BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455878.2.1
(1327 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL505623.1|AL505623 AL505623 Hordeum vulgare Barke roots... 147 1e-033
gb|BF260650.2|BF260650 HVSMEf0022J06f Hordeum vulgare seedl... 147 1e-033
gb|BF259091.3|BF259091 HVSMEf0017K20f Hordeum vulgare seedl... 147 1e-033
gb|AV916428.1|AV916428 AV916428 K. Sato unpublished cDNA li... 147 1e-033
gb|BJ465100.1|BJ465100 BJ465100 K. Sato unpublished cDNA li... 147 1e-033
gb|BJ465101.1|BJ465101 BJ465101 K. Sato unpublished cDNA li... 147 1e-033
gb|BQ467978.1|BQ467978 HR01I14r HR Hordeum vulgare subsp. v... 147 1e-033
gb|AL503406.1|AL503406 AL503406 Hordeum vulgare Barke roots... 135 4e-030
gb|AL504019.1|AL504019 AL504019 Hordeum vulgare Barke roots... 129 3e-028
gb|AL505788.1|AL505788 AL505788 Hordeum vulgare Barke roots... 129 3e-028
gb|BF258896.1|BF258896 HVSMEf0016P14f Hordeum vulgare seedl... 127 1e-027
gb|BG300069.1|BG300069 HVSMEb0011D24f Hordeum vulgare seedl... 127 1e-027
gb|BF253855.2|BF253855 HVSMEf0002E24f Hordeum vulgare seedl... 127 1e-027
gb|BF254088.2|BF254088 HVSMEf0002P22f Hordeum vulgare seedl... 127 1e-027
gb|BF257879.2|BF257879 HVSMEf0014B23f Hordeum vulgare seedl... 127 1e-027
gb|BF258596.2|BF258596 HVSMEf0016C17f Hordeum vulgare seedl... 127 1e-027
gb|BF256951.3|BF256951 HVSMEf0011H09f Hordeum vulgare seedl... 127 1e-027
gb|AV924443.1|AV924443 AV924443 K. Sato unpublished cDNA li... 127 1e-027
gb|BJ464128.1|BJ464128 BJ464128 K. Sato unpublished cDNA li... 127 1e-027
gb|AL504052.1|AL504052 AL504052 Hordeum vulgare Barke roots... 125 4e-027
gb|BF626066.2|BF626066 HVSMEa0015J06f Hordeum vulgare seedl... 115 4e-024
gb|BF618543.2|BF618543 HVSMEc0006A01f Hordeum vulgare seedl... 113 2e-023
gb|BQ765347.1|BQ765347 EBro03_SQ006_M19_R root, 3 week, wat... 111 6e-023
gb|BF255254.2|BF255254 HVSMEf0006F22f Hordeum vulgare seedl... 109 2e-022
gb|BF626135.2|BF626135 HVSMEa0015P20f Hordeum vulgare seedl... 107 9e-022
gb|BF257563.2|BF257563 HVSMEf0013E02f Hordeum vulgare seedl... 107 9e-022
gb|BF260366.2|BF260366 HVSMEf0021M22f Hordeum vulgare seedl... 107 9e-022
gb|BF260804.2|BF260804 HVSMEf0022P20f Hordeum vulgare seedl... 107 9e-022
gb|BF629846.2|BF629846 HVSMEb0007B06f Hordeum vulgare seedl... 105 4e-021
gb|AV913622.1|AV913622 AV913622 K. Sato unpublished cDNA li... 105 4e-021
gb|AV913744.1|AV913744 AV913744 K. Sato unpublished cDNA li... 105 4e-021
gb|AV916549.1|AV916549 AV916549 K. Sato unpublished cDNA li... 105 4e-021
gb|BJ464939.1|BJ464939 BJ464939 K. Sato unpublished cDNA li... 105 4e-021
gb|BJ465166.1|BJ465166 BJ465166 K. Sato unpublished cDNA li... 105 4e-021
gb|AL504860.1|AL504860 AL504860 Hordeum vulgare Barke roots... 100 2e-019
gb|BF261193.2|BF261193 HVSMEf0011F03f Hordeum vulgare seedl... 100 2e-019
gb|BF628014.2|BF628014 HVSMEb0002J23f Hordeum vulgare seedl... 98 9e-019
gb|BF260927.2|BF260927 HVSMEf0023E23f Hordeum vulgare seedl... 94 1e-017
gb|BF257368.2|BF257368 HVSMEf0012L06f Hordeum vulgare seedl... 84 1e-014
gb|BF257748.2|BF257748 HVSMEf0013M04f Hordeum vulgare seedl... 84 1e-014
gb|BF260349.2|BF260349 HVSMEf0021M05f Hordeum vulgare seedl... 84 1e-014
gb|BF259024.3|BF259024 HVSMEf0017H01f Hordeum vulgare seedl... 84 1e-014
gb|CB882435.1|CB882435 HL01N17w HL Hordeum vulgare subsp. v... 84 1e-014
gb|BF629787.2|BF629787 HVSMEb0013N01f Hordeum vulgare seedl... 82 5e-014
gb|BG310376.1|BG310376 HVSMEc0018B10f Hordeum vulgare seedl... 82 5e-014
gb|BF258909.2|BF258909 HVSMEf0017A08f Hordeum vulgare seedl... 82 5e-014
gb|BF260951.2|BF260951 HVSMEf0023F23f Hordeum vulgare seedl... 76 3e-012
gb|BF260237.3|BF260237 HVSMEf0021H13f Hordeum vulgare seedl... 70 2e-010
gb|AV926277.1|AV926277 AV926277 K. Sato unpublished cDNA li... 66 3e-009
gb|BQ765268.1|BQ765268 EBro03_SQ006_N17_R root, 3 week, wat... 66 3e-009
gb|AL504343.1|AL504343 AL504343 Hordeum vulgare Barke roots... 64 1e-008
gb|AL504415.1|AL504415 AL504415 Hordeum vulgare Barke roots... 64 1e-008
gb|BF631324.2|BF631324 HVSMEb0015J20f Hordeum vulgare seedl... 64 1e-008
gb|BF253643.2|BF253643 HVSMEf0001L12f Hordeum vulgare seedl... 64 1e-008
gb|BF254372.2|BF254372 HVSMEf0003M21f Hordeum vulgare seedl... 64 1e-008
gb|BF254378.2|BF254378 HVSMEf0003N03f Hordeum vulgare seedl... 64 1e-008
gb|BF255022.2|BF255022 HVSMEf0005K23f Hordeum vulgare seedl... 64 1e-008
gb|BF256773.2|BF256773 HVSMEf0010P15f Hordeum vulgare seedl... 64 1e-008
gb|BF259028.2|BF259028 HVSMEf0017H05f Hordeum vulgare seedl... 64 1e-008
gb|BF260521.2|BF260521 HVSMEf0022D17f Hordeum vulgare seedl... 64 1e-008
gb|BF255884.2|BF255884 HVSMEf0008B14f Hordeum vulgare seedl... 64 1e-008
gb|BF258405.3|BF258405 HVSMEf0015K05f Hordeum vulgare seedl... 64 1e-008
gb|AV924347.1|AV924347 AV924347 K. Sato unpublished cDNA li... 64 1e-008
gb|AV925792.1|AV925792 AV925792 K. Sato unpublished cDNA li... 64 1e-008
gb|AV931161.1|AV931161 AV931161 K. Sato unpublished cDNA li... 64 1e-008
gb|BJ468872.1|BJ468872 BJ468872 K. Sato unpublished cDNA li... 64 1e-008
gb|BI956453.1|BI956453 HVSMEn0003H10f Hordeum vulgare rachi... 60 2e-007
gb|BF253494.2|BF253494 HVSMEf0001B12f Hordeum vulgare seedl... 56 3e-006
gb|BF259978.2|BF259978 HVSMEf0020M11f Hordeum vulgare seedl... 56 3e-006
gb|BE411136.1|BE411136 ISC002.D10F990601 ITEC ISC Barley Le... 54 1e-005
gb|AL500356.1|AL500356 AL500356 Hordeum vulgare Barke etiol... 54 1e-005
gb|BF254051.2|BF254051 HVSMEf0002N23f Hordeum vulgare seedl... 54 1e-005
gb|AV927324.1|AV927324 AV927324 K. Sato unpublished cDNA li... 54 1e-005
gb|AV927543.1|AV927543 AV927543 K. Sato unpublished cDNA li... 54 1e-005
gb|AV928022.1|AV928022 AV928022 K. Sato unpublished cDNA li... 54 1e-005
gb|AV930320.1|AV930320 AV930320 K. Sato unpublished cDNA li... 54 1e-005
gb|AV930495.1|AV930495 AV930495 K. Sato unpublished cDNA li... 54 1e-005
gb|AV930527.1|AV930527 AV930527 K. Sato unpublished cDNA li... 54 1e-005
gb|AV931170.1|AV931170 AV931170 K. Sato unpublished cDNA li... 54 1e-005
gb|AV931697.1|AV931697 AV931697 K. Sato unpublished cDNA li... 54 1e-005
gb|AV931831.1|AV931831 AV931831 K. Sato unpublished cDNA li... 54 1e-005
gb|CB877665.1|CB877665 HP05M02T HP Hordeum vulgare subsp. v... 54 1e-005
gb|CB879889.1|CB879889 HP07G10T HP Hordeum vulgare subsp. v... 54 1e-005
gb|CD662211.1|CD662211 UCRHV18_01af07_b1 Drought-stressed D... 54 1e-005
gb|CD662527.1|CD662527 UCRHV18_02ba04_b1 Drought-stressed D... 54 1e-005
gb|CD663190.1|CD663190 UCRHV18_04cf12_b1 Drought-stressed D... 54 1e-005
gb|AL504425.1|AL504425 AL504425 Hordeum vulgare Barke roots... 52 5e-005
gb|BG300362.1|BG300362 HVSMEb0016B12f Hordeum vulgare seedl... 52 5e-005
gb|AV918157.1|AV918157 AV918157 K. Sato unpublished cDNA li... 52 5e-005
gb|AV920613.1|AV920613 AV920613 K. Sato unpublished cDNA li... 52 5e-005
gb|AV929534.1|AV929534 AV929534 K. Sato unpublished cDNA li... 52 5e-005
gb|BJ466406.1|BJ466406 BJ466406 K. Sato unpublished cDNA li... 52 5e-005
gb|BI777619.2|BI777619 EBro08_SQ001_A05_R root, 3 week, dro... 52 5e-005
gb|BQ768678.1|BQ768678 EBro08_SQ012_J09_R root, 3 week, dro... 52 5e-005
gb|AL450982.1|AL450982 AL450982 Hordeum vulgare Barke etiol... 50 2e-004
gb|BF257415.2|BF257415 HVSMEf0012N14f Hordeum vulgare seedl... 50 2e-004
gb|BF620538.3|BF620538 HVSMEc0020C24f Hordeum vulgare seedl... 50 2e-004
gb|AV925298.1|AV925298 AV925298 K. Sato unpublished cDNA li... 50 2e-004
gb|AV928023.1|AV928023 AV928023 K. Sato unpublished cDNA li... 50 2e-004
gb|BM097449.2|BM097449 EBro05_SQ003_F12_R root, 3 week, red... 50 2e-004
gb|CB876850.1|CB876850 HP02J21T HP Hordeum vulgare subsp. v... 50 2e-004
gb|AL500294.1|AL500294 AL500294 Hordeum vulgare Barke etiol... 48 7e-004
gb|AV930452.1|AV930452 AV930452 K. Sato unpublished cDNA li... 48 7e-004
gb|BM817346.1|BM817346 HC111F01_T3.ab1 HC Hordeum vulgare s... 48 7e-004
gb|BJ463887.1|BJ463887 BJ463887 K. Sato unpublished cDNA li... 48 7e-004
gb|BM097463.2|BM097463 EBro05_SQ003_I07_R root, 3 week, red... 48 7e-004
gb|CB879923.1|CB879923 HP11I08T HP Hordeum vulgare subsp. v... 48 7e-004
gb|CD662288.1|CD662288 UCRHV18_01aa10_b1 Drought-stressed D... 48 7e-004
gb|CD662275.1|CD662275 UCRHV18_01be09_b1 Drought-stressed D... 48 7e-004
gb|CD662440.1|CD662440 UCRHV18_01cb06_b1 Drought-stressed D... 48 7e-004
gb|CD662493.1|CD662493 UCRHV18_01ch06_b1 Drought-stressed D... 48 7e-004
gb|CD663159.1|CD663159 UCRHV18_04cc06_b1 Drought-stressed D... 48 7e-004
gb|CD663459.1|CD663459 UCRHV18_05cc01_b1 Drought-stressed D... 48 7e-004
gb|CD663812.1|CD663812 UCRHV18_06ch08_b1 Drought-stressed D... 48 7e-004
gb|CD663850.1|CD663850 UCRHV18_06dd11_b1 Drought-stressed D... 48 7e-004
gb|CD663904.1|CD663904 UCRHV18_07ab10_b1 Drought-stressed D... 48 7e-004
gb|AV836790.1|AV836790 AV836790 K. Sato unpublished cDNA li... 46 0.003
gb|AV915515.1|AV915515 AV915515 K. Sato unpublished cDNA li... 46 0.003
gb|BM817329.1|BM817329 HC105E06_T3.ab1 HC Hordeum vulgare s... 46 0.003
gb|BQ294531.1|BQ294531 LP10296 Lemma/palea-enriched cDNA li... 46 0.003
gb|AL499854.1|AL499854 AL499854 Hordeum vulgare Barke etiol... 44 0.012
gb|AL500730.1|AL500730 AL500730 Hordeum vulgare Barke roots... 44 0.012
gb|AL500735.1|AL500735 AL500735 Hordeum vulgare Barke roots... 44 0.012
gb|AL501157.1|AL501157 AL501157 Hordeum vulgare Barke roots... 44 0.012
gb|AL501306.1|AL501306 AL501306 Hordeum vulgare Barke roots... 44 0.012
gb|AL501392.1|AL501392 AL501392 Hordeum vulgare Barke roots... 44 0.012
gb|AL502790.1|AL502790 AL502790 Hordeum vulgare Barke roots... 44 0.012
gb|AL502883.1|AL502883 AL502883 Hordeum vulgare Barke roots... 44 0.012
gb|AL503041.1|AL503041 AL503041 Hordeum vulgare Barke roots... 44 0.012
gb|AL503073.1|AL503073 AL503073 Hordeum vulgare Barke roots... 44 0.012
gb|AL503161.1|AL503161 AL503161 Hordeum vulgare Barke roots... 44 0.012
gb|AL503330.1|AL503330 AL503330 Hordeum vulgare Barke roots... 44 0.012
gb|AL503613.1|AL503613 AL503613 Hordeum vulgare Barke roots... 44 0.012
gb|AL503735.1|AL503735 AL503735 Hordeum vulgare Barke roots... 44 0.012
gb|BF624433.3|BF624433 HVSMEa0016B18f Hordeum vulgare seedl... 44 0.012
gb|BF254577.2|BF254577 HVSMEf0004G15f Hordeum vulgare seedl... 44 0.012
gb|BF256832.2|BF256832 HVSMEf0011C05f Hordeum vulgare seedl... 44 0.012
gb|BF257975.2|BF257975 HVSMEf0014G07f Hordeum vulgare seedl... 44 0.012
gb|BF259348.2|BF259348 HVSMEf0019F16f Hordeum vulgare seedl... 44 0.012
gb|BF260928.2|BF260928 HVSMEf0023E24f Hordeum vulgare seedl... 44 0.012
gb|BF256054.2|BF256054 HVSMEf0008J16f Hordeum vulgare seedl... 44 0.012
gb|BF253693.3|BF253693 HVSMEf0001N20f Hordeum vulgare seedl... 44 0.012
gb|BF259414.3|BF259414 HVSMEf0019A18f Hordeum vulgare seedl... 44 0.012
gb|AV915283.1|AV915283 AV915283 K. Sato unpublished cDNA li... 44 0.012
gb|AV916317.1|AV916317 AV916317 K. Sato unpublished cDNA li... 44 0.012
gb|AV917949.1|AV917949 AV917949 K. Sato unpublished cDNA li... 44 0.012
gb|AV918876.1|AV918876 AV918876 K. Sato unpublished cDNA li... 44 0.012
gb|AV921748.1|AV921748 AV921748 K. Sato unpublished cDNA li... 44 0.012
gb|BJ462654.1|BJ462654 BJ462654 K. Sato unpublished cDNA li... 44 0.012
gb|BJ463550.1|BJ463550 BJ463550 K. Sato unpublished cDNA li... 44 0.012
gb|BJ467760.1|BJ467760 BJ467760 K. Sato unpublished cDNA li... 44 0.012
gb|BJ467944.1|BJ467944 BJ467944 K. Sato unpublished cDNA li... 44 0.012
gb|BJ468231.1|BJ468231 BJ468231 K. Sato unpublished cDNA li... 44 0.012
gb|BJ468232.1|BJ468232 BJ468232 K. Sato unpublished cDNA li... 44 0.012
gb|BQ461064.1|BQ461064 HE01F07r HE Hordeum vulgare subsp. v... 44 0.012
gb|BQ662094.1|BQ662094 HR01I14u HR Hordeum vulgare subsp. v... 44 0.012
gb|BQ662115.1|BQ662115 HR01K01u HR Hordeum vulgare subsp. v... 44 0.012
gb|BI778623.2|BI778623 EBro07_SQ003_N10_R root, 3 week, red... 44 0.012
gb|BQ765323.1|BQ765323 EBro03_SQ006_H23_R root, 3 week, wat... 44 0.012
gb|AL500420.1|AL500420 AL500420 Hordeum vulgare Barke etiol... 42 0.046
gb|CB879142.1|CB879142 HP11B09T HP Hordeum vulgare subsp. v... 42 0.046
gb|CB879386.1|CB879386 HP02A07w HP Hordeum vulgare subsp. v... 42 0.046
gb|CB879533.1|CB879533 HP02J21w HP Hordeum vulgare subsp. v... 42 0.046
gb|CV060228.1|CV060228 BNEL55g8 Barley EST endosperm librar... 42 0.046
gb|BF256472.2|BF256472 HVSMEf0010B05f Hordeum vulgare seedl... 40 0.18
gb|AV913573.1|AV913573 AV913573 K. Sato unpublished cDNA li... 40 0.18
gb|AV917258.1|AV917258 AV917258 K. Sato unpublished cDNA li... 40 0.18
gb|AV922427.1|AV922427 AV922427 K. Sato unpublished cDNA li... 40 0.18
gb|AV929940.1|AV929940 AV929940 K. Sato unpublished cDNA li... 40 0.18
>gb|AL505623.1|AL505623 AL505623 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09A12V 5', mRNA sequence
Length = 468
Score = 147 bits (74), Expect = 1e-033
Identities = 146/170 (85%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 82 gttcccgcggacgctgagctgctgcaggcacaggcagacctgtggcgccacagcctctac 141
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| | |||||||||||| |||||| || |||||| | |||||||| || ||||||
Sbjct: 142 tacctctcctccatggcgctccggtgcgccgtcgagctcgagatcccgactgcgatccac 201
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccct 225
|||||||||| ||| ||||||| ||||| ||||||||||||||||
Sbjct: 202 cgcctaggcggggtcgcctcgctgcccgacctgatggccgcgctgtccct 251
>gb|BF260650.2|BF260650 HVSMEf0022J06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022J06f, mRNA sequence
Length = 727
Score = 147 bits (74), Expect = 1e-033
Identities = 146/170 (85%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 21 gttcccgcggacgctgagctgctgcaggcacaggcagacctgtggcgccacagcctctac 80
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| | |||||||||||| |||||| || |||||| | |||||||| || ||||||
Sbjct: 81 tacctctcctccatggcgctccggtgcgccgtcgagctcgagatcccgactgcgatccac 140
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccct 225
|||||||||| ||| ||||||| ||||| ||||||||||||||||
Sbjct: 141 cgcctaggcggggtcgcctcgctgcctgacctgatggccgcgctgtccct 190
>gb|BF259091.3|BF259091 HVSMEf0017K20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0017K20f, mRNA sequence
Length = 796
Score = 147 bits (74), Expect = 1e-033
Identities = 146/170 (85%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 73 gttcccgcggacgctgagctgctgcaggcacaggcagacctgtggcgccacagcctctac 132
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| | |||||||||||| |||||| || |||||| | |||||||| || ||||||
Sbjct: 133 tacctctcctccatggcgctccggtgcgccgtcgagctcgagatcccgactgcgatccac 192
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccct 225
|||||||||| ||| ||||||| ||||| ||||||||||||||||
Sbjct: 193 cgcctaggcggggtcgcctcgctgcctgacctgatggccgcgctgtccct 242
>gb|AV916428.1|AV916428 AV916428 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17c24 5', mRNA sequence
Length = 581
Score = 147 bits (74), Expect = 1e-033
Identities = 146/170 (85%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 73 gttcccgcggacgctgagctgctgcaggcacaggcagacctgtggcgccacagcctctac 132
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| | |||||||||||| |||||| || |||||| | |||||||| || ||||||
Sbjct: 133 tacctctcctccatggcgctccggtgcgccgtcgagctcgagatcccgactgcgatccac 192
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccct 225
|||||||||| ||| ||||||| ||||| ||||||||||||||||
Sbjct: 193 cgcctaggcggggtcgcctcgctgcccgacctgatggccgcgctgtccct 242
>gb|BJ465100.1|BJ465100 BJ465100 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m03 5', mRNA sequence
Length = 577
Score = 147 bits (74), Expect = 1e-033
Identities = 146/170 (85%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 73 gttcccgcggacgctgagctgctgcaggcacaggcagacctgtggcgccacagcctctac 132
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| | |||||||||||| |||||| || |||||| | |||||||| || ||||||
Sbjct: 133 tacctctcctccatggcgctccggtgcgccgtcgagctcgagatcccgactgcgatccac 192
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccct 225
|||||||||| ||| ||||||| ||||| ||||||||||||||||
Sbjct: 193 cgcctaggcggggtcgcctcgctgcccgacctgatggccgcgctgtccct 242
>gb|BJ465101.1|BJ465101 BJ465101 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m04 5', mRNA sequence
Length = 590
Score = 147 bits (74), Expect = 1e-033
Identities = 146/170 (85%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 74 gttcccgcggacgctgagctgctgcaggcacaggcagacctgtggcgccacagcctctac 133
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| | |||||||||||| |||||| || |||||| | |||||||| || ||||||
Sbjct: 134 tacctctcctccatggcgctccggtgcgccgtcgagctcgagatcccgactgcgatccac 193
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccct 225
|||||||||| ||| ||||||| ||||| ||||||||||||||||
Sbjct: 194 cgcctaggcggggtcgcctcgctgcccgacctgatggccgcgctgtccct 243
>gb|BQ467978.1|BQ467978 HR01I14r HR Hordeum vulgare subsp. vulgare cDNA clone HR01I14
5-PRIME, mRNA sequence
Length = 490
Score = 147 bits (74), Expect = 1e-033
Identities = 146/170 (85%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 91 gttcccgcggacgctgagctgctgcaggcacaggcagacctgtggcgccacagcctctac 150
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| | |||||||||||| |||||| || |||||| | |||||||| || ||||||
Sbjct: 151 tacctctcctccatggcgctccggtgcgccgtcgagctcgagatcccgactgcgatccac 210
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccct 225
|||||||||| ||| ||||||| ||||| ||||||||||||||||
Sbjct: 211 cgcctaggcggggtcgcctcgctgcccgacctgatggccgcgctgtccct 260
>gb|AL503406.1|AL503406 AL503406 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02A11T 5', mRNA sequence
Length = 653
Score = 135 bits (68), Expect = 4e-030
Identities = 194/236 (82%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
||||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||||||
Sbjct: 102 gttcccacggatgccgagctgctgcaggctcaggctgacctgtggcgccacaccctctac 161
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| || ||||||| |||| ||||| || ||||| ||||||||| || || |||
Sbjct: 162 tacctcacgtccatggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcac 221
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggcc 235
||||| |||||| || ||||||| ||||| | ||||||||||||| | || || |
Sbjct: 222 aacctcggcggggtcacctcgctgcccgacctggcggccgcgctgtccatcccggcaagc 281
Query: 236 aagctcccgttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
||| ||||||||||| ||| ||||||| ||||||||| ||||||||||||||
Sbjct: 282 aaggagccgttcctcggccgcctgatgcgtgcgctggtcacctcgggcgtcttcgc 337
>gb|AL504019.1|AL504019 AL504019 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01K17V 5', mRNA sequence
Length = 591
Score = 129 bits (65), Expect = 3e-028
Identities = 193/236 (81%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
||||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||||||
Sbjct: 87 gttcccacggatgccgagctgctgcaggctcaggctgacctgtggcgccacaccctctac 146
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| || ||||||| |||| ||||| || ||||| ||||||||| | || |||
Sbjct: 147 tacctcacgtccatggggctccgctgcgccgtcaagctcggcatcccgacggngatgcac 206
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggcc 235
||||| |||||| || ||||||| ||||| | ||||||||||||| | || || |
Sbjct: 207 aacctcggcggggtcacctcgctgcccgacctggcggccgcgctgtccatcccggcaagc 266
Query: 236 aagctcccgttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
||| ||||||||||| ||| ||||||| ||||||||| ||||||||||||||
Sbjct: 267 aaggagccgttcctcggccgcctgatgcgtgcgctggtcacctcgggcgtcttcgc 322
>gb|AL505788.1|AL505788 AL505788 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09I12V 5', mRNA sequence
Length = 469
Score = 129 bits (65), Expect = 3e-028
Identities = 193/236 (81%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
||||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||||||
Sbjct: 104 gttcccacggatgccgagctgctgcaggctcaggctgacctgtggcgccacaccctctac 163
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| || ||||||| |||| ||||| || ||||| ||||||||| || || |||
Sbjct: 164 tacctcacgtccatggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcac 223
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggcc 235
||||| |||||| || ||||||| ||||| | ||||||||||||| | || || |
Sbjct: 224 aacctcggcggggtcacctcgctgcccgacctggcggccgcgctgtccatcccggcaagc 283
Query: 236 aagctcccgttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
||| ||||||||||| ||| |||||| ||||||||| ||||||||||||||
Sbjct: 284 aaggagccgttcctcggccgcctgatgcntgcgctggtcacctcgggcgtcttcgc 339
>gb|BF258896.1|BF258896 HVSMEf0016P14f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016P14f, mRNA sequence
Length = 597
Score = 127 bits (64), Expect = 1e-027
Identities = 193/236 (81%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| || ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 89 gttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctctac 148
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| || ||||||| |||| ||||| || ||||| ||||||||| || || |||
Sbjct: 149 tacctcacgtccatggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcac 208
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggcc 235
||||| |||||| || ||||||| ||||| | ||||| ||||||| | || || |
Sbjct: 209 aacctcggcggggtcacctcgctgcccgacctggcggccgtgctgtccatcccggcaagc 268
Query: 236 aagctcccgttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||| ||||||||||| ||| ||||||| ||||||||| || |||||||||||
Sbjct: 269 aagcagccgttcctcggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgc 324
>gb|BG300069.1|BG300069 HVSMEb0011D24f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0011D24f, mRNA sequence
Length = 536
Score = 127 bits (64), Expect = 1e-027
Identities = 193/236 (81%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| || ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 82 gttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctctac 141
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| || ||||||| |||| ||||| || ||||| ||||||||| || || |||
Sbjct: 142 tacctcacgtccatggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcac 201
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggcc 235
||||| |||||| || ||||||| ||||| | ||||| ||||||| | || || |
Sbjct: 202 aacctcggcggggtcacctcgctgcccgacctggcggccgtgctgtccatcccggcaagc 261
Query: 236 aagctcccgttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||| ||||||||||| ||| ||||||| ||||||||| || |||||||||||
Sbjct: 262 aagcagccgttcctcggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgc 317
>gb|BF253855.2|BF253855 HVSMEf0002E24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002E24f, mRNA sequence
Length = 608
Score = 127 bits (64), Expect = 1e-027
Identities = 193/236 (81%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| || ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 82 gttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctctac 141
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| || ||||||| |||| ||||| || ||||| ||||||||| || || |||
Sbjct: 142 tacctcacgtccatggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcac 201
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggcc 235
||||| |||||| || ||||||| ||||| | ||||| ||||||| | || || |
Sbjct: 202 aacctcggcggggtcacctcgctgcccgacctggcggccgtgctgtccatcccggcaagc 261
Query: 236 aagctcccgttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||| ||||||||||| ||| ||||||| ||||||||| || |||||||||||
Sbjct: 262 aagcagccgttcctcggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgc 317
>gb|BF254088.2|BF254088 HVSMEf0002P22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002P22f, mRNA sequence
Length = 869
Score = 127 bits (64), Expect = 1e-027
Identities = 193/236 (81%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| || ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 87 gttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctctac 146
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| || ||||||| |||| ||||| || ||||| ||||||||| || || |||
Sbjct: 147 tacctcacgtccatggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcac 206
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggcc 235
||||| |||||| || ||||||| ||||| | ||||| ||||||| | || || |
Sbjct: 207 aacctcggcggggtcacctcgctgcccgacctggcggccgtgctgtccatcccggcaagc 266
Query: 236 aagctcccgttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||| ||||||||||| ||| ||||||| ||||||||| || |||||||||||
Sbjct: 267 aagcagccgttcctcggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgc 322
>gb|BF257879.2|BF257879 HVSMEf0014B23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0014B23f, mRNA sequence
Length = 573
Score = 127 bits (64), Expect = 1e-027
Identities = 193/236 (81%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| || ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 70 gttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctctac 129
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| || ||||||| |||| ||||| || ||||| ||||||||| || || |||
Sbjct: 130 tacctcacgtccatggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcac 189
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggcc 235
||||| |||||| || ||||||| ||||| | ||||| ||||||| | || || |
Sbjct: 190 aacctcggcggggtcacctcgctgcccgacctggcggccgtgctgtccatcccggcaagc 249
Query: 236 aagctcccgttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||| ||||||||||| ||| ||||||| ||||||||| || |||||||||||
Sbjct: 250 aagcagccgttcctcggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgc 305
>gb|BF258596.2|BF258596 HVSMEf0016C17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016C17f, mRNA sequence
Length = 580
Score = 127 bits (64), Expect = 1e-027
Identities = 193/236 (81%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| || ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 75 gttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctctac 134
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| || ||||||| |||| ||||| || ||||| ||||||||| || || |||
Sbjct: 135 tacctcacgtccatggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcac 194
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggcc 235
||||| |||||| || ||||||| ||||| | ||||| ||||||| | || || |
Sbjct: 195 aacctcggcggggtcacctcgctgcccgacctggcggccgtgctgtccatcccggcaagc 254
Query: 236 aagctcccgttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||| ||||||||||| ||| ||||||| ||||||||| || |||||||||||
Sbjct: 255 aagcagccgttcctcggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgc 310
>gb|BF256951.3|BF256951 HVSMEf0011H09f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011H09f, mRNA sequence
Length = 819
Score = 127 bits (64), Expect = 1e-027
Identities = 193/236 (81%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| || ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 77 gttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctctac 136
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| || ||||||| |||| ||||| || ||||| ||||||||| || || |||
Sbjct: 137 tacctcacgtccatggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcac 196
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggcc 235
||||| |||||| || ||||||| ||||| | ||||| ||||||| | || || |
Sbjct: 197 aacctcggcggggtcacctcgctgcccgacctggcggccgtgctgtccatcccggcaagc 256
Query: 236 aagctcccgttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||| ||||||||||| ||| ||||||| ||||||||| || |||||||||||
Sbjct: 257 aagcagccgttcctcggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgc 312
>gb|AV924443.1|AV924443 AV924443 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14j15 5', mRNA sequence
Length = 523
Score = 127 bits (64), Expect = 1e-027
Identities = 193/236 (81%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| || ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 39 gttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctctac 98
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| || ||||||| |||| ||||| || ||||| ||||||||| || || |||
Sbjct: 99 tacctcacgtccatggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcac 158
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggcc 235
||||| |||||| || ||||||| ||||| | ||||| ||||||| | || || |
Sbjct: 159 aacctcggcggggtcacctcgctgcccgacctggcggccgtgctgtccatcccggcaagc 218
Query: 236 aagctcccgttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||| ||||||||||| ||| ||||||| ||||||||| || |||||||||||
Sbjct: 219 aagcagccgttcctcggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgc 274
>gb|BJ464128.1|BJ464128 BJ464128 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31p18 5', mRNA sequence
Length = 439
Score = 127 bits (64), Expect = 1e-027
Identities = 193/236 (81%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| || ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 29 gttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctctac 88
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| || ||||||| |||| ||||| || ||||| ||||||||| || || |||
Sbjct: 89 tacctcacgtccatggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcac 148
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggcc 235
||||| |||||| || ||||||| ||||| | ||||| ||||||| | || || |
Sbjct: 149 aacctcggcggggtcacctcgctgcccgacctggcggccgtgctgtccatcccggcaagc 208
Query: 236 aagctcccgttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||| ||||||||||| ||| ||||||| ||||||||| || |||||||||||
Sbjct: 209 aagcagccgttcctcggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgc 264
>gb|AL504052.1|AL504052 AL504052 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04A17V 5', mRNA sequence
Length = 661
Score = 125 bits (63), Expect = 4e-027
Identities = 188/230 (81%)
Strand = Plus / Plus
Query: 59 cccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 29 cccacggatgccgagctgctgcaggcacaggcggacctgtggcgccacagcctctactac 88
Query: 119 ctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaac 178
|| || ||||||| |||| ||||| | ||||| ||||||||| ||||||||| |
Sbjct: 89 ctcacgtccatggggctccgctgcgccatcaagctcggcatcccgacggccatccaccgc 148
Query: 179 ctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaag 238
|| |||||| || ||||||||||| | ||||||||||||| || || ||| ||||
Sbjct: 149 ctcggcggggncacctcgctgccggacttgatggccgcgctgtcgcttccggcgagcaag 208
Query: 239 ctcccgttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtctt 288
| || ||||||| ||| | ||||| |||||||||||||||| |||||
Sbjct: 209 cagccattcctcgaccgcctaatgcgtgtgctggtcacgtcgggtgtctt 258
>gb|BF626066.2|BF626066 HVSMEa0015J06f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0015J06f, mRNA sequence
Length = 479
Score = 115 bits (58), Expect = 4e-024
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||| ||||||| |||||||||||||| || || |||||||||||||||||||| |||
Sbjct: 21 gttcccgcggacgctgagctgctgcaggcacatgcagacctgtggcgccacagcctatac 80
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
|||||| |||||||||||| |||||| || ||||| | ||||| || || ||||||
Sbjct: 81 tacctgtgctccatggcgctccggtgcgccgtcgagctagagatcccaactgcgatccac 140
Query: 176 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccct 225
|||||||||| ||| ||||||| ||||| ||||||||||||||||
Sbjct: 141 cgcctaggcggggtcgcctcgctgcctgacctgatggccgcgctgtccct 190
>gb|BF618543.2|BF618543 HVSMEc0006A01f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0006A01f, mRNA sequence
Length = 555
Score = 113 bits (57), Expect = 2e-023
Identities = 143/171 (83%), Gaps = 1/171 (0%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 291 gttcccacagacgctgagctgctgcaggcacaggcagacctgtggcgccacagcctctac 350
Query: 116 tacctgacatccatgg-cgctcaagtgcgcggtggagctccacatcccgaccgccatcca 174
||||| | | ||||| | ||| |||||| || |||||| | |||||||| ||||||||
Sbjct: 351 tacctntcctncatggcccctccggtgcgccgtcgagctcgagatcccgactgccatcca 410
Query: 175 caacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccct 225
| ||| |||||| | | | ||||||| ||||| |||||| |||||||||
Sbjct: 411 ccgccttggcggggcgggctcgctgcccgacctgatggccgagctgtccct 461
>gb|BQ765347.1|BQ765347 EBro03_SQ006_M19_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_M19 5', mRNA sequence
Length = 380
Score = 111 bits (56), Expect = 6e-023
Identities = 113/132 (85%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
||||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||||||
Sbjct: 94 gttcccacggatgccgagctgctgcaggctcaggctgacctgtggcgccacaccctctac 153
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| || ||||||| |||| ||||| || ||||| ||||||||| || || |||
Sbjct: 154 tacctcacgtccatggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcac 213
Query: 176 aacctaggcggg 187
||||| ||||||
Sbjct: 214 aacctcggcggg 225
>gb|BF255254.2|BF255254 HVSMEf0006F22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006F22f, mRNA sequence
Length = 603
Score = 109 bits (55), Expect = 2e-022
Identities = 112/131 (85%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| || ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 424 gttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctctac 483
Query: 116 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 175
||||| || ||||||| |||| ||||| || ||||| ||||||||| || || |||
Sbjct: 484 tacctcacgtccatggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcac 543
Query: 176 aacctaggcgg 186
||||| |||||
Sbjct: 544 aacctcggcgg 554
>gb|BF626135.2|BF626135 HVSMEa0015P20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0015P20f, mRNA sequence
Length = 476
Score = 107 bits (54), Expect = 9e-022
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 59 cccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 59 cccacggacgctgagctgctgcaggcacaggctgacctgtggcgccacagcctctactac 118
Query: 119 ctgacatccatggcgctc 136
||| | ||||||| ||||
Sbjct: 119 ctgtcctccatggggctc 136
>gb|BF257563.2|BF257563 HVSMEf0013E02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013E02f, mRNA sequence
Length = 492
Score = 107 bits (54), Expect = 9e-022
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 59 cccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 4 cccacggacgctgagctgctgcaggcacaggctgacctgtggcgccacagcctctactac 63
Query: 119 ctgacatccatggcgctc 136
||| | ||||||| ||||
Sbjct: 64 ctgtcctccatggggctc 81
>gb|BF260366.2|BF260366 HVSMEf0021M22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021M22f, mRNA sequence
Length = 788
Score = 107 bits (54), Expect = 9e-022
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 59 cccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 59 cccacggacgctgagctgctgcaggcacaggctgacctgtggcgccacagcctctactac 118
Query: 119 ctgacatccatggcgctc 136
||| | ||||||| ||||
Sbjct: 119 ctgtcctccatggggctc 136
Score = 42.1 bits (21), Expect = 0.046
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 267 tgctggtcacgtcgggcgtcttcgc 291
|||| ||||||||||||||||||||
Sbjct: 267 tgctcgtcacgtcgggcgtcttcgc 291
>gb|BF260804.2|BF260804 HVSMEf0022P20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022P20f, mRNA sequence
Length = 729
Score = 107 bits (54), Expect = 9e-022
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 59 cccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 59 cccacggacgctgagctgctgcaggcacaggctgacctgtggcgccacagcctctactac 118
Query: 119 ctgacatccatggcgctc 136
||| | ||||||| ||||
Sbjct: 119 ctgtcctccatggggctc 136
Score = 42.1 bits (21), Expect = 0.046
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 267 tgctggtcacgtcgggcgtcttcgc 291
|||| ||||||||||||||||||||
Sbjct: 267 tgctcgtcacgtcgggcgtcttcgc 291
>gb|BF629846.2|BF629846 HVSMEb0007B06f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0007B06f, mRNA sequence
Length = 501
Score = 105 bits (53), Expect = 4e-021
Identities = 133/157 (84%), Gaps = 2/157 (1%)
Strand = Plus / Plus
Query: 68 gccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgacatcc 127
|||||||| |||||||| |||||||||||||||||||||| ||| |||||||| || |||
Sbjct: 88 gccgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtcc 147
Query: 128 atggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc-gg 186
|||| |||| ||||| ||| ||||| ||||||||| || ||||||||||| ||| ||
Sbjct: 148 atggggctccgctgcgccgtgaagctcggcatcccgacggcgatccacaacctcggcggg 207
Query: 187 gtctgccacgctgccggacctcgtggccgcgctgtcc 223
|||| || ||||| | ||||| | |||||||||||||
Sbjct: 208 gtct-cctcgctggctgacctggcggccgcgctgtcc 243
>gb|AV913622.1|AV913622 AV913622 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22l17 5', mRNA sequence
Length = 532
Score = 105 bits (53), Expect = 4e-021
Identities = 184/225 (81%), Gaps = 2/225 (0%)
Strand = Plus / Plus
Query: 68 gccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgacatcc 127
|||||||| |||||||| |||||||||||||||||||||| ||| |||||||| || |||
Sbjct: 62 gccgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtcc 121
Query: 128 atggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc-gg 186
|||| |||| ||||| || ||||| ||||||||| || ||||||||||| ||| ||
Sbjct: 122 atggggctccgctgcgccgtcaagctcggcatcccgacggcgatccacaacctcggcggg 181
Query: 187 gtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgtt 246
|||| || ||||| | ||||| | ||||||||||||| | || || ||||| |||||
Sbjct: 182 gtct-cctcgctggctgacctggcggccgcgctgtccatccccgcaagcaagcagccgtt 240
Query: 247 cctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
||| || ||| ||||||| ||||||||| || |||||||||||
Sbjct: 241 ccttggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgc 285
>gb|AV913744.1|AV913744 AV913744 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23c06 5', mRNA sequence
Length = 565
Score = 105 bits (53), Expect = 4e-021
Identities = 184/225 (81%), Gaps = 2/225 (0%)
Strand = Plus / Plus
Query: 68 gccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgacatcc 127
|||||||| |||||||| |||||||||||||||||||||| ||| |||||||| || |||
Sbjct: 95 gccgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtcc 154
Query: 128 atggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc-gg 186
|||| |||| ||||| || ||||| ||||||||| || ||||||||||| ||| ||
Sbjct: 155 atggggctccgctgcgccgtcaagctcggcatcccgacggcgatccacaacctcggcggg 214
Query: 187 gtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgtt 246
|||| || ||||| | ||||| | ||||||||||||| | || || ||||| |||||
Sbjct: 215 gtct-cctcgctggctgacctggcggccgcgctgtccatccccgcaagcaagcagccgtt 273
Query: 247 cctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
||| || ||| ||||||| ||||||||| || |||||||||||
Sbjct: 274 ccttggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgc 318
>gb|AV916549.1|AV916549 AV916549 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17l08 5', mRNA sequence
Length = 470
Score = 105 bits (53), Expect = 4e-021
Identities = 184/225 (81%), Gaps = 2/225 (0%)
Strand = Plus / Plus
Query: 68 gccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgacatcc 127
|||||||| |||||||| |||||||||||||||||||||| ||| |||||||| || |||
Sbjct: 62 gccgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtcc 121
Query: 128 atggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc-gg 186
|||| |||| ||||| || ||||| ||||||||| || ||||||||||| ||| ||
Sbjct: 122 atggggctccgctgcgccgtcaagctcggcatcccgacggcgatccacaacctcggcggg 181
Query: 187 gtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgtt 246
|||| || ||||| | ||||| | ||||||||||||| | || || ||||| |||||
Sbjct: 182 gtct-cctcgctggctgacctggcggccgcgctgtccatccccgcaagcaagcagccgtt 240
Query: 247 cctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
||| || ||| ||||||| ||||||||| || |||||||||||
Sbjct: 241 ccttggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgc 285
>gb|BJ464939.1|BJ464939 BJ464939 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36k16 5', mRNA sequence
Length = 566
Score = 105 bits (53), Expect = 4e-021
Identities = 184/225 (81%), Gaps = 2/225 (0%)
Strand = Plus / Plus
Query: 68 gccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgacatcc 127
|||||||| |||||||| |||||||||||||||||||||| ||| |||||||| || |||
Sbjct: 94 gccgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtcc 153
Query: 128 atggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc-gg 186
|||| |||| ||||| || ||||| ||||||||| || ||||||||||| ||| ||
Sbjct: 154 atggggctccgctgcgccgtcaagctcggcatcccgacggcgatccacaacctcggcggg 213
Query: 187 gtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgtt 246
|||| || ||||| | ||||| | ||||||||||||| | || || ||||| |||||
Sbjct: 214 gtct-cctcgctggctgacctggcggccgcgctgtccatccccgcaagcaagcagccgtt 272
Query: 247 cctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
||| || ||| ||||||| ||||||||| || |||||||||||
Sbjct: 273 ccttggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgc 317
>gb|BJ465166.1|BJ465166 BJ465166 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38e18 5', mRNA sequence
Length = 580
Score = 105 bits (53), Expect = 4e-021
Identities = 184/225 (81%), Gaps = 2/225 (0%)
Strand = Plus / Plus
Query: 68 gccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgacatcc 127
|||||||| |||||||| |||||||||||||||||||||| ||| |||||||| || |||
Sbjct: 63 gccgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtcc 122
Query: 128 atggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc-gg 186
|||| |||| ||||| || ||||| ||||||||| || ||||||||||| ||| ||
Sbjct: 123 atggggctccgctgcgccgtcaagctcggcatcccgacggcgatccacaacctcggcggg 182
Query: 187 gtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgtt 246
|||| || ||||| | ||||| | ||||||||||||| | || || ||||| |||||
Sbjct: 183 gtct-cctcgctggctgacctggcggccgcgctgtccatccccgcaagcaagcagccgtt 241
Query: 247 cctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
||| || ||| ||||||| ||||||||| || |||||||||||
Sbjct: 242 ccttggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgc 286
>gb|AL504860.1|AL504860 AL504860 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06J23V 5', mRNA sequence
Length = 234
Score = 99.6 bits (50), Expect = 2e-019
Identities = 135/164 (82%)
Strand = Plus / Plus
Query: 59 cccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
|||||||| ||||||||| ||||||| || || |||||||||||||||||||||||||||
Sbjct: 27 cccacggatgccgagctgntgcaggcacangcggacctgtggcgccacagcctctactac 86
Query: 119 ctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaac 178
|| || ||||||| |||| ||||| | ||||| ||||||||| ||||||||| |
Sbjct: 87 ctcacgtccatggggctccgctgcgccatcaagctcggcatcccgacggccatccaccgc 146
Query: 179 ctaggcgggtctgccacgctgccggacctcgtggccgcgctgtc 222
|| |||||| || ||||||||||| | |||||||||||||
Sbjct: 147 ctcggcggggtcacctcgctgccggacttgatggccgcgctgtc 190
>gb|BF261193.2|BF261193 HVSMEf0011F03f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011F03f, mRNA sequence
Length = 825
Score = 99.6 bits (50), Expect = 2e-019
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 63 cggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctga 122
||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 63 cggacgctgagctgctgcaggcacaggctgacctgtggcgccacagcctctactacctgt 122
Query: 123 catccatggcgctc 136
| ||||||| ||||
Sbjct: 123 cctccatggggctc 136
Score = 42.1 bits (21), Expect = 0.046
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 267 tgctggtcacgtcgggcgtcttcgc 291
|||| ||||||||||||||||||||
Sbjct: 267 tgctcgtcacgtcgggcgtcttcgc 291
>gb|BF628014.2|BF628014 HVSMEb0002J23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0002J23f, mRNA sequence
Length = 665
Score = 97.6 bits (49), Expect = 9e-019
Identities = 183/225 (81%), Gaps = 2/225 (0%)
Strand = Plus / Plus
Query: 68 gccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgacatcc 127
|||||||| |||||||| |||||||||||||||||||||| ||| |||||||| || |||
Sbjct: 87 gccgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtcc 146
Query: 128 atggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacct-aggcgg 186
|||| |||| ||||| || ||||| ||||||||| || ||||||||||| || ||
Sbjct: 147 atggggctccgctgcgccgtcaagctcggcatcccgacggcgatccacaacctcagcggg 206
Query: 187 gtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgtt 246
|||| || ||||| | ||||| | ||||||||||||| | || || ||||| |||||
Sbjct: 207 gtct-cctcgctggctgacctggcggccgcgctgtccatccccgcaagcaagcagccgtt 265
Query: 247 cctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
||| || ||| ||||||| ||||||||| || |||||||||||
Sbjct: 266 ccttggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgc 310
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 570 tggccgcgcacgacaacctggccatcgggaccgtcatacgggagtgc 616
||||||| ||||||||||| | ||||||||| |||| |||||||||
Sbjct: 599 tggccgcccacgacaaccttgggatcgggaccatcatccgggagtgc 645
>gb|BF260927.2|BF260927 HVSMEf0023E23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023E23f, mRNA sequence
Length = 752
Score = 93.7 bits (47), Expect = 1e-017
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 58 tcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctacta 117
|||||| || ||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 34 tcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctctacta 93
Query: 118 cct 120
|||
Sbjct: 94 cct 96
>gb|BF257368.2|BF257368 HVSMEf0012L06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012L06f, mRNA sequence
Length = 539
Score = 83.8 bits (42), Expect = 1e-014
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 59 cccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct: 84 cccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctac 143
Query: 119 ct 120
||
Sbjct: 144 ct 145
Score = 52.0 bits (26), Expect = 5e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 408 actacgtggaggccggcatgtccctggccgactggttcaagaagga 453
||||||||||||| | |||| ||||||||||||||||| ||||||
Sbjct: 433 actacgtggaggcggccatgggcctggccgactggttcaggaagga 478
Score = 52.0 bits (26), Expect = 5e-005
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 212 gccgcgctgtccctgccagcggccaagctcccgttcctcgggcgcgtgatgcggctgctg 271
||||| ||||||||||| ||| ||||||| |||||||||| ||| || |||| | |||
Sbjct: 237 gccgccctgtccctgcccgcgtccaagctgccgttcctcgcccgcctgctgcgccagctc 296
Query: 272 gtcacgtcgggcgtcttc 289
| |||| |||||||||||
Sbjct: 297 gccacggcgggcgtcttc 314
>gb|BF257748.2|BF257748 HVSMEf0013M04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013M04f, mRNA sequence
Length = 491
Score = 83.8 bits (42), Expect = 1e-014
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 59 cccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct: 81 cccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctac 140
Query: 119 ct 120
||
Sbjct: 141 ct 142
Score = 52.0 bits (26), Expect = 5e-005
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 408 actacgtggaggccggcatgtccctggccgactggttcaagaagga 453
||||||||||||| |||||| ||||||||||||||| ||||||||
Sbjct: 430 actacgtggaggcgggcatgggcctggccgactggtt-aagaagga 474
>gb|BF260349.2|BF260349 HVSMEf0021M05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021M05f, mRNA sequence
Length = 543
Score = 83.8 bits (42), Expect = 1e-014
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 59 cccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct: 70 cccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctac 129
Query: 119 ct 120
||
Sbjct: 130 ct 131
Score = 52.0 bits (26), Expect = 5e-005
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 212 gccgcgctgtccctgccagcggccaagctcccgttcctcgggcgcgtgatgcggctgctg 271
||||| ||||||||||| ||| ||||||| |||||||||| ||| || |||| | |||
Sbjct: 223 gccgccctgtccctgcccgcgtccaagctgccgttcctcgcccgcctgctgcgccagctc 282
Query: 272 gtcacgtcgggcgtcttc 289
| |||| |||||||||||
Sbjct: 283 gccacggcgggcgtcttc 300
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 408 actacgtggaggccggcatgtccctggccgactggttca 446
||||||||||||| | |||| |||||||||||||||||
Sbjct: 419 actacgtggaggcggccatgggcctggccgactggttca 457
>gb|BF259024.3|BF259024 HVSMEf0017H01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0017H01f, mRNA sequence
Length = 804
Score = 83.8 bits (42), Expect = 1e-014
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 59 cccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct: 85 cccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctac 144
Query: 119 ct 120
||
Sbjct: 145 ct 146
Score = 52.0 bits (26), Expect = 5e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 408 actacgtggaggccggcatgtccctggccgactggttcaagaagga 453
||||||||||||| | |||| ||||||||||||||||| ||||||
Sbjct: 434 actacgtggaggcggacatgggcctggccgactggttcaggaagga 479
Score = 52.0 bits (26), Expect = 5e-005
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 212 gccgcgctgtccctgccagcggccaagctcccgttcctcgggcgcgtgatgcggctgctg 271
||||| ||||||||||| ||| ||||||| |||||||||| ||| || |||| | |||
Sbjct: 238 gccgccctgtccctgcccgcgtccaagctgccgttcctcgcccgcctgctgcgccagctc 297
Query: 272 gtcacgtcgggcgtcttc 289
| |||| |||||||||||
Sbjct: 298 gccacggcgggcgtcttc 315
>gb|CB882435.1|CB882435 HL01N17w HL Hordeum vulgare subsp. vulgare cDNA clone HL01N17
3-PRIME, mRNA sequence
Length = 553
Score = 83.8 bits (42), Expect = 1e-014
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 59 cccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct: 89 cccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctac 148
Query: 119 ct 120
||
Sbjct: 149 ct 150
Score = 52.0 bits (26), Expect = 5e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 408 actacgtggaggccggcatgtccctggccgactggttcaagaagga 453
||||||||||||| | |||| ||||||||||||||||| ||||||
Sbjct: 438 actacgtggaggcggccatgggcctggccgactggttcaggaagga 483
Score = 52.0 bits (26), Expect = 5e-005
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 212 gccgcgctgtccctgccagcggccaagctcccgttcctcgggcgcgtgatgcggctgctg 271
||||| ||||||||||| ||| ||||||| |||||||||| ||| || |||| | |||
Sbjct: 242 gccgccctgtccctgcccgcgtccaagctgccgttcctcgcccgcctgctgcgccagctc 301
Query: 272 gtcacgtcgggcgtcttc 289
| |||| |||||||||||
Sbjct: 302 gccacggcgggcgtcttc 319
>gb|BF629787.2|BF629787 HVSMEb0013N01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013N01f, mRNA sequence
Length = 829
Score = 81.8 bits (41), Expect = 5e-014
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 68 gccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgacatcc 127
|||||||| |||||||| |||||||||||||||||||||| ||| ||||||||||| | |
Sbjct: 75 gccgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctgacgtgc 134
Query: 128 atggcgctc 136
|||| ||||
Sbjct: 135 atggggctc 143
>gb|BG310376.1|BG310376 HVSMEc0018B10f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0018B10f, mRNA sequence
Length = 793
Score = 81.8 bits (41), Expect = 5e-014
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 68 gccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgacatcc 127
|||||||| |||||||| |||||||||||||||||||||| ||| |||||||| || |||
Sbjct: 74 gccgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtcc 133
Query: 128 atggcgctc 136
|||| ||||
Sbjct: 134 atggggctc 142
>gb|BF258909.2|BF258909 HVSMEf0017A08f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0017A08f, mRNA sequence
Length = 792
Score = 81.8 bits (41), Expect = 5e-014
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| || ||| ||||||||||||| || ||||||||||||||||||| ||| |||
Sbjct: 82 gttcccactgatgcccagctgctgcaggctcatgccgacctgtggcgccacaccctgtac 141
Query: 116 tacctgacatccatggcgctc 136
||||| || ||||||| ||||
Sbjct: 142 tacctcacgtccatggggctc 162
>gb|BF260951.2|BF260951 HVSMEf0023F23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023F23f, mRNA sequence
Length = 824
Score = 75.8 bits (38), Expect = 3e-012
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 59 cccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
||||| ||||| |||||||| ||||||||| ||||||||||||||||||| |||| ||||
Sbjct: 83 cccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacaggctctgctac 142
Query: 119 ct 120
||
Sbjct: 143 ct 144
Score = 63.9 bits (32), Expect = 1e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 410 tacgtggaggccggcatgtccctggccgactggttcaagaagga 453
||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 434 tacgtggaggccgccatgggcctggccgactggttcaagaagga 477
Score = 40.1 bits (20), Expect = 0.18
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 212 gccgcgctgtccctgccagcggccaagctcccgttcctcg 251
||||| ||||||||||| ||| |||||| ||||||||||
Sbjct: 236 gccgccctgtccctgcccgcgttcaagctgccgttcctcg 275
>gb|BF260237.3|BF260237 HVSMEf0021H13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021H13f, mRNA sequence
Length = 961
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 798 tgctcaagctcgtcctgcacttctggagcgacgacgactgcgtcaagatcctggagctgt 857
|||||||||| | |||||||||||||||||||| || ||| |||||||||||| | ||
Sbjct: 190 tgctcaagcttgatctgcacttctggagcgacgaggattgcatcaagatcctggcacagt 249
Query: 858 gcaggaaggcc 868
|||||||||||
Sbjct: 250 gcaggaaggcc 260
Score = 42.1 bits (21), Expect = 0.046
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 690 ccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||| | |||||| ||| ||||||| |||||||||||| |||||||
Sbjct: 43 ccatcgacgaggcctacccgcacatcaactgcaccgtgctcgaccttcc 91
>gb|AV926277.1|AV926277 AV926277 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18m14 5', mRNA sequence
Length = 654
Score = 65.9 bits (33), Expect = 3e-009
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 798 tgctcaagctcgtcctgcacttctggagcgacgacgactgcgtcaagatcctggagctgt 857
|||||||||| || |||||||||||||||||||| || ||| |||||||||| | | |
Sbjct: 88 tgctcaagcttgttctgcacttctggagcgacgaggattgcatcaagatcctcgcacaat 147
Query: 858 gcaggaaggccatcccttcccgcgaagaaggagggaa 894
||||||||||| | ||| | || |||| |||||||||
Sbjct: 148 gcaggaaggccgttcctccacgtgaagcaggagggaa 184
Score = 44.1 bits (22), Expect = 0.012
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 1025 atctttaccaaggctggcttctccgactacaaggttgtcaagaaaatcggagctcgtggt 1084
||||| ||||||||||||||| | ||| ||| |||||||||| | |||||||| | |
Sbjct: 312 atcttcaccaaggctggcttcagtggctataagattgtcaagaagctgggagctcgagct 371
Query: 1085 gtcatcgaggtcta 1098
||||| ||||||||
Sbjct: 372 gtcattgaggtcta 385
>gb|BQ765268.1|BQ765268 EBro03_SQ006_N17_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_N17 5', mRNA sequence
Length = 615
Score = 65.9 bits (33), Expect = 3e-009
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 798 tgctcaagctcgtcctgcacttctggagcgacgacgactgcgtcaagatcctggagctgt 857
|||||||||| || |||||||||||||||||||| || ||| |||||||||| | | |
Sbjct: 373 tgctcaagcttgttctgcacttctggagcgacgaggattgcatcaagatcctcgcacaat 432
Query: 858 gcaggaaggccatcccttcccgcgaagaaggagggaa 894
||||||||||| | ||| | || |||| |||||||||
Sbjct: 433 gcaggaaggccgttcctccacgtgaagcaggagggaa 469
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 690 ccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||| |||||| ||| ||||||| |||||||||||| |||||||
Sbjct: 226 ccatcgtcgaggcctacccgcacatcaactgcaccgtgctcgaccttcc 274
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 207,888
Number of Sequences: 312970
Number of extensions: 207888
Number of successful extensions: 63427
Number of sequences better than 0.5: 169
Number of HSP's better than 0.5 without gapping: 165
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 62821
Number of HSP's gapped (non-prelim): 566
length of query: 1327
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1308
effective length of database: 169,188,109
effective search space: 221298046572
effective search space used: 221298046572
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)