BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455862.2.1
(712 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB875146.1|CB875146 HX07G17w HX Hordeum vulgare subsp. v... 424 e-117
gb|BF622057.1|BF622057 HVSMEa0001K09f Hordeum vulgare seedl... 391 e-107
gb|BF257690.2|BF257690 HVSMEf0013J17f Hordeum vulgare seedl... 365 1e-099
gb|BI777299.2|BI777299 EBro03_SQ002_M15_R root, 3 week, wat... 355 1e-096
gb|AJ433500.1|AJ433500 AJ433500 S00002 Hordeum vulgare subs... 347 3e-094
gb|CA023198.1|CA023198 HZ45I10r HZ Hordeum vulgare subsp. v... 188 2e-046
gb|CA023772.1|CA023772 HZ47F20r HZ Hordeum vulgare subsp. v... 80 1e-013
gb|BF630623.2|BF630623 HVSMEb0012E18f Hordeum vulgare seedl... 78 4e-013
gb|BF631048.2|BF631048 HVSMEb0014N08f Hordeum vulgare seedl... 78 4e-013
gb|BF631110.2|BF631110 HVSMEb0015A04f Hordeum vulgare seedl... 78 4e-013
gb|BF255206.2|BF255206 HVSMEf0006D21f Hordeum vulgare seedl... 78 4e-013
gb|BI959504.1|BI959504 HVSMEn0019O24f Hordeum vulgare rachi... 78 4e-013
gb|BG301313.2|BG301313 HVSMEb0020K16f Hordeum vulgare seedl... 78 4e-013
gb|AV914496.1|AV914496 AV914496 K. Sato unpublished cDNA li... 78 4e-013
gb|AV922775.1|AV922775 AV922775 K. Sato unpublished cDNA li... 78 4e-013
gb|AV927496.1|AV927496 AV927496 K. Sato unpublished cDNA li... 78 4e-013
gb|AV927618.1|AV927618 AV927618 K. Sato unpublished cDNA li... 78 4e-013
gb|AV930767.1|AV930767 AV930767 K. Sato unpublished cDNA li... 78 4e-013
gb|BJ446899.1|BJ446899 BJ446899 K. Sato unpublished cDNA li... 78 4e-013
gb|BJ446906.1|BJ446906 BJ446906 K. Sato unpublished cDNA li... 78 4e-013
gb|BJ447562.1|BJ447562 BJ447562 K. Sato unpublished cDNA li... 78 4e-013
gb|BJ467570.1|BJ467570 BJ467570 K. Sato unpublished cDNA li... 78 4e-013
gb|BI778147.2|BI778147 EBro07_SQ002_F18_R root, 3 week, red... 78 4e-013
emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotra... 78 4e-013
gb|BE422291.1|BE422291 HWM022cE.11r ITEC HWM Barley Leaf Li... 76 2e-012
gb|BF620985.1|BF620985 HVSMEa0003D18f Hordeum vulgare seedl... 76 2e-012
gb|AV921125.1|AV921125 AV921125 K. Sato unpublished cDNA li... 76 2e-012
gb|AV928124.1|AV928124 AV928124 K. Sato unpublished cDNA li... 76 2e-012
gb|BJ468727.1|BJ468727 BJ468727 K. Sato unpublished cDNA li... 76 2e-012
gb|BU972696.1|BU972696 HB22H07r BC Hordeum vulgare subsp. v... 76 2e-012
gb|BU996830.1|BU996830 HM14O16r HM Hordeum vulgare subsp. v... 76 2e-012
gb|CA005380.1|CA005380 HU10N24u HU Hordeum vulgare subsp. v... 76 2e-012
gb|CK122280.1|CK122280 BES1824102l14 BES1824 Hordeum vulgar... 76 2e-012
emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotr... 76 2e-012
gb|AV931936.1|AV931936 AV931936 K. Sato unpublished cDNA li... 74 7e-012
gb|BE420888.1|BE420888 HWM003.F01 ITEC HWM Barley Leaf Libr... 72 3e-011
gb|AL500476.1|AL500476 AL500476 Hordeum vulgare Barke etiol... 72 3e-011
gb|BE194828.3|BE194828 HVSMEh0087B22f Hordeum vulgare 5-45 ... 72 3e-011
gb|AV915768.1|AV915768 AV915768 K. Sato unpublished cDNA li... 72 3e-011
gb|AV919560.1|AV919560 AV919560 K. Sato unpublished cDNA li... 72 3e-011
gb|AV920882.1|AV920882 AV920882 K. Sato unpublished cDNA li... 72 3e-011
gb|AV929296.1|AV929296 AV929296 K. Sato unpublished cDNA li... 72 3e-011
gb|AV930447.1|AV930447 AV930447 K. Sato unpublished cDNA li... 72 3e-011
gb|AV930745.1|AV930745 AV930745 K. Sato unpublished cDNA li... 72 3e-011
gb|BJ447412.1|BJ447412 BJ447412 K. Sato unpublished cDNA li... 72 3e-011
gb|BJ450401.1|BJ450401 BJ450401 K. Sato unpublished cDNA li... 72 3e-011
gb|BJ454898.1|BJ454898 BJ454898 K. Sato unpublished cDNA li... 72 3e-011
gb|BJ455314.1|BJ455314 BJ455314 K. Sato unpublished cDNA li... 72 3e-011
gb|BJ457816.1|BJ457816 BJ457816 K. Sato unpublished cDNA li... 72 3e-011
gb|BU968654.1|BU968654 HB08C22r BC Hordeum vulgare subsp. v... 72 3e-011
gb|BF630403.2|BF630403 HVSMEb0009B18f Hordeum vulgare seedl... 70 1e-010
gb|BF620598.2|BF620598 HVSMEc0020F14f Hordeum vulgare seedl... 70 1e-010
gb|BF256444.2|BF256444 HVSMEf0009P18f Hordeum vulgare seedl... 70 1e-010
gb|BM816097.1|BM816097 HC111H09_T3.ab1 HC Hordeum vulgare s... 70 1e-010
gb|BI777390.2|BI777390 EBro04_SQ001_B07_R root, 3 week, sal... 70 1e-010
gb|BQ659487.1|BQ659487 HE01I24u HE Hordeum vulgare subsp. v... 64 7e-009
gb|BQ763770.1|BQ763770 EBro03_SQ005_J09_R root, 3 week, wat... 62 3e-008
gb|BM816111.1|BM816111 HC113E12_SK.ab1 HC Hordeum vulgare s... 60 1e-007
gb|BF618866.2|BF618866 HVSMEc0008D05f Hordeum vulgare seedl... 58 4e-007
gb|BI778106.2|BI778106 EBro07_SQ002_D23_R root, 3 week, red... 50 1e-004
gb|CA030559.1|CA030559 HX07G17r HX Hordeum vulgare subsp. v... 50 1e-004
gb|AV911579.1|AV911579 AV911579 K. Sato unpublished cDNA li... 46 0.002
gb|BQ760822.1|BQ760822 EBro03_SQ003_J06_R root, 3 week, wat... 46 0.002
gb|BU971930.1|BU971930 HB20B14r BC Hordeum vulgare subsp. v... 44 0.006
gb|BI956298.1|BI956298 HVSMEn0002B22f Hordeum vulgare rachi... 42 0.024
gb|AV922899.1|AV922899 AV922899 K. Sato unpublished cDNA li... 42 0.024
gb|CV062318.1|CV062318 BNEL78g1 Barley EST endosperm librar... 42 0.024
gb|BF626811.2|BF626811 HVSMEb0001G10f Hordeum vulgare seedl... 40 0.097
gb|BI957993.1|BI957993 HVSMEn0012L12f Hordeum vulgare rachi... 40 0.097
gb|BI958315.1|BI958315 HVSMEn0014G02f Hordeum vulgare rachi... 40 0.097
gb|BJ455157.1|BJ455157 BJ455157 K. Sato unpublished cDNA li... 40 0.097
gb|BQ468926.1|BQ468926 HM02N03r HM Hordeum vulgare subsp. v... 40 0.097
gb|CB858845.1|CB858845 HI08H24w HI Hordeum vulgare subsp. v... 40 0.097
gb|CV058661.1|CV058661 BNEL3D9 Barley EST endosperm library... 40 0.097
gb|BE422297.1|BE422297 HWM022cF.08r ITEC HWM Barley Leaf Li... 38 0.38
gb|AL500168.1|AL500168 AL500168 Hordeum vulgare Barke etiol... 38 0.38
gb|AL510378.1|AL510378 AL510378 Hordeum vulgare Barke devel... 38 0.38
gb|BG300595.1|BG300595 HVSMEb0017J24f Hordeum vulgare seedl... 38 0.38
gb|BF066150.3|BF066150 HV_CEb0014P20f Hordeum vulgare seedl... 38 0.38
gb|AV927108.1|AV927108 AV927108 K. Sato unpublished cDNA li... 38 0.38
gb|AJ434939.1|AJ434939 AJ434939 S00002 Hordeum vulgare subs... 38 0.38
gb|BJ448019.1|BJ448019 BJ448019 K. Sato unpublished cDNA li... 38 0.38
gb|BJ450349.1|BJ450349 BJ450349 K. Sato unpublished cDNA li... 38 0.38
gb|BJ452726.1|BJ452726 BJ452726 K. Sato unpublished cDNA li... 38 0.38
gb|BJ453015.1|BJ453015 BJ453015 K. Sato unpublished cDNA li... 38 0.38
gb|BJ453724.1|BJ453724 BJ453724 K. Sato unpublished cDNA li... 38 0.38
gb|BJ455766.1|BJ455766 BJ455766 K. Sato unpublished cDNA li... 38 0.38
gb|BJ457767.1|BJ457767 BJ457767 K. Sato unpublished cDNA li... 38 0.38
gb|BJ460274.1|BJ460274 BJ460274 K. Sato unpublished cDNA li... 38 0.38
gb|BJ460562.1|BJ460562 BJ460562 K. Sato unpublished cDNA li... 38 0.38
gb|BJ461265.1|BJ461265 BJ461265 K. Sato unpublished cDNA li... 38 0.38
gb|BJ463118.1|BJ463118 BJ463118 K. Sato unpublished cDNA li... 38 0.38
gb|BQ463679.1|BQ463679 HG01B14r HG Hordeum vulgare subsp. v... 38 0.38
gb|BQ659892.1|BQ659892 HG01B14u HG Hordeum vulgare subsp. v... 38 0.38
gb|BM374007.2|BM374007 EBma03_SQ003_F22_R maternal, 8 DPA, ... 38 0.38
gb|BM097131.2|BM097131 EBpi07_SQ002_I02_R pistil, 12 DPA, n... 38 0.38
gb|BI778716.2|BI778716 EBro01_SQ001_D05_R root, 3 week, hyd... 38 0.38
gb|BQ755871.1|BQ755871 EBed07_SQ003_G21_R endosperm, 28 DPA... 38 0.38
gb|BQ759379.1|BQ759379 EBpi01_SQ004_H12_R pistil, 1 DPA, no... 38 0.38
gb|BQ766327.1|BQ766327 EBro08_SQ005_L17_R root, 3 week, dro... 38 0.38
gb|BU972886.1|BU972886 HB23A18r BC Hordeum vulgare subsp. v... 38 0.38
gb|BU995341.1|BU995341 HM09P02r HM Hordeum vulgare subsp. v... 38 0.38
gb|BU996263.1|BU996263 HM13A22r HM Hordeum vulgare subsp. v... 38 0.38
gb|CA032132.1|CA032132 HX12B20r HX Hordeum vulgare subsp. v... 38 0.38
gb|CB881479.1|CB881479 HM09P02w HM Hordeum vulgare subsp. v... 38 0.38
gb|CD663930.1|CD663930 UCRHV18_07ae11_b1 Drought-stressed D... 38 0.38
gb|CK125034.1|CK125034 BES1824111B1c02 BES1824 Hordeum vulg... 38 0.38
emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotra... 38 0.38
>gb|CB875146.1|CB875146 HX07G17w HX Hordeum vulgare subsp. vulgare cDNA clone HX07G17
3-PRIME, mRNA sequence
Length = 606
Score = 424 bits (214), Expect = e-117
Identities = 301/330 (91%)
Strand = Plus / Minus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| | |||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct: 513 gacctgccctacccgggcgccaagcccatgtccgtgcacgccacgctctgggacggcagc 454
Query: 70 tactgggccacgcagcaggggaaggtgaaggtggactggtccgccgcgcccttcgccgtc 129
||||||||||||||| |||| ||||| || |||||||||| ||||||||||| ||||
Sbjct: 453 tactgggccacgcagaagggcaaggtccccgtcgactggtccggcgcgcccttcgtcgtc 394
Query: 130 tcctaccgcggctactccgccgacgcctgcgtgcccgacggcgacggccgcccgctctcc 189
|||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||
Sbjct: 393 tcctaccgcggctactccgccgacgcgtgtgtgcccaacggcgacggccgcccgctctcc 334
Query: 190 tgccccgccggcaccgaccgctggatgagccgccagctcgacgccgccgagtggggcacc 249
|||||||||||||||| |||||||||| |||||||||||||| ||||||| | ||||||
Sbjct: 333 tgccccgccggcaccggccgctggatggaccgccagctcgacgacgccgagcgcggcacc 274
Query: 250 gtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctggcgattc 309
|||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 273 gtcgcctgggccaggcgcgactacatgcgctacaactactgcgacgatggctggcgattc 214
Query: 310 ccgcagggcttccccgccgagtgctcccgc 339
||||||||||||||||||||||||||||||
Sbjct: 213 ccgcagggcttccccgccgagtgctcccgc 184
>gb|BF622057.1|BF622057 HVSMEa0001K09f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0001K09f, mRNA sequence
Length = 606
Score = 391 bits (197), Expect = e-107
Identities = 296/329 (89%)
Strand = Plus / Plus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| | |||||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct: 278 gacctgccctacccgggcgccaagcccatggcggtgcacgccacgctctgggacggcagc 337
Query: 70 tactgggccacgcagcaggggaaggtgaaggtggactggtccgccgcgcccttcgccgtc 129
|||||||| |||||||| |||| ||||||||||||||||||||| |||||||||| ||||
Sbjct: 338 tactgggcgacgcagcacgggagggtgaaggtggactggtccgcggcgcccttcgtcgtc 397
Query: 130 tcctaccgcggctactccgccgacgcctgcgtgcccgacggcgacggccgcccgctctcc 189
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
Sbjct: 398 tcctaccgcggctactccgccgacgcctgcgtgcccgccggcgccggccgcccgctcgca 457
Query: 190 tgccccgccggcaccgaccgctggatgagccgccagctcgacgccgccgagtggggcacc 249
|||||||||||||||||||||||||||| |||| || | |||||||||| | ||||||
Sbjct: 458 tgccccgccggcaccgaccgctggatgacgcgccggcccagcgccgccgagcgcggcacc 517
Query: 250 gtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctggcgattc 309
||| |||||||||| |||||||||||||||| ||||||||| |||||||||||| |||
Sbjct: 518 ctcgactgggccaggaggaactacatgcactacgactactgcgccgacggctggcggttc 577
Query: 310 ccgcagggcttccccgccgagtgctcccg 338
|| |||| ||||||||||||||||||||
Sbjct: 578 cccaaggggttccccgccgagtgctcccg 606
>gb|BF257690.2|BF257690 HVSMEf0013J17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013J17f, mRNA sequence
Length = 542
Score = 365 bits (184), Expect = 1e-099
Identities = 293/330 (88%)
Strand = Plus / Plus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| | |||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct: 114 gacctgccctacccgggcgccaagcccatgtccgtgcacgccacgctctgggacggcagc 173
Query: 70 tactgggccacgcagcaggggaaggtgaaggtggactggtccgccgcgcccttcgccgtc 129
||||||||||||||| |||| ||||| || |||||||||| ||||||||||| ||||
Sbjct: 174 tactgggccacgcagaagggcaaggtccccgtcgactggtccggcgcgcccttcgtcgtc 233
Query: 130 tcctaccgcggctactccgccgacgcctgcgtgcccgacggcgacggccgcccgctctcc 189
||||||||||| ||||||| |||||| || |||||| |||||||| |||||||| ||| |
Sbjct: 234 tcctaccgcgggtactccgacgacgcgtgtgtgcccaacggcgacagccgcccggtctnc 293
Query: 190 tgccccgccggcaccgaccgctggatgagccgccagctcgacgccgccgagtggggcacc 249
|||||||||||||||| |||||||||| ||| |||||||||| ||||||| | ||||||
Sbjct: 294 tgccccgccggcaccggccgctggatggaccgncagctcgacgacgccgagcgcggcacc 353
Query: 250 gtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctggcgattc 309
|||| ||||||||||| ||||||||| |||||||||||| ||||| ||||||||||||
Sbjct: 354 gtcgactgggccaggcgcgactacatgcgctacaactactgggacgatggctggcgattc 413
Query: 310 ccgcagggcttccccgccgagtgctcccgc 339
||||||||||||||||||||||||||||||
Sbjct: 414 ccgcagggcttccccgccgagtgctcccgc 443
>gb|BI777299.2|BI777299 EBro03_SQ002_M15_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_M15 5', mRNA sequence
Length = 383
Score = 355 bits (179), Expect = 1e-096
Identities = 257/283 (90%)
Strand = Plus / Plus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| | |||||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct: 98 gacctgccctacccgggcgccaagcccatggcggtgcacgccacgctctgggacggcagc 157
Query: 70 tactgggccacgcagcaggggaaggtgaaggtggactggtccgccgcgcccttcgccgtc 129
|||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| ||||
Sbjct: 158 tactgggcgacgcagcaggggagggtgaaggtggactggtccgcggcgcccttcgtcgtc 217
Query: 130 tcctaccgcggctactccgccgacgcctgcgtgcccgacggcgacggccgcccgctctcc 189
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
Sbjct: 218 tcctaccgcggctactccgccgacgcctgcgtgcccgccggcgccggccgcccgctcgca 277
Query: 190 tgccccgccggcaccgaccgctggatgagccgccagctcgacgccgccgagtggggcacc 249
|||||||||||||||||||||||||||| |||| || | ||||||||||| | ||||||
Sbjct: 278 tgccccgccggcaccgaccgctggatgacgcgccggcccaacgccgccgagcgcggcacc 337
Query: 250 gtcgcctgggccaggcagaactacatgcactacaactactgcg 292
||| |||||||||| |||||||||||||||| |||||||||
Sbjct: 338 ctcgactgggccaggaggaactacatgcactacgactactgcg 380
>gb|AJ433500.1|AJ433500 AJ433500 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200031B06F1, mRNA sequence
Length = 375
Score = 347 bits (175), Expect = 3e-094
Identities = 244/267 (91%)
Strand = Plus / Plus
Query: 73 tgggccacgcagcaggggaaggtgaaggtggactggtccgccgcgcccttcgccgtctcc 132
|||||||||||| |||| ||||| || |||||||||| ||||||||||| |||||||
Sbjct: 1 tgggccacgcagaagggcaaggtccccgtcgactggtccggcgcgcccttcgtcgtctcc 60
Query: 133 taccgcggctactccgccgacgcctgcgtgcccgacggcgacggccgcccgctctcctgc 192
||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct: 61 taccgcggctactccgccgacgcgtgtgtgcccaacggcgacggccgcccgctctcctgc 120
Query: 193 cccgccggcaccgaccgctggatgagccgccagctcgacgccgccgagtggggcaccgtc 252
||||||||||||| |||||||||| |||||||||||||| ||||||| | |||||||||
Sbjct: 121 cccgccggcaccggccgctggatggaccgccagctcgacgacgccgagcgcggcaccgtc 180
Query: 253 gcctgggccaggcagaactacatgcactacaactactgcgacgacggctggcgattcccg 312
||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 181 gcctgggccaggcgcgactacatgcgctacaactactgcgacgatggctggcgattcccg 240
Query: 313 cagggcttccccgccgagtgctcccgc 339
|||||||||||||||||||||||||||
Sbjct: 241 cagggcttccccgccgagtgctcccgc 267
>gb|CA023198.1|CA023198 HZ45I10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45I10
5-PRIME, mRNA sequence
Length = 518
Score = 188 bits (95), Expect = 2e-046
Identities = 151/170 (88%)
Strand = Plus / Plus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| | |||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct: 349 gacctgccctacccgggcgccaagcccatgtccgtgcacgccacgctctgggacggcagc 408
Query: 70 tactgggccacgcagcaggggaaggtgaaggtggactggtccgccgcgcccttcgccgtc 129
||||||||||||||| |||| ||||| || |||||||||| ||||||||||| ||||
Sbjct: 409 tactgggccacgcagaagggcaaggtccccgtcgactggtccggcgcgcccttcgtcgtc 468
Query: 130 tcctaccgcggctactccgccgacgcctgcgtgcccgacggcgacggccg 179
|||||||||||||||||||||||||| || |||||| |||| ||||||||
Sbjct: 469 tcctaccgcggctactccgccgacgcgtgtgtgcccaacggngacggccg 518
>gb|CA023772.1|CA023772 HZ47F20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47F20
5-PRIME, mRNA sequence
Length = 412
Score = 79.8 bits (40), Expect = 1e-013
Identities = 124/152 (81%)
Strand = Plus / Plus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 133 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagc 192
Query: 70 tactgggccacgcagcaggggaaggtgaaggtggactggtccgccgcgcccttcgccgtc 129
||||||||||| | || || | || ||| | |||||| || |||||||||| ||||
Sbjct: 193 tactgggccacccgccacggcgacgtcaagatcgactggacccaggcgcccttcgtcgtc 252
Query: 130 tcctaccgcggctactccgccgacgcctgcgt 161
|||||||||||||||| || ||| ||||||
Sbjct: 253 aactaccgcggctactcctccaacggctgcgt 284
>gb|BF630623.2|BF630623 HVSMEb0012E18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0012E18f, mRNA sequence
Length = 715
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 587 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagc 646
Query: 70 tactgggccac 80
|||||||||||
Sbjct: 647 tactgggccac 657
>gb|BF631048.2|BF631048 HVSMEb0014N08f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0014N08f, mRNA sequence
Length = 759
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 584 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagc 643
Query: 70 tactgggccac 80
|||||||||||
Sbjct: 644 tactgggccac 654
>gb|BF631110.2|BF631110 HVSMEb0015A04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015A04f, mRNA sequence
Length = 755
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 584 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagc 643
Query: 70 tactgggccac 80
|||||||||||
Sbjct: 644 tactgggccac 654
>gb|BF255206.2|BF255206 HVSMEf0006D21f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006D21f, mRNA sequence
Length = 584
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 65 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagc 124
Query: 70 tactgggccac 80
|||||||||||
Sbjct: 125 tactgggccac 135
Score = 58.0 bits (29), Expect = 4e-007
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 279 ctacaactactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcccg 338
|||| |||||||| |||||||||||| ||||| | ||||| |||||||||||||||||
Sbjct: 328 ctacgactactgcaccgacggctggcgcttccccaacggcttacccgccgagtgctcccg 387
Query: 339 c 339
|
Sbjct: 388 c 388
>gb|BI959504.1|BI959504 HVSMEn0019O24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019O24f, mRNA sequence
Length = 672
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 281 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagc 340
Query: 70 tactgggccac 80
|||||||||||
Sbjct: 341 tactgggccac 351
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 509 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 568
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 569 cgcttccccaacggcttccccgccgagtgctcccgc 604
>gb|BG301313.2|BG301313 HVSMEb0020K16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020K16f, mRNA sequence
Length = 901
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 585 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagc 644
Query: 70 tactgggccac 80
|||||||||||
Sbjct: 645 tactgggccac 655
Score = 40.1 bits (20), Expect = 0.097
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 190 tgccccgccggcaccgaccgctggatga 217
||||||||||||| ||||| ||||||||
Sbjct: 759 tgccccgccggcagcgacccctggatga 786
>gb|AV914496.1|AV914496 AV914496 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6j18 5', mRNA sequence
Length = 447
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 195 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagc 254
Query: 70 tactgggccac 80
|||||||||||
Sbjct: 255 tactgggccac 265
>gb|AV922775.1|AV922775 AV922775 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2f08 5', mRNA sequence
Length = 627
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 145 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagc 204
Query: 70 tactgggccac 80
|||||||||||
Sbjct: 205 tactgggccac 215
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 373 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 432
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 433 cgcttccccaacggcttccccgccgagtgctcccgc 468
>gb|AV927496.1|AV927496 AV927496 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2f08 3', mRNA sequence
Length = 706
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 602 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagc 543
Query: 70 tactgggccac 80
|||||||||||
Sbjct: 542 tactgggccac 532
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 374 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 315
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 314 cgcttccccaacggcttccccgccgagtgctcccgc 279
>gb|AV927618.1|AV927618 AV927618 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2n22 3', mRNA sequence
Length = 651
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 585 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagc 526
Query: 70 tactgggccac 80
|||||||||||
Sbjct: 525 tactgggccac 515
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 357 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 298
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 297 cgcttccccaacggcttccccgccgagtgctcccgc 262
>gb|AV930767.1|AV930767 AV930767 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25c17 3', mRNA sequence
Length = 680
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 576 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagc 517
Query: 70 tactgggccac 80
|||||||||||
Sbjct: 516 tactgggccac 506
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 348 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 289
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 288 cgcttccccaacggcttccccgccgagtgctcccgc 253
>gb|BJ446899.1|BJ446899 BJ446899 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15e10 5', mRNA sequence
Length = 652
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 74 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagc 133
Query: 70 tactgggccac 80
|||||||||||
Sbjct: 134 tactgggccac 144
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 302 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 361
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 362 cgcttccccaacggcttccccgccgagtgctcccgc 397
>gb|BJ446906.1|BJ446906 BJ446906 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15e21 5', mRNA sequence
Length = 547
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 227 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagc 286
Query: 70 tactgggccac 80
|||||||||||
Sbjct: 287 tactgggccac 297
Score = 65.9 bits (33), Expect = 2e-009
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 455 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 514
Query: 304 cgattcccgcagggcttccccgccgagtgctcc 336
|| ||||| | |||||||||||||||||||||
Sbjct: 515 cgcttccccaacggcttccccgccgagtgctcc 547
>gb|BJ447562.1|BJ447562 BJ447562 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16e21 5', mRNA sequence
Length = 648
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 217 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagc 276
Query: 70 tactgggccac 80
|||||||||||
Sbjct: 277 tactgggccac 287
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 445 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 504
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 505 cgcttccccaacggcttccccgccgagtgctcccgc 540
>gb|BJ467570.1|BJ467570 BJ467570 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25n11 3', mRNA sequence
Length = 632
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 573 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagc 514
Query: 70 tactgggccac 80
|||||||||||
Sbjct: 513 tactgggccac 503
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 345 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 286
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 285 cgcttccccaacggcttccccgccgagtgctcccgc 250
>gb|BI778147.2|BI778147 EBro07_SQ002_F18_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ002_F18 5', mRNA sequence
Length = 622
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 349 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagc 408
Query: 70 tactgggccac 80
|||||||||||
Sbjct: 409 tactgggccac 419
>emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(PM5)
Length = 1188
Score = 77.8 bits (39), Expect = 4e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggcagc 69
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 584 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagc 643
Query: 70 tactgggccac 80
|||||||||||
Sbjct: 644 tactgggccac 654
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 812 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 871
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 872 cgcttccccaacggcttccccgccgagtgctcccgc 907
>gb|BE422291.1|BE422291 HWM022cE.11r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM022cE.11, mRNA sequence
Length = 1248
Score = 75.8 bits (38), Expect = 2e-012
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 41 cggtgcacgccacgctgtgggacggcagctactgggccacgcagca 86
|||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 280 cggtgcacgcgacgctgtgggacggcagctactgggcgacgcagca 325
Score = 71.9 bits (36), Expect = 3e-011
Identities = 120/148 (81%)
Strand = Plus / Plus
Query: 186 ctcctgccccgccggcaccgaccgctggatgagccgccagctcgacgccgccgagtgggg 245
||||||||||||||||| |||| ||||||| |||| ||||||||| || |||| |
Sbjct: 425 ctcctgccccgccggcagcgacgcctggatgcaccgcgagctcgacgacggcgagctcag 484
Query: 246 caccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctggcg 305
||||||||| |||||| || |||| | | |||||||||||||| |||||| |||||
Sbjct: 485 caccgtcgcgtgggccgagcgcaactgcctctcctacaactactgcgccgacggatggcg 544
Query: 306 attcccgcagggcttccccgccgagtgc 333
||||| |||||||||||| |||||||
Sbjct: 545 cttccccaagggcttccccggcgagtgc 572
>gb|BF620985.1|BF620985 HVSMEa0003D18f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0003D18f, mRNA sequence
Length = 870
Score = 75.8 bits (38), Expect = 2e-012
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 41 cggtgcacgccacgctgtgggacggcagctactgggccacgcagca 86
|||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 613 cggtgcacgcgacgctgtgggacggcagctactgggcgacgcagca 658
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 186 ctcctgccccgccggcaccgaccgctggat 215
||||||||||||||||| ||||| ||||||
Sbjct: 759 ctcctgccccgccggcagcgacccctggat 788
>gb|AV921125.1|AV921125 AV921125 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1b10 3', mRNA sequence
Length = 664
Score = 75.8 bits (38), Expect = 2e-012
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 41 cggtgcacgccacgctgtgggacggcagctactgggccacgcagca 86
|||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 490 cggtgcacgcgacgctgtgggacggcagctactgggcgacgcagca 445
Score = 71.9 bits (36), Expect = 3e-011
Identities = 120/148 (81%)
Strand = Plus / Minus
Query: 186 ctcctgccccgccggcaccgaccgctggatgagccgccagctcgacgccgccgagtgggg 245
||||||||||||||||| |||| ||||||| |||| ||||||||| || |||| |
Sbjct: 345 ctcctgccccgccggcagcgacgcctggatgcaccgcgagctcgacgacggcgagctcag 286
Query: 246 caccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctggcg 305
||||||||| |||||| || |||| | | |||||||||||||| |||||| |||||
Sbjct: 285 caccgtcgcgtgggccgagcgcaactgcctctcctacaactactgcgccgacggatggcg 226
Query: 306 attcccgcagggcttccccgccgagtgc 333
||||| |||||||||||| |||||||
Sbjct: 225 cttccccaagggcttccccggcgagtgc 198
>gb|AV928124.1|AV928124 AV928124 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27a04 3', mRNA sequence
Length = 485
Score = 75.8 bits (38), Expect = 2e-012
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 41 cggtgcacgccacgctgtgggacggcagctactgggccacgcagca 86
|||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 319 cggtgcacgcgacgctgtgggacggcagctactgggcgacgcagca 274
Score = 71.9 bits (36), Expect = 3e-011
Identities = 120/148 (81%)
Strand = Plus / Minus
Query: 186 ctcctgccccgccggcaccgaccgctggatgagccgccagctcgacgccgccgagtgggg 245
||||||||||||||||| |||| ||||||| |||| ||||||||| || |||| |
Sbjct: 174 ctcctgccccgccggcagcgacgcctggatgcaccgcgagctcgacgacggcgagctcag 115
Query: 246 caccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctggcg 305
||||||||| |||||| || |||| | | |||||||||||||| |||||| |||||
Sbjct: 114 caccgtcgcgtgggccgagcgcaactgcctctcctacaactactgcgccgacggatggcg 55
Query: 306 attcccgcagggcttccccgccgagtgc 333
||||| |||||||||||| |||||||
Sbjct: 54 cttccccaagggcttccccggcgagtgc 27
>gb|BJ468727.1|BJ468727 BJ468727 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27a04 5', mRNA sequence
Length = 417
Score = 75.8 bits (38), Expect = 2e-012
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 41 cggtgcacgccacgctgtgggacggcagctactgggccacgcagca 86
|||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 167 cggtgcacgcgacgctgtgggacggcagctactgggcgacgcagca 212
Score = 48.1 bits (24), Expect = 4e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 186 ctcctgccccgccggcaccgaccgctggatgagccgccagctcgacgccgccgagtgggg 245
||||||||||||||||| |||| ||||||| |||| ||||||||| || |||| |
Sbjct: 312 ctcctgccccgccggcagcgacgcctggatgcaccgcgagctcgacgacggcgagctcag 371
Query: 246 caccgtcgcctgggcc 261
||||||||| ||||||
Sbjct: 372 caccgtcgcgtgggcc 387
>gb|BU972696.1|BU972696 HB22H07r BC Hordeum vulgare subsp. vulgare cDNA clone HB22H07
5-PRIME, mRNA sequence
Length = 447
Score = 75.8 bits (38), Expect = 2e-012
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 41 cggtgcacgccacgctgtgggacggcagctactgggccacgcagca 86
|||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 74 cggtgcacgcgacgctgtgggacggcagctactgggcgacgcagca 119
Score = 71.9 bits (36), Expect = 3e-011
Identities = 120/148 (81%)
Strand = Plus / Plus
Query: 186 ctcctgccccgccggcaccgaccgctggatgagccgccagctcgacgccgccgagtgggg 245
||||||||||||||||| |||| ||||||| |||| ||||||||| || |||| |
Sbjct: 219 ctcctgccccgccggcagcgacgcctggatgcaccgcgagctcgacgacggcgagctcag 278
Query: 246 caccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctggcg 305
||||||||| |||||| || |||| | | |||||||||||||| |||||| |||||
Sbjct: 279 caccgtcgcgtgggccgagcgcaactgcctctcctacaactactgcgccgacggatggcg 338
Query: 306 attcccgcagggcttccccgccgagtgc 333
||||| |||||||||||| |||||||
Sbjct: 339 cttccccaagggcttccccggcgagtgc 366
>gb|BU996830.1|BU996830 HM14O16r HM Hordeum vulgare subsp. vulgare cDNA clone HM14O16
5-PRIME, mRNA sequence
Length = 604
Score = 75.8 bits (38), Expect = 2e-012
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 41 cggtgcacgccacgctgtgggacggcagctactgggccacgcagca 86
|||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 140 cggtgcacgcgacgctgtgggacggcagctactgggcgacgcagca 185
Score = 71.9 bits (36), Expect = 3e-011
Identities = 120/148 (81%)
Strand = Plus / Plus
Query: 186 ctcctgccccgccggcaccgaccgctggatgagccgccagctcgacgccgccgagtgggg 245
||||||||||||||||| |||| ||||||| |||| ||||||||| || |||| |
Sbjct: 285 ctcctgccccgccggcagcgacgcctggatgcaccgcgagctcgacgacggcgagctcag 344
Query: 246 caccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctggcg 305
||||||||| |||||| || |||| | | |||||||||||||| |||||| |||||
Sbjct: 345 caccgtcgcgtgggccgagcgcaactgcctctcctacaactactgcgccgacggatggcg 404
Query: 306 attcccgcagggcttccccgccgagtgc 333
||||| |||||||||||| |||||||
Sbjct: 405 cttccccaagggcttccccggcgagtgc 432
>gb|CA005380.1|CA005380 HU10N24u HU Hordeum vulgare subsp. vulgare cDNA clone HU10N24
3-PRIME, mRNA sequence
Length = 551
Score = 75.8 bits (38), Expect = 2e-012
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 41 cggtgcacgccacgctgtgggacggcagctactgggccacgcagca 86
|||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 450 cggtgcacgcgacgctgtgggacggcagctactgggcgacgcagca 405
Score = 71.9 bits (36), Expect = 3e-011
Identities = 120/148 (81%)
Strand = Plus / Minus
Query: 186 ctcctgccccgccggcaccgaccgctggatgagccgccagctcgacgccgccgagtgggg 245
||||||||||||||||| |||| ||||||| |||| ||||||||| || |||| |
Sbjct: 305 ctcctgccccgccggcagcgacgcctggatgcaccgcgagctcgacgacggcgagctcag 246
Query: 246 caccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctggcg 305
||||||||| |||||| || |||| | | |||||||||||||| |||||| |||||
Sbjct: 245 caccgtcgcgtgggccgagcgcaactgcctctcctacaactactgcgccgacggatggcg 186
Query: 306 attcccgcagggcttccccgccgagtgc 333
||||| |||||||||||| |||||||
Sbjct: 185 cttccccaagggcttccccggcgagtgc 158
>gb|CK122280.1|CK122280 BES1824102l14 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010L142 5-PRIME, mRNA sequence
Length = 632
Score = 75.8 bits (38), Expect = 2e-012
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 41 cggtgcacgccacgctgtgggacggcagctactgggccacgcagca 86
|||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 165 cggtgcacgcgacgctgtgggacggcagctactgggcgacgcagca 210
Score = 71.9 bits (36), Expect = 3e-011
Identities = 120/148 (81%)
Strand = Plus / Plus
Query: 186 ctcctgccccgccggcaccgaccgctggatgagccgccagctcgacgccgccgagtgggg 245
||||||||||||||||| |||| ||||||| |||| ||||||||| || |||| |
Sbjct: 310 ctcctgccccgccggcagcgacgcctggatgcaccgcgagctcgacgacggcgagctcag 369
Query: 246 caccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctggcg 305
||||||||| |||||| || |||| | | |||||||||||||| |||||| |||||
Sbjct: 370 caccgtcgcgtgggccgagcgcaactgcctctcctacaactactgcgccgacggatggcg 429
Query: 306 attcccgcagggcttccccgccgagtgc 333
||||| |||||||||||| |||||||
Sbjct: 430 cttccccaagggcttccccggcgagtgc 457
>emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
Length = 1110
Score = 75.8 bits (38), Expect = 2e-012
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 41 cggtgcacgccacgctgtgggacggcagctactgggccacgcagca 86
|||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 591 cggtgcacgcgacgctgtgggacggcagctactgggcgacgcagca 636
Score = 71.9 bits (36), Expect = 3e-011
Identities = 120/148 (81%)
Strand = Plus / Plus
Query: 186 ctcctgccccgccggcaccgaccgctggatgagccgccagctcgacgccgccgagtgggg 245
||||||||||||||||| |||| ||||||| |||| ||||||||| || |||| |
Sbjct: 736 ctcctgccccgccggcagcgacgcctggatgcaccgcgagctcgacgacggcgagctcag 795
Query: 246 caccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctggcg 305
||||||||| |||||| || |||| | | |||||||||||||| |||||| |||||
Sbjct: 796 caccgtcgcgtgggccgagcgcaactgcctctcctacaactactgcgccgacggatggcg 855
Query: 306 attcccgcagggcttccccgccgagtgc 333
||||| |||||||||||| |||||||
Sbjct: 856 cttccccaagggcttccccggcgagtgc 883
>gb|AV931936.1|AV931936 AV931936 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26m16 3', mRNA sequence
Length = 546
Score = 73.8 bits (37), Expect = 7e-012
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 32 agcccatgtcggtgcacgccacgctgtgggacggcagctactgggccac 80
|||| ||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 516 agccgatgacggtgcacgccacgctctgggacggcagctactgggccac 468
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 309 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 250
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 249 cgcttccccaacggcttccccgccgagtgctcccgc 214
>gb|BE420888.1|BE420888 HWM003.F01 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM003.F01, mRNA sequence
Length = 861
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 211 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 270
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 271 cgcttccccaacggcttccccgccgagtgctcccgc 306
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 115 gcgcccttcgccgtctcctaccgcggctactccgccgacgcctgcgt 161
|||||||||| |||| |||||||||||||||| || ||| ||||||
Sbjct: 88 gcgcccttcgtcgtcaactaccgcggctactcctccaacggctgcgt 134
>gb|AL500476.1|AL500476 AL500476 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06M16r 3', mRNA sequence
Length = 691
Score = 71.9 bits (36), Expect = 3e-011
Identities = 120/148 (81%)
Strand = Plus / Minus
Query: 186 ctcctgccccgccggcaccgaccgctggatgagccgccagctcgacgccgccgagtgggg 245
||||||||||||||||| |||| ||||||| |||| ||||||||| || |||| |
Sbjct: 431 ctcctgccccgccggcagcgacgcctggatgcaccgcgagctcgacgacggcgagctcag 372
Query: 246 caccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctggcg 305
||||||||| |||||| || |||| | | |||||||||||||| |||||| |||||
Sbjct: 371 caccgtcgcgtgggccgagcgcaactgcctctcctacaactactgcgccgacggatggcg 312
Query: 306 attcccgcagggcttccccgccgagtgc 333
||||| |||||||||||| |||||||
Sbjct: 311 cttccccaagggcttccccggcgagtgc 284
Score = 61.9 bits (31), Expect = 3e-008
Identities = 44/47 (93%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 41 cggtgcacgccacgctgtgggac-ggcagctactgggccacgcagca 86
|||||||||| |||||||||||| |||||||||||||| ||||||||
Sbjct: 577 cggtgcacgcgacgctgtgggacgggcagctactgggcgacgcagca 531
>gb|BE194828.3|BE194828 HVSMEh0087B22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0087B22f, mRNA sequence
Length = 481
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 94 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 153
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 154 cgcttccccaacggcttccccgccgagtgctcccgc 189
>gb|AV915768.1|AV915768 AV915768 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15p03 5', mRNA sequence
Length = 526
Score = 71.9 bits (36), Expect = 3e-011
Identities = 120/148 (81%)
Strand = Plus / Plus
Query: 186 ctcctgccccgccggcaccgaccgctggatgagccgccagctcgacgccgccgagtgggg 245
||||||||||||||||| |||| ||||||| |||| ||||||||| || |||| |
Sbjct: 122 ctcctgccccgccggcagcgacgcctggatgcaccgcgagctcgacgacggcgagctcag 181
Query: 246 caccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctggcg 305
||||||||| |||||| || |||| | | |||||||||||||| |||||| |||||
Sbjct: 182 caccgtcgcgtgggccgagcgcaactgcctctcctacaactactgcgccgacggatggcg 241
Query: 306 attcccgcagggcttccccgccgagtgc 333
||||| |||||||||||| |||||||
Sbjct: 242 cttccccaagggcttccccggcgagtgc 269
>gb|AV919560.1|AV919560 AV919560 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6j18 3', mRNA sequence
Length = 418
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 356 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 297
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 296 cgcttccccaacggcttccccgccgagtgctcccgc 261
>gb|AV920882.1|AV920882 AV920882 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15p03 3', mRNA sequence
Length = 475
Score = 71.9 bits (36), Expect = 3e-011
Identities = 120/148 (81%)
Strand = Plus / Minus
Query: 186 ctcctgccccgccggcaccgaccgctggatgagccgccagctcgacgccgccgagtgggg 245
||||||||||||||||| |||| ||||||| |||| ||||||||| || |||| |
Sbjct: 367 ctcctgccccgccggcagcgacgcctggatgcaccgcgagctcgacgacggcgagctcag 308
Query: 246 caccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctggcg 305
||||||||| |||||| || |||| | | |||||||||||||| |||||| |||||
Sbjct: 307 caccgtcgcgtgggccgagcgcaactgcctctcctacaactactgcgccgacggatggcg 248
Query: 306 attcccgcagggcttccccgccgagtgc 333
||||| |||||||||||| |||||||
Sbjct: 247 cttccccaagggcttccccggcgagtgc 220
>gb|AV929296.1|AV929296 AV929296 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd11l14 3', mRNA sequence
Length = 631
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 363 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 304
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 303 cgcttccccaacggcttccccgccgagtgctcccgc 268
Score = 63.9 bits (32), Expect = 7e-009
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggc-ag 68
|||||| |||||||| || | |||| ||| |||||||||||||||| ||||||||| ||
Sbjct: 593 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcaag 534
Query: 69 ctactgggccac 80
||||||||||||
Sbjct: 533 ctactgggccac 522
>gb|AV930447.1|AV930447 AV930447 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22j07 3', mRNA sequence
Length = 650
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 334 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 275
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 274 cgcttccccaacggcttccccgccgagtgctcccgc 239
Score = 63.9 bits (32), Expect = 7e-009
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 10 gacctggcgtacccgggcgggaagcccatgtcggtgcacgccacgctgtgggacggca-g 68
|||||| |||||||| || | |||| ||| |||||||||||||||| |||||||||| |
Sbjct: 563 gacctgccgtacccgagcagccagccgatgacggtgcacgccacgctctgggacggcagg 504
Query: 69 ctactgggccac 80
||||||||||||
Sbjct: 503 ctactgggccac 492
>gb|AV930745.1|AV930745 AV930745 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25b06 3', mRNA sequence
Length = 361
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 346 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 287
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 286 cgcttccccaacggcttccccgccgagtgctcccgc 251
>gb|BJ447412.1|BJ447412 BJ447412 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35g15 5', mRNA sequence
Length = 407
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 79 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 138
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 139 cgcttccccaacggcttccccgccgagtgctcccgc 174
>gb|BJ450401.1|BJ450401 BJ450401 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak29g09 5', mRNA sequence
Length = 426
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 81 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 140
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 141 cgcttccccaacggcttccccgccgagtgctcccgc 176
>gb|BJ454898.1|BJ454898 BJ454898 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15e10 3', mRNA sequence
Length = 417
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 359 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 300
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 299 cgcttccccaacggcttccccgccgagtgctcccgc 264
>gb|BJ455314.1|BJ455314 BJ455314 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16e21 3', mRNA sequence
Length = 484
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 356 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 297
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 296 cgcttccccaacggcttccccgccgagtgctcccgc 261
>gb|BJ457816.1|BJ457816 BJ457816 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak29g09 3', mRNA sequence
Length = 412
Score = 71.9 bits (36), Expect = 3e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
|||||||||||||||||| | || |||||| |||| |||||||| ||||||||||
Sbjct: 331 ggcaccgtcgcctgggccgagagcaagtacatgtcctacgactactgcaccgacggctgg 272
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgc 339
|| ||||| | ||||||||||||||||||||||||
Sbjct: 271 cgcttccccaacggcttccccgccgagtgctcccgc 236
>gb|BU968654.1|BU968654 HB08C22r BC Hordeum vulgare subsp. vulgare cDNA clone HB08C22
5-PRIME, mRNA sequence
Length = 445
Score = 71.9 bits (36), Expect = 3e-011
Identities = 120/148 (81%)
Strand = Plus / Plus
Query: 186 ctcctgccccgccggcaccgaccgctggatgagccgccagctcgacgccgccgagtgggg 245
||||||||||||||||| |||| ||||||| |||| ||||||||| || |||| |
Sbjct: 109 ctcctgccccgccggcagcgacgcctggatgcaccgcgagctcgacgacggcgagctcag 168
Query: 246 caccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctggcg 305
||||||||| |||||| || |||| | | |||||||||||||| |||||| |||||
Sbjct: 169 caccgtcgcgtgggccgagcgcaactgcctctcctacaactactgcgccgacggatggcg 228
Query: 306 attcccgcagggcttccccgccgagtgc 333
||||| |||||||||||| |||||||
Sbjct: 229 cttccccaagggcttccccggcgagtgc 256
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 93,481
Number of Sequences: 312970
Number of extensions: 93481
Number of successful extensions: 27021
Number of sequences better than 0.5: 108
Number of HSP's better than 0.5 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26743
Number of HSP's gapped (non-prelim): 247
length of query: 712
length of database: 175,134,539
effective HSP length: 19
effective length of query: 693
effective length of database: 169,188,109
effective search space: 117247359537
effective search space used: 117247359537
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)