query: 533 ggctgcagctccaggtagtccagcgctgaccggcagta 570
||||||| ||||||||||||||| ||||| |||||||
Sbjct: 439 ggctgcatctccaggtagtccagggctgattggcagta 476
>gb|AL500666.1|AL500666 AL500666 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01H10u 3', mRNA sequence
Length = 533
Score = 268 bits (135), Expect = 5e-070
Identities = 244/279 (87%), Gaps = 1/279 (0%)
Strand = Plus / Plus
Query: 293 agcttccggaacttctccatgtgctccgcctgcagcgagatggccacggacaggctgccg 352
|||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||
Sbjct: 220 agcttccggaacttctccatgtgctccgcctgcaacgagatggcgatggacaggctgccg 279
Query: 353 tcgcggttggcgctggggagcacgaacgcgagcccctcgtaggcgatgccgccggggccc 412
|| | | ||||| ||||| |||||||| ||||||||||| ||||||||||| || |||
Sbjct: 280 tccttgctcgcgctcgggaggacgaacgccagcccctcgtacgcgatgccgccaggaccc 339
Query: 413 atgaacacgggccgcccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctg 472
|||||||| |||| |||||| || || || ||||||||||| ||||||||||||||||||
Sbjct: 340 atgaacaccggcctcccccagccaaaatcggcgtcgtggatcggcaggcgcacccagctg 399
Query: 473 gtgagccccaggttggggcaccggaacgtgtgcgccccgcggaccagcgccgacaggtcc 532
||||| || ||||||||||||||||| ||||| || || ||||||| || |||||||||
Sbjct: 400 gtgaggccgaggttggggcaccggaaagtgtgtgctccacggaccaatgctgacaggtcc 459
Query: 533 ggctgcagctccaggta-gtccagcgctgaccggcagta 570
||||||| ||||||||| |||||| ||||| |||||||
Sbjct: 460 ggctgcatctccaggtangtccagggctgattggcagta 498
>gb|BU995236.1|BU995236 HM09K05r HM Hordeum vulgare subsp. vulgare cDNA clone HM09K05
5-PRIME, mRNA sequence
Length = 374
Score = 264 bits (133), Expect = 7e-069
Identities = 238/273 (87%)
Strand = Plus / Minus
Query: 669 aagatcacgttgccgaagtagccctccggaagcggcggctgcagccgctgccgcccgtcc 728
||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 313 aagatgacgttgccgaagtagccctccgggagcgcgggctgcagccgctgccgcccgtcc 254
Query: 729 gtggcgcagtacagcttggtgggctggtcggccggcaggccgcgcgccagggacgcgcac 788
|||||||||||||||||||||||||| || | | |||||| || |||||||||||||||
Sbjct: 253 gtggcgcagtacagcttggtgggctgctctggggacaggccacgggccagggacgcgcac 194
Query: 789 cgccacacgtgcgccgccagcacagcgtacgtgctgaaccgcggcgcgccctcgcgcgcg 848
||||||||||||||| | ||||| ||||| ||||||||||||||||||||||||| || |
Sbjct: 193 cgccacacgtgcgccccgagcaccgcgtaggtgctgaaccgcggcgcgccctcgcccgtg 134
Query: 849 gggacctgcgaacggaggcggacgagctcggcgcgggagagcttgaagatagccacggct 908
|||| ||| | ||||||||| |||| ||||||||| | ||||||||||| |||| ||
Sbjct: 133 gggagctgggcgcggaggcggccgaggtcggcgcggcacagcttgaagatgtccacagcc 74
Query: 909 gtgggcggcgtcgccggcttggacgtgagggcc 941
||||| |||| ||||||||| |||||||||
Sbjct: 73 gtgggtggcgcttccggcttggcggtgagggcc 41
>gb|BG417675.1|BG417675 HVSMEk0019B08f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0019B08f, mRNA sequence
Length = 444
Score = 250 bits (126), Expect = 1e-064
Identities = 325/390 (83%), Gaps = 1/390 (0%)
Strand = Plus / Minus
Query: 509 ccgcggaccagcgccgacaggtccggctgcagctccaggtagtccagcgctgaccggcag 568
||||||||||||||||||||||| ||||||| |||||||||||||||||| || ||||||
Sbjct: 441 ccgcggaccagcgccgacaggtcaggctgcatctccaggtagtccagcgccgagcggcag 382
Query: 569 tacccgtcgtccatccggtccaacgcggcctggatcacggacgcgccctctgccaccccg 628
||| ||| ||||||| |||| ||| || |||||| || |||||| || |||| | |
Sbjct: 381 tactcgttgtccatcacctccagcgccgcatggatcgtggtcgcgccgtccgccagcgag 322
Query: 629 gccgtcaccgtgccggcgttggccagcggcgtcgccgtgaaagatcacgttgccgaagta 688
| |||||| |||| || || |||||||| || ||||| ||| ||||||||||||||
Sbjct: 321 ccagtcaccttgcccgccaccgcgagcggcgtggcggtgaa-gatgacgttgccgaagta 263
Query: 689 gccctccggaagcggcggctgcagccgctgccgcccgtccgtggcgcagtacagcttggt 748
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gccctccgggagcgcgggctgcagccgctgccgcccgtccgtggcgcagtacagcttggt 203
Query: 749 gggctggtcggccggcaggccgcgcgccagggacgcgcaccgccacacgtgcgccgccag 808
|||||| | | | |||||| || |||||||||| ||||||||||||||||||| | ||
Sbjct: 202 gggctgctttggggacaggccacgggccagggacgggcaccgccacacgtgcgccccgag 143
Query: 809 cacagcgtacgtgctgaaccgcggcgcgccctcgcgcgcggggacctgcgaacggaggcg 868
||| | ||| ||| |||||||||| |||||||||| || |||| ||| | |||| |||
Sbjct: 142 caccgggtaggtggtgaaccgcggggcgccctcgcccgttgggagctgggcccggaagcg 83
Query: 869 gacgagctcggcgcgggagagcttgaagat 898
| |||| | || |||||| |||||||||||
Sbjct: 82 gccgaggttggggcgggacagcttgaagat 53
>gb|BU978006.1|BU978006 HA12G16r HA Hordeum vulgare subsp. vulgare cDNA clone HA12G16
5-PRIME, mRNA sequence
Length = 543
Score = 238 bits (120), Expect = 4e-061
Identities = 222/256 (86%)
Strand = Plus / Minus
Query: 315 gctccgcctgcagcgagatggccacggacaggctgccgtcgcggttggcgctggggagca 374
|||||||||||| ||||||||| | ||||||||||||||| | | ||||| ||||| |
Sbjct: 543 gctccgcctgcaacgagatggcgatggacaggctgccgtccttgctcgcgctcgggagga 484
Query: 375 cgaacgcgagcccctcgtaggcgatgccgccggggcccatgaacacgggccgcccccacc 434
||||||| ||||||||||| ||||||||||| || ||||||||||| |||| |||||| |
Sbjct: 483 cgaacgccagcccctcgtacgcgatgccgccaggacccatgaacaccggcctcccccagc 424
Query: 435 cgaagtccgcgtcgtggatgggcaggcgcacccagctggtgagccccaggttggggcacc 494
| || || ||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct: 423 caaaatcggcgtcgtggatcggcaggcgcacccagctggtgaggccgaggttggggcacc 364
Query: 495 ggaacgtgtgcgccccgcggaccagcgccgacaggtccggctgcagctccaggtagtcca 554
|||| ||||| || || ||||||| || |||||||||||||||| ||||||||||||||
Sbjct: 363 ggaaagtgtgtgctccacggaccaatgctgacaggtccggctgcatctccaggtagtcca 304
Query: 555 gcgctgaccggcagta 570
| ||||| |||||||
Sbjct: 303 gggctgattggcagta 288
Score = 65.9 bits (33), Expect = 3e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 699 agcggcggctgcagccgctgccgcccgtccgtggcgcagtacagcttggtgggctggtcg 758
||||| ||||||||||| || ||||| || |||||||| ||||||||||||||||| ||
Sbjct: 160 agcgggggctgcagccgttgtcgcccatcggtggcgcaatacagcttggtgggctgttcc 101
Query: 759 gccggcaggccgcgcgccagggacgcgcaccgccacacgtgcgccgccagcacagcgtac 818
| | |||| |||||| ||||| | || ||||| || || || || ||||| || |||
Sbjct: 100 ggagccaggttgcgcgcaagggagacacagcgccagacatgtgcagctagcactgcatac 41
Query: 819 gtgctgaaccgcggcgc 835
||||||||||| |||||
Sbjct: 40 gtgctgaaccgtggcgc 24
>gb|BM815960.1|BM815960 HC05G03_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC05G03_T3.ab1 similar to Anthranilate
N-benzoyltransferase,Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 850
Score = 230 bits (116), Expect = 1e-058
Identities = 279/332 (84%), Gaps = 6/332 (1%)
Strand = Plus / Minus
Query: 807 agcacagcgtacgtgctgaaccgcggcgcgccctcgcgcgcggggacctgcgaacggagg 866
||||| ||||| ||| ||||||||||||||||||||| || ||||| ||| | ||||||
Sbjct: 420 agcaccgcgtaggtgatgaaccgcggcgcgccctcgcccgtggggagctgggcgcggagg 361
Query: 867 cggacgagctcggcgcgggagagcttgaagatagccacggctgtgggcggcgtcgccggc 926
||| |||| ||||||||| | ||||||||||| |||| || ||||| |||| |||||
Sbjct: 360 cggccgaggtcggcgcggcacagcttgaagatgtccacagccgtgggtggcgcttccggc 301
Query: 927 ttggacgtgagggccgcctgtggcggctcagat---agcatggcgggcgccggctggtac 983
|||| ||||||| |||| ||| ||| || |||||||||||||| |||||||||
Sbjct: 300 ttggcggtgaggg---cctgcggctcctccgagtccagcatggcgggcgcgggctggtac 244
Query: 984 tcgatgtgcgggtagcccggggtcggcggatcgcgcgcgcggaggagcgaccggtcaatg 1043
||||||||||||| | |||||||||||| ||||| ||||||||||| | |||||||||
Sbjct: 243 tcgatgtgcgggtgggacggggtcggcgggtcgcgtgcgcggaggagggtgcggtcaatg 184
Query: 1044 aagggcatgccggcgatcgggacgccgcggcagaggtccgcccacgagttgatgaagtgc 1103
|| |||||| |||| ||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct: 183 aacggcatgacggcaatcggcacgccgcggcagaggtcggcccatgagttgatgaagtgc 124
Query: 1104 agtccggagaagccgccggccacgtggtgctg 1135
|| |||||||||||| | || |||||||||||
Sbjct: 123 aggccggagaagccgtcagcgacgtggtgctg 92
Score = 63.9 bits (32), Expect = 1e-008
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 1165 cacttgaagtgggtcacctggagcacgagcagcgggaaggaggagatg 1212
||||||||||||||||||||| |||||| |||||| |||||||||||
Sbjct: 63 cacttgaagtgggtcacctgggccacgaggagcgggtaggaggagatg 16
>gb|BF256845.2|BF256845 HVSMEf0011C19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011C19f, mRNA sequence
Length = 582
Score = 228 bits (115), Expect = 4e-058
Identities = 240/279 (86%), Gaps = 2/279 (0%)
Strand = Plus / Minus
Query: 293 agcttccggaacttctccatgtgctccgcctgcagcga-gatggccacggacaggctgcc 351
|||| ||||||||||||||||||||||||||||| ||| |||||| | ||||||||| |
Sbjct: 511 agctcccggaacttctccatgtgctccgcctgcaacgaagatggcaatggacaggctccg 452
Query: 352 gtcgcggttggcgctggggagcacgaacgcgagcccctcgtaggcgatgccgccggggcc 411
||| | | ||||| ||||| |||||||| ||||||||||| | ||||||||| || ||
Sbjct: 451 gtccttgctcgcgctcgggaggacgaacgccagcccctcgtacg-gatgccgccaggacc 393
Query: 412 catgaacacgggccgcccccacccgaagtccgcgtcgtggatgggcaggcgcacccagct 471
||||||||| |||| |||||| || || || ||||||||||| |||||||||||||||||
Sbjct: 392 catgaacaccggcctcccccagccaaaatcggcgtcgtggatcggcaggcgcacccagct 333
Query: 472 ggtgagccccaggttggggcaccggaacgtgtgcgccccgcggaccagcgccgacaggtc 531
|||||| || ||||||||||||||||| ||||| || || ||||||| || ||||||||
Sbjct: 332 ggtgaggccgaggttggggcaccggaaagtgtgtgctccacggaccaatgctgacaggtc 273
Query: 532 cggctgcagctccaggtagtccagcgctgaccggcagta 570
|||||||| ||||||||||||||| ||||| |||||||
Sbjct: 272 cggctgcatctccaggtagtccagggctgattggcagta 234
Score = 63.9 bits (32), Expect = 1e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 699 agcggcggctgcagccgctgccgcccgtccgtggcgcagtacagcttggtgggctg 754
||||| ||||||||||| || ||||| || |||||||| |||||||||||||||||
Sbjct: 106 agcgggggctgcagccgttgtcgcccatcggtggcgcaatacagcttggtgggctg 51
>gb|BU977226.1|BU977226 HA11A22u HA Hordeum vulgare subsp. vulgare cDNA clone HA11A22
3-PRIME, mRNA sequence
Length = 395
Score = 208 bits (105), Expect = 4e-052
Identities = 174/197 (88%)
Strand = Plus / Plus
Query: 293 agcttccggaacttctccatgtgctccgcctgcagcgagatggccacggacaggctgccg 352
|||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||
Sbjct: 199 agcttccggaacttctccatgtgctccgcctgcaacgagatggcgatggacaggctgccg 258
Query: 353 tcgcggttggcgctggggagcacgaacgcgagcccctcgtaggcgatgccgccggggccc 412
|| | | ||||| ||||| |||||||| ||||||||||| ||||||||||| || |||
Sbjct: 259 tccttgctcgcgctcgggaggacgaacgccagcccctcgtacgcgatgccgccaggaccc 318
Query: 413 atgaacacgggccgcccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctg 472
|||||||| |||| |||||| || || || ||||||||||| ||||||||||||||||||
Sbjct: 319 atgaacaccggcctcccccagccaaaatcggcgtcgtggatcggcaggcgcacccagctg 378
Query: 473 gtgagccccaggttggg 489
||||| || ||||||||
Sbjct: 379 gtgaggccgaggttggg 395
>gb|BU995764.1|BU995764 HM11E21r HM Hordeum vulgare subsp. vulgare cDNA clone HM11E21
5-PRIME, mRNA sequence
Length = 541
Score = 198 bits (100), Expect = 3e-049
Identities = 157/176 (89%)
Strand = Plus / Minus
Query: 960 agcatggcgggcgccggctggtactcgatgtgcgggtagcccggggtcggcggatcgcgc 1019
|||||||||||||| |||||||||||||||||||||| | |||||||||||| |||||
Sbjct: 422 agcatggcgggcgcgggctggtactcgatgtgcgggtgggacggggtcggcgggtcgcgt 363
Query: 1020 gcgcggaggagcgaccggtcaatgaagggcatgccggcgatcgggacgccgcggcagagg 1079
||||||||||| | ||||||||||| |||||| |||| ||||| |||||||||||||||
Sbjct: 362 gcgcggaggagggtgcggtcaatgaacggcatgacggcaatcggcacgccgcggcagagg 303
Query: 1080 tccgcccacgagttgatgaagtgcagtccggagaagccgccggccacgtggtgctg 1135
|| ||||| ||||||||||||||||| |||||||||||| | || |||||||||||
Sbjct: 302 tcggcccatgagttgatgaagtgcaggccggagaagccgtcagcgacgtggtgctg 247
Score = 85.7 bits (43), Expect = 4e-015
Identities = 89/103 (86%), Gaps = 1/103 (0%)
Strand = Plus / Minus
Query: 1165 cacttgaagtgggtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaag 1224
||||||||||||||||||||| |||||| |||||| ||||||||||| | | ||||||
Sbjct: 218 cacttgaagtgggtcacctgggccacgaggagcgggtaggaggagatgcccccggtgaag 159
Query: 1225 tcgacggtggggatgaggcgctcgagatcacctggtgggcgcg 1267
||||| | |||||||||||||| ||| || | |||||||||||
Sbjct: 158 tcgaccgcggggatgaggcgcttgaggtc-catggtgggcgcg 117
Score = 50.1 bits (25), Expect = 2e-004
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 861 cggaggcggacgagctcggcgcgggagagcttgaagatagccacggctgtgggcggcgtc 920
||||||||| |||| ||||||||| | ||||||||||| |||| || ||||| ||||
Sbjct: 521 cggaggcggccgaggtcggcgcggcacagcttgaagatgtccacagccgtgggtggcgct 462
Query: 921 gccggcttggacgtgagggcc 941
||||||||| |||||||||
Sbjct: 461 tccggcttggcggtgagggcc 441
>gb|BU999255.1|BU999255 HI13O20r HI Hordeum vulgare subsp. vulgare cDNA clone HI13O20
5-PRIME, mRNA sequence
Length = 561
Score = 198 bits (100), Expect = 3e-049
Identities = 157/176 (89%)
Strand = Plus / Minus
Query: 960 agcatggcgggcgccggctggtactcgatgtgcgggtagcccggggtcggcggatcgcgc 1019
|||||||||||||| |||||||||||||||||||||| | |||||||||||| |||||
Sbjct: 448 agcatggcgggcgcgggctggtactcgatgtgcgggtgggacggggtcggcgggtcgcgt 389
Query: 1020 gcgcggaggagcgaccggtcaatgaagggcatgccggcgatcgggacgccgcggcagagg 1079
||||||||||| | ||||||||||| |||||| |||| ||||| |||||||||||||||
Sbjct: 388 gcgcggaggagggtgcggtcaatgaacggcatgacggcaatcggcacgccgcggcagagg 329
Query: 1080 tccgcccacgagttgatgaagtgcagtccggagaagccgccggccacgtggtgctg 1135
|| ||||| ||||||||||||||||| |||||||||||| | || |||||||||||
Sbjct: 328 tcggcccatgagttgatgaagtgcaggccggagaagccgtcagcgacgtggtgctg 273
Score = 85.7 bits (43), Expect = 4e-015
Identities = 89/103 (86%), Gaps = 1/103 (0%)
Strand = Plus / Minus
Query: 1165 cacttgaagtgggtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaag 1224
||||||||||||||||||||| |||||| |||||| ||||||||||| | | ||||||
Sbjct: 244 cacttgaagtgggtcacctgggccacgaggagcgggtaggaggagatgcccccggtgaag 185
Query: 1225 tcgacggtggggatgaggcgctcgagatcacctggtgggcgcg 1267
||||| | |||||||||||||| ||| || | |||||||||||
Sbjct: 184 tcgaccgcggggatgaggcgcttgaggtc-catggtgggcgcg 143
Score = 44.1 bits (22), Expect = 0.012
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 861 cggaggcggacgagctcggcgcgggagagcttgaagat 898
||||||||| |||| ||||||||| | |||||||||||
Sbjct: 548 cggaggcggccgaggtcggcgcggcacagcttgaagat 511
>gb|CD663895.1|CD663895 UCRHV18_07aa08_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_07aa08, mRNA sequence
Length = 287
Score = 186 bits (94), Expect = 1e-045
Identities = 166/190 (87%)
Strand = Plus / Plus
Query: 298 ccggaacttctccatgtgctccgcctgcagcgagatggccacggacaggctgccgtcgcg 357
||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||
Sbjct: 90 ccggaacttctccatgtgctccgcctgcaacgagatggcgatggacaggctgccgtcctt 149
Query: 358 gttggcgctggggagcacgaacgcgagcccctcgtaggcgatgccgccggggcccatgaa 417
| | |||| ||||| |||||||| ||||||||||| ||||||||||| || ||||||||
Sbjct: 150 gctcccgctcgggaggacgaacgccagcccctcgtacgcgatgccgccaggacccatgaa 209
Query: 418 cacgggccgcccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctggtgag 477
||| |||| |||||| || || || ||||||||||| |||||||||||||||||||||||
Sbjct: 210 caccggcctcccccagccaaaatcggcgtcgtggatcggcaggcgcacccagctggtgag 269
Query: 478 ccccaggttg 487
|| ||||||
Sbjct: 270 gccgaggttg 279
>gb|BU994581.1|BU994581 HM07I10r HM Hordeum vulgare subsp. vulgare cDNA clone HM07I10
5-PRIME, mRNA sequence
Length = 587
Score = 117 bits (59), Expect = 1e-024
Identities = 89/99 (89%)
Strand = Plus / Minus
Query: 1037 gtcaatgaagggcatgccggcgatcgggacgccgcggcagaggtccgcccacgagttgat 1096
||||||||| |||||| |||| ||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 587 gtcaatgaacggcatgacggcaatcggcacgccgcggcagaggtcggcccatgagttgat 528
Query: 1097 gaagtgcagtccggagaagccgccggccacgtggtgctg 1135
||||||||| |||||||||||| | || |||||||||||
Sbjct: 527 gaagtgcaggccggagaagccgtcagcgacgtggtgctg 489
Score = 85.7 bits (43), Expect = 4e-015
Identities = 89/103 (86%), Gaps = 1/103 (0%)
Strand = Plus / Minus
Query: 1165 cacttgaagtgggtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaag 1224
||||||||||||||||||||| |||||| |||||| ||||||||||| | | ||||||
Sbjct: 460 cacttgaagtgggtcacctgggccacgaggagcgggtaggaggagatgcccccggtgaag 401
Query: 1225 tcgacggtggggatgaggcgctcgagatcacctggtgggcgcg 1267
||||| | |||||||||||||| ||| || | |||||||||||
Sbjct: 400 tcgaccgcggggatgaggcgcttgaggtc-catggtgggcgcg 359
>gb|AL503281.1|AL503281 AL503281 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01H10T 5', mRNA sequence
Length = 700
Score = 101 bits (51), Expect = 6e-020
Identities = 91/103 (88%), Gaps = 1/103 (0%)
Strand = Plus / Minus
Query: 1165 cacttgaagtgggtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaag 1224
|||||||||| ||||||||| |||||||| |||||||||||||| |||||||| ||| ||
Sbjct: 326 cacttgaagtaggtcacctgaagcacgaggagcgggaaggaggatatgtcgtcggtgtag 267
Query: 1225 tcgacggtggggatgaggcgctcgagatcacctggtgggcgcg 1267
||||||| ||||||||||||| ||| || | |||||||||||
Sbjct: 266 tcgacgggcgggatgaggcgcttgaggtc-catggtgggcgcg 225
Score = 60.0 bits (30), Expect = 2e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 1035 cggtcaatgaagggcatgccggcgatcgggacgccgcggcagaggtccgcccacgagttg 1094
||||| |||||||||||| | ||||| || |||||||||||||| | ||||||||||
Sbjct: 455 cggtcgatgaagggcatgactgcgattttaactccgcggcagaggtcagaccacgagttg 396
Query: 1095 atgaagtgca 1104
||||||||||
Sbjct: 395 atgaagtgca 386
Score = 56.0 bits (28), Expect = 3e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 807 agcacagcgtacgtgctgaaccgcggcgcgccctcgcgcgcggggacctgcgaacggagg 866
||||| || |||||||||||||| ||||| || || | | ||||| ||||||||| |||
Sbjct: 681 agcactgcatacgtgctgaaccgtggcgcaccttcacctgtggggagctgcgaacgcagg 622
Query: 867 cggacgagctcggcgcgggagagcttgaagat 898
||| | ||||| | ||||| ||||||||||||
Sbjct: 621 cggccaagctctgagcgggtgagcttgaagat 590
>gb|BF263303.2|BF263303 HV_CEa0006G07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006G07f, mRNA sequence
Length = 590
Score = 101 bits (51), Expect = 6e-020
Identities = 91/103 (88%), Gaps = 1/103 (0%)
Strand = Plus / Minus
Query: 1165 cacttgaagtgggtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaag 1224
|||||||||| ||||||||| |||||||| |||||||||||||| |||||||| ||| ||
Sbjct: 268 cacttgaagtaggtcacctgaagcacgaggagcgggaaggaggatatgtcgtcggtgtag 209
Query: 1225 tcgacggtggggatgaggcgctcgagatcacctggtgggcgcg 1267
||||||| ||||||||||||| ||| || | |||||||||||
Sbjct: 208 tcgacgggcgggatgaggcgcttgaggtc-catggtgggcgcg 167
Score = 60.0 bits (30), Expect = 2e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 1035 cggtcaatgaagggcatgccggcgatcgggacgccgcggcagaggtccgcccacgagttg 1094
||||| |||||||||||| | ||||| || |||||||||||||| | ||||||||||
Sbjct: 397 cggtcgatgaagggcatgactgcgattttaactccgcggcagaggtcagaccacgagttg 338
Query: 1095 atgaagtgca 1104
||||||||||
Sbjct: 337 atgaagtgca 328
Score = 48.1 bits (24), Expect = 8e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 854 ctgcgaacggaggcggacgagctcggcgcgggagagcttgaagatagccacggctgtggg 913
||||||||| |||||| | ||||| | ||||| |||||||||||| |||| || |||||
Sbjct: 575 ctgcgaacgcaggcggccaagctctgagcgggtgagcttgaagatgtccacagcagtggg 516
Query: 914 cggcgtcgccggcttg 929
|||| ||| ||||||
Sbjct: 515 aggcggcgctggcttg 500
>gb|CA018243.1|CA018243 HV08A21r HV Hordeum vulgare subsp. vulgare cDNA clone HV08A21
5-PRIME, mRNA sequence
Length = 614
Score = 101 bits (51), Expect = 6e-020
Identities = 91/103 (88%), Gaps = 1/103 (0%)
Strand = Plus / Minus
Query: 1165 cacttgaagtgggtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaag 1224
|||||||||| ||||||||| |||||||| |||||||||||||| |||||||| ||| ||
Sbjct: 477 cacttgaagtaggtcacctgaagcacgaggagcgggaaggaggatatgtcgtcggtgtag 418
Query: 1225 tcgacggtggggatgaggcgctcgagatcacctggtgggcgcg 1267
||||||| ||||||||||||| ||| || | |||||||||||
Sbjct: 417 tcgacgggcgggatgaggcgcttgaggtc-catggtgggcgcg 376
Score = 60.0 bits (30), Expect = 2e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 1035 cggtcaatgaagggcatgccggcgatcgggacgccgcggcagaggtccgcccacgagttg 1094
||||| |||||||||||| | ||||| || |||||||||||||| | ||||||||||
Sbjct: 606 cggtcgatgaagggcatgactgcgattttaactccgcggcagaggtcagaccacgagttg 547
Query: 1095 atgaagtgca 1104
||||||||||
Sbjct: 546 atgaagtgca 537
>gb|BI957745.1|BI957745 HVSMEn0010P23f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0010P23f,
mRNA sequence
Length = 648
Score = 93.7 bits (47), Expect = 1e-017
Identities = 90/103 (87%), Gaps = 1/103 (0%)
Strand = Plus / Minus
Query: 1165 cacttgaagtgggtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaag 1224
|||||||||| ||||||||| |||||||| |||||||||||||| |||||||| ||| ||
Sbjct: 301 cacttgaagtaggtcacctgaagcacgaggagcgggaaggaggatatgtcgtcggtgtag 242
Query: 1225 tcgacggtggggatgaggcgctcgagatcacctggtgggcgcg 1267
|| |||| ||||||||||||| ||| || | |||||||||||
Sbjct: 241 tccacgggcgggatgaggcgcttgaggtc-catggtgggcgcg 200
Score = 56.0 bits (28), Expect = 3e-006
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 1005 gtcggcggatcgcgcgcgcggaggagcgaccggtcaatgaagggcatgccggcgatcggg 1064
||||||||||| || || |||| ||| | ||||| |||||||||||| | |||||
Sbjct: 460 gtcggcggatcacgagcacggacgagagtgcggtcgatgaagggcatgactgcgatttta 401
Query: 1065 acgccgcggcagaggtccgcccacgagttgatgaagtgca 1104
|| || ||||||||||| | ||||||||||||||||||||
Sbjct: 400 actccacggcagaggtcagaccacgagttgatgaagtgca 361
Score = 46.1 bits (23), Expect = 0.003
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 816 tacgtgctgaaccgcggcgcgccctcgcgcgcggggacctgcgaacggaggcggacgagc 875
|||||||||||||| ||||| || || | | ||||| ||| ||||| |||||| | |||
Sbjct: 646 tacgtgctgaaccgtggcgcaccttcacctgtggggagctgtgaacgcaggcgggcaagc 587
Query: 876 tcggcgcgggagagcttgaagat 898
|| | ||||| ||||||||||||
Sbjct: 586 tctgagcgggtgagcttgaagat 564
>gb|BI960133.1|BI960133 HVSMEn0023G02f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0023G02f,
mRNA sequence
Length = 616
Score = 93.7 bits (47), Expect = 1e-017
Identities = 90/103 (87%), Gaps = 1/103 (0%)
Strand = Plus / Minus
Query: 1165 cacttgaagtgggtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaag 1224
|||||||||| ||||||||| |||||||| |||||||||||||| |||||||| ||| ||
Sbjct: 521 cacttgaagtaggtcacctgaagcacgaggagcgggaaggaggatatgtcgtcggtgtag 462
Query: 1225 tcgacggtggggatgaggcgctcgagatcacctggtgggcgcg 1267
|| |||| ||||||||||||| ||| || | |||||||||||
Sbjct: 461 tccacgggcgggatgaggcgcttgaggtc-catggtgggcgcg 420
Score = 42.1 bits (21), Expect = 0.049
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 1072 ggcagaggtccgcccacgagttgatgaagtgca 1104
|||||||||| | |||| |||||||||||||||
Sbjct: 613 ggcagaggtcagaccacaagttgatgaagtgca 581
>gb|BI960627.1|BI960627 HVSMEn0025G22f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0025G22f,
mRNA sequence
Length = 675
Score = 93.7 bits (47), Expect = 1e-017
Identities = 90/103 (87%), Gaps = 1/103 (0%)
Strand = Plus / Minus
Query: 1165 cacttgaagtgggtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaag 1224
|||||||||| ||||||||| |||||||| |||||||||||||| |||||||| ||| ||
Sbjct: 522 cacttgaagtaggtcacctgaagcacgaggagcgggaaggaggatatgtcgtcggtgtag 463
Query: 1225 tcgacggtggggatgaggcgctcgagatcacctggtgggcgcg 1267
|| |||| ||||||||||||| ||| || | |||||||||||
Sbjct: 462 tccacgggcgggatgaggcgcttgaggtc-catggtgggcgcg 421
Score = 52.0 bits (26), Expect = 5e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 1071 cggcagaggtccgcccacgagttgatgaagtgca 1104
||||||||||| | ||||||||||||||||||||
Sbjct: 615 cggcagaggtcagaccacgagttgatgaagtgca 582
>gb|BM815962.1|BM815962 HB108B11_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB108B11_SK.ab1 similar to Anthranilate
N-benzoyltransferase,Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 882
Score = 85.7 bits (43), Expect = 4e-015
Identities = 184/231 (79%)
Strand = Plus / Minus
Query: 699 agcggcggctgcagccgctgccgcccgtccgtggcgcagtacagcttggtgggctggtcg 758
||||| ||||||||||| || ||||| || |||||||| ||||||||||||||||| ||
Sbjct: 630 agcgggggctgcagccgttgtcgcccatcggtggcgcaatacagcttggtgggctgttcc 571
Query: 759 gccggcaggccgcgcgccagggacgcgcaccgccacacgtgcgccgccagcacagcgtac 818
| | |||| |||||| ||||| | || ||||| || || || || ||||| || ||
Sbjct: 570 ggagccaggttgcgcgcaagggagacacagcgccagacatgtgcagctagcactgcatat 511
Query: 819 gtgctgaaccgcggcgcgccctcgcgcgcggggacctgcgaacggaggcggacgagctcg 878
||||||||||| ||||| || || | | ||||| ||||||||| |||||| | |||||
Sbjct: 510 gtgctgaaccgtggcgcaccttcacctgtggggagctgcgaacgcaggcggccaagctct 451
Query: 879 gcgcgggagagcttgaagatagccacggctgtgggcggcgtcgccggcttg 929
| ||||| |||||||||||| |||| || ||||| |||| ||| ||||||
Sbjct: 450 gagcgggtgagcttgaagatgtccacagcagtgggaggcggcgctggcttg 400
Score = 81.8 bits (41), Expect = 6e-014
Identities = 93/108 (86%), Gaps = 2/108 (1%)
Strand = Plus / Minus
Query: 450 ggatgggcaggcgcaccc-agctggtgagccccaggttggggcaccggaac-gtgtgcgc 507
|||| ||||||||||||| |||||||||| | ||||||||||| ||||| ||||| ||
Sbjct: 881 ggatcggcaggcgcaccccagctggtgagncgaaggttggggcaacggaaaagtgtgtgc 822
Query: 508 cccgcggaccagcgccgacaggtccggctgcagctccaggtagtccag 555
|| ||||||| || |||||||||||||||| |||||||||||||||
Sbjct: 821 tccacggaccaatgctgacaggtccggctgcatctccaggtagtccag 774
Score = 60.0 bits (30), Expect = 2e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 1035 cggtcaatgaagggcatgccggcgatcgggacgccgcggcagaggtccgcccacgagttg 1094
||||| |||||||||||| | ||||| || |||||||||||||| | ||||||||||
Sbjct: 297 cggtcgatgaagggcatgactgcgattttaactccgcggcagaggtcagaccacgagttg 238
Query: 1095 atgaagtgca 1104
||||||||||
Sbjct: 237 atgaagtgca 228
>gb|BQ762356.1|BQ762356 EBro01_SQ005_H17_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_H17 5', mRNA sequence
Length = 612
Score = 69.9 bits (35), Expect = 2e-010
Identities = 87/103 (84%), Gaps = 1/103 (0%)
Strand = Plus / Minus
Query: 1165 cacttgaagtgggtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaag 1224
||||||||||||||||||||| ||| || |||||| || |||||||| | | ||||||
Sbjct: 566 cacttgaagtgggtcacctgggccacaaggagcgggtagaaggagatgcccccggtgaag 507
Query: 1225 tcgacggtggggatgaggcgctcgagatcacctggtgggcgcg 1267
||||| | |||||||||||||| ||| || | |||||||||||
Sbjct: 506 tcgaccgcggggatgaggcgcttgaggtc-catggtgggcgcg 465
>gb|BU977225.1|BU977225 HA11A22r HA Hordeum vulgare subsp. vulgare cDNA clone HA11A22
5-PRIME, mRNA sequence
Length = 218
Score = 65.9 bits (33), Expect = 3e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 699 agcggcggctgcagccgctgccgcccgtccgtggcgcagtacagcttggtgggctggtcg 758
||||| ||||||||||| || ||||| || |||||||| ||||||||||||||||| ||
Sbjct: 160 agcgggggctgcagccgttgtcgcccatcggtggcgcaatacagcttggtgggctgttcc 101
Query: 759 gccggcaggccgcgcgccagggacgcgcaccgccacacgtgcgccgccagcacagcgtac 818
| | |||| |||||| ||||| | || ||||| || || || || ||||| || |||
Sbjct: 100 ggagccaggttgcgcgcaagggagacacagcgccagacatgtgcagctagcactgcatac 41
Query: 819 gtgctgaaccgcggcgc 835
||||||||||| |||||
Sbjct: 40 gtgctgaaccgtggcgc 24
>gb|BI959113.1|BI959113 HVSMEn0018D20f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0018D20f,
mRNA sequence
Length = 644
Score = 60.0 bits (30), Expect = 2e-007
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 1165 cacttgaagtgggtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaag 1224
||||| |||| ||||||||| ||||| || ||||||||| || | |||||||| ||| ||
Sbjct: 521 cacttaaagtaggtcacctgaagcacaaggagcgggaagaagaatatgtcgtcggtgtag 462
Query: 1225 tcgacggtggggatgaggcgct 1246
|| |||| |||||||||||||
Sbjct: 461 tccacgggcgggatgaggcgct 440
Score = 44.1 bits (22), Expect = 0.012
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 1071 cggcagaggtccgcccacgagttgatgaagtgca 1104
||||||||||| | |||||| |||||||||||||
Sbjct: 615 cggcagaggtcagaccacgaattgatgaagtgca 582
>gb|BE519520.1|BE519520 HV_CEb0016L18f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0016L18f, mRNA sequence
Length = 516
Score = 58.0 bits (29), Expect = 8e-007
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 1199 ggaaggaggagatgtcgtccgtgaagtcgacggtggggatgaggcgctcgagatcacctg 1258
|||||||||| |||||||| ||| ||||||||| ||||||||||||| ||| || | ||
Sbjct: 515 ggaaggaggatatgtcgtcggtgtagtcgacgggcgggatgaggcgcttgaggtc-catg 457
Query: 1259 gtgggcgcg 1267
|||||||||
Sbjct: 456 gtgggcgcg 448
>gb|BJ452055.1|BJ452055 BJ452055 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37j04 5', mRNA sequence
Length = 410
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 428 ccccacccgaagtccgcgtcgtggatgggcaggcgcacccagct 471
||||| |||||||| |||||||||||||||| || || ||||||
Sbjct: 62 ccccagccgaagtcggcgtcgtggatgggcatgcccagccagct 19
>gb|BJ459613.1|BJ459613 BJ459613 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37j04 3', mRNA sequence
Length = 317
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 428 ccccacccgaagtccgcgtcgtggatgggcaggcgcacccagct 471
||||| |||||||| |||||||||||||||| || || ||||||
Sbjct: 256 ccccagccgaagtcggcgtcgtggatgggcatgcccagccagct 299
>gb|BI777397.2|BI777397 EBro04_SQ001_B15_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_B15 5', mRNA sequence
Length = 322
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 428 ccccacccgaagtccgcgtcgtggatgggcaggcgcacccagct 471
||||| |||||||| |||||||||||||||| || || ||||||
Sbjct: 127 ccccagccgaagtcggcgtcgtggatgggcatgcccagccagct 84
>gb|BU982246.1|BU982246 HA25P06r HA Hordeum vulgare subsp. vulgare cDNA clone HA25P06
5-PRIME, mRNA sequence
Length = 563
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 428 ccccacccgaagtccgcgtcgtggatgggcaggcgcacccagct 471
||||| |||||||| |||||||||||||||| || || ||||||
Sbjct: 300 ccccagccgaagtcggcgtcgtggatgggcatgcccagccagct 257
>gb|BU996564.1|BU996564 HM14A08r HM Hordeum vulgare subsp. vulgare cDNA clone HM14A08
5-PRIME, mRNA sequence
Length = 556
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 428 ccccacccgaagtccgcgtcgtggatgggcaggcgcacccagct 471
||||| |||||||| |||||||||||||||| || || ||||||
Sbjct: 486 ccccagccgaagtcggcgtcgtggatgggcatgcccagccagct 443
>gb|CB858711.1|CB858711 HI08B07w HI Hordeum vulgare subsp. vulgare cDNA clone HI08B07
3-PRIME, mRNA sequence
Length = 583
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 428 ccccacccgaagtccgcgtcgtggatgggcaggcgcacccagct 471
||||| |||||||| |||||||||||||||| || || ||||||
Sbjct: 312 ccccagccgaagtcggcgtcgtggatgggcatgcccagccagct 355
>gb|CB858932.1|CB858932 HI08M05w HI Hordeum vulgare subsp. vulgare cDNA clone HI08M05
3-PRIME, mRNA sequence
Length = 521
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 428 ccccacccgaagtccgcgtcgtggatgggcaggcgcacccagct 471
||||| |||||||| |||||||||||||||| || || ||||||
Sbjct: 362 ccccagccgaagtcggcgtcgtggatgggcatgcccagccagct 405
>gb|CK125579.1|CK125579 BES1824109b18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B189 5-PRIME, mRNA sequence
Length = 739
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 428 ccccacccgaagtccgcgtcgtggatgggcaggcgcacccagct 471
||||| |||||||| |||||||||||||||| || || ||||||
Sbjct: 444 ccccagccgaagtcggcgtcgtggatgggcatgcccagccagct 401
>gb|BF257469.3|BF257469 HVSMEf0013A01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013A01f, mRNA sequence
Length = 519
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 409 gcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatgggcag 459
|||||||||| | ||||||||||| |||||||| ||| ||| ||| |||||
Sbjct: 253 gcccatgaacgccggccgcccccagccgaagtcggcgccgtagatcggcag 203
>gb|BU999833.1|BU999833 HI15P16r HI Hordeum vulgare subsp. vulgare cDNA clone HI15P16
5-PRIME, mRNA sequence
Length = 547
Score = 46.1 bits (23), Expect = 0.003
Identities = 60/71 (84%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 1197 cgggaaggaggagatgtcgtccgtgaagtcgacggtggggatgaggcgctcgagatcacc 1256
|||| ||||||||||| | | ||||||||||| | |||||||||||||| ||| || |
Sbjct: 547 cgggtaggaggagatgcccccggtgaagtcgaccgcggggatgaggcgcttgaggtc-ca 489
Query: 1257 tggtgggcgcg 1267
|||||||||||
Sbjct: 488 tggtgggcgcg 478
>gb|BF630427.2|BF630427 HVSMEb0009F10f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0009F10f, mRNA sequence
Length = 725
Score = 44.1 bits (22), Expect = 0.012
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1066 cgccgcggcagaggtccgcccacgagttgatgaagtgc 1103
||||||||||||| |||||||| ||| | |||||||||
Sbjct: 77 cgccgcggcagagctccgcccaggagctcatgaagtgc 40
>gb|BG300498.2|BG300498 HVSMEb0017E07f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0017E07f, mRNA sequence
Length = 914
Score = 44.1 bits (22), Expect = 0.012
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1066 cgccgcggcagaggtccgcccacgagttgatgaagtgc 1103
||||||||||||| |||||||| ||| | |||||||||
Sbjct: 276 cgccgcggcagagctccgcccaggagctcatgaagtgc 239
>gb|CA025940.1|CA025940 HZ53J12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53J12
5-PRIME, mRNA sequence
Length = 381
Score = 44.1 bits (22), Expect = 0.012
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1066 cgccgcggcagaggtccgcccacgagttgatgaagtgc 1103
||||||||||||| |||||||| ||| | |||||||||
Sbjct: 221 cgccgcggcagagctccgcccaggagctcatgaagtgc 184
>gb|CA026040.1|CA026040 HZ53O17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53O17
5-PRIME, mRNA sequence
Length = 545
Score = 44.1 bits (22), Expect = 0.012
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1066 cgccgcggcagaggtccgcccacgagttgatgaagtgc 1103
||||||||||||| |||||||| ||| | |||||||||
Sbjct: 221 cgccgcggcagagctccgcccaggagctcatgaagtgc 184
>gb|BQ765422.1|BQ765422 EBro03_SQ007_J04_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_J04 5', mRNA sequence
Length = 519
Score = 42.1 bits (21), Expect = 0.049
Identities = 43/49 (87%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 1219 gtgaagtcgacggtggggatgaggcgctcgagatcacctggtgggcgcg 1267
||||||||||| | |||||||||||||| ||| || | |||||||||||
Sbjct: 511 gtgaagtcgaccgcggggatgaggcgcttgaggtc-catggtgggcgcg 464
>gb|CA016105.1|CA016105 HV10H24u HV Hordeum vulgare subsp. vulgare cDNA clone HV10H24
3-PRIME, mRNA sequence
Length = 452
Score = 42.1 bits (21), Expect = 0.049
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 409 gcccatgaacacgggccgcccccacccgaagtc 441
|||||||||| | ||||||||||| ||||||||
Sbjct: 321 gcccatgaacgccggccgcccccagccgaagtc 353
>gb|BI959432.1|BI959432 HVSMEn0019K11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019K11f, mRNA sequence
Length = 677
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 634 caccgtgccggcgttggcca 653
||||||||||||||||||||
Sbjct: 509 caccgtgccggcgttggcca 490
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 175,937
Number of Sequences: 312970
Number of extensions: 175937
Number of successful extensions: 53572
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53443
Number of HSP's gapped (non-prelim): 111
length of query: 1395
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1376
effective length of database: 169,188,109
effective search space: 232802837984
effective search space used: 232802837984
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)