BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448387.2.1
(919 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL510457.1|AL510457 AL510457 Hordeum vulgare Barke devel... 145 3e-033
gb|CK124865.1|CK124865 BES1824110k15 BES1824 Hordeum vulgar... 145 3e-033
gb|AL507037.1|AL507037 AL507037 Hordeum vulgare Barke devel... 111 4e-023
gb|BF625566.3|BF625566 HVSMEa0011G18f Hordeum vulgare seedl... 72 4e-011
gb|BF267536.1|BF267536 HV_CEa0018D12f Hordeum vulgare seedl... 72 4e-011
gb|AV913045.1|AV913045 AV913045 K. Sato unpublished cDNA li... 72 4e-011
gb|AV917799.1|AV917799 AV917799 K. Sato unpublished cDNA li... 72 4e-011
gb|BJ452943.1|BJ452943 BJ452943 K. Sato unpublished cDNA li... 72 4e-011
gb|BQ458859.1|BQ458859 HA04A09r HA Hordeum vulgare subsp. v... 72 4e-011
gb|BQ656562.1|BQ656562 HA04A09u HA Hordeum vulgare subsp. v... 72 4e-011
gb|BM100940.2|BM100940 EBpi01_SQ002_G20_R pistil, 1 DPA, no... 72 4e-011
gb|BI959839.1|BI959839 HVSMEn0021P10f Hordeum vulgare rachi... 66 2e-009
gb|BE454671.3|BE454671 HVSMEh0094P16f Hordeum vulgare 5-45 ... 66 2e-009
gb|BQ763608.1|BQ763608 EBro02_SQ008_M23_R root, 3 week, hyd... 66 2e-009
gb|BQ766207.1|BQ766207 EBro08_SQ005_H07_R root, 3 week, dro... 66 2e-009
gb|AV833853.1|AV833853 AV833853 K. Sato unpublished cDNA li... 60 1e-007
gb|BI956935.1|BI956935 HVSMEn0006D04f Hordeum vulgare rachi... 60 1e-007
gb|BE213865.1|BE213865 HV_CEb0001H21f Hordeum vulgare seedl... 58 5e-007
gb|BG344702.1|BG344702 HVSMEg0015E07f Hordeum vulgare pre-a... 44 0.008
gb|BF260960.2|BF260960 HVSMEf0023G08f Hordeum vulgare seedl... 40 0.13
gb|BF263471.1|BF263471 HV_CEa0006N08f Hordeum vulgare seedl... 40 0.13
gb|BM817142.1|BM817142 HC02F03_T3.ab1 HC Hordeum vulgare su... 40 0.13
gb|BI778841.2|BI778841 EBro01_SQ001_L10_R root, 3 week, hyd... 40 0.13
gb|BQ765018.1|BQ765018 EBca01_SQ005_F15_R carpel, pre-anthe... 40 0.13
gb|BQ768223.1|BQ768223 EBro08_SQ011_H04_R root, 3 week, dro... 40 0.13
gb|CA003290.1|CA003290 HS09P14r HS Hordeum vulgare subsp. v... 40 0.13
gb|CA020963.1|CA020963 HZ38K01r HZ Hordeum vulgare subsp. v... 40 0.13
>gb|AL510457.1|AL510457 AL510457 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04P21u 3',
mRNA sequence
Length = 508
Score = 145 bits (73), Expect = 3e-033
Identities = 121/137 (88%)
Strand = Plus / Minus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcgg 739
|||||||||||||| || | ||||||||||||||| |||||||||||||||||| ||||
Sbjct: 410 gcctccagctcggccggcggcacctggaagcccttgaacttgatgagctccttgacgcgg 351
Query: 740 tccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccac 799
|| |||||||| || ||| |||||||||||| ||| |||| |||||| ||||||||||||
Sbjct: 350 tcgacgatgaagacctcgtcgtcgtcgtcgacgtagccgatgtcgccggtgtggagccac 291
Query: 800 cccgcggcgtcgatggt 816
||| || ||||||||||
Sbjct: 290 ccctcgacgtcgatggt 274
>gb|CK124865.1|CK124865 BES1824110k15 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010K1510 5-PRIME, mRNA sequence
Length = 630
Score = 145 bits (73), Expect = 3e-033
Identities = 121/137 (88%)
Strand = Plus / Minus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcgg 739
|||||||||||||| || | ||||||||||||||| |||||||||||||||||| ||||
Sbjct: 359 gcctccagctcggccggcggcacctggaagcccttgaacttgatgagctccttgacgcgg 300
Query: 740 tccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccac 799
|| |||||||| || ||| |||||||||||| ||| |||| |||||| ||||||||||||
Sbjct: 299 tcgacgatgaagacctcgtcgtcgtcgtcgacgtagccgatgtcgccggtgtggagccac 240
Query: 800 cccgcggcgtcgatggt 816
||| || ||||||||||
Sbjct: 239 ccctcgacgtcgatggt 223
>gb|AL507037.1|AL507037 AL507037 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04P21T 5',
mRNA sequence
Length = 700
Score = 111 bits (56), Expect = 4e-023
Identities = 119/138 (86%), Gaps = 2/138 (1%)
Strand = Plus / Plus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcgg 739
|||||||||||||| || | ||||||||||||||| |||||||||||||||||| ||||
Sbjct: 551 gcctccagctcggccggcggcacctggaagcccttgaacttgatgagctccttgacgcgg 610
Query: 740 tccacgatgaaca-cgtcg-ccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcc 797
|| ||||| || | | ||| ||||||||||||| ||| |||| |||||| ||||||||||
Sbjct: 611 tcgacgatnaagaccttcgtccgtcgtcgtcgacgtanccgatgtcgccggtgtggagcc 670
Query: 798 accccgcggcgtcgatgg 815
||||| || |||| ||||
Sbjct: 671 acccctcgacgtcaatgg 688
>gb|BF625566.3|BF625566 HVSMEa0011G18f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011G18f, mRNA sequence
Length = 635
Score = 71.9 bits (36), Expect = 4e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
|||| |||||||||||||| || |||||||| |||||||| || ||||||||| | || |
Sbjct: 451 aggcctaccggccgtgcccgggtttcgtcgcctccggcggtcggtaccggcgctacggtc 510
Query: 61 aaagcatggacgacgt 76
| ||||||||||||||
Sbjct: 511 agagcatggacgacgt 526
>gb|BF267536.1|BF267536 HV_CEa0018D12f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018D12f, mRNA sequence
Length = 800
Score = 71.9 bits (36), Expect = 4e-011
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
|||| |||||||||||||| || |||||||| |||||||| || ||||||||| | || |
Sbjct: 340 aggcctaccggccgtgcccgggtttcgtcgcctccggcggtcggtaccggcgctacggtc 281
Query: 61 aaagcatggacgacgt 76
| ||||||||||||||
Sbjct: 280 agagcatggacgacgt 265
>gb|AV913045.1|AV913045 AV913045 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11j04 5', mRNA sequence
Length = 584
Score = 71.9 bits (36), Expect = 4e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
|||| |||||||||||||| || |||||||| |||||||| || ||||||||| | || |
Sbjct: 450 aggcctaccggccgtgcccgggtttcgtcgcctccggcggtcggtaccggcgctacggtc 509
Query: 61 aaagcatggacgacgt 76
| ||||||||||||||
Sbjct: 510 agagcatggacgacgt 525
>gb|AV917799.1|AV917799 AV917799 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11j04 3', mRNA sequence
Length = 594
Score = 71.9 bits (36), Expect = 4e-011
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
|||| |||||||||||||| || |||||||| |||||||| || ||||||||| | || |
Sbjct: 309 aggcctaccggccgtgcccgggtttcgtcgcctccggcggtcggtaccggcgctacggtc 250
Query: 61 aaagcatggacgacgt 76
| ||||||||||||||
Sbjct: 249 agagcatggacgacgt 234
>gb|BJ452943.1|BJ452943 BJ452943 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41a14 5', mRNA sequence
Length = 602
Score = 71.9 bits (36), Expect = 4e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
|||| |||||||||||||| || |||||||| |||||||| || ||||||||| | || |
Sbjct: 431 aggcctaccggccgtgcccgggtttcgtcgcctccggcggtcggtaccggcgctacggtc 490
Query: 61 aaagcatggacgacgt 76
| ||||||||||||||
Sbjct: 491 agagcatggacgacgt 506
>gb|BQ458859.1|BQ458859 HA04A09r HA Hordeum vulgare subsp. vulgare cDNA clone HA04A09
5-PRIME, mRNA sequence
Length = 349
Score = 71.9 bits (36), Expect = 4e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
|||| |||||||||||||| || |||||||| |||||||| || ||||||||| | || |
Sbjct: 33 aggcctaccggccgtgcccgggtttcgtcgcctccggcggtcggtaccggcgctacggtc 92
Query: 61 aaagcatggacgacgt 76
| ||||||||||||||
Sbjct: 93 agagcatggacgacgt 108
>gb|BQ656562.1|BQ656562 HA04A09u HA Hordeum vulgare subsp. vulgare cDNA clone HA04A09
3-PRIME, mRNA sequence
Length = 349
Score = 71.9 bits (36), Expect = 4e-011
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
|||| |||||||||||||| || |||||||| |||||||| || ||||||||| | || |
Sbjct: 317 aggcctaccggccgtgcccgggtttcgtcgcctccggcggtcggtaccggcgctacggtc 258
Query: 61 aaagcatggacgacgt 76
| ||||||||||||||
Sbjct: 257 agagcatggacgacgt 242
>gb|BM100940.2|BM100940 EBpi01_SQ002_G20_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ002_G20 5', mRNA sequence
Length = 478
Score = 71.9 bits (36), Expect = 4e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
|||| |||||||||||||| || |||||||| |||||||| || ||||||||| | || |
Sbjct: 164 aggcctaccggccgtgcccgggtttcgtcgcctccggcggtcggtaccggcgctacggtc 223
Query: 61 aaagcatggacgacgt 76
| ||||||||||||||
Sbjct: 224 agagcatggacgacgt 239
>gb|BI959839.1|BI959839 HVSMEn0021P10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021P10f, mRNA sequence
Length = 657
Score = 65.9 bits (33), Expect = 2e-009
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 679 ggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcg 738
|||||| ||||| || || || ||||||||||||||||||||||||| |||||||| |
Sbjct: 560 ggcctcnagctctgccggcgccacctggaagcccttgtacttgatgatctccttgagcct 619
Query: 739 gtccacgatgaacacgtcgccgtcgtcgtcga 770
||| || ||||| | ||| ||||||||||||
Sbjct: 620 gtcaacaatgaagatctcgtcgtcgtcgtcga 651
>gb|BE454671.3|BE454671 HVSMEh0094P16f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0094P16f, mRNA sequence
Length = 685
Score = 65.9 bits (33), Expect = 2e-009
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 674 aggatggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttg 733
|||| |||||| ||||| || || || ||||||||||||||||||||||||| |||||||
Sbjct: 470 aggagggcctcgagctctgccggcgccacctggaagcccttgtacttgatgatctccttg 411
Query: 734 atgcggtccacgatgaacacgtcgccgtcgtcgtcga 770
| | ||| || ||||| | ||| ||||||||||||
Sbjct: 410 agcctgtcaacaatgaagatctcgtcgtcgtcgtcga 374
>gb|BQ763608.1|BQ763608 EBro02_SQ008_M23_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_M23 5', mRNA sequence
Length = 590
Score = 65.9 bits (33), Expect = 2e-009
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 674 aggatggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttg 733
|||| |||||| ||||| || || || ||||||||||||||||||||||||| |||||||
Sbjct: 394 aggagggcctcgagctctgccggcgccacctggaagcccttgtacttgatgatctccttg 335
Query: 734 atgcggtccacgatgaacacgtcgccgtcgtcgtcga 770
| | ||| || ||||| | ||| ||||||||||||
Sbjct: 334 agcctgtcaacaatgaagatctcgtcgtcgtcgtcga 298
>gb|BQ766207.1|BQ766207 EBro08_SQ005_H07_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_H07 5', mRNA sequence
Length = 552
Score = 65.9 bits (33), Expect = 2e-009
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 674 aggatggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttg 733
|||| |||||| ||||| || || || ||||||||||||||||||||||||| |||||||
Sbjct: 424 aggagggcctcgagctctgccggcgccacctggaagcccttgtacttgatgatctccttg 365
Query: 734 atgcggtccacgatgaacacgtcgccgtcgtcgtcga 770
| | ||| || ||||| | ||| ||||||||||||
Sbjct: 364 agcctgtcaacaatgaagatctcgtcgtcgtcgtcga 328
>gb|AV833853.1|AV833853 AV833853 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags8m01, mRNA sequence
Length = 599
Score = 60.0 bits (30), Expect = 1e-007
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 701 acctggaagcccttgtacttgatgagctccttga 734
||||||||||||||||||||||||| ||||||||
Sbjct: 122 acctggaagcccttgtacttgatgatctccttga 89
>gb|BI956935.1|BI956935 HVSMEn0006D04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0006D04f, mRNA sequence
Length = 654
Score = 60.0 bits (30), Expect = 1e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 701 acctggaagcccttgtacttgatgagctccttgatgcggtccacgatgaacacgtcgccg 760
||||||||||||||||||||||||| |||||||| | ||| || ||||| | ||| ||
Sbjct: 536 acctggaagcccttgtacttgatgatctccttgagcctgtcaacaatgaagatctcgtcg 477
Query: 761 tcgtcgtcga 770
||||||||||
Sbjct: 476 tcgtcgtcga 467
>gb|BE213865.1|BE213865 HV_CEb0001H21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0001H21f, mRNA sequence
Length = 922
Score = 58.0 bits (29), Expect = 5e-007
Identities = 80/97 (82%)
Strand = Plus / Minus
Query: 674 aggatggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttg 733
|||| |||||| ||||| || || || |||||||||||||||||||| |||| |||||||
Sbjct: 230 aggagggcctcgagctctgccggcgccacctggaagcccttgtacttcatgatctccttg 171
Query: 734 atgcggtccacgatgaacacgtcgccgtcgtcgtcga 770
| | ||| || ||||| | ||| ||||||||||||
Sbjct: 170 agcctgtcaacaatgaagatctcgtcgtcgtcgtcga 134
>gb|BG344702.1|BG344702 HVSMEg0015E07f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0015E07f, mRNA sequence
Length = 875
Score = 44.1 bits (22), Expect = 0.008
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 709 gcccttgtacttgatgagctccttgatgcggtccacgatgaacacgtcgccgtcgtcgtc 768
||||||||||||||||| |||||||| | ||| || ||||| | ||| ||||||||||
Sbjct: 684 gcccttgtacttgatgatctccttgagcctgtcaacaatgaagatctcgtcgtcgtcgtc 625
Query: 769 ga 770
||
Sbjct: 624 ga 623
>gb|BF260960.2|BF260960 HVSMEf0023G08f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023G08f, mRNA sequence
Length = 736
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 642 cggcggcgtcctcgacggac 661
||||||||||||||||||||
Sbjct: 193 cggcggcgtcctcgacggac 212
>gb|BF263471.1|BF263471 HV_CEa0006N08f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006N08f, mRNA sequence
Length = 952
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 642 cggcggcgtcctcgacggac 661
||||||||||||||||||||
Sbjct: 212 cggcggcgtcctcgacggac 231
>gb|BM817142.1|BM817142 HC02F03_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC02F03_T3.ab1 similar to (AC004557) F17L21.8
[Arabidopsis thaliana],(AF386951) Unknown protein
[Arabidopsis thaliana],, mRNA sequence
Length = 675
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 642 cggcggcgtcctcgacggac 661
||||||||||||||||||||
Sbjct: 170 cggcggcgtcctcgacggac 189
>gb|BI778841.2|BI778841 EBro01_SQ001_L10_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ001_L10 5', mRNA sequence
Length = 417
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 610 ctcgccggcctcctcgtccg 629
||||||||||||||||||||
Sbjct: 324 ctcgccggcctcctcgtccg 305
>gb|BQ765018.1|BQ765018 EBca01_SQ005_F15_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_F15 5', mRNA sequence
Length = 495
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 610 ctcgccggcctcctcgtccg 629
||||||||||||||||||||
Sbjct: 291 ctcgccggcctcctcgtccg 272
>gb|BQ768223.1|BQ768223 EBro08_SQ011_H04_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_H04 5', mRNA sequence
Length = 423
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 610 ctcgccggcctcctcgtccg 629
||||||||||||||||||||
Sbjct: 176 ctcgccggcctcctcgtccg 157
>gb|CA003290.1|CA003290 HS09P14r HS Hordeum vulgare subsp. vulgare cDNA clone HS09P14
5-PRIME, mRNA sequence
Length = 383
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 642 cggcggcgtcctcgacggac 661
||||||||||||||||||||
Sbjct: 203 cggcggcgtcctcgacggac 222
>gb|CA020963.1|CA020963 HZ38K01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ38K01
5-PRIME, mRNA sequence
Length = 515
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 642 cggcggcgtcctcgacggac 661
||||||||||||||||||||
Sbjct: 204 cggcggcgtcctcgacggac 223
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 146,539
Number of Sequences: 312970
Number of extensions: 146539
Number of successful extensions: 47214
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47152
Number of HSP's gapped (non-prelim): 62
length of query: 919
length of database: 175,134,539
effective HSP length: 19
effective length of query: 900
effective length of database: 169,188,109
effective search space: 152269298100
effective search space used: 152269298100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)