BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2448720.2.1
         (510 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CK125352.1|CK125352  BES1824107m07 BES1824 Hordeum vulgar...    84   5e-015
gb|BI957993.1|BI957993  HVSMEn0012L12f Hordeum vulgare rachi...    38   0.27 
gb|BQ468926.1|BQ468926  HM02N03r HM Hordeum vulgare subsp. v...    38   0.27 

>gb|CK125352.1|CK125352 BES1824107m07 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
           MPMGp2010M077 5-PRIME, mRNA sequence
          Length = 930

 Score = 83.8 bits (42), Expect = 5e-015
 Identities = 102/122 (83%)
 Strand = Plus / Plus

                                                                       
Query: 3   gtcctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatgac 62
           ||||| || ||||| |||||||| ||  |||||||| | || ||||| | ||||||| | 
Sbjct: 665 gtcctggtatcgctggacaacgtaggcatctggaatatacgtgccgagaagctggataat 724

                                                                       
Query: 63  tggtacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatcacc 122
           |||||||  ||||| ||||| |||||||| ||||| |||||||||||||||||| |||||
Sbjct: 725 tggtacaatgggcaagaggtttatgtgaaagttgctgatccactgggctacaacgtcacc 784

             
Query: 123 ga 124
           ||
Sbjct: 785 ga 786



>gb|BI957993.1|BI957993 HVSMEn0012L12f Hordeum vulgare rachis EST library HVcDNA0015
           (normal) Hordeum vulgare subsp. vulgare cDNA clone
           HVSMEn0012L12f, mRNA sequence
          Length = 874

 Score = 38.2 bits (19), Expect = 0.27
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 197 gaacagcaagtcgtcggcg 215
           |||||||||||||||||||
Sbjct: 38  gaacagcaagtcgtcggcg 56



>gb|BQ468926.1|BQ468926 HM02N03r HM Hordeum vulgare subsp. vulgare cDNA clone HM02N03
           5-PRIME, mRNA sequence
          Length = 322

 Score = 38.2 bits (19), Expect = 0.27
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 197 gaacagcaagtcgtcggcg 215
           |||||||||||||||||||
Sbjct: 67  gaacagcaagtcgtcggcg 85



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 46,636
Number of Sequences: 312970
Number of extensions: 46636
Number of successful extensions: 12702
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12697
Number of HSP's gapped (non-prelim): 4
length of query: 510
length of database: 175,134,539
effective HSP length: 18
effective length of query: 492
effective length of database: 169,501,079
effective search space: 83394530868
effective search space used: 83394530868
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)