BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455940.2.1
(1115 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF259495.2|BF259495 HVSMEf0019H19f Hordeum vulgare seedl... 787 0.0
gb|BQ762267.1|BQ762267 EBro01_SQ005_F11_R root, 3 week, hyd... 696 0.0
gb|BI950057.1|BI950057 HVSMEl0018B24f Hordeum vulgare spike... 688 0.0
gb|BI960118.1|BI960118 HVSMEn0023E18f Hordeum vulgare rachi... 688 0.0
gb|BF630555.2|BF630555 HVSMEb0011I21f Hordeum vulgare seedl... 660 0.0
gb|BM371957.2|BM371957 EBma08_SQ004_I06_R maternal, 28 DPA,... 644 0.0
gb|BU998750.1|BU998750 HI12A22r HI Hordeum vulgare subsp. v... 644 0.0
gb|BI960535.1|BI960535 HVSMEn0024P05f Hordeum vulgare rachi... 638 0.0
gb|BI957644.1|BI957644 HVSMEn0010H17f Hordeum vulgare rachi... 626 e-178
gb|BJ549094.1|BJ549094 BJ549094 K. Sato unpublished cDNA li... 620 e-176
gb|BU998774.1|BU998774 HI12C04r HI Hordeum vulgare subsp. v... 611 e-173
gb|BI958809.1|BI958809 HVSMEn0016L12f Hordeum vulgare rachi... 589 e-167
gb|BI960531.1|BI960531 HVSMEn0024O24f Hordeum vulgare rachi... 581 e-164
gb|BF623901.2|BF623901 HVSMEa0007J15f Hordeum vulgare seedl... 539 e-152
gb|BI954074.1|BI954074 HVSMEm0016B12f Hordeum vulgare green... 529 e-149
gb|CA030887.1|CA030887 HX08G19r HX Hordeum vulgare subsp. v... 492 e-137
gb|BU994274.1|BU994274 HM06H04r HM Hordeum vulgare subsp. v... 490 e-137
gb|BI960325.1|BI960325 HVSMEn0024D19f Hordeum vulgare rachi... 478 e-133
gb|BU979082.1|BU979082 HA15B18r HA Hordeum vulgare subsp. v... 478 e-133
gb|BU979265.1|BU979265 HA15J22r HA Hordeum vulgare subsp. v... 478 e-133
gb|CB859935.1|CB859935 HI12A22w HI Hordeum vulgare subsp. v... 478 e-133
gb|CB859954.1|CB859954 HI12C04w HI Hordeum vulgare subsp. v... 476 e-133
gb|BQ754341.1|BQ754341 EBca01_SQ003_K07_R carpel, pre-anthe... 426 e-118
gb|BQ763567.1|BQ763567 EBro02_SQ008_E22_R root, 3 week, hyd... 391 e-107
gb|CA001451.1|CA001451 HS17P10u HS Hordeum vulgare subsp. v... 391 e-107
gb|CB880406.1|CB880406 HM06H04w HM Hordeum vulgare subsp. v... 391 e-107
gb|BM097007.2|BM097007 EBpi07_SQ002_B16_R pistil, 12 DPA, n... 383 e-105
gb|BJ549697.1|BJ549697 BJ549697 K. Sato unpublished cDNA li... 367 e-100
gb|BI956599.1|BI956599 HVSMEn0004F14f Hordeum vulgare rachi... 317 4e-085
gb|CA028078.1|CA028078 HZ60O17r HZ Hordeum vulgare subsp. v... 315 2e-084
gb|CA024014.1|CA024014 HZ48B24r HZ Hordeum vulgare subsp. v... 305 2e-081
gb|BI780660.2|BI780660 EBes01_SQ001_K19_R embryo sac, 4-6 D... 301 3e-080
gb|BE602379.3|BE602379 HVSMEh0098L05f Hordeum vulgare 5-45 ... 285 2e-075
gb|BF065210.2|BF065210 HV_CEb0024C21f Hordeum vulgare seedl... 230 8e-059
gb|BQ753902.1|BQ753902 EBca01_SQ002_D12_R carpel, pre-anthe... 198 3e-049
gb|BJ545234.1|BJ545234 BJ545234 K. Sato unpublished cDNA li... 190 7e-047
gb|BJ546714.1|BJ546714 BJ546714 K. Sato unpublished cDNA li... 190 7e-047
gb|BM928851.1|BM928851 LP20008 Lemma/palea-enriched cDNA li... 170 6e-041
gb|BF627066.2|BF627066 HVSMEb0002G16f Hordeum vulgare seedl... 141 6e-032
gb|BF256079.2|BF256079 HVSMEf0008K20f Hordeum vulgare seedl... 141 6e-032
gb|BF261040.2|BF261040 HVSMEf0023J16f Hordeum vulgare seedl... 141 6e-032
gb|BJ466490.1|BJ466490 BJ466490 K. Sato unpublished cDNA li... 141 6e-032
gb|BQ468365.1|BQ468365 HM01A23T HM Hordeum vulgare subsp. v... 141 6e-032
gb|CD663691.1|CD663691 UCRHV18_06bd02_b1 Drought-stressed D... 137 9e-031
gb|BU977317.1|BU977317 HA11D12r HA Hordeum vulgare subsp. v... 133 1e-029
gb|CA025276.1|CA025276 HZ51K20r HZ Hordeum vulgare subsp. v... 133 1e-029
gb|BQ756877.1|BQ756877 EBem09_SQ005_A16_R embryo, 1 Day ger... 129 2e-028
gb|BF260414.3|BF260414 HVSMEf0021O22f Hordeum vulgare seedl... 127 8e-028
gb|BG415448.2|BG415448 HVSMEk0006I14f Hordeum vulgare testa... 117 8e-025
gb|CA017209.1|CA017209 HV14G11u HV Hordeum vulgare subsp. v... 117 8e-025
gb|BQ660910.1|BQ660910 HM01A23w HM Hordeum vulgare subsp. v... 115 3e-024
gb|BJ463542.1|BJ463542 BJ463542 K. Sato unpublished cDNA li... 111 5e-023
gb|CA020122.1|CA020122 HV14G11r HV Hordeum vulgare subsp. v... 111 5e-023
gb|AL504534.1|AL504534 AL504534 Hordeum vulgare Barke roots... 105 3e-021
gb|AL503249.1|AL503249 AL503249 Hordeum vulgare Barke roots... 103 1e-020
gb|AL504625.1|AL504625 AL504625 Hordeum vulgare Barke roots... 103 1e-020
gb|AL505702.1|AL505702 AL505702 Hordeum vulgare Barke roots... 103 1e-020
gb|BF624013.2|BF624013 HVSMEa0008J18f Hordeum vulgare seedl... 103 1e-020
gb|BF624054.2|BF624054 HVSMEa0009A08f Hordeum vulgare seedl... 103 1e-020
gb|BF625981.2|BF625981 HVSMEa0015B13f Hordeum vulgare seedl... 103 1e-020
gb|BF626523.2|BF626523 HVSMEa0018K06f Hordeum vulgare seedl... 103 1e-020
gb|BG299397.1|BG299397 HVSMEa0019M12f Hordeum vulgare seedl... 103 1e-020
gb|BF630744.2|BF630744 HVSMEb0013N02f Hordeum vulgare seedl... 103 1e-020
gb|BI956791.1|BI956791 HVSMEn0005F21f Hordeum vulgare rachi... 103 1e-020
gb|BI957447.1|BI957447 HVSMEn0009J18f Hordeum vulgare rachi... 103 1e-020
gb|BI957460.1|BI957460 HVSMEn0009L10f Hordeum vulgare rachi... 103 1e-020
gb|BI957746.1|BI957746 HVSMEn0010P24f Hordeum vulgare rachi... 103 1e-020
gb|BI957989.1|BI957989 HVSMEn0012L03f Hordeum vulgare rachi... 103 1e-020
gb|BE215236.1|BE215236 HV_CEb0006D22f Hordeum vulgare seedl... 103 1e-020
gb|BE215821.1|BE215821 HV_CEb0008J07f Hordeum vulgare seedl... 103 1e-020
gb|BE519617.1|BE519617 HV_CEb0016H01f Hordeum vulgare seedl... 103 1e-020
gb|BE519891.1|BE519891 HV_CEb0021J17f Hordeum vulgare seedl... 103 1e-020
gb|BE559087.1|BE559087 HV_CEb0022L14f Hordeum vulgare seedl... 103 1e-020
gb|BF065160.1|BF065160 HV_CEb0023K10f Hordeum vulgare seedl... 103 1e-020
gb|BE214450.2|BE214450 HV_CEb0003H21f Hordeum vulgare seedl... 103 1e-020
gb|BE216025.2|BE216025 HV_CEb0009C13f Hordeum vulgare seedl... 103 1e-020
gb|BE216491.2|BE216491 HV_CEb0010K05f Hordeum vulgare seedl... 103 1e-020
gb|BI959367.1|BI959367 HVSMEn0019G08f Hordeum vulgare rachi... 103 1e-020
gb|BI959561.1|BI959561 HVSMEn0020D05f Hordeum vulgare rachi... 103 1e-020
gb|BI959659.1|BI959659 HVSMEn0020K11f Hordeum vulgare rachi... 103 1e-020
gb|BI960119.1|BI960119 HVSMEn0023E19f Hordeum vulgare rachi... 103 1e-020
gb|BI960120.1|BI960120 HVSMEn0023E20f Hordeum vulgare rachi... 103 1e-020
gb|BI960166.1|BI960166 HVSMEn0023I06f Hordeum vulgare rachi... 103 1e-020
gb|BE215905.3|BE215905 HV_CEb0008M22f Hordeum vulgare seedl... 103 1e-020
gb|BF064997.3|BF064997 HV_CEb0022G03f Hordeum vulgare seedl... 103 1e-020
gb|BQ460884.1|BQ460884 HE01O17r HE Hordeum vulgare subsp. v... 103 1e-020
gb|BQ467961.1|BQ467961 HR01H17r HR Hordeum vulgare subsp. v... 103 1e-020
gb|BQ468035.1|BQ468035 HR01L16r HR Hordeum vulgare subsp. v... 103 1e-020
gb|BQ468043.1|BQ468043 HR01M03r HR Hordeum vulgare subsp. v... 103 1e-020
gb|BQ471953.1|BQ471953 HV03P16r HV Hordeum vulgare subsp. v... 103 1e-020
gb|BM370604.2|BM370604 EBro08_SQ004_L13_R root, 3 week, dro... 103 1e-020
gb|BQ765794.1|BQ765794 EBro03_SQ008_N04_R root, 3 week, wat... 103 1e-020
gb|BU977235.1|BU977235 HA11B05r HA Hordeum vulgare subsp. v... 103 1e-020
gb|CA006913.1|CA006913 HU06B07r HU Hordeum vulgare subsp. v... 103 1e-020
gb|CA017659.1|CA017659 HV05N12r HV Hordeum vulgare subsp. v... 103 1e-020
gb|CA018264.1|CA018264 HV08B21r HV Hordeum vulgare subsp. v... 103 1e-020
gb|CA018785.1|CA018785 HV09K09r HV Hordeum vulgare subsp. v... 103 1e-020
gb|CA019093.1|CA019093 HV10M04r HV Hordeum vulgare subsp. v... 103 1e-020
gb|CA020338.1|CA020338 HZ36A04r HZ Hordeum vulgare subsp. v... 103 1e-020
gb|CA021273.1|CA021273 HZ39J21r HZ Hordeum vulgare subsp. v... 103 1e-020
gb|CA022538.1|CA022538 HZ43I18r HZ Hordeum vulgare subsp. v... 103 1e-020
gb|CA023184.1|CA023184 HZ45H18r HZ Hordeum vulgare subsp. v... 103 1e-020
gb|BI956370.1|BI956370 HVSMEn0002O21f Hordeum vulgare rachi... 101 5e-020
gb|BJ464618.1|BJ464618 BJ464618 K. Sato unpublished cDNA li... 100 2e-019
gb|BG300054.1|BG300054 HVSMEb0011D09f Hordeum vulgare seedl... 96 3e-018
gb|BF259949.2|BF259949 HVSMEf0020L06f Hordeum vulgare seedl... 96 3e-018
gb|BI952091.1|BI952091 HVSMEm0004J09f Hordeum vulgare green... 96 3e-018
gb|BI957710.1|BI957710 HVSMEn0010N01f Hordeum vulgare rachi... 96 3e-018
gb|BF065240.1|BF065240 HV_CEb0024I11f Hordeum vulgare seedl... 96 3e-018
gb|BF264389.2|BF264389 HV_CEa0009E18f Hordeum vulgare seedl... 96 3e-018
gb|BI958752.1|BI958752 HVSMEn0016H12f Hordeum vulgare rachi... 96 3e-018
gb|BI959395.1|BI959395 HVSMEn0019I06f Hordeum vulgare rachi... 96 3e-018
gb|BI960399.1|BI960399 HVSMEn0024H14f Hordeum vulgare rachi... 96 3e-018
gb|AW982228.3|AW982228 HVSMEg0002G09f Hordeum vulgare pre-a... 96 3e-018
gb|BM444060.1|BM444060 EBem09_SQ004_A16_R embryo, 1 Day ger... 96 3e-018
gb|BM443904.2|BM443904 EBem09_SQ001_P18_R embryo, 1 Day ger... 96 3e-018
gb|BM100502.2|BM100502 EBma01_SQ005_G14_R maternal, 4 DPA, ... 96 3e-018
gb|BI779395.2|BI779395 EBro01_SQ003_O04_R root, 3 week, hyd... 96 3e-018
gb|CB878369.1|CB878369 HP08E22T HP Hordeum vulgare subsp. v... 96 3e-018
gb|BI957501.1|BI957501 HVSMEn0009O03f Hordeum vulgare rachi... 90 2e-016
gb|BF619963.2|BF619963 HVSMEc0009N12f Hordeum vulgare seedl... 88 7e-016
gb|BI954845.1|BI954845 HVSMEm0020A17f Hordeum vulgare green... 88 7e-016
gb|BI956671.1|BI956671 HVSMEn0004L02f Hordeum vulgare rachi... 88 7e-016
gb|BI959235.1|BI959235 HVSMEn0018M17f Hordeum vulgare rachi... 88 7e-016
gb|BU977318.1|BU977318 HA11D12u HA Hordeum vulgare subsp. v... 88 7e-016
gb|CA007423.1|CA007423 HU07O17r HU Hordeum vulgare subsp. v... 88 7e-016
gb|BI956521.1|BI956521 HVSMEn0003O13f Hordeum vulgare rachi... 86 3e-015
gb|BJ467041.1|BJ467041 BJ467041 K. Sato unpublished cDNA li... 86 3e-015
gb|BF065682.1|BF065682 HV_CEb0013G02f Hordeum vulgare seedl... 82 4e-014
gb|AV929789.1|AV929789 AV929789 K. Sato unpublished cDNA li... 82 4e-014
gb|BI955535.1|BI955535 HVSMEm0023H22f Hordeum vulgare green... 80 2e-013
gb|CA025050.1|CA025050 HZ51B06r HZ Hordeum vulgare subsp. v... 80 2e-013
gb|AL450922.1|AL450922 AL450922 Hordeum vulgare Barke etiol... 78 7e-013
gb|BF254803.3|BF254803 HVSMEf0005B13f Hordeum vulgare seedl... 78 7e-013
gb|AV924692.1|AV924692 AV924692 K. Sato unpublished cDNA li... 78 7e-013
gb|BQ661501.1|BQ661501 HM03L08u HM Hordeum vulgare subsp. v... 78 7e-013
gb|BQ469203.1|BQ469203 HM03L08r HM Hordeum vulgare subsp. v... 76 3e-012
gb|AL500139.1|AL500139 AL500139 Hordeum vulgare Barke etiol... 74 1e-011
gb|AL500625.1|AL500625 AL500625 Hordeum vulgare Barke roots... 74 1e-011
gb|AL500661.1|AL500661 AL500661 Hordeum vulgare Barke roots... 74 1e-011
gb|AL501924.1|AL501924 AL501924 Hordeum vulgare Barke roots... 74 1e-011
gb|AL503230.1|AL503230 AL503230 Hordeum vulgare Barke roots... 74 1e-011
gb|BF257218.2|BF257218 HVSMEf0012D15f Hordeum vulgare seedl... 74 1e-011
gb|BE558675.1|BE558675 HV_CEb0020A16f Hordeum vulgare seedl... 74 1e-011
gb|BI958431.1|BI958431 HVSMEn0014O22f Hordeum vulgare rachi... 74 1e-011
gb|BI958437.1|BI958437 HVSMEn0014P16f Hordeum vulgare rachi... 74 1e-011
gb|BI960058.1|BI960058 HVSMEn0023A12f Hordeum vulgare rachi... 74 1e-011
gb|BF254858.3|BF254858 HVSMEf0005D24f Hordeum vulgare seedl... 74 1e-011
gb|AJ431813.1|AJ431813 AJ431813 S00002 Hordeum vulgare subs... 74 1e-011
gb|BJ464739.1|BJ464739 BJ464739 K. Sato unpublished cDNA li... 74 1e-011
gb|BJ468176.1|BJ468176 BJ468176 K. Sato unpublished cDNA li... 74 1e-011
gb|BQ661977.1|BQ661977 HR01B07u HR Hordeum vulgare subsp. v... 74 1e-011
gb|BQ662110.1|BQ662110 HR01J19u HR Hordeum vulgare subsp. v... 74 1e-011
gb|BQ662142.1|BQ662142 HR01L16u HR Hordeum vulgare subsp. v... 74 1e-011
gb|CA016710.1|CA016710 HV06L01u HV Hordeum vulgare subsp. v... 74 1e-011
gb|CA016746.1|CA016746 HV06J09u HV Hordeum vulgare subsp. v... 74 1e-011
gb|CA016838.1|CA016838 HV05N12u HV Hordeum vulgare subsp. v... 74 1e-011
gb|CA017111.1|CA017111 HV14N14u HV Hordeum vulgare subsp. v... 74 1e-011
gb|CB878414.1|CB878414 HP08H09T HP Hordeum vulgare subsp. v... 74 1e-011
gb|CD663835.1|CD663835 UCRHV18_06dc01_b1 Drought-stressed D... 74 1e-011
gb|CA016634.1|CA016634 HV08B21u HV Hordeum vulgare subsp. v... 72 4e-011
gb|CA004555.1|CA004555 HS17P10r HS Hordeum vulgare subsp. v... 70 2e-010
gb|AL502956.1|AL502956 AL502956 Hordeum vulgare Barke roots... 68 7e-010
gb|CB880402.1|CB880402 HM06G24w HM Hordeum vulgare subsp. v... 68 7e-010
gb|BI960085.1|BI960085 HVSMEn0023C11f Hordeum vulgare rachi... 66 3e-009
gb|BU994270.1|BU994270 HM06G24r HM Hordeum vulgare subsp. v... 66 3e-009
gb|AL501387.1|AL501387 AL501387 Hordeum vulgare Barke roots... 62 4e-008
gb|AL509899.1|AL509899 AL509899 Hordeum vulgare Barke devel... 62 4e-008
gb|BM444199.1|BM444199 EBem09_SQ004_H06_R embryo, 1 Day ger... 62 4e-008
gb|BM443881.2|BM443881 EBem09_SQ001_N18_R embryo, 1 Day ger... 62 4e-008
gb|BQ768082.1|BQ768082 EBro08_SQ010_K18_R root, 3 week, dro... 62 4e-008
gb|BI953073.1|BI953073 HVSMEm0009M16f Hordeum vulgare green... 60 2e-007
gb|BI780485.2|BI780485 EBem08_SQ001_G14_R embryo, 40 DPA, n... 58 7e-007
gb|CA017891.1|CA017891 HV06L01r HV Hordeum vulgare subsp. v... 58 7e-007
gb|CA020280.1|CA020280 HV14N14r HV Hordeum vulgare subsp. v... 58 7e-007
gb|CA020824.1|CA020824 HZ37P01r HZ Hordeum vulgare subsp. v... 58 7e-007
gb|CA029054.1|CA029054 HZ64B04r HZ Hordeum vulgare subsp. v... 58 7e-007
gb|BI957613.1|BI957613 HVSMEn0010F23f Hordeum vulgare rachi... 56 3e-006
gb|BI953755.1|BI953755 HVSMEm0014D01f Hordeum vulgare green... 52 4e-005
gb|BI779178.2|BI779178 EBro01_SQ003_D18_R root, 3 week, hyd... 52 4e-005
gb|BF266762.2|BF266762 HV_CEa0015P21f Hordeum vulgare seedl... 50 2e-004
gb|BG310291.2|BG310291 HVSMEc0017G05f Hordeum vulgare seedl... 50 2e-004
gb|BF260683.3|BF260683 HVSMEf0022K16f Hordeum vulgare seedl... 50 2e-004
gb|BE213939.2|BE213939 HV_CEb0001L07f Hordeum vulgare seedl... 50 2e-004
gb|BQ662084.1|BQ662084 HR01H17u HR Hordeum vulgare subsp. v... 50 2e-004
gb|BQ756029.1|BQ756029 EBem05_SQ001_F05_R embryo, 14 DPA, n... 50 2e-004
gb|CA002969.1|CA002969 HS09A14r HS Hordeum vulgare subsp. v... 50 2e-004
gb|BF256995.2|BF256995 HVSMEf0011J05f Hordeum vulgare seedl... 48 6e-004
gb|BI959396.1|BI959396 HVSMEn0019I08f Hordeum vulgare rachi... 48 6e-004
gb|BG370011.2|BG370011 HVSMEi0026P07f Hordeum vulgare 20 DA... 48 6e-004
gb|AL503273.1|AL503273 AL503273 Hordeum vulgare Barke roots... 42 0.039
gb|BI956207.1|BI956207 HVSMEn0001C02f Hordeum vulgare rachi... 42 0.039
gb|BI958598.1|BI958598 HVSMEn0015N07f Hordeum vulgare rachi... 42 0.039
gb|BI960633.1|BI960633 HVSMEn0025H07f Hordeum vulgare rachi... 42 0.039
gb|BF256310.3|BF256310 HVSMEf0009N11f Hordeum vulgare seedl... 42 0.039
gb|BJ464651.1|BJ464651 BJ464651 K. Sato unpublished cDNA li... 42 0.039
gb|BM443303.2|BM443303 EBro02_SQ003_H23_R root, 3 week, hyd... 42 0.039
gb|BM370212.2|BM370212 EBro08_SQ003_F12_R root, 3 week, dro... 42 0.039
gb|AL502164.1|AL502164 AL502164 Hordeum vulgare Barke roots... 40 0.15
gb|AL504882.1|AL504882 AL504882 Hordeum vulgare Barke roots... 40 0.15
gb|BG417514.1|BG417514 HVSMEk0017N23f Hordeum vulgare testa... 40 0.15
gb|BQ472807.1|BQ472807 HB01H03r BC Hordeum vulgare subsp. v... 40 0.15
gb|BM098646.2|BM098646 EBem08_SQ003_K19_R embryo, 40 DPA, n... 40 0.15
gb|BI779980.2|BI779980 EBma08_SQ001_A19_R maternal, 28 DPA,... 40 0.15
gb|BM096893.2|BM096893 EBma08_SQ001_O24_R maternal, 28 DPA,... 40 0.15
gb|BQ767444.1|BQ767444 EBro08_SQ008_M22_R root, 3 week, dro... 40 0.15
gb|BU986340.1|BU986340 HF11H15r HF Hordeum vulgare subsp. v... 40 0.15
gb|BU988842.1|BU988842 HF18O04r HF Hordeum vulgare subsp. v... 40 0.15
gb|BU989334.1|BU989334 HF21H09r HF Hordeum vulgare subsp. v... 40 0.15
gb|BU989638.1|BU989638 HF22E16r HF Hordeum vulgare subsp. v... 40 0.15
gb|BU990578.1|BU990578 HF25H10r HF Hordeum vulgare subsp. v... 40 0.15
gb|CA001302.1|CA001302 HS18G04u HS Hordeum vulgare subsp. v... 40 0.15
gb|CA001441.1|CA001441 HS17O18u HS Hordeum vulgare subsp. v... 40 0.15
gb|CB876401.1|CB876401 HX11C16w HX Hordeum vulgare subsp. v... 40 0.15
gb|CV055589.1|CV055589 BNEL121c8 Barley EST endosperm libra... 40 0.15
gb|CK125845.1|CK125845 BES1824111A1c09 BES1824 Hordeum vulg... 40 0.15
gb|AY082958.1| Hordeum vulgare CONSTANS-like protein CO5 (C... 40 0.15
gb|AY082959.1| Hordeum vulgare clone HVSMEb0009K09 CONSTANS... 40 0.15
emb|AJ249146.1|HVU249146 Hordeum vulgare mRNA for MADS-box ... 40 0.15
>gb|BF259495.2|BF259495 HVSMEf0019H19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019H19f, mRNA sequence
Length = 759
Score = 787 bits (397), Expect = 0.0
Identities = 554/607 (91%)
Strand = Plus / Minus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 607 ttcacttggcgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcna 548
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgga 369
|||| | |||||||||||| |||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 547 cgcgctggtcggcggcgagggccttgttgaggtcgagnacgaagtcgcggtagtagcgga 488
Query: 370 tgtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgt 429
|||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||
Sbjct: 487 tgtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagggtgttgt 428
Query: 430 cgtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggt 489
||||||||| ||||||||| | ||| || ||||||| || |||||||||||||||||||
Sbjct: 427 cgtagccgaggaggccgccgaccttgacgagcttcatgaggcgctcgtggtagttgaggt 368
Query: 490 agttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccg 549
||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||
Sbjct: 367 agttgtccttgtcggcgtccacgaagacgaagtcgaaggtgccgtggttggcctcgtcct 308
Query: 550 cgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcga 609
||| |||| |||| |||||||||||||| || ||||||||||||||||||||||| || |
Sbjct: 307 cgaggagggcgtccaggacggggagcgccgggccctcgcggaagtcgatcttgtgcgcca 248
Query: 610 cgccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatgg 669
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 247 cgccggccttctcgatgcacggcagccccagctcgtagttctcgcggttgatgtccatgg 188
Query: 670 ccaagatcgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtgt 729
||||||| |||||||| || |||| ||||||||| |||||||| ||||||||||| ||||
Sbjct: 187 ccaagatggtgccgtcgtcggggatggcgagcgcggtggcgagcagggagtagcccgtgt 128
Query: 730 agacgccgatctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaact 789
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 127 agacgccgatctccatggtcttcttggcgccgatgagcttgagcagcatgttgaggaact 68
Query: 790 gcccctcgtcggcggaggtcgtcatcaggttccatgggtgcttggcggtgatctcgcgga 849
| |||||||| || || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 67 ggccctcgtccgccgacgtcgtcatcaggttccatgggtggttggcggtgatctcgcgga 8
Query: 850 gctcctt 856
|||||||
Sbjct: 7 gctcctt 1
>gb|BQ762267.1|BQ762267 EBro01_SQ005_F11_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_F11 5', mRNA sequence
Length = 664
Score = 696 bits (351), Expect = 0.0
Identities = 502/551 (91%), Gaps = 1/551 (0%)
Strand = Plus / Minus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgcc-gacggggagctggcagatctcg 308
|||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 553 ttcacttggcgcggcggcagagggtgatgccgtcgcccgacggggagctggcagatctcg 494
Query: 309 acgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgg 368
||||| | |||||||||||| |||||||||||| |||| ||||||||||||||| |||||
Sbjct: 493 acgcgctggtcggcggcgagggccttgttgaggtcgaggacgaagtcgcggtagtagcgg 434
Query: 369 atgtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttg 428
||||||||||||||||| |||||| ||||||||||||||||||||||||| || ||||||
Sbjct: 433 atgtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagggtgttg 374
Query: 429 tcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgagg 488
|||||||||| ||||||||| | ||| || ||||||| || ||||||||||||||||||
Sbjct: 373 tcgtagccgaggaggccgccgaccttgacgagcttcatgaggcgctcgtggtagttgagg 314
Query: 489 tagttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctcc 548
|||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||
Sbjct: 313 tagttgtccttgtcggcgtccacgaagacgaagtcgaaggtgccgtggttggcctcgtcc 254
Query: 549 gcgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcg 608
||| |||| |||| |||||||||||||| || ||||||||||||||||||||||| ||
Sbjct: 253 tcgaggagggcgtccaggacggggagcgccgggccctcgcggaagtcgatcttgtgcgcc 194
Query: 609 acgccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatg 668
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 193 acgccggccttctcgatgcacggcagccccagctcgtagttctcgcggttgatgtccatg 134
Query: 669 gccaagatcgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtg 728
|||||||| |||||||| || |||| ||||||||| |||||||| ||||||||||| |||
Sbjct: 133 gccaagatggtgccgtcgtcggggatggcgagcgcggtggcgagcagggagtagcccgtg 74
Query: 729 tagacgccgatctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaac 788
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 73 tagacgccgatctccatggtcttcttggcgccgatgagcttgagcagcatgttgaggaac 14
Query: 789 tgcccctcgtc 799
|| ||||||||
Sbjct: 13 tggccctcgtc 3
>gb|BI950057.1|BI950057 HVSMEl0018B24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0018B24f, mRNA sequence
Length = 880
Score = 688 bits (347), Expect = 0.0
Identities = 534/597 (89%), Gaps = 1/597 (0%)
Strand = Plus / Minus
Query: 376 tgcgcatgggcgcgtcgtcggggagcacgacgg-agccgttccacagcgtgttgtcgtag 434
||||||| || |||||| ||||||||| ||| | |||||||| || ||||||||||||
Sbjct: 865 tgcgcattggggcgtcgcgggggagcacnacgnnanccgttccanagggtgttgtcgtag 806
Query: 435 ccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggtagttg 494
|||| ||||||||| | ||| || ||||||| || |||||||||||||| |||||||||
Sbjct: 805 ccgaggaggccgccgaccttgacgagcttcatnaggcgctcgtggtagttnaggtagttg 746
Query: 495 tccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccgcgatg 554
|||||||||||||||||||||||||||||||| | |||||||| ||| ||| ||| |
Sbjct: 745 tccttgtcggcgtccacgaagacgaagtcgaaggtgccgtggttggcctcgtcctcgagg 686
Query: 555 aggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcgacgccg 614
||| |||| |||||||||||||| || ||||||||||||||||||||||| || ||||||
Sbjct: 685 agggcgtccaggacggggagcgccgggccctcgcggaagtcgatcttgtgcgccacgccg 626
Query: 615 gccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatggccaag 674
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gccttctcgatgcacggcagccccagctcgtagttctcgcggttgatgtccatggccaag 566
Query: 675 atcgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtgtagacg 734
|| |||||||| || |||| ||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 565 atggtgccgtcgtcggggatggcgagcgcggtggcgagcagggagtagcccgtgtagacg 506
Query: 735 ccgatctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaactgcccc 794
||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct: 505 ccgatctccatggtcttcttggcgccgatgagcttgagcagcatgttgaggaactggccc 446
Query: 795 tcgtcggcggaggtcgtcatcaggttccatgggtgcttggcggtgatctcgcggagctcc 854
||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 tcgtccgccgacgtcgtcatcaggttccatgggtggttggcggtgatctcgcggagctcc 386
Query: 855 ttcatgctctccggctcccgcgggtacacgctcgtgtccaggatgtactggtagaggtcg 914
||||||| ||| |||| ||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 385 ttcatgcactcgtgctcgcgcgggtacacgctcgtctccaggatgtactggtagagggcg 326
Query: 915 tcgctcttgagcaggctcttgtggccgacctcggagtgccgcgtcttctgctcgccg 971
||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct: 325 tcgctctggagcaggctcttgtgtccgacctcggagtggcgcgtgacctgctcgccg 269
>gb|BI960118.1|BI960118 HVSMEn0023E18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023E18f, mRNA sequence
Length = 637
Score = 688 bits (347), Expect = 0.0
Identities = 485/531 (91%)
Strand = Plus / Minus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 545 ttcacttggcgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcga 486
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgga 369
|||| | |||||||||||| |||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 485 cgcgctggtcggcggcgagggccttgttgaggtcgaggacgaagtcgcggtagtagcgga 426
Query: 370 tgtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgt 429
|||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||
Sbjct: 425 tgtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagggtgttgt 366
Query: 430 cgtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggt 489
||||||||| ||||||||| | ||| || ||||||| || |||||||||||||||||||
Sbjct: 365 cgtagccgaggaggccgccgaccttgacgagcttcatgaggcgctcgtggtagttgaggt 306
Query: 490 agttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccg 549
||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||
Sbjct: 305 agttgtccttgtcggcgtccacgaagacgaagtcgaaggtgccgtggttggcctcgtcct 246
Query: 550 cgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcga 609
||| |||| |||| |||||||||||||| || ||||||||||||||||||||||| || |
Sbjct: 245 cgaggagggcgtccaggacggggagcgccgggccctcgcggaagtcgatcttgtgcgcca 186
Query: 610 cgccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatgg 669
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 185 cgccggccttctcgatgcacggcagccccagctcgtagttctcgcggttgatgtccatgg 126
Query: 670 ccaagatcgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtgt 729
||||||| |||||||| || |||| ||||||||| |||||||| ||||||||||| ||||
Sbjct: 125 ccaagatggtgccgtcgtcggggatggcgagcgcggtggcgagcagggagtagcccgtgt 66
Query: 730 agacgccgatctccatggtcttcttggcgccgatgagcttgatgagcatgt 780
|||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 65 agacgccgatctccatggtcttcttggcgccgatgagcttgagcagcatgt 15
>gb|BF630555.2|BF630555 HVSMEb0011I21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0011I21f, mRNA sequence
Length = 736
Score = 660 bits (333), Expect = 0.0
Identities = 514/573 (89%), Gaps = 1/573 (0%)
Strand = Plus / Minus
Query: 400 gcacgacggagccgttccacagcgtgttgtcgtagccgatgaggccgcccagcttcacca 459
||||||||||||||||| | || |||||||||||||||| |||||||| | ||| || |
Sbjct: 736 gcacgacggagccgttcaagagggtgttgtcgtagccgagaaggccgccgaccttgacga 677
Query: 460 gcttcagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacga 519
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gcttcatgaggcgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacga 617
Query: 520 agtcgaacgac-ccgtggttcttctcctccgcgatgaggtcgtcgaggacggggagcgcg 578
||||||| | ||||||| || ||| ||| |||| |||| ||||||||||||||
Sbjct: 616 agtcgaaaggtgccgtggtggccttcgtcctcgaggagggcgtccaggacggggagcgcc 557
Query: 579 ggaccctcgcggaagtcgatcttgtgggcgacgccggccttctcgatgcagggcaggccc 638
|| ||||||||||||||||||||||| || |||||||||||||||||||| ||||| |||
Sbjct: 556 gggccctcgcggaagtcgatcttgtgcgccacgccggccttctcgatgcacggcagcccc 497
Query: 639 agctcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcg 698
|||||||||||||||||||||||||||||||||||||| |||||||| || |||| ||||
Sbjct: 496 agctcgtagttctcgcggttgatgtccatggccaagatggtgccgtcgtcggggatggcg 437
Query: 699 agcgccgtggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcg 758
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 436 agcgcggtggcgagcagggagtagcccgtgtagacgccgatctccatggtcttcttggcg 377
Query: 759 ccgatgagcttgatgagcatgttcaggaactgcccctcgtcggcggaggtcgtcatcagg 818
||||||||||||| |||||||| |||||||| |||||||| || || ||||||||||||
Sbjct: 376 ccgatgagcttgagcagcatgttgaggaactggccctcgtccgccgacgtcgtcatcagg 317
Query: 819 ttccatgggtgcttggcggtgatctcgcggagctccttcatgctctccggctcccgcggg 878
||||||||||| ||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct: 316 ttccatgggtggttggcggtgatctcgcggagctccttcatgcactcgtgctcgcgcggg 257
Query: 879 tacacgctcgtgtccaggatgtactggtagaggtcgtcgctcttgagcaggctcttgtgg 938
||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 256 tacacgctcgtctccaggatgtactggtagagggcgtcgctctggagcaggctcttgtgt 197
Query: 939 ccgacctcggagtgccgcgtcttctgctcgccg 971
|||||||||||||| ||||| ||||||||||
Sbjct: 196 ccgacctcggagtggcgcgtgacctgctcgccg 164
>gb|BM371957.2|BM371957 EBma08_SQ004_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ004_I06 5', mRNA sequence
Length = 673
Score = 644 bits (325), Expect = 0.0
Identities = 457/501 (91%)
Strand = Plus / Minus
Query: 471 cgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacgac 530
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 666 cgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaaggtg 607
Query: 531 ccgtggttcttctcctccgcgatgaggtcgtcgaggacggggagcgcgggaccctcgcgg 590
|||||||| ||| ||| ||| |||| |||| |||||||||||||| || |||||||||
Sbjct: 606 ccgtggttggcctcgtcctcgaggagggcgtccaggacggggagcgccgggccctcgcgg 547
Query: 591 aagtcgatcttgtgggcgacgccggccttctcgatgcagggcaggcccagctcgtagttc 650
|||||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 546 aagtcgatcttgtgcgccacgccggccttctcgatgcacggcagccccagctcgtagttc 487
Query: 651 tcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgccgtggcg 710
|||||||||||||||||||||||||| |||||||| || |||| ||||||||| ||||||
Sbjct: 486 tcgcggttgatgtccatggccaagatggtgccgtcgtcggggatggcgagcgcggtggcg 427
Query: 711 aggagggagtagccggtgtagacgccgatctccatggtcttcttggcgccgatgagcttg 770
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agcagggagtagcccgtgtagacgccgatctccatggtcttcttggcgccgatgagcttg 367
Query: 771 atgagcatgttcaggaactgcccctcgtcggcggaggtcgtcatcaggttccatgggtgc 830
| |||||||| |||||||| |||||||| || || |||||||||||||||||||||||
Sbjct: 366 agcagcatgttgaggaactggccctcgtccgccgacgtcgtcatcaggttccatgggtgg 307
Query: 831 ttggcggtgatctcgcggagctccttcatgctctccggctcccgcgggtacacgctcgtg 890
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct: 306 ttggcggtgatctcgcggagctccttcatgcactcgtgctcgcgcgggtacacgctcgtc 247
Query: 891 tccaggatgtactggtagaggtcgtcgctcttgagcaggctcttgtggccgacctcggag 950
||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||
Sbjct: 246 tccaggatgtactggtagagggcgtcgctctggagcaggctcttgtgtccgacctcggag 187
Query: 951 tgccgcgtcttctgctcgccg 971
|| ||||| ||||||||||
Sbjct: 186 tggcgcgtgacctgctcgccg 166
>gb|BU998750.1|BU998750 HI12A22r HI Hordeum vulgare subsp. vulgare cDNA clone HI12A22
5-PRIME, mRNA sequence
Length = 670
Score = 644 bits (325), Expect = 0.0
Identities = 457/501 (91%)
Strand = Plus / Minus
Query: 471 cgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacgac 530
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 669 cgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaaggtg 610
Query: 531 ccgtggttcttctcctccgcgatgaggtcgtcgaggacggggagcgcgggaccctcgcgg 590
|||||||| ||| ||| ||| |||| |||| |||||||||||||| || |||||||||
Sbjct: 609 ccgtggttggcctcgtcctcgaggagggcgtccaggacggggagcgccgggccctcgcgg 550
Query: 591 aagtcgatcttgtgggcgacgccggccttctcgatgcagggcaggcccagctcgtagttc 650
|||||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 549 aagtcgatcttgtgcgccacgccggccttctcgatgcacggcagccccagctcgtagttc 490
Query: 651 tcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgccgtggcg 710
|||||||||||||||||||||||||| |||||||| || |||| ||||||||| ||||||
Sbjct: 489 tcgcggttgatgtccatggccaagatggtgccgtcgtcggggatggcgagcgcggtggcg 430
Query: 711 aggagggagtagccggtgtagacgccgatctccatggtcttcttggcgccgatgagcttg 770
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agcagggagtagcccgtgtagacgccgatctccatggtcttcttggcgccgatgagcttg 370
Query: 771 atgagcatgttcaggaactgcccctcgtcggcggaggtcgtcatcaggttccatgggtgc 830
| |||||||| |||||||| |||||||| || || |||||||||||||||||||||||
Sbjct: 369 agcagcatgttgaggaactggccctcgtccgccgacgtcgtcatcaggttccatgggtgg 310
Query: 831 ttggcggtgatctcgcggagctccttcatgctctccggctcccgcgggtacacgctcgtg 890
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct: 309 ttggcggtgatctcgcggagctccttcatgcactcgtgctcgcgcgggtacacgctcgtc 250
Query: 891 tccaggatgtactggtagaggtcgtcgctcttgagcaggctcttgtggccgacctcggag 950
||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||
Sbjct: 249 tccaggatgtactggtagagggcgtcgctctggagcaggctcttgtgtccgacctcggag 190
Query: 951 tgccgcgtcttctgctcgccg 971
|| ||||| ||||||||||
Sbjct: 189 tggcgcgtgacctgctcgccg 169
>gb|BI960535.1|BI960535 HVSMEn0024P05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024P05f, mRNA sequence
Length = 655
Score = 638 bits (322), Expect = 0.0
Identities = 456/501 (91%)
Strand = Plus / Minus
Query: 471 cgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacgac 530
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 654 cgctcgtggtagttgaggtagttgtccntgtcggcgtccacgaagacgaagtcgaaggtg 595
Query: 531 ccgtggttcttctcctccgcgatgaggtcgtcgaggacggggagcgcgggaccctcgcgg 590
|||||||| ||| ||| ||| |||| |||| |||||||||||||| || |||||||||
Sbjct: 594 ccgtggttggcctcgtcctcgaggagggcgtccaggacggggagcgccgggccctcgcgg 535
Query: 591 aagtcgatcttgtgggcgacgccggccttctcgatgcagggcaggcccagctcgtagttc 650
|||||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 534 aagtcgatcttgtgcgccacgccggccttctcgatgcacggcagccccagctcgtagttc 475
Query: 651 tcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgccgtggcg 710
|||||||||||||||||||||||||| |||||||| || |||| ||||||||| ||||||
Sbjct: 474 tcgcggttgatgtccatggccaagatggtgccgtcgtcggggatggcgagcgcggtggcg 415
Query: 711 aggagggagtagccggtgtagacgccgatctccatggtcttcttggcgccgatgagcttg 770
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agcagggagtagcccgtgtagacgccgatctccatggtcttcttggcgccgatgagcttg 355
Query: 771 atgagcatgttcaggaactgcccctcgtcggcggaggtcgtcatcaggttccatgggtgc 830
| |||||||| |||||||| |||||||| || || |||||||||||||||||||||||
Sbjct: 354 agcagcatgttgaggaactggccctcgtccgccgacgtcgtcatcaggttccatgggtgg 295
Query: 831 ttggcggtgatctcgcggagctccttcatgctctccggctcccgcgggtacacgctcgtg 890
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct: 294 ttggcggtgatctcgcggagctccttcatgcactcgtgctcgcgcgggtacacgctcgtc 235
Query: 891 tccaggatgtactggtagaggtcgtcgctcttgagcaggctcttgtggccgacctcggag 950
||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||
Sbjct: 234 tccaggatgtactggtagagggcgtcgctctggagcaggctcttgtgtccgacctcggag 175
Query: 951 tgccgcgtcttctgctcgccg 971
|| ||||| ||||||||||
Sbjct: 174 tggcgcgtgacctgctcgccg 154
>gb|BI957644.1|BI957644 HVSMEn0010H17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010H17f, mRNA sequence
Length = 652
Score = 626 bits (316), Expect = e-178
Identities = 448/492 (91%)
Strand = Plus / Minus
Query: 480 tagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttc 539
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 652 tagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaaggtgccgtggttg 593
Query: 540 ttctcctccgcgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatc 599
||| ||| ||| |||| |||| |||||||||||||| || ||||||||||||||||||
Sbjct: 592 gcctcgtcctcgaggagggcgtccaggacggggagcgccgggccctcgcggaagtcgatc 533
Query: 600 ttgtgggcgacgccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttg 659
||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 532 ttgtgcgccacgccggccttctcgatgcacggcagccccagctcgtagttctcgcggttg 473
Query: 660 atgtccatggccaagatcgtgccgtcctccgggagggcgagcgccgtggcgaggagggag 719
||||||||||||||||| |||||||| || |||| ||||||||| |||||||| ||||||
Sbjct: 472 atgtccatggccaagatggtgccgtcgtcggggatggcgagcgcggtggcgagcagggag 413
Query: 720 tagccggtgtagacgccgatctccatggtcttcttggcgccgatgagcttgatgagcatg 779
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 412 tagcccgtgtagacgccgatctccatggtcttcttggcgccgatgagcttgagcagcatg 353
Query: 780 ttcaggaactgcccctcgtcggcggaggtcgtcatcaggttccatgggtgcttggcggtg 839
|| |||||||| |||||||| || || ||||||||||||||||||||||| |||||||||
Sbjct: 352 ttgaggaactggccctcgtccgccgacgtcgtcatcaggttccatgggtggttggcggtg 293
Query: 840 atctcgcggagctccttcatgctctccggctcccgcgggtacacgctcgtgtccaggatg 899
|||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||||
Sbjct: 292 atctcgcggagctccttcatgcactcgtgctcgcgcgggtacacgctcgtctccaggatg 233
Query: 900 tactggtagaggtcgtcgctcttgagcaggctcttgtggccgacctcggagtgccgcgtc 959
|||||||||||| ||||||||| ||||||||||||||| |||||||||||||| |||||
Sbjct: 232 tactggtagagggcgtcgctctggagcaggctcttgtgtccgacctcggagtggcgcgtg 173
Query: 960 ttctgctcgccg 971
||||||||||
Sbjct: 172 acctgctcgccg 161
>gb|BJ549094.1|BJ549094 BJ549094 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28c08 5', mRNA sequence
Length = 509
Score = 620 bits (313), Expect = e-176
Identities = 460/509 (90%)
Strand = Plus / Minus
Query: 305 ctcgacgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaa 364
||||||||| | |||||||||||| |||||||||||| |||| ||||||||||||||| |
Sbjct: 509 ctcgacgcgctggtcggcggcgagggccttgttgaggtcgaggacgaagtcgcggtagta 450
Query: 365 gcggatgtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgt 424
||||||||||||||||||||| |||||| ||||||||||||||||||||||||| || ||
Sbjct: 449 gcggatgtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagggt 390
Query: 425 gttgtcgtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagtt 484
|||||||||||||| ||||||||| | ||| || ||||||| || ||||||||||||||
Sbjct: 389 gttgtcgtagccgaggaggccgccgaccttgacgagcttcatgaggcgctcgtggtagtt 330
Query: 485 gaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctc 544
|||||||||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct: 329 gaggtagttgtccttgtcggcgtccacgaagacgaagtcgaaggtgccgtggttggcctc 270
Query: 545 ctccgcgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtg 604
||| ||| |||| |||| |||||||||||||| || |||||||||||||||||||||||
Sbjct: 269 gtcctcgaggagggcgtccaggacggggagcgccgggccctcgcggaagtcgatcttgtg 210
Query: 605 ggcgacgccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtc 664
|| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 209 cgccacgccggccttctcgatgcacggcagccccagctcgtagttctcgcggttgatgtc 150
Query: 665 catggccaagatcgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagcc 724
|||||||||||| |||||||| || |||| ||||||||| |||||||| |||||||||||
Sbjct: 149 catggccaagatggtgccgtcgtcggggatggcgagcgcggtggcgagcagggagtagcc 90
Query: 725 ggtgtagacgccgatctccatggtcttcttggcgccgatgagcttgatgagcatgttcag 784
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 89 cgtgtagacgccgatctccatggtcttcttggcgccgatgagcttgagcagcatgttgag 30
Query: 785 gaactgcccctcgtcggcggaggtcgtca 813
|||||| |||||||| || || |||||||
Sbjct: 29 gaactggccctcgtccgccgacgtcgtca 1
>gb|BU998774.1|BU998774 HI12C04r HI Hordeum vulgare subsp. vulgare cDNA clone HI12C04
5-PRIME, mRNA sequence
Length = 649
Score = 611 bits (308), Expect = e-173
Identities = 440/484 (90%)
Strand = Plus / Minus
Query: 488 gtagttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctc 547
||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||
Sbjct: 649 gtagttgtccttgtcggcgtccacgaagacgaagtcgaaggtgccgtggttggcctcgtc 590
Query: 548 cgcgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggc 607
| ||| |||| |||| |||||||||||||| || ||||||||||||||||||||||| ||
Sbjct: 589 ctcgaggagggcgtccaggacggggagcgccgggccctcgcggaagtcgatcttgtgcgc 530
Query: 608 gacgccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccat 667
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 529 cacgccggccttctcgatgcacggcagccccagctcgtagttctcgcggttgatgtccat 470
Query: 668 ggccaagatcgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggt 727
||||||||| |||||||| || |||| ||||||||| |||||||| ||||||||||| ||
Sbjct: 469 ggccaagatggtgccgtcgtcggggatggcgagcgcggtggcgagcagggagtagcccgt 410
Query: 728 gtagacgccgatctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaa 787
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 409 gtagacgccgatctccatggtcttcttggcgccgatgagcttgagcagcatgttgaggaa 350
Query: 788 ctgcccctcgtcggcggaggtcgtcatcaggttccatgggtgcttggcggtgatctcgcg 847
||| |||||||| || || ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 349 ctggccctcgtccgccgacgtcgtcatcaggttccatgggtggttggcggtgatctcgcg 290
Query: 848 gagctccttcatgctctccggctcccgcgggtacacgctcgtgtccaggatgtactggta 907
|||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct: 289 gagctccttcatgcactcgtgctcgcgcgggtacacgctcgtctccaggatgtactggta 230
Query: 908 gaggtcgtcgctcttgagcaggctcttgtggccgacctcggagtgccgcgtcttctgctc 967
|||| ||||||||| ||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 229 gagggcgtcgctctggagcaggctcttgtgtccgacctcggagtggcgcgtgacctgctc 170
Query: 968 gccg 971
||||
Sbjct: 169 gccg 166
>gb|BI958809.1|BI958809 HVSMEn0016L12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016L12f, mRNA sequence
Length = 649
Score = 589 bits (297), Expect = e-167
Identities = 427/469 (91%), Gaps = 1/469 (0%)
Strand = Plus / Minus
Query: 479 gtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggtt 538
|||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct: 649 gtagttgaggtagttgtcct-gtcggcgtccacgaagacgaagtcgaaggtgccgtggtt 591
Query: 539 cttctcctccgcgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgat 598
||| || ||| |||| |||| |||||||||||||| || |||||||||||||||||
Sbjct: 590 ggcctcgtctccgaggagggcgtccaggacggggagcgccgggccctcgcggaagtcgat 531
Query: 599 cttgtgggcgacgccggccttctcgatgcagggcaggcccagctcgtagttctcgcggtt 658
|||||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 530 cttgtgcgccacgccggccttctcgatgcacggcagccccagctcgtagttctcgcggtt 471
Query: 659 gatgtccatggccaagatcgtgccgtcctccgggagggcgagcgccgtggcgaggaggga 718
|||||||||||||||||| |||||||| || |||| ||||||||| |||||||| |||||
Sbjct: 470 gatgtccatggccaagatggtgccgtcgtcggggatggcgagcgcggtggcgagcaggga 411
Query: 719 gtagccggtgtagacgccgatctccatggtcttcttggcgccgatgagcttgatgagcat 778
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 410 gtagcccgtgtagacgccgatctccatggtcttcttggcgccgatgagcttgagcagcat 351
Query: 779 gttcaggaactgcccctcgtcggcggaggtcgtcatcaggttccatgggtgcttggcggt 838
||| |||||||| |||||||| || || ||||||||||||||||||||||| ||||||||
Sbjct: 350 gttgaggaactggccctcgtccgccgacgtcgtcatcaggttccatgggtggttggcggt 291
Query: 839 gatctcgcggagctccttcatgctctccggctcccgcgggtacacgctcgtgtccaggat 898
||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||
Sbjct: 290 gatctcgcggagctccttcatgcactcgtgctcgcgcgggtacacgctcgtctccaggat 231
Query: 899 gtactggtagaggtcgtcgctcttgagcaggctcttgtggccgacctcg 947
||||||||||||| ||||||||| ||||||||||||||| |||||||||
Sbjct: 230 gtactggtagagggcgtcgctctggagcaggctcttgtgtccgacctcg 182
>gb|BI960531.1|BI960531 HVSMEn0024O24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024O24f, mRNA sequence
Length = 631
Score = 581 bits (293), Expect = e-164
Identities = 428/473 (90%)
Strand = Plus / Minus
Query: 499 tgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccgcgatgaggt 558
|||| ||||||||||||||||||||||| | |||||||| ||| ||| ||| ||||
Sbjct: 621 tgtccgcgtccacgaagacgaagtcgaaggtgccgtggttggcctcgtcctcgaggaggg 562
Query: 559 cgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcgacgccggcct 618
|||| |||||||||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct: 561 cgtccaggacggggagcgcagggccctcgcggaagtcgatcttgtgcgccacgccggcct 502
Query: 619 tctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatggccaagatcg 678
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 tctcgatgcacggcagccccagctcgtagttctcgcggttgatgtccatggccaagatgg 442
Query: 679 tgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtgtagacgccga 738
||||||| || |||| ||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 441 tgccgtcgtcggggatggcgagcgcggtggcgagcagggagtagcccgtgtagacgccga 382
Query: 739 tctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaactgcccctcgt 798
||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct: 381 tctccatggtcttcttggcgccgatgagcttgagcagcatgttgaggaactggccctcgt 322
Query: 799 cggcggaggtcgtcatcaggttccatgggtgcttggcggtgatctcgcggagctccttca 858
| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ccgccgacgtcgtcatcaggttccatgggtggttggcggtgatctcgcggagctccttca 262
Query: 859 tgctctccggctcccgcgggtacacgctcgtgtccaggatgtactggtagaggtcgtcgc 918
||| ||| |||| ||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 261 tgcactcgtgctcgcgcgggtacacgctcgtctccaggatgtactggtagagggcgtcgc 202
Query: 919 tcttgagcaggctcttgtggccgacctcggagtgccgcgtcttctgctcgccg 971
||| ||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct: 201 tctggagcaggctcttgtgtccgacctcggagtggcgcgtgacctgctcgccg 149
>gb|BF623901.2|BF623901 HVSMEa0007J15f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0007J15f, mRNA sequence
Length = 491
Score = 539 bits (272), Expect = e-152
Identities = 416/464 (89%)
Strand = Plus / Minus
Query: 508 ccacgaagacgaagtcgaacgacccgtggttcttctcctccgcgatgaggtcgtcgagga 567
||||||||||||||||||| | |||||||| || ||| ||| |||| |||| ||||
Sbjct: 491 ccacgaagacgaagtcgaaggtgccgtggttggcatcgtcctcgaggagggcgtccagga 432
Query: 568 cggggagcgcgggaccctcgcggaagtcgatcttgtgggcgacgccggccttctcgatgc 627
|||||||||| || ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 431 cggggagcgccgggccctcgcggaagtcgatcttgtgcgccacgccggccttctcgatgc 372
Query: 628 agggcaggcccagctcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcct 687
| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 371 acggcagccccagctcgtagttctcgcggttgatgtccatggccaagatggtgccgtcgt 312
Query: 688 ccgggagggcgagcgccgtggcgaggagggagtagccggtgtagacgccgatctccatgg 747
| |||| ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 311 cggggatggcgagcgcggtggcgagcagggagtagcccgtgtagacgccgatctccatgg 252
Query: 748 tcttcttggcgccgatgagcttgatgagcatgttcaggaactgcccctcgtcggcggagg 807
|||||||||||||||||||||||| |||||||| |||||||| |||||||| || || |
Sbjct: 251 tcttcttggcgccgatgagcttgagcagcatgttgaggaactggccctcgtccgccgacg 192
Query: 808 tcgtcatcaggttccatgggtgcttggcggtgatctcgcggagctccttcatgctctccg 867
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||
Sbjct: 191 tcgtcatcaggttccatgggtggttgacggtgatctcgcggagctccttcatgcactcgt 132
Query: 868 gctcccgcgggtacacgctcgtgtccaggatgtactggtagaggtcgtcgctcttgagca 927
|||| ||||||||||||||||| | ||||||||||||||||||| ||||||||| |||||
Sbjct: 131 gctcgcgcgggtacacgctcgtcttcaggatgtactggtagagggcgtcgctctggagca 72
Query: 928 ggctcttgtggccgacctcggagtgccgcgtcttctgctcgccg 971
|||||||||| |||||||||||| | ||||| ||||||||||
Sbjct: 71 ggctcttgtgtccgacctcggagcggcgcgtgacctgctcgccg 28
>gb|BI954074.1|BI954074 HVSMEm0016B12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0016B12f, mRNA sequence
Length = 671
Score = 529 bits (267), Expect = e-149
Identities = 378/414 (91%), Gaps = 1/414 (0%)
Strand = Plus / Minus
Query: 559 cgtcgaggacggggagcgc-gggaccctcgcggaagtcgatcttgtgggcgacgccggcc 617
|||| |||||||||||| | ||| |||||||| |||||||||||||| || |||||||||
Sbjct: 643 cgtccaggacggggagccccggggccctcgcgnaagtcgatcttgtgcgccacgccggcc 584
Query: 618 ttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatggccaagatc 677
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ttctcgatgcacggcagccccagctcgtagttctcgcggttgatgtccatggccaagatg 524
Query: 678 gtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtgtagacgccg 737
|||||||| || |||| ||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 523 gtgccgtcgtcggggatggcgagcgcggtggcgagcagggagtagcccgtgtagacgccg 464
Query: 738 atctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaactgcccctcg 797
|||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct: 463 atctccatggtcttcttggcgccgatgagcttgagcagcatgttgaggaactggccctcg 404
Query: 798 tcggcggaggtcgtcatcaggttccatgggtgcttggcggtgatctcgcggagctccttc 857
|| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 403 tccgccgacgtcgtcatcaggttccatgggtggttggcggtgatctcgcggagctccttc 344
Query: 858 atgctctccggctcccgcgggtacacgctcgtgtccaggatgtactggtagaggtcgtcg 917
|||| ||| |||| ||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 343 atgcactcgtgctcgcgcgggtacacgctcgtctccaggatgtactggtagagggcgtcg 284
Query: 918 ctcttgagcaggctcttgtggccgacctcggagtgccgcgtcttctgctcgccg 971
|||| ||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct: 283 ctctggagcaggctcttgtgtccgacctcggagtggcgcgtgacctgctcgccg 230
>gb|CA030887.1|CA030887 HX08G19r HX Hordeum vulgare subsp. vulgare cDNA clone HX08G19
5-PRIME, mRNA sequence
Length = 577
Score = 492 bits (248), Expect = e-137
Identities = 359/396 (90%)
Strand = Plus / Plus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 182 ttcacttggcgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcga 241
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgga 369
|||| | |||||||||||| |||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 242 cgcgctggtcggcggcgagggccttgttgaggtcgaggacgaagtcgcggtagtagcgga 301
Query: 370 tgtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgt 429
|||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||
Sbjct: 302 tgtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagggtgttgt 361
Query: 430 cgtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggt 489
||||||||| ||||||||| | ||| || ||||||| || |||||||||||||||||||
Sbjct: 362 cgtagccgaggaggccgccgaccttgacgagcttcatgaggcgctcgtggtagttgaggt 421
Query: 490 agttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccg 549
||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||
Sbjct: 422 agttgtccttgtcggcgtccacgaagacgaagtcgaaggtgccgtggttggcctcgtcct 481
Query: 550 cgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcga 609
||| |||| |||| |||||||||||||| || ||||||||||||||||||||||| || |
Sbjct: 482 cgaggagggcgtccaggacggggagcgccgggccctcgcggaagtcgatcttgtgcgcca 541
Query: 610 cgccggccttctcgatgcagggcaggcccagctcgt 645
||||||||||||||||||| ||||| ||||||||||
Sbjct: 542 cgccggccttctcgatgcacggcagccccagctcgt 577
>gb|BU994274.1|BU994274 HM06H04r HM Hordeum vulgare subsp. vulgare cDNA clone HM06H04
5-PRIME, mRNA sequence
Length = 598
Score = 490 bits (247), Expect = e-137
Identities = 334/363 (92%)
Strand = Plus / Minus
Query: 609 acgccggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatg 668
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 593 acgccggccttctcgatgcacggcagccccagctcgtagttctcgcggttgatgtccatg 534
Query: 669 gccaagatcgtgccgtcctccgggagggcgagcgccgtggcgaggagggagtagccggtg 728
|||||||| |||||||| || |||| ||||||||| |||||||| ||||||||||| |||
Sbjct: 533 gccaagatggtgccgtcgtcggggatggcgagcgcggtggcgagcagggagtagcccgtg 474
Query: 729 tagacgccgatctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaac 788
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 473 tagacgccgatctccatggtcttcttggcgccgatgagcttgagcagcatgttgaggaac 414
Query: 789 tgcccctcgtcggcggaggtcgtcatcaggttccatgggtgcttggcggtgatctcgcgg 848
|| |||||||| || || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 413 tggccctcgtccgccgacgtcgtcatcaggttccatgggtggttggcggtgatctcgcgg 354
Query: 849 agctccttcatgctctccggctcccgcgggtacacgctcgtgtccaggatgtactggtag 908
||||||||||||| ||| |||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 353 agctccttcatgcactcgtgctcgcgcgggtacacgctcgtctccaggatgtactggtag 294
Query: 909 aggtcgtcgctcttgagcaggctcttgtggccgacctcggagtgccgcgtcttctgctcg 968
||| ||||||||| ||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct: 293 agggcgtcgctctggagcaggctcttgtgtccgacctcggagtggcgcgtgacctgctcg 234
Query: 969 ccg 971
|||
Sbjct: 233 ccg 231
>gb|BI960325.1|BI960325 HVSMEn0024D19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024D19f, mRNA sequence
Length = 591
Score = 478 bits (241), Expect = e-133
Identities = 349/385 (90%)
Strand = Plus / Minus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 ttcacttggcgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcga 326
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgga 369
|||| | |||||||||||| |||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 325 cgcgctggtcggcggcgagggccttgttgaggtcgaggacgaagtcgcggtagtagcgga 266
Query: 370 tgtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgt 429
|||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||
Sbjct: 265 tgtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagggtgttgt 206
Query: 430 cgtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggt 489
||||||||| ||||||||| | ||| || ||||||| || |||||||||||||||||||
Sbjct: 205 cgtagccgaggaggccgccgaccttgacgagcttcatgaggcgctcgtggtagttgaggt 146
Query: 490 agttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccg 549
||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||
Sbjct: 145 agttgtccttgtcggcgtccacgaagacgaagtcgaaggtgccgtggttggcctcgtcct 86
Query: 550 cgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcga 609
||| |||| |||| |||||||||||||| || ||||||||||||||||||||||| || |
Sbjct: 85 cgaggagggcgtccaggacggggagcgccgggccctcgcggaagtcgatcttgtgcgcca 26
Query: 610 cgccggccttctcgatgcagggcag 634
||||||||||||||||||| |||||
Sbjct: 25 cgccggccttctcgatgcacggcag 1
>gb|BU979082.1|BU979082 HA15B18r HA Hordeum vulgare subsp. vulgare cDNA clone HA15B18
5-PRIME, mRNA sequence
Length = 593
Score = 478 bits (241), Expect = e-133
Identities = 349/385 (90%)
Strand = Plus / Minus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 395 ttcacttggcgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcga 336
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgga 369
|||| | |||||||||||| |||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 335 cgcgctggtcggcggcgagggccttgttgaggtcgaggacgaagtcgcggtagtagcgga 276
Query: 370 tgtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgt 429
|||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||
Sbjct: 275 tgtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagggtgttgt 216
Query: 430 cgtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggt 489
||||||||| ||||||||| | ||| || ||||||| || |||||||||||||||||||
Sbjct: 215 cgtagccgaggaggccgccgaccttgacgagcttcatgaggcgctcgtggtagttgaggt 156
Query: 490 agttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccg 549
||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||
Sbjct: 155 agttgtccttgtcggcgtccacgaagacgaagtcgaaggtgccgtggttggcctcgtcct 96
Query: 550 cgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcga 609
||| |||| |||| |||||||||||||| || ||||||||||||||||||||||| || |
Sbjct: 95 cgaggagggcgtccaggacggggagcgccgggccctcgcggaagtcgatcttgtgcgcca 36
Query: 610 cgccggccttctcgatgcagggcag 634
||||||||||||||||||| |||||
Sbjct: 35 cgccggccttctcgatgcacggcag 11
>gb|BU979265.1|BU979265 HA15J22r HA Hordeum vulgare subsp. vulgare cDNA clone HA15J22
5-PRIME, mRNA sequence
Length = 507
Score = 478 bits (241), Expect = e-133
Identities = 349/385 (90%)
Strand = Plus / Minus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 395 ttcacttggcgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcga 336
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgga 369
|||| | |||||||||||| |||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 335 cgcgctggtcggcggcgagggccttgttgaggtcgaggacgaagtcgcggtagtagcgga 276
Query: 370 tgtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgt 429
|||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||
Sbjct: 275 tgtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagggtgttgt 216
Query: 430 cgtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggt 489
||||||||| ||||||||| | ||| || ||||||| || |||||||||||||||||||
Sbjct: 215 cgtagccgaggaggccgccgaccttgacgagcttcatgaggcgctcgtggtagttgaggt 156
Query: 490 agttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccg 549
||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||
Sbjct: 155 agttgtccttgtcggcgtccacgaagacgaagtcgaaggtgccgtggttggcctcgtcct 96
Query: 550 cgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcga 609
||| |||| |||| |||||||||||||| || ||||||||||||||||||||||| || |
Sbjct: 95 cgaggagggcgtccaggacggggagcgccgggccctcgcggaagtcgatcttgtgcgcca 36
Query: 610 cgccggccttctcgatgcagggcag 634
||||||||||||||||||| |||||
Sbjct: 35 cgccggccttctcgatgcacggcag 11
>gb|CB859935.1|CB859935 HI12A22w HI Hordeum vulgare subsp. vulgare cDNA clone HI12A22
3-PRIME, mRNA sequence
Length = 549
Score = 478 bits (241), Expect = e-133
Identities = 349/385 (90%)
Strand = Plus / Plus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 164 ttcacttggcgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcga 223
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgga 369
|||| | |||||||||||| |||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 224 cgcgctggtcggcggcgagggccttgttgaggtcgaggacgaagtcgcggtagtagcgga 283
Query: 370 tgtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgt 429
|||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||
Sbjct: 284 tgtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagggtgttgt 343
Query: 430 cgtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggt 489
||||||||| ||||||||| | ||| || ||||||| || |||||||||||||||||||
Sbjct: 344 cgtagccgaggaggccgccgaccttgacgagcttcatgaggcgctcgtggtagttgaggt 403
Query: 490 agttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccg 549
||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||
Sbjct: 404 agttgtccttgtcggcgtccacgaagacgaagtcgaaggtgccgtggttggcctcgtcct 463
Query: 550 cgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcga 609
||| |||| |||| |||||||||||||| || ||||||||||||||||||||||| || |
Sbjct: 464 cgaggagggcgtccaggacggggagcgccgggccctcgcggaagtcgatcttgtgcgcca 523
Query: 610 cgccggccttctcgatgcagggcag 634
||||||||||||||||||| |||||
Sbjct: 524 cgccggccttctcgatgcacggcag 548
>gb|CB859954.1|CB859954 HI12C04w HI Hordeum vulgare subsp. vulgare cDNA clone HI12C04
3-PRIME, mRNA sequence
Length = 552
Score = 476 bits (240), Expect = e-133
Identities = 353/391 (90%)
Strand = Plus / Plus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 162 ttcacttggcgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcga 221
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgga 369
|||| | |||||||||||| |||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 222 cgcgctggtcggcggcgagggccttgttgaggtcgaggacgaagtcgcggtagtagcgga 281
Query: 370 tgtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgt 429
|||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||
Sbjct: 282 tgtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagggtgttgt 341
Query: 430 cgtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggt 489
|||| |||| ||||||||| | ||| || ||||||| || |||||||||||||||||||
Sbjct: 342 cgtanccgaggaggccgccgaccttgacgagcttcatgaggcgctcgtggtagttgaggt 401
Query: 490 agttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccg 549
||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||
Sbjct: 402 agttgtccttgtcggcgtccacgaagacgaagtcgaaggtgccgtggttggcctcgtcct 461
Query: 550 cgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcga 609
||| |||| |||| |||||||||||||| || ||||||||||||||||||||||| || |
Sbjct: 462 cgaggagggcgtccaggacggggagcgccgggccctcgcggaagtcgatcttgtgcgcca 521
Query: 610 cgccggccttctcgatgcagggcaggcccag 640
||||||||||||||||||| ||||| |||||
Sbjct: 522 cgccggccttctcgatgcacggcagccccag 552
>gb|BQ754341.1|BQ754341 EBca01_SQ003_K07_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ003_K07 5', mRNA sequence
Length = 489
Score = 426 bits (215), Expect = e-118
Identities = 295/322 (91%)
Strand = Plus / Minus
Query: 650 ctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgccgtggc 709
||||||||||||||||||||||||||| |||||||| ||||||| ||||||||| |||||
Sbjct: 489 ctcgcggttgatgtccatggccaagatggtgccgtcgtccgggatggcgagcgcggtggc 430
Query: 710 gaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgccgatgagctt 769
||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 429 gagcagggagtagcccgtgtagacgccgatctccatggtcttcttggggccgatgagctt 370
Query: 770 gatgagcatgttcaggaactgcccctcgtcggcggaggtcgtcatcaggttccatgggtg 829
|| |||||||| |||||||| |||||||| || || |||||||||||||||||||||||
Sbjct: 369 gagcagcatgttgaggaactggccctcgtccgcngacgtcgtcatcaggttccatgggtg 310
Query: 830 cttggcggtgatctcgcggagctccttcatgctctccggctcccgcgggtacacgctcgt 889
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct: 309 gttggcggtgatctcgcggagctccttcatgcactcgtgctcgcgcgggtacacgctcgt 250
Query: 890 gtccaggatgtactggtagaggtcgtcgctcttgagcaggctcttgtggccgacctcgga 949
||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||
Sbjct: 249 ctccaggatgtactggtagagggcgtcgctctggagcaggctcttgtgtccgacctcgga 190
Query: 950 gtgccgcgtcttctgctcgccg 971
||| ||||| ||||||||||
Sbjct: 189 gtggcgcgtgacctgctcgccg 168
>gb|BQ763567.1|BQ763567 EBro02_SQ008_E22_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_E22 5', mRNA sequence
Length = 425
Score = 391 bits (197), Expect = e-107
Identities = 257/277 (92%)
Strand = Plus / Minus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 284 ttcacttggcgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcga 225
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgga 369
|||| | |||||||||||| |||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 224 cgcgctggtcggcggcgagggccttgttgaggtcgaggacgaagtcgcggtagtagcgga 165
Query: 370 tgtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgt 429
|||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||
Sbjct: 164 tgtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagggtgttgt 105
Query: 430 cgtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggt 489
||||||||| ||||||||| | ||| || ||||||| || |||||||||||||||||||
Sbjct: 104 cgtagccgaggaggccgccgaccttgacgagcttcatgaggcgctcgtggtagttgaggt 45
Query: 490 agttgtccttgtcggcgtccacgaagacgaagtcgaa 526
|||||||||||||||||||||||||||||||||||||
Sbjct: 44 agttgtccttgtcggcgtccacgaagacgaagtcgaa 8
>gb|CA001451.1|CA001451 HS17P10u HS Hordeum vulgare subsp. vulgare cDNA clone HS17P10
3-PRIME, mRNA sequence
Length = 423
Score = 391 bits (197), Expect = e-107
Identities = 257/277 (92%)
Strand = Plus / Plus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 144 ttcacttggcgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcga 203
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgga 369
|||| | |||||||||||| |||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 204 cgcgctggtcggcggcgagggccttgttgaggtcgaggacgaagtcgcggtagtagcgga 263
Query: 370 tgtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgt 429
|||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||
Sbjct: 264 tgtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagggtgttgt 323
Query: 430 cgtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggt 489
||||||||| ||||||||| | ||| || ||||||| || |||||||||||||||||||
Sbjct: 324 cgtagccgaggaggccgccgaccttgacgagcttcatgaggcgctcgtggtagttgaggt 383
Query: 490 agttgtccttgtcggcgtccacgaagacgaagtcgaa 526
|||||||||||||||||||||||||||||||||||||
Sbjct: 384 agttgtccttgtcggcgtccacgaagacgaagtcgaa 420
>gb|CB880406.1|CB880406 HM06H04w HM Hordeum vulgare subsp. vulgare cDNA clone HM06H04
3-PRIME, mRNA sequence
Length = 492
Score = 391 bits (197), Expect = e-107
Identities = 257/277 (92%)
Strand = Plus / Plus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 204 ttcacttggcgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcga 263
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgga 369
|||| | |||||||||||| |||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 264 cgcgctggtcggcggcgagggccttgttgaggtcgaggacgaagtcgcggtagtagcgga 323
Query: 370 tgtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgt 429
|||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||
Sbjct: 324 tgtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagggtgttgt 383
Query: 430 cgtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggt 489
||||||||| ||||||||| | ||| || ||||||| || |||||||||||||||||||
Sbjct: 384 cgtagccgaggaggccgccgaccttgacgagcttcatgaggcgctcgtggtagttgaggt 443
Query: 490 agttgtccttgtcggcgtccacgaagacgaagtcgaa 526
|||||||||||||||||||||||||||||||||||||
Sbjct: 444 agttgtccttgtcggcgtccacgaagacgaagtcgaa 480
>gb|BM097007.2|BM097007 EBpi07_SQ002_B16_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ002_B16 5', mRNA sequence
Length = 504
Score = 383 bits (193), Expect = e-105
Identities = 311/347 (89%), Gaps = 5/347 (1%)
Strand = Plus / Minus
Query: 625 tgcagggcaggcccagctcgtagttctcgcggttgatgtccatggccaagatcgtgccgt 684
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 504 tgcacggcagccccagctcgtagttctcgcggttgatgtccatggccaagatggtgccgt 445
Query: 685 cctccgggagggcgagcgccgtggcgaggagggagtagccggtgtagacgccgatctcca 744
| || |||| ||||||||| |||||||| ||||||||||| |||||||||||||||| ||
Sbjct: 444 cgtcggggatggcgagcgcggtggcgagcagggagtagcccgtgtagacgccgatctgca 385
Query: 745 tggtcttcttggcgccgatgagcttgatgagcatgttcaggaactgcccctcgtcggcgg 804
||||||||||||||||||||||||||| |||||||| |||||||| |||||||| || |
Sbjct: 384 tggtcttcttggcgccgatgagcttgagcagcatgttgaggaactggccctcgtccgccg 325
Query: 805 aggtcgtcatcaggttccatgggtgcttggcggtgatctcgcggagctccttcatgctct 864
| ||||||||||||||||||||||| | |||||||||| | ||||| |||||||| ||
Sbjct: 324 acgtcgtcatcaggttccatgggtggt--gcggtgatct--ccgagct-cttcatgcact 270
Query: 865 ccggctcccgcgggtacacgctcgtgtccaggatgtactggtagaggtcgtcgctcttga 924
| |||| ||||||||||||||||| ||||||||||||||||||||| ||||||||| ||
Sbjct: 269 cgtgctcgcgcgggtacacgctcgtctccaggatgtactggtagagggcgtcgctctgga 210
Query: 925 gcaggctcttgtggccgacctcggagtgccgcgtcttctgctcgccg 971
||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct: 209 gcaggctcttgtgtccgacctcggagtggcgcgtgacctgctcgccg 163
>gb|BJ549697.1|BJ549697 BJ549697 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28c08 3', mRNA sequence
Length = 422
Score = 367 bits (185), Expect = e-100
Identities = 245/265 (92%)
Strand = Plus / Plus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 158 ttcacttggcgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcga 217
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgga 369
|||| | |||||||||||| |||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 218 cgcgctggtcggcggcgagggccttgttgaggtcgaggacgaagtcgcggtagtagcgga 277
Query: 370 tgtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgt 429
|||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||
Sbjct: 278 tgtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagggtgttgt 337
Query: 430 cgtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggt 489
||||||||| ||||||||| | ||| || ||||||| || |||||||||||||||||||
Sbjct: 338 cgtagccgaggaggccgccgaccttgacgagcttcatgaggcgctcgtggtagttgaggt 397
Query: 490 agttgtccttgtcggcgtccacgaa 514
|||||||||||||||||||||||||
Sbjct: 398 agttgtccttgtcggcgtccacgaa 422
>gb|BI956599.1|BI956599 HVSMEn0004F14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004F14f, mRNA sequence
Length = 819
Score = 317 bits (160), Expect = 4e-085
Identities = 348/408 (85%), Gaps = 2/408 (0%)
Strand = Plus / Minus
Query: 554 gaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcgacgcc 613
|||| |||| |||||||||||||| || |||||| || ||||||||||||| || |||||
Sbjct: 578 gagggcgtccaggacggggagcgccgggccctcgtggtagtcgatcttgtgcgccacgcc 519
Query: 614 ggccttctcgatgcagggcaggcccagctcgtagttctcgcggttgatgtccatggccaa 673
|||||| | |||||| ||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 518 ggccttgtagatgcacggcagccccagctcgtagttctagcggttgatgtccatggccaa 459
Query: 674 gatcgtgccgtcctccgggagggcgagcgccgtg-gcgaggagggagtagccggtgtaga 732
||| || ||||| || |||| | ||||| | ||| ||||| || |||||||| |||||||
Sbjct: 458 gatggtcccgtcgtcggggatgtcgagctcggtgagcgagcagcgagtagcccgtgtaga 399
Query: 733 cgccgatctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaactgcc 792
||||||||||||||||||||||||||||||| ||||||| ||||||| || ||||| |
Sbjct: 398 cgccgatctccatggtcttcttggcgccgatcagcttgagccgcatgttgagtaactggc 339
Query: 793 cctcgtcggcggaggtcgtcatcaggttccatgggtgcttggcggtgatctcgcggagct 852
| ||||| | || || |||||||||||||||||||| ||| ||||||| | |||||| |
Sbjct: 338 catcgtcccctgatgtagtcatcaggttccatgggtggttgccggtgatttggcggagtt 279
Query: 853 ccttcatgctctccggctcccgcgggtacacgctcgtgtccaggatgtactggtagag-g 911
||||||||| || |||| | ||||||||||| || |||||||||||||||||||| |
Sbjct: 278 ccttcatgcactggtgctcgtgagggtacacgcttgtctccaggatgtactggtagagtg 219
Query: 912 tcgtcgctcttgagcaggctcttgtggccgacctcggagtgccgcgtc 959
|||||||| |||||||||||||| ||||||| |||||| ||||||
Sbjct: 218 gagtcgctctgtagcaggctcttgtgtccgacctgggagtggcgcgtc 171
>gb|CA028078.1|CA028078 HZ60O17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60O17
5-PRIME, mRNA sequence
Length = 413
Score = 315 bits (159), Expect = 2e-084
Identities = 219/239 (91%)
Strand = Plus / Minus
Query: 733 cgccgatctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaactgcc 792
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct: 413 cgccgatctccatggtcttcttggcgccgatgagcttgagcagcatgttgaggaactggc 354
Query: 793 cctcgtcggcggaggtcgtcatcaggttccatgggtgcttggcggtgatctcgcggagct 852
||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 353 cctcgtccgccgacgtcgtcatcaggttccatgggtggttggcggtgatctcgcggagct 294
Query: 853 ccttcatgctctccggctcccgcgggtacacgctcgtgtccaggatgtactggtagaggt 912
||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 293 ccttcatgcactcgtgctcgcgcgggtacacgctcgtctccaggatgtactggtagaggg 234
Query: 913 cgtcgctcttgagcaggctcttgtggccgacctcggagtgccgcgtcttctgctcgccg 971
||||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct: 233 cgtcgctctggagcaggctcttgtgtccgacctcggagtggcgcgtgacctgctcgccg 175
>gb|CA024014.1|CA024014 HZ48B24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48B24
5-PRIME, mRNA sequence
Length = 397
Score = 305 bits (154), Expect = 2e-081
Identities = 214/234 (91%)
Strand = Plus / Minus
Query: 738 atctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaactgcccctcg 797
|||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct: 397 atctccatggtcttcttggcgccgatgagcttgagcagcatgttgaggaactggccctcg 338
Query: 798 tcggcggaggtcgtcatcaggttccatgggtgcttggcggtgatctcgcggagctccttc 857
|| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 337 tccgccgacgtcgtcatcaggttccatgggtggttggcggtgatctcgcggagctccttc 278
Query: 858 atgctctccggctcccgcgggtacacgctcgtgtccaggatgtactggtagaggtcgtcg 917
|||| ||| |||| ||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 277 atgcactcgtgctcgcgcgggtacacgctcgtctccaggatgtactggtagagggcgtcg 218
Query: 918 ctcttgagcaggctcttgtggccgacctcggagtgccgcgtcttctgctcgccg 971
|||| ||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct: 217 ctctggagcaggctcttgtgtccgacctcggagtggcgcgtgacctgctcgccg 164
>gb|BI780660.2|BI780660 EBes01_SQ001_K19_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ001_K19 5', mRNA sequence
Length = 374
Score = 301 bits (152), Expect = 3e-080
Identities = 212/232 (91%)
Strand = Plus / Minus
Query: 740 ctccatggtcttcttggcgccgatgagcttgatgagcatgttcaggaactgcccctcgtc 799
|||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 374 ctccatggtcttcttggcgccgatgagcttgagcagcatgttgaggaactggccctcgtc 315
Query: 800 ggcggaggtcgtcatcaggttccatgggtgcttggcggtgatctcgcggagctccttcat 859
|| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 314 cgccgacgtcgtcatcaggttccatgggtggttggcggtgatctcgcggagctccttcat 255
Query: 860 gctctccggctcccgcgggtacacgctcgtgtccaggatgtactggtagaggtcgtcgct 919
|| ||| |||| ||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 254 gcactcgtgctcgcgcgggtacacgctcgtctccaggatgtactggtagagggcgtcgct 195
Query: 920 cttgagcaggctcttgtggccgacctcggagtgccgcgtcttctgctcgccg 971
|| ||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct: 194 ctggagcaggctcttgtgtccgacctcggagtggcgcgtgacctgctcgccg 143
>gb|BE602379.3|BE602379 HVSMEh0098L05f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0098L05f, mRNA sequence
Length = 409
Score = 285 bits (144), Expect = 2e-075
Identities = 183/196 (93%)
Strand = Plus / Minus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 211 ttcacttggcgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcga 152
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgga 369
|||| | |||||||||||| |||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 151 cgcgctggtcggcggcgagggccttgttgaggtcgaggacgaagtcgcggtagtagcgga 92
Query: 370 tgtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgt 429
|||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||
Sbjct: 91 tgtacttgcgcatgggggcgtcggcggggagcacgacggagccgttccagagggtgttgt 32
Query: 430 cgtagccgatgaggcc 445
||||||||| ||||||
Sbjct: 31 cgtagccgaggaggcc 16
>gb|BF065210.2|BF065210 HV_CEb0024C21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024C21f, mRNA sequence
Length = 839
Score = 230 bits (116), Expect = 8e-059
Identities = 191/216 (88%)
Strand = Plus / Plus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 221 ttcacttggcgcggcggcagagggtgatgccgtcgccgacggggagctggcaaatctcga 280
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgga 369
|||| | ||||||||| || |||||||||||| | || || ||||| ||||| ||||||
Sbjct: 281 cgcgctggtcggcggcaagggccttgttgaggtcaaggacaaagtctcggtactagcgga 340
Query: 370 tgtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgt 429
|||||||||||||||| |||||| |||||||||||||||| |||||||| || |||||||
Sbjct: 341 tgtacttgcgcatgggggcgtcggcggggagcacgacggaaccgttccagagggtgttgt 400
Query: 430 cgtagccgatgaggccgcccagcttcaccagcttca 465
|||| |||| ||||||||| | ||| || |||||||
Sbjct: 401 cgtaaccgaggaggccgccaaccttgacgagcttca 436
>gb|BQ753902.1|BQ753902 EBca01_SQ002_D12_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ002_D12 5', mRNA sequence
Length = 321
Score = 198 bits (100), Expect = 3e-049
Identities = 142/156 (91%)
Strand = Plus / Minus
Query: 816 aggttccatgggtgcttggcggtgatctcgcggagctccttcatgctctccggctcccgc 875
|||||||||||||| ||||||||||||||||||||||| ||||||| ||| |||| |||
Sbjct: 321 aggttccatgggtggttggcggtgatctcgcggagctctttcatgcactcgtgctcgcgc 262
Query: 876 gggtacacgctcgtgtccaggatgtactggtagaggtcgtcgctcttgagcaggctcttg 935
|||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 261 gggtacacgctcgtctccaggatgtactggtagagggcgtcgctctggagcaggctcttg 202
Query: 936 tggccgacctcggagtgccgcgtcttctgctcgccg 971
|| |||||||||||||| ||||| ||||||||||
Sbjct: 201 tgtccgacctcggagtggcgcgtgacctgctcgccg 166
>gb|BJ545234.1|BJ545234 BJ545234 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak46l01 5', mRNA sequence
Length = 337
Score = 190 bits (96), Expect = 7e-047
Identities = 123/132 (93%)
Strand = Plus / Minus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 145 ttcacttggcgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcga 86
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgga 369
|||| | |||||||||||| ||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 85 cgcgttggtcggcggcgagggccttgttgagctcgaggacgaagtcgcggtagtagcgga 26
Query: 370 tgtacttgcgca 381
||||||||||||
Sbjct: 25 tgtacttgcgca 14
>gb|BJ546714.1|BJ546714 BJ546714 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak46l01 3', mRNA sequence
Length = 286
Score = 190 bits (96), Expect = 7e-047
Identities = 123/132 (93%)
Strand = Plus / Plus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 154 ttcacttggcgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcga 213
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgga 369
|||| | |||||||||||| ||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 214 cgcgttggtcggcggcgagggccttgttgagctcgaggacgaagtcgcggtagtagcgga 273
Query: 370 tgtacttgcgca 381
||||||||||||
Sbjct: 274 tgtacttgcgca 285
>gb|BM928851.1|BM928851 LP20008 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-8
similar to Caffeoyl CoA O-methyl transferase, mRNA
sequence
Length = 217
Score = 170 bits (86), Expect = 6e-041
Identities = 115/125 (92%)
Strand = Plus / Minus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 125 ttcacttggcgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcga 66
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgga 369
|||| | |||||||||||| |||||||||||| |||| | ||||||||||||| |||| |
Sbjct: 65 cgcgctggtcggcggcgagggccttgttgaggtcgaggangaagtcgcggtagtagcgaa 6
Query: 370 tgtac 374
|||||
Sbjct: 5 tgtac 1
>gb|BF627066.2|BF627066 HVSMEb0002G16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0002G16f, mRNA sequence
Length = 684
Score = 141 bits (71), Expect = 6e-032
Identities = 241/297 (81%), Gaps = 3/297 (1%)
Strand = Plus / Minus
Query: 464 cagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 523
||||||| ||||||||||| || |||||||| ||||||||||||||||||| |||||||
Sbjct: 586 cagcagctgctcgtggtagctgccgtagttgtacttgtcggcgtccacgaaggcgaagtc 527
Query: 524 gaacgacccgtggttcttctcctccgcgatgaggtcgtcgaggacggggagcgcgggacc 583
||| ||| | || || | || |||||||| | |||||||| |||| ||||| ||
Sbjct: 526 gaagctcccctcgtcct---cgtcggcgatgagcttgtcgaggatggggccggcggggcc 470
Query: 584 ctcgcggaagtcgatcttgtgggcgacgccggccttctcgatgcagggcaggcccagctc 643
|||||||||||||| |||||| |||||||||||||||| |||| ||| ||||| || ||
Sbjct: 469 ctcgcggaagtcgaccttgtgcgcgacgccggccttcttgatgacggggaggccgaggtc 410
Query: 644 gtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgc 703
| ||| ||| | ||| ||| ||||| | |||| ||||||| ||||||| ||| |||||
Sbjct: 409 gaagtactccctactgacgtcgatggcgatgatcctgccgtcgtccgggatggccagcgc 350
Query: 704 cgtggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 760
||||| |||| |||| | ||||||||||| || | ||| |||||| ||||||||||
Sbjct: 349 cgtggtcaggacggagcaaccggtgtagacccccacctcgatggtcctcttggcgcc 293
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 869 ctcccgcgggtacacgctcgtgtccaggatgtactggtagaggtcgtcgctcttgag 925
||||||||||||||| |||| | ||| ||||| | ||||||| |||||||||||||
Sbjct: 184 ctcccgcgggtacaccatcgtcttcagcatgtagtcgtagagggcgtcgctcttgag 128
>gb|BF256079.2|BF256079 HVSMEf0008K20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0008K20f, mRNA sequence
Length = 853
Score = 141 bits (71), Expect = 6e-032
Identities = 241/297 (81%), Gaps = 3/297 (1%)
Strand = Plus / Minus
Query: 464 cagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 523
||||||| ||||||||||| || |||||||| ||||||||||||||||||| |||||||
Sbjct: 558 cagcagctgctcgtggtagctgccgtagttgtacttgtcggcgtccacgaaggcgaagtc 499
Query: 524 gaacgacccgtggttcttctcctccgcgatgaggtcgtcgaggacggggagcgcgggacc 583
||| ||| | || || | || |||||||| | |||||||| |||| ||||| ||
Sbjct: 498 gaagctcccctcgtcct---cgtcggcgatgagcttgtcgaggatggggccggcggggcc 442
Query: 584 ctcgcggaagtcgatcttgtgggcgacgccggccttctcgatgcagggcaggcccagctc 643
|||||||||||||| |||||| |||||||||||||||| |||| ||| ||||| || ||
Sbjct: 441 ctcgcggaagtcgaccttgtgcgcgacgccggccttcttgatgacggggaggccgaggtc 382
Query: 644 gtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgc 703
| ||| ||| | ||| ||| ||||| | |||| ||||||| ||||||| ||| |||||
Sbjct: 381 gaagtactccctactgacgtcgatggcgatgatcctgccgtcgtccgggatggccagcgc 322
Query: 704 cgtggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 760
||||| |||| |||| | ||||||||||| || | ||| |||||| ||||||||||
Sbjct: 321 cgtggtcaggacggagcaaccggtgtagacccccacctcgatggtcctcttggcgcc 265
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 869 ctcccgcgggtacacgctcgtgtccaggatgtactggtagaggtcgtcgctcttgag 925
||||||||||||||| |||| | ||| ||||| | ||||||| |||||||||||||
Sbjct: 156 ctcccgcgggtacaccatcgtcttcagcatgtagtcgtagagggcgtcgctcttgag 100
>gb|BF261040.2|BF261040 HVSMEf0023J16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023J16f, mRNA sequence
Length = 802
Score = 141 bits (71), Expect = 6e-032
Identities = 241/297 (81%), Gaps = 3/297 (1%)
Strand = Plus / Minus
Query: 464 cagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 523
||||||| ||||||||||| || |||||||| ||||||||||||||||||| |||||||
Sbjct: 600 cagcagctgctcgtggtagctgccgtagttgtacttgtcggcgtccacgaaggcgaagtc 541
Query: 524 gaacgacccgtggttcttctcctccgcgatgaggtcgtcgaggacggggagcgcgggacc 583
||| ||| | || || | || |||||||| | |||||||| |||| ||||| ||
Sbjct: 540 gaagctcccttcgtcct---cgtcggcgatgagcttgtcgaggatggggccggcggggcc 484
Query: 584 ctcgcggaagtcgatcttgtgggcgacgccggccttctcgatgcagggcaggcccagctc 643
|||||||||||||| |||||| |||||||||||||||| |||| ||| ||||| || ||
Sbjct: 483 ctcgcggaagtcgaccttgtgcgcgacgccggccttcttgatgacggggaggccgaggtc 424
Query: 644 gtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgc 703
| ||| ||| | ||| ||| ||||| | |||| ||||||| ||||||| ||| |||||
Sbjct: 423 gaagtactccctactgacgtcgatggcgatgatcctgccgtcgtccgggatggccagcgc 364
Query: 704 cgtggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 760
||||| |||| |||| | ||||||||||| || | ||| |||||| ||||||||||
Sbjct: 363 cgtggtcaggacggagcaaccggtgtagacccccacctcgatggtcctcttggcgcc 307
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 869 ctcccgcgggtacacgctcgtgtccaggatgtactggtagaggtcgtcgctcttgag 925
||||||||||||||| |||| | ||| ||||| | ||||||| |||||||||||||
Sbjct: 198 ctcccgcgggtacaccatcgtcttcagcatgtagtcgtagagggcgtcgctcttgag 142
>gb|BJ466490.1|BJ466490 BJ466490 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32g18 3', mRNA sequence
Length = 646
Score = 141 bits (71), Expect = 6e-032
Identities = 241/297 (81%), Gaps = 3/297 (1%)
Strand = Plus / Plus
Query: 464 cagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 523
||||||| ||||||||||| || |||||||| ||||||||||||||||||| |||||||
Sbjct: 255 cagcagctgctcgtggtagctgccgtagttgtacttgtcggcgtccacgaaggcgaagtc 314
Query: 524 gaacgacccgtggttcttctcctccgcgatgaggtcgtcgaggacggggagcgcgggacc 583
||| ||| | || || | || |||||||| | |||||||| |||| ||||| ||
Sbjct: 315 gaagctcccctcgtcct---cgtcggcgatgagcttgtcgaggatggggccggcggggcc 371
Query: 584 ctcgcggaagtcgatcttgtgggcgacgccggccttctcgatgcagggcaggcccagctc 643
|||||||||||||| |||||| |||||||||||||||| |||| ||| ||||| || ||
Sbjct: 372 ctcgcggaagtcgaccttgtgcgcgacgccggccttcttgatgacggggaggccgaggtc 431
Query: 644 gtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgc 703
| ||| ||| | ||| ||| ||||| | |||| ||||||| ||||||| ||| |||||
Sbjct: 432 gaagtactccctactgacgtcgatggcgatgatcctgccgtcgtccgggatggccagcgc 491
Query: 704 cgtggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 760
||||| |||| |||| | ||||||||||| || | ||| |||||| ||||||||||
Sbjct: 492 cgtggtcaggacggagcaaccggtgtagacccccacctcgatggtcctcttggcgcc 548
>gb|BQ468365.1|BQ468365 HM01A23T HM Hordeum vulgare subsp. vulgare cDNA clone HM01A23
5-PRIME, mRNA sequence
Length = 666
Score = 141 bits (71), Expect = 6e-032
Identities = 241/297 (81%), Gaps = 3/297 (1%)
Strand = Plus / Minus
Query: 464 cagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 523
||||||| ||||||||||| || |||||||| ||||||||||||||||||| |||||||
Sbjct: 641 cagcagctgctcgtggtagctgccgtagttgtacttgtcggcgtccacgaaggcgaagtc 582
Query: 524 gaacgacccgtggttcttctcctccgcgatgaggtcgtcgaggacggggagcgcgggacc 583
||| ||| | || || | || |||||||| | |||||||| |||| ||||| ||
Sbjct: 581 gaagctcccctcgtcct---cgtcggcgatgagcttgtcgaggatggggccggcggggcc 525
Query: 584 ctcgcggaagtcgatcttgtgggcgacgccggccttctcgatgcagggcaggcccagctc 643
|||||||||||||| |||||| |||||||||||||||| |||| ||| ||||| || ||
Sbjct: 524 ctcgcggaagtcgaccttgtgcgcgacgccggccttcttgatgacggggaggccgaggtc 465
Query: 644 gtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgc 703
| ||| ||| | ||| ||| ||||| | |||| ||||||| ||||||| ||| |||||
Sbjct: 464 gaagtactccctactgacgtcgatggcgatgatcctgccgtcgtccgggatggccagcgc 405
Query: 704 cgtggcgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 760
||||| |||| |||| | ||||||||||| || | ||| |||||| ||||||||||
Sbjct: 404 cgtggtcaggacggagcaaccggtgtagacccccacctcgatggtcctcttggcgcc 348
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 869 ctcccgcgggtacacgctcgtgtccaggatgtactggtagaggtcgtcgctcttgag 925
||||||||||||||| |||| | ||| ||||| | ||||||| |||||||||||||
Sbjct: 239 ctcccgcgggtacaccatcgtcttcagcatgtagtcgtagagggcgtcgctcttgag 183
>gb|CD663691.1|CD663691 UCRHV18_06bd02_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06bd02, mRNA sequence
Length = 320
Score = 137 bits (69), Expect = 9e-031
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 213 ttcacttggcgcggcggcagagggtgatgccgtcgccgacggggagctggcagatctcca 272
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgag 346
|||| | |||||||||||| |||||||||||| ||||
Sbjct: 273 cgcgctggtcggcggcgagggccttgttgaggtcgag 309
>gb|BU977317.1|BU977317 HA11D12r HA Hordeum vulgare subsp. vulgare cDNA clone HA11D12
5-PRIME, mRNA sequence
Length = 632
Score = 133 bits (67), Expect = 1e-029
Identities = 234/289 (80%), Gaps = 3/289 (1%)
Strand = Plus / Minus
Query: 472 gctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacgacc 531
||||||||||| || |||||||| ||||||||||||||||||| |||||||||| ||
Sbjct: 630 gctcgtggtagctgccgtagttgtacttgtcggcgtccacgaaggcgaagtcgaagctcc 571
Query: 532 cgtggttcttctcctccgcgatgaggtcgtcgaggacggggagcgcgggaccctcgcgga 591
| | || || | || |||||||| | |||||||| |||| ||||| ||||||||||
Sbjct: 570 cctcgtcct---cgtcggcgatgagcttgtcgaggatggggccggcggggccctcgcgga 514
Query: 592 agtcgatcttgtgggcgacgccggccttctcgatgcagggcaggcccagctcgtagttct 651
|||||| |||||| |||||||||||||||| |||| ||| ||||| || ||| ||| ||
Sbjct: 513 agtcgaccttgtgcgcgacgccggccttcttgatgacggggaggccgaggtcgaagtact 454
Query: 652 cgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgccgtggcga 711
| | ||| ||| ||||| | |||| ||||||| ||||||| ||| |||||||||| |
Sbjct: 453 ccctactgacgtcgatggcgatgatcctgccgtcgtccgggatggccagcgccgtggtca 394
Query: 712 ggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 760
||| |||| | ||||||||||| || | ||| |||||| ||||||||||
Sbjct: 393 ggacggagcaaccggtgtagacccccacctcgatggtcctcttggcgcc 345
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 869 ctcccgcgggtacacgctcgtgtccaggatgtactggtagaggtcgtcgctcttgag 925
||||||||||||||| |||| | ||| ||||| | ||||||| |||||||||||||
Sbjct: 236 ctcccgcgggtacaccatcgtcttcagcatgtagtcgtagagggcgtcgctcttgag 180
>gb|CA025276.1|CA025276 HZ51K20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51K20
5-PRIME, mRNA sequence
Length = 635
Score = 133 bits (67), Expect = 1e-029
Identities = 234/289 (80%), Gaps = 3/289 (1%)
Strand = Plus / Minus
Query: 472 gctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaacgacc 531
||||||||||| || |||||||| ||||||||||||||||||| |||||||||| ||
Sbjct: 633 gctcgtggtagctgccgtagttgtacttgtcggcgtccacgaaggcgaagtcgaagctcc 574
Query: 532 cgtggttcttctcctccgcgatgaggtcgtcgaggacggggagcgcgggaccctcgcgga 591
| | || || | || |||||||| | |||||||| |||| ||||| ||||||||||
Sbjct: 573 cctcgtcct---cgtcggcgatgagcttgtcgaggatggggccggcggggccctcgcgga 517
Query: 592 agtcgatcttgtgggcgacgccggccttctcgatgcagggcaggcccagctcgtagttct 651
|||||| |||||| |||||||||||||||| |||| ||| ||||| || ||| ||| ||
Sbjct: 516 agtcgaccttgtgcgcgacgccggccttcttgatgacggggaggccgaggtcgaagtact 457
Query: 652 cgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgccgtggcga 711
| | ||| ||| ||||| | |||| ||||||| ||||||| ||| |||||||||| |
Sbjct: 456 ccctactgacgtcgatggcgatgatcctgccgtcgtccgggatggccagcgccgtggtca 397
Query: 712 ggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 760
||| |||| | ||||||||||| || | ||| |||||| ||||||||||
Sbjct: 396 ggacggagcaaccggtgtagacccccacctcgatggtcctcttggcgcc 348
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 869 ctcccgcgggtacacgctcgtgtccaggatgtactggtagaggtcgtcgctcttgag 925
||||||||||||||| |||| | ||| ||||| | ||||||| |||||||||||||
Sbjct: 239 ctcccgcgggtacaccatcgtcttcagcatgtagtcgtagagggcgtcgctcttgag 183
>gb|BQ756877.1|BQ756877 EBem09_SQ005_A16_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_A16 5', mRNA sequence
Length = 97
Score = 129 bits (65), Expect = 2e-028
Identities = 89/97 (91%)
Strand = Plus / Minus
Query: 350 gaagtcgcggtagaagcggatgtacttgcgcatgggcgcgtcgtcggggagcacgacgga 409
||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||||||||
Sbjct: 97 gaagtcgcggtagtagcggatgtacttgcaaatgggggcgtcggcggggagcacgacgga 38
Query: 410 gccgttccacagcgtgttgtcgtagccgatgaggccg 446
||||||||| || |||||||||||||||| |||||||
Sbjct: 37 gccgttccatagggtgttgtcgtagccgaggaggccg 1
>gb|BF260414.3|BF260414 HVSMEf0021O22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021O22f, mRNA sequence
Length = 650
Score = 127 bits (64), Expect = 8e-028
Identities = 219/270 (81%), Gaps = 3/270 (1%)
Strand = Plus / Minus
Query: 464 cagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 523
||||||| ||||||||||| || |||||||| ||||||||||||||||||| |||||||
Sbjct: 268 cagcagctgctcgtggtagctgccgtagttgtacttgtcggcgtccacgaaggcgaagtc 209
Query: 524 gaacgacccgtggttcttctcctccgcgatgaggtcgtcgaggacggggagcgcgggacc 583
||| ||| | || || | || |||||||| | |||||||| |||| ||||| ||
Sbjct: 208 gaagctcccctcgtcct---cgtcggcgatgagcttgtcgaggatggggccggcggggcc 152
Query: 584 ctcgcggaagtcgatcttgtgggcgacgccggccttctcgatgcagggcaggcccagctc 643
|||||||||||||| |||||| |||||||||||||||| |||| ||| ||||| || ||
Sbjct: 151 ctcgcggaagtcgaccttgtgcgcgacgccggccttcttgatgacggggaggccgaggtc 92
Query: 644 gtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgc 703
| ||| ||| | ||| ||| ||||| | |||| ||||||| ||||||| ||| |||||
Sbjct: 91 gaagtactccctactgacgtcgatggcgatgatcctgccgtcgtccgggatggccagcgc 32
Query: 704 cgtggcgaggagggagtagccggtgtagac 733
||||| |||| |||| | |||||||||||
Sbjct: 31 cgtggtcaggacggagcaaccggtgtagac 2
>gb|BG415448.2|BG415448 HVSMEk0006I14f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0006I14f, mRNA sequence
Length = 634
Score = 117 bits (59), Expect = 8e-025
Identities = 199/245 (81%), Gaps = 3/245 (1%)
Strand = Plus / Minus
Query: 464 cagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 523
||||||| ||||||||||| || |||||||| ||||||||||||||||||| |||||||
Sbjct: 244 cagcagctgctcgtggtagctgccgtagttgtacttgtcggcgtccacgaaggcgaagtc 185
Query: 524 gaacgacccgtggttcttctcctccgcgatgaggtcgtcgaggacggggagcgcgggacc 583
||| ||| | || || | || |||||||| | |||||||| |||| ||||| ||
Sbjct: 184 gaagctcccctcgtcct---cgtcggcgatgagcttgtcgaggatggggccggcggggcc 128
Query: 584 ctcgcggaagtcgatcttgtgggcgacgccggccttctcgatgcagggcaggcccagctc 643
|||||||||||||| |||||| |||||||||||||||| |||| ||| ||||| || ||
Sbjct: 127 ctcgcggaagtcgaccttgtgcgcgacgccggccttcttgatgacggggaggccgaggtc 68
Query: 644 gtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgc 703
| ||| ||| | ||| ||| ||||| | |||| ||||||| ||||||| ||| |||||
Sbjct: 67 gaagtactccctactgacgtcgatggcgatgatcctgccgtcgtccgggatggccagcgc 8
Query: 704 cgtgg 708
|||||
Sbjct: 7 cgtgg 3
>gb|CA017209.1|CA017209 HV14G11u HV Hordeum vulgare subsp. vulgare cDNA clone HV14G11
3-PRIME, mRNA sequence
Length = 552
Score = 117 bits (59), Expect = 8e-025
Identities = 199/245 (81%), Gaps = 3/245 (1%)
Strand = Plus / Plus
Query: 464 cagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 523
||||||| ||||||||||| || |||||||| ||||||||||||||||||| |||||||
Sbjct: 300 cagcagctgctcgtggtagctgccgtagttgtacttgtcggcgtccacgaaggcgaagtc 359
Query: 524 gaacgacccgtggttcttctcctccgcgatgaggtcgtcgaggacggggagcgcgggacc 583
||| ||| | || || | || |||||||| | |||||||| |||| ||||| ||
Sbjct: 360 gaagctcccctcgtcct---cgtcggcgatgagcttgtcgaggatggggccggcggggcc 416
Query: 584 ctcgcggaagtcgatcttgtgggcgacgccggccttctcgatgcagggcaggcccagctc 643
|||||||||||||| |||||| |||||||||||||||| |||| ||| ||||| || ||
Sbjct: 417 ctcgcggaagtcgaccttgtgcgcgacgccggccttcttgatgacggggaggccgaggtc 476
Query: 644 gtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagggcgagcgc 703
| ||| ||| | ||| ||| ||||| | |||| ||||||| ||||||| ||| |||||
Sbjct: 477 gaagtactccctactgacgtcgatggcgatgatcctgccgtcgtccgggatggccagcgc 536
Query: 704 cgtgg 708
|||||
Sbjct: 537 cgtgg 541
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 230,609
Number of Sequences: 312970
Number of extensions: 230609
Number of successful extensions: 76318
Number of sequences better than 0.5: 219
Number of HSP's better than 0.5 without gapping: 218
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 75716
Number of HSP's gapped (non-prelim): 564
length of query: 1115
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1096
effective length of database: 169,188,109
effective search space: 185430167464
effective search space used: 185430167464
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)