BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455828.2.1
(1565 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM816657.1|BM816657 HB01A11_T3.ab1 HB Hordeum vulgare su... 256 2e-066
gb|CA009093.1|CA009093 HU13C12r HU Hordeum vulgare subsp. v... 256 2e-066
gb|BF255201.2|BF255201 HVSMEf0006D16f Hordeum vulgare seedl... 250 1e-064
gb|BF618562.2|BF618562 HVSMEc0006C15f Hordeum vulgare seedl... 236 2e-060
gb|BQ763592.1|BQ763592 EBro02_SQ008_J22_R root, 3 week, hyd... 236 2e-060
gb|BF617607.2|BF617607 HVSMEc0018E10f Hordeum vulgare seedl... 220 1e-055
gb|BF626985.3|BF626985 HVSMEb0001O07f Hordeum vulgare seedl... 153 2e-035
gb|BG415566.2|BG415566 HVSMEk0007A12f Hordeum vulgare testa... 88 1e-015
gb|CA008602.1|CA008602 HU11H19r HU Hordeum vulgare subsp. v... 58 9e-007
gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene lo... 58 9e-007
gb|CA008022.1|CA008022 HU09K22r HU Hordeum vulgare subsp. v... 52 6e-005
gb|CA005208.1|CA005208 HU11H19u HU Hordeum vulgare subsp. v... 46 0.003
gb|BF262458.2|BF262458 HV_CEa0004A05f Hordeum vulgare seedl... 44 0.014
gb|CA004642.1|CA004642 HS18D24r HS Hordeum vulgare subsp. v... 44 0.014
gb|CA004788.1|CA004788 HS18L02r HS Hordeum vulgare subsp. v... 44 0.014
gb|CA022950.1|CA022950 HZ44N02r HZ Hordeum vulgare subsp. v... 44 0.014
gb|CA027083.1|CA027083 HZ57N11r HZ Hordeum vulgare subsp. v... 44 0.014
gb|BQ766671.1|BQ766671 EBro08_SQ006_E22_R root, 3 week, dro... 42 0.055
gb|CA001970.1|CA001970 HS06C07r HS Hordeum vulgare subsp. v... 42 0.055
gb|BI959890.1|BI959890 HVSMEn0022D21f Hordeum vulgare rachi... 40 0.22
gb|BF626846.3|BF626846 HVSMEb0001H24f Hordeum vulgare seedl... 40 0.22
gb|BF265463.3|BF265463 HV_CEa0012F13f Hordeum vulgare seedl... 40 0.22
gb|AV913214.1|AV913214 AV913214 K. Sato unpublished cDNA li... 40 0.22
gb|AV918507.1|AV918507 AV918507 K. Sato unpublished cDNA li... 40 0.22
gb|CA001975.1|CA001975 HS06C12r HS Hordeum vulgare subsp. v... 40 0.22
gb|CA004412.1|CA004412 HS17I05r HS Hordeum vulgare subsp. v... 40 0.22
gb|CA006570.1|CA006570 HU05B03r HU Hordeum vulgare subsp. v... 40 0.22
>gb|BM816657.1|BM816657 HB01A11_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB01A11_T3.ab1 similar to Pseudomonapepsin,, mRNA
sequence
Length = 822
Score = 256 bits (129), Expect = 2e-066
Identities = 437/539 (81%), Gaps = 3/539 (0%)
Strand = Plus / Minus
Query: 192 gcgtccttctcgtcttcgccttgctcctccttcgcgaattcctcgatcagctcccgctgt 251
|||||||| ||||| ||||| | ||| |||||| |||||||||||| ||| ||||||
Sbjct: 641 gcgtccttgtcgtcctcgcccttctcttccttctcgaattcctcgagaagcatgcgctgt 582
Query: 252 ctagacgtcaaattttcggggatgttgacattgaaatggacatattgatctccgtggtac 311
| |||||||| | ||||| ||||||||||||||||| ||||| ||||| | |
Sbjct: 581 ttctgtgtcaaattcacagggattttgacattgaaatggacgtattggtctccatatgaa 522
Query: 312 ggtgagtttcttgtcttgatcccttttcctctcagaactaccctctgaccaggttgagta 371
|||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||
Sbjct: 521 tatgagttccttgtcttgattccttttcctctcagaacaaccttctgaccaggttgagta 462
Query: 372 ccgggcttgatctttagaacaacgtctccactgagagttgggacttgaactgtccctccc 431
|| ||||| | |||||||||||| ||||| ||||||||| |||||||| || ||||||
Sbjct: 461 ccaggcttaacctttagaacaacatctcccgcgagagttggtacttgaacagtacctccc 402
Query: 432 aaaattgcctgagtcacattcaggacagcatcaacatgaatatcacctttctctcttcgg 491
| |||||||||||||||||| | ||||||||| ||||| |||||||||||||||||||||
Sbjct: 401 agaattgcctgagtcacatttaagacagcatctacatggatatcacctttctctcttcgg 342
Query: 492 aaaacaggatcctcacgaacctcgagggtcacataaagatcacctggac---ggccatct 548
|| || |||||||||||||||| | || |||||||| ||||| |||| | || |||
Sbjct: 341 aatactggatcctcacgaaccttaatggctacataaaggtcaccaggacgaagaccgtct 282
Query: 549 gggtcttctccacctgatcgaaccacctttatggtgtcctcattatccgaaccaggcagt 608
|| ||| || |||||||| || ||| || ||| ||||||| ||||| ||||||| |
Sbjct: 281 ggatctgcttgacctgatctaagcactttcatgacatcctcatcatccgtaccaggcgat 222
Query: 609 atgtcaaggcggactgatttccttccaggcacaactttgtttcctctgcatgccttgcag 668
|| |||| ||||| ||| |||| |||||||| || || || ||||||| |||||||
Sbjct: 221 atatcaatagagactgtttttattcctggcacaaccttcttccccctgcatgacttgcag 162
Query: 669 aattccttcacagttttcccagaaccaccacattttgtgcaggttgattgcatcctgaa 727
|| ||||| ||||| || ||||| |||||||| | | ||| ||||||||||| |||||
Sbjct: 161 aaatcctttacagtcttgccagatccaccacactgcgagcatgttgattgcattctgaa 103
Score = 52.0 bits (26), Expect = 6e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 751 atcctgaacccctgcaagatagacatgtttcaggtgtggttccaggaggcacaccggctc 810
|||| ||||||||||||| |||||| ||||| ||| ||||||| | ||| ||||| ||||
Sbjct: 79 atccagaacccctgcaagctagacaagtttcgggtttggttcccgcaggtacaccagctc 20
Query: 811 ca 812
||
Sbjct: 19 ca 18
>gb|CA009093.1|CA009093 HU13C12r HU Hordeum vulgare subsp. vulgare cDNA clone HU13C12
5-PRIME, mRNA sequence
Length = 380
Score = 256 bits (129), Expect = 2e-066
Identities = 272/319 (85%), Gaps = 3/319 (0%)
Strand = Plus / Minus
Query: 989 aatatcctcaaatggatttacaaaaccaccctcgaa---gccagttccgcctccgccaga 1045
|||||| ||||| |||||| ||||||| || ||||| ||||| ||| || |||||||
Sbjct: 372 aatatcttcaaaaggatttccaaaaccgccttcgaatccgccaggtccaccaccgccagc 313
Query: 1046 agcagttttctcatactgatcagggccaacctgatcatataatgatcttttttgttcatc 1105
||||| ||||||| ||||||||||||||||||||||| | | |||||||| ||||||
Sbjct: 312 agcagccctctcatattgatcagggccaacctgatcatagaccgttcttttttcttcatc 253
Query: 1106 ctttagagtctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacc 1165
||| | ||||||||||||| ||||||||||||||||| | ||||||||| ||||||||
Sbjct: 252 cttcaaagtctcataagctttctgaacctcttgaaactttctttctgcatcggcatcacc 193
Query: 1166 tttatttgtgtctggatggagcttctttgcaagcccataataggcctttttgatctccgc 1225
||||||||| ||||||||||||||||| |||||| | ||||| ||||| |||||||| |
Sbjct: 192 tttatttgtatctggatggagcttcttcgcaagcgcgtaatacgccttcttgatctcgcc 133
Query: 1226 ctggctggcgctcttgctgacgccgagcacatcgtagtagtcccttgccgccaccggcct 1285
||||| |||| ||| ||||||| ||||| |||||||||||||| |||||||| |||||
Sbjct: 132 ctggccggcgtccttcttgacgccaagcacgtcgtagtagtccctcgccgccacgggcct 73
Query: 1286 ggtcccgtggaaggacctg 1304
||||||||||||| |||||
Sbjct: 72 ggtcccgtggaagaacctg 54
>gb|BF255201.2|BF255201 HVSMEf0006D16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0006D16f, mRNA sequence
Length = 607
Score = 250 bits (126), Expect = 1e-064
Identities = 271/319 (84%), Gaps = 3/319 (0%)
Strand = Plus / Minus
Query: 989 aatatcctcaaatggatttacaaaaccaccctcgaa---gccagttccgcctccgccaga 1045
|||||| ||||| |||||| || |||| || ||||| ||||| ||| || |||||||
Sbjct: 598 aatatcttcaaaaggatttccanaaccgccttcgaatccgccaggtccaccaccgccagc 539
Query: 1046 agcagttttctcatactgatcagggccaacctgatcatataatgatcttttttgttcatc 1105
||||| ||||||| ||||||||||||||||||||||| | | |||||||| ||||||
Sbjct: 538 agcagccctctcatattgatcagggccaacctgatcatagaccgttcttttttcttcatc 479
Query: 1106 ctttagagtctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacc 1165
||| | ||||||||||||| ||||||||||||||||| | ||||||||| ||||||||
Sbjct: 478 cttcaaagtctcataagctttctgaacctcttgaaactttctttctgcatcggcatcacc 419
Query: 1166 tttatttgtgtctggatggagcttctttgcaagcccataataggcctttttgatctccgc 1225
||||||||| ||||||||||||||||| |||||| | ||||| ||||| |||||||| |
Sbjct: 418 tttatttgtatctggatggagcttcttcgcaagcgcgtaatacgccttcttgatctcgcc 359
Query: 1226 ctggctggcgctcttgctgacgccgagcacatcgtagtagtcccttgccgccaccggcct 1285
||||| |||| ||| ||||||| ||||| |||||||||||||| |||||||| |||||
Sbjct: 358 ctggccggcgtccttcttgacgccaagcacgtcgtagtagtccctcgccgccacgggcct 299
Query: 1286 ggtcccgtggaaggacctg 1304
||||||||||||| |||||
Sbjct: 298 ggtcccgtggaagaacctg 280
Score = 56.0 bits (28), Expect = 4e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1390 aggaggagagggagcggcgggcgagcaggagc 1421
||||||||||||||||||||||||| ||||||
Sbjct: 155 aggaggagagggagcggcgggcgaggaggagc 124
>gb|BF618562.2|BF618562 HVSMEc0006C15f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0006C15f, mRNA sequence
Length = 559
Score = 236 bits (119), Expect = 2e-060
Identities = 218/251 (86%)
Strand = Plus / Minus
Query: 1054 tctcatactgatcagggccaacctgatcatataatgatcttttttgttcatcctttagag 1113
||||||| || |||||||||||||||||||| | |||||||| ||||||||| | ||
Sbjct: 537 tctcatattgttcagggccaacctgatcatagcccgttcttttttcttcatccttcaaag 478
Query: 1114 tctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatttg 1173
||||||||||| |||||||||||||||||| | ||||||||| ||||||||||||||||
Sbjct: 477 tctcataagctttttgaacctcttgaaactttctttctgcatcggcatcacctttatttg 418
Query: 1174 tgtctggatggagcttctttgcaagcccataataggcctttttgatctccgcctggctgg 1233
| ||||||||||||||||| |||||| | ||||| ||||| |||||||| |||||| ||
Sbjct: 417 tatctggatggagcttcttcgcaagcgcgtaatacgccttcttgatctcgccctggccgg 358
Query: 1234 cgctcttgctgacgccgagcacatcgtagtagtcccttgccgccaccggcctggtcccgt 1293
|| ||| ||||||| ||||| |||||||||||||| |||||||| |||||||||||||
Sbjct: 357 cgtccttcttgacgccaagcacgtcgtagtagtccctcgccgccacgggcctggtcccgt 298
Query: 1294 ggaaggacctg 1304
||||| |||||
Sbjct: 297 ggaagaacctg 287
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1390 aggaggagagggagcggcgggcgagcaggagc 1421
|||||||||||||||||||||| || ||||||
Sbjct: 162 aggaggagagggagcggcgggccaggaggagc 131
>gb|BQ763592.1|BQ763592 EBro02_SQ008_J22_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_J22 5', mRNA sequence
Length = 700
Score = 236 bits (119), Expect = 2e-060
Identities = 307/369 (83%), Gaps = 3/369 (0%)
Strand = Plus / Minus
Query: 145 tggctcctaaaaccggctatccccccgatgctccagctgctgccttggcgtccttctcgt 204
|||||||||| |||||||||||| ||||| |||||||| | |||||||| ||||
Sbjct: 502 tggctcctaagaccggctatccc---gatgcgccagctgccttttccgcgtccttgtcgt 446
Query: 205 cttcgccttgctcctccttcgcgaattcctcgatcagctcccgctgtctagacgtcaaat 264
| ||||| | ||| |||||| |||||||||||| ||| |||||| | |||||||
Sbjct: 445 cctcgcccttctcttccttctcgaattcctcgagaagcatgcgctgtttctgtgtcaaat 386
Query: 265 tttcggggatgttgacattgaaatggacatattgatctccgtggtacggtgagtttcttg 324
| | || || ||||||||||||||||| ||||| ||||| | | |||||||||||
Sbjct: 385 tcacaggaattttgacattgaaatggacgtattggtctccatatgaatatgagtttcttg 326
Query: 325 tcttgatcccttttcctctcagaactaccctctgaccaggttgagtaccgggcttgatct 384
||||||| ||||||||||||||||| || ||||||||||||||||||| ||||| | ||
Sbjct: 325 tcttgattccttttcctctcagaacaactttctgaccaggttgagtaccaggcttaacct 266
Query: 385 ttagaacaacgtctccactgagagttgggacttgaactgtccctcccaaaattgcctgag 444
|||||||||| ||||| ||||||||| |||||||| || ||||||| |||||||||||
Sbjct: 265 ttagaacaacatctcccgcgagagttggtacttgaacagtacctcccagaattgcctgag 206
Query: 445 tcacattcaggacagcatcaacatgaatatcacctttctctcttcggaaaacaggatcct 504
||||||| | ||||||||| ||||| ||||||||||||||||||||||| || |||||||
Sbjct: 205 tcacatttaagacagcatctacatggatatcacctttctctcttcggaatactggatcct 146
Query: 505 cacgaacct 513
|||||||||
Sbjct: 145 cacgaacct 137
>gb|BF617607.2|BF617607 HVSMEc0018E10f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0018E10f, mRNA sequence
Length = 802
Score = 220 bits (111), Expect = 1e-055
Identities = 216/251 (86%)
Strand = Plus / Minus
Query: 1054 tctcatactgatcagggccaacctgatcatataatgatcttttttgttcatcctttagag 1113
||||||| |||||||| |||||||||||||| | | |||| ||| ||||||||| | ||
Sbjct: 526 tctcatattgatcaggcccaacctgatcatagaccgttcttgtttcttcatccttcaaag 467
Query: 1114 tctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatttg 1173
||||||||||| ||||||||||||||||| | ||||||||| |||||||||||||| |
Sbjct: 466 tctcataagctttctgaacctcttgaaactttctttctgcatcggcatcacctttattcg 407
Query: 1174 tgtctggatggagcttctttgcaagcccataataggcctttttgatctccgcctggctgg 1233
| ||||||||||||||||| |||||| | ||||| ||||| |||||||| |||||| ||
Sbjct: 406 tatctggatggagcttcttcgcaagcgcgtaatacgccttcttgatctcgccctggccgg 347
Query: 1234 cgctcttgctgacgccgagcacatcgtagtagtcccttgccgccaccggcctggtcccgt 1293
|| ||| ||||||| ||||| |||||||||||||| |||||||| |||||||||||||
Sbjct: 346 cgtccttcttgacgccaagcacgtcgtagtagtccctcgccgccacgggcctggtcccgt 287
Query: 1294 ggaaggacctg 1304
||||| |||||
Sbjct: 286 ggaagaacctg 276
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1390 aggaggagagggagcggcgggcgagcaggagc 1421
||||| ||||||||||||||||||| ||||||
Sbjct: 151 aggagtagagggagcggcgggcgaggaggagc 120
>gb|BF626985.3|BF626985 HVSMEb0001O07f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0001O07f, mRNA sequence
Length = 881
Score = 153 bits (77), Expect = 2e-035
Identities = 210/253 (83%), Gaps = 1/253 (0%)
Strand = Plus / Minus
Query: 1053 ttctcatactgatcagggccaacctgatcatataatgatcttttttgttcatcctttaga 1112
||||| || ||||||||||| ||||||||||| | ||| |||| |||||| | | |
Sbjct: 512 ttctcctattgatcagggcccacctgatcatagcccgttctcttttcttcatcgctcaca 453
Query: 1113 gtctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatc-acctttatt 1171
|||||||||||| || |||||||| |||| | | ||||||| ||||| |||||||||
Sbjct: 452 gtctcataagctttctgcacctcttgccactttcttgctgcatcggcatccacctttatt 393
Query: 1172 tgtgtctggatggagcttctttgcaagcccataataggcctttttgatctccgcctggct 1231
||| ||||||||||||||||| |||||| | ||||| ||||| |||||||| ||||||
Sbjct: 392 tgtatctggatggagcttcttcgcaagcgcgtaatacgccttcttgatctcgccctggcc 333
Query: 1232 ggcgctcttgctgacgccgagcacatcgtagtagtcccttgccgccaccggcctggtccc 1291
|||| ||| ||||||| ||||| |||||||||||||| |||||||| |||||||||||
Sbjct: 332 ggcgtccttcttgacgccaagcacgtcgtagtagtccctcgccgccacgggcctggtccc 273
Query: 1292 gtggaaggacctg 1304
||||||| |||||
Sbjct: 272 gtggaagaacctg 260
Score = 56.0 bits (28), Expect = 4e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1390 aggaggagagggagcggcgggcgagcaggagc 1421
||||||||||||||||||||||||| ||||||
Sbjct: 135 aggaggagagggagcggcgggcgaggaggagc 104
>gb|BG415566.2|BG415566 HVSMEk0007A12f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007A12f, mRNA sequence
Length = 616
Score = 87.7 bits (44), Expect = 1e-015
Identities = 178/222 (80%), Gaps = 3/222 (1%)
Strand = Plus / Minus
Query: 145 tggctcctaaaaccggctatccccccgatgctccagctgctgccttggcgtccttctcgt 204
|||||||||| |||||||||||| ||||| |||||||| | |||||||| ||||
Sbjct: 219 tggctcctaagaccggctatccc---gatgcgccagctgccttttccgcgtccttgtcgt 163
Query: 205 cttcgccttgctcctccttcgcgaattcctcgatcagctcccgctgtctagacgtcaaat 264
| ||||| | ||| |||||| |||||||||||| ||| |||||| | |||||||
Sbjct: 162 cctcgcccttctcttccttctcgaattcctcgagaagcatgcgctgtttctgtgtcaaat 103
Query: 265 tttcggggatgttgacattgaaatggacatattgatctccgtggtacggtgagtttcttg 324
| | || || ||||||||||||||||| ||||| ||||| | | |||||||||||
Sbjct: 102 tcacaggaattttgacattgaaatggacgtattggtctccatatgaatatgagtttcttg 43
Query: 325 tcttgatcccttttcctctcagaactaccctctgaccaggtt 366
||||||| ||||||||||||||||| ||| ||||||||||||
Sbjct: 42 tcttgattccttttcctctcagaacaaccttctgaccaggtt 1
>gb|CA008602.1|CA008602 HU11H19r HU Hordeum vulgare subsp. vulgare cDNA clone HU11H19
5-PRIME, mRNA sequence
Length = 476
Score = 58.0 bits (29), Expect = 9e-007
Identities = 80/97 (82%)
Strand = Plus / Minus
Query: 631 ttccaggcacaactttgtttcctctgcatgccttgcagaattccttcacagttttcccag 690
|||| |||||||| || || || ||||||| ||||||||| ||||| ||||| || ||||
Sbjct: 364 ttcctggcacaaccttcttccccctgcatgacttgcagaaatcctttacagtcttgccag 305
Query: 691 aaccaccacattttgtgcaggttgattgcatcctgaa 727
| |||||||| | | ||| ||||||||||| |||||
Sbjct: 304 atccaccacactgcgagcatgttgattgcattctgaa 268
Score = 52.0 bits (26), Expect = 6e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 751 atcctgaacccctgcaagatagacatgtttcaggtgtggttccaggaggcacaccggctc 810
|||| ||||||||||||| |||||| ||||| ||| ||||||| | ||| ||||| ||||
Sbjct: 244 atccagaacccctgcaagctagacaagtttcgggtttggttcccgcaggtacaccagctc 185
Query: 811 ca 812
||
Sbjct: 184 ca 183
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
Length = 439641
Score = 58.0 bits (29), Expect = 9e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 1203 taataggcctttttgatctccgcctggctggcgctcttgctgacgccgagcacatcgtag 1262
||||| ||||| |||||||| |||||| |||| ||| | ||| ||||||| ||||||
Sbjct: 232984 taatacgccttcttgatctcgccctggccggcgtccttcttcacgtcgagcacgtcgtag 233043
Query: 1263 tagtcccttgccgccaccggcctggtccc 1291
|||||||| ||| |||| |||||||||||
Sbjct: 233044 tagtccctcgccaccactggcctggtccc 233072
Score = 50.1 bits (25), Expect = 2e-004
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 1203 taataggcctttttgatctccgcctggctggcgctcttgctgacgccgagcacatcgtag 1262
||||| ||||| |||||||| |||||| |||| ||| | ||| ||||||| ||||||
Sbjct: 342839 taatacgccttcttgatctcgccctggccggcgtccttcttcacgtcgagcacgtcgtag 342898
Query: 1263 tagtcccttgccgccaccggcctggtccc 1291
|||||||| ||| |||| ||||||||||
Sbjct: 342899 tagtccctcgccaccactagcctggtccc 342927
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1390 aggaggagagggagcggcgggcgagcaggag 1420
|||||||||| |||||||||||||| |||||
Sbjct: 233384 aggaggagagagagcggcgggcgaggaggag 233414
Score = 40.1 bits (20), Expect = 0.22
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1390 aggaggagagggagcggcgggcgagcaggagc 1421
|||||||||| ||||||||||| || ||||||
Sbjct: 343239 aggaggagagagagcggcgggccaggaggagc 343270
>gb|CA008022.1|CA008022 HU09K22r HU Hordeum vulgare subsp. vulgare cDNA clone HU09K22
5-PRIME, mRNA sequence
Length = 307
Score = 52.0 bits (26), Expect = 6e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 751 atcctgaacccctgcaagatagacatgtttcaggtgtggttccaggaggcacaccggctc 810
|||| ||||||||||||| |||||| ||||| ||| ||||||| | ||| ||||| ||||
Sbjct: 227 atccagaacccctgcaagctagacaagtttcgggtttggttcccgcaggtacaccagctc 168
Query: 811 ca 812
||
Sbjct: 167 ca 166
>gb|CA005208.1|CA005208 HU11H19u HU Hordeum vulgare subsp. vulgare cDNA clone HU11H19
3-PRIME, mRNA sequence
Length = 453
Score = 46.1 bits (23), Expect = 0.003
Identities = 76/93 (81%), Gaps = 3/93 (3%)
Strand = Plus / Plus
Query: 145 tggctcctaaaaccggctatccccccgatgctccagctgctgccttggcgtccttctcgt 204
|||||||||| |||||||||||| ||||| |||||||| | |||||||| ||||
Sbjct: 281 tggctcctaagaccggctatccc---gatgcgccagctgccttttccgcgtccttgtcgt 337
Query: 205 cttcgccttgctcctccttcgcgaattcctcga 237
| ||||| | ||| |||||| ||||||||||||
Sbjct: 338 cctcgcccttctcttccttctcgaattcctcga 370
>gb|BF262458.2|BF262458 HV_CEa0004A05f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0004A05f, mRNA sequence
Length = 871
Score = 44.1 bits (22), Expect = 0.014
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 961 ttccaccaccgccaccgccacc 982
||||||||||||||||||||||
Sbjct: 56 ttccaccaccgccaccgccacc 77
>gb|CA004642.1|CA004642 HS18D24r HS Hordeum vulgare subsp. vulgare cDNA clone HS18D24
5-PRIME, mRNA sequence
Length = 357
Score = 44.1 bits (22), Expect = 0.014
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccac 984
||||||||||||||||||||||
Sbjct: 247 ccaccaccgccaccgccaccac 226
>gb|CA004788.1|CA004788 HS18L02r HS Hordeum vulgare subsp. vulgare cDNA clone HS18L02
5-PRIME, mRNA sequence
Length = 415
Score = 44.1 bits (22), Expect = 0.014
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccac 984
||||||||||||||||||||||
Sbjct: 247 ccaccaccgccaccgccaccac 226
>gb|CA022950.1|CA022950 HZ44N02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ44N02
5-PRIME, mRNA sequence
Length = 547
Score = 44.1 bits (22), Expect = 0.014
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 961 ttccaccaccgccaccgccacc 982
||||||||||||||||||||||
Sbjct: 23 ttccaccaccgccaccgccacc 44
>gb|CA027083.1|CA027083 HZ57N11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57N11
5-PRIME, mRNA sequence
Length = 346
Score = 44.1 bits (22), Expect = 0.014
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 961 ttccaccaccgccaccgccacc 982
||||||||||||||||||||||
Sbjct: 51 ttccaccaccgccaccgccacc 72
>gb|BQ766671.1|BQ766671 EBro08_SQ006_E22_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_E22 5', mRNA sequence
Length = 558
Score = 42.1 bits (21), Expect = 0.055
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccaccaa 987
||||||||||||||||| |||||||
Sbjct: 196 ccaccaccgccaccgccgccaccaa 220
>gb|CA001970.1|CA001970 HS06C07r HS Hordeum vulgare subsp. vulgare cDNA clone HS06C07
5-PRIME, mRNA sequence
Length = 251
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 76 ccaccgccaccgccaccacca 96
>gb|BI959890.1|BI959890 HVSMEn0022D21f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022D21f, mRNA sequence
Length = 652
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacca 986
|||||||||||||| |||||||||
Sbjct: 425 ccaccaccgccaccaccaccacca 448
>gb|BF626846.3|BF626846 HVSMEb0001H24f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0001H24f, mRNA sequence
Length = 756
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacca 986
|||||||||||||| |||||||||
Sbjct: 282 ccaccaccgccaccaccaccacca 259
>gb|BF265463.3|BF265463 HV_CEa0012F13f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0012F13f, mRNA sequence
Length = 840
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 967 caccgccaccgccaccacca 986
||||||||||||||||||||
Sbjct: 4 caccgccaccgccaccacca 23
>gb|AV913214.1|AV913214 AV913214 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21e20 5', mRNA sequence
Length = 686
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacca 986
|||||||||||||| |||||||||
Sbjct: 562 ccaccaccgccaccaccaccacca 539
>gb|AV918507.1|AV918507 AV918507 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21e20 3', mRNA sequence
Length = 603
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacca 986
|||||||||||||| |||||||||
Sbjct: 375 ccaccaccgccaccaccaccacca 398
>gb|CA001975.1|CA001975 HS06C12r HS Hordeum vulgare subsp. vulgare cDNA clone HS06C12
5-PRIME, mRNA sequence
Length = 628
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 967 caccgccaccgccaccacca 986
||||||||||||||||||||
Sbjct: 112 caccgccaccgccaccacca 131
>gb|CA004412.1|CA004412 HS17I05r HS Hordeum vulgare subsp. vulgare cDNA clone HS17I05
5-PRIME, mRNA sequence
Length = 376
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccacc 982
||||||||||||||||||||
Sbjct: 190 ccaccaccgccaccgccacc 171
>gb|CA006570.1|CA006570 HU05B03r HU Hordeum vulgare subsp. vulgare cDNA clone HU05B03
5-PRIME, mRNA sequence
Length = 540
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacca 986
|||||||||||||| |||||||||
Sbjct: 377 ccaccaccgccaccaccaccacca 354
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 219,063
Number of Sequences: 312970
Number of extensions: 219063
Number of successful extensions: 64088
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63924
Number of HSP's gapped (non-prelim): 157
length of query: 1565
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1546
effective length of database: 169,188,109
effective search space: 261564816514
effective search space used: 261564816514
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)