BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441114.2.1
(964 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI960615.1|BI960615 HVSMEn0025G06f Hordeum vulgare rachi... 381 e-104
gb|BU983853.1|BU983853 HA31D22r HA Hordeum vulgare subsp. v... 359 1e-097
gb|BM443592.2|BM443592 EBro02_SQ005_M20_R root, 3 week, hyd... 355 2e-096
gb|BU985248.1|BU985248 HF06J04r HF Hordeum vulgare subsp. v... 335 2e-090
gb|BI960464.1|BI960464 HVSMEn0024L03f Hordeum vulgare rachi... 321 2e-086
gb|BF257828.2|BF257828 HVSMEf0013P18f Hordeum vulgare seedl... 317 4e-085
gb|BG301108.1|BG301108 HVSMEb0019J09f Hordeum vulgare seedl... 301 2e-080
gb|BI951506.1|BI951506 HVSMEm0001C21f Hordeum vulgare green... 299 9e-080
gb|BI960304.1|BI960304 HVSMEn0024C15f Hordeum vulgare rachi... 289 9e-077
gb|CB879366.1|CB879366 HP11O20T HP Hordeum vulgare subsp. v... 289 9e-077
gb|BG299732.1|BG299732 HVSMEa0021J11f Hordeum vulgare seedl... 287 3e-076
gb|BM442858.2|BM442858 EBro02_SQ001_J09_R root, 3 week, hyd... 285 1e-075
gb|BM374974.1|BM374974 EBma05_SQ003_O08_R maternal, 12 DPA,... 283 5e-075
gb|BQ756652.1|BQ756652 EBem09_SQ003_F19_R embryo, 1 Day ger... 281 2e-074
gb|BU980638.1|BU980638 HA21D22r HA Hordeum vulgare subsp. v... 280 8e-074
gb|BM371440.2|BM371440 EBma08_SQ002_L23_R maternal, 28 DPA,... 246 1e-063
gb|AV927067.1|AV927067 AV927067 K. Sato unpublished cDNA li... 238 3e-061
gb|BQ469266.1|BQ469266 HM03O09r HM Hordeum vulgare subsp. v... 182 1e-044
gb|BQ661537.1|BQ661537 HM03O09u HM Hordeum vulgare subsp. v... 182 1e-044
gb|BI780970.2|BI780970 EBma03_SQ001_A07_R maternal, 8 DPA, ... 182 1e-044
gb|BM440840.2|BM440840 EBca01_SQ001_F05_R carpel, pre-anthe... 174 3e-042
gb|BM374970.1|BM374970 EBma05_SQ003_O01_R maternal, 12 DPA,... 172 1e-041
gb|BG300671.1|BG300671 HVSMEb0017O17f Hordeum vulgare seedl... 127 7e-028
gb|AV911241.1|AV911241 AV911241 K. Sato unpublished cDNA li... 123 1e-026
gb|AV911423.1|AV911423 AV911423 K. Sato unpublished cDNA li... 123 1e-026
gb|AV911857.1|AV911857 AV911857 K. Sato unpublished cDNA li... 123 1e-026
gb|BG299768.1|BG299768 HVSMEa0021L17f Hordeum vulgare seedl... 115 3e-024
gb|AV909530.1|AV909530 AV909530 K. Sato unpublished cDNA li... 111 4e-023
gb|BI957748.1|BI957748 HVSMEn0011A02f Hordeum vulgare rachi... 109 2e-022
gb|AL503647.1|AL503647 AL503647 Hordeum vulgare Barke roots... 101 4e-020
gb|BG416893.2|BG416893 HVSMEk0015B16f Hordeum vulgare testa... 96 3e-018
gb|CB877294.1|CB877294 HP04E23T HP Hordeum vulgare subsp. v... 92 4e-017
gb|AV909351.1|AV909351 AV909351 K. Sato unpublished cDNA li... 90 2e-016
gb|BF260943.3|BF260943 HVSMEf0023F15f Hordeum vulgare seedl... 84 1e-014
gb|BF260484.1|BF260484 HVSMEf0022C02f Hordeum vulgare seedl... 76 2e-012
gb|BI948142.1|BI948142 HVSMEl0008F18f Hordeum vulgare spike... 76 2e-012
gb|AL501067.1|AL501067 AL501067 Hordeum vulgare Barke roots... 72 4e-011
gb|AJ435127.1|AJ435127 AJ435127 S00002 Hordeum vulgare subs... 72 4e-011
gb|AJ462473.1|AJ462473 AJ462473 S00002 Hordeum vulgare subs... 72 4e-011
gb|BM443151.2|BM443151 EBro02_SQ002_M05_R root, 3 week, hyd... 72 4e-011
gb|BM443390.2|BM443390 EBro02_SQ003_O10_R root, 3 week, hyd... 72 4e-011
gb|BF266201.2|BF266201 HV_CEa0014H09f Hordeum vulgare seedl... 70 1e-010
gb|BF621463.3|BF621463 HVSMEa0011B06f Hordeum vulgare seedl... 62 4e-008
gb|BF254992.2|BF254992 HVSMEf0005K05f Hordeum vulgare seedl... 62 4e-008
gb|BQ468061.1|BQ468061 HR01N04r HR Hordeum vulgare subsp. v... 62 4e-008
gb|BQ660284.1|BQ660284 HI01M13w HI Hordeum vulgare subsp. v... 52 3e-005
gb|BM369928.2|BM369928 EBro08_SQ002_F21_R root, 3 week, dro... 52 3e-005
gb|BG414812.2|BG414812 HVSMEk0003M24f Hordeum vulgare testa... 48 5e-004
gb|BQ460085.1|BQ460085 HA07E05r HA Hordeum vulgare subsp. v... 48 5e-004
gb|BQ657721.1|BQ657721 HA07E05u HA Hordeum vulgare subsp. v... 48 5e-004
gb|BU975019.1|BU975019 HB29N13r BC Hordeum vulgare subsp. v... 48 5e-004
gb|BU978727.1|BU978727 HA14B17r HA Hordeum vulgare subsp. v... 44 0.008
gb|CK124261.1|CK124261 BES1824108c06 BES1824 Hordeum vulgar... 44 0.008
gb|BG366911.1|BG366911 HVSMEi0008P02f Hordeum vulgare 20 DA... 42 0.033
gb|BF622781.2|BF622781 HVSMEa0008M06f Hordeum vulgare seedl... 40 0.13
gb|BM377955.2|BM377955 EBem04_SQ004_L07_R embryo, 12 DPA, n... 40 0.13
>gb|BI960615.1|BI960615 HVSMEn0025G06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025G06f, mRNA sequence
Length = 653
Score = 381 bits (192), Expect = e-104
Identities = 462/552 (83%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
|||| |||||||| ||| ||||||| |||||||| ||||||||||| ||||||| || |
Sbjct: 98 ctcccatggcggtcaaggtctacgtcgtgtactactccatgtatggtcatgttgctaagc 157
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| | ||||||||||| || |||| ||| | ||||
Sbjct: 158 tagctgatgagatcaagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggc 217
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
|||||||||| || || || ||||| ||||| |||||||| || || || ||| |||
Sbjct: 218 aggtccctgagatcctgaacgaggaagtccttggcaagatgggtgccccacccaagaccg 277
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
||||||| || ||| | || ||||| || || ||||| ||||| |||| || ||||| |
Sbjct: 278 acgtgccggtgatctcccctcaggagctggcggaggccgacggcgtcctgttcgggttcc 337
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
|||| |||||||| |||||||| || |||||||||||||||||||| || || || ||||
Sbjct: 338 cgacgaggttcggcatgatggcggcgcagatgaaggcgttcttcgacgcgacgggcgggc 397
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||||||||||||||||| || |||||||| || ||| ||||||||||||| || ||||
Sbjct: 398 tgtggagggagcagagcctggccggcaagccggcgggcgtgttcttcagcacgggcaccc 457
Query: 476 agggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggca 535
|||| || || || ||||| || |||||||| || | ||||||||||| ||||||||||
Sbjct: 458 agggcggcgggcaggagacgacgccgctgacagcagtgacccagctgacccaccacggca 517
Query: 536 tggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtcc 595
||||||| ||||| ||||| ||||| |||||||||||| |||||| ||||||| |||| |
Sbjct: 518 tggtgttcgtgccggtggggtacacgttcggcgccaagatgttcgacatggacaaggtgc 577
Query: 596 agggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagcg 655
|||| |||||||| ||||| |||||||||||||||| |||||||||||||||||| ||
Sbjct: 578 agggcggcagcccgtacggggccggcacgttcgccggggacgggtcgaggtggccgtccg 637
Query: 656 aggtggagctgg 667
|| |||||||||
Sbjct: 638 agatggagctgg 649
>gb|BU983853.1|BU983853 HA31D22r HA Hordeum vulgare subsp. vulgare cDNA clone HA31D22
5-PRIME, mRNA sequence
Length = 574
Score = 359 bits (181), Expect = 1e-097
Identities = 436/521 (83%)
Strand = Plus / Plus
Query: 115 tctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaa 174
|||||||||||||| ||| |||| || |||||||| ||||||||||| ||||| | |||
Sbjct: 47 tctccaatggcggtcaaggtctatgtcgtgtactactccatgtatggacatgtcgctaaa 106
Query: 175 ctagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatgg 234
|||||||| |||||||||||||| | | ||| ||||||||||| || ||||| ||||||
Sbjct: 107 ctagctgatgagatcaagaaaggcgtgtcatcagttgaaggtgtcgaagctaaaatatgg 166
Query: 235 caggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagccc 294
||||||||||||| |||| | || ||||| |||||||||||||| ||||| |||||||
Sbjct: 167 caggtccctgaaactctcccggaggaagtacttggaaagatgggtgcgcctcctaagctt 226
Query: 295 gacgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggttt 354
|| | ||| |||||||||| || |||||||| || || || || ||||||||||| |||
Sbjct: 227 gatgccccaatcatcacaccacaagaacttgcggacgcagatgggatcctctttggtttt 286
Query: 355 ccgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtggg 414
|| |||||||| || |||||||| || || |||||||| ||||| ||||| ||||||||
Sbjct: 287 cctacaaggtttggcatgatggctgcgcaaatgaaggcattctttgatgcaaccggtggc 346
Query: 415 ctctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaacc 474
|| |||||||||||||| || || ||||||||||| || || |||||||||||||| ||
Sbjct: 347 ctgtggagggagcagagtcttgcaggcaagcctgcgggtatcttcttcagcactggtact 406
Query: 475 cagggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggc 534
||||||||||| || ||||||||| | |||| | | || ||| |||| |||||||||
Sbjct: 407 cagggtggtgggcaggagactacagcattgacaacagtaactcagttgactcaccacggc 466
Query: 535 atggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtc 594
||||| || || ||||| || ||||||||||| ||||||||||||| ||||||| | ||
Sbjct: 467 atggttttcgttcccgtcgggtacaccttcggtgccaagctgttcgacatggacaaagtt 526
Query: 595 cagggtggcagcccctacggcgccggcacgttcgccgccga 635
|||||||||||||| |||||||| ||||| || ||||||||
Sbjct: 527 cagggtggcagcccgtacggcgcaggcacatttgccgccga 567
>gb|BM443592.2|BM443592 EBro02_SQ005_M20_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ005_M20 5', mRNA sequence
Length = 450
Score = 355 bits (179), Expect = 2e-096
Identities = 343/398 (86%)
Strand = Plus / Plus
Query: 328 gaggctgacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatg 387
||||| ||||| |||| || ||||| ||||| |||||||| |||||||| || ||||||
Sbjct: 15 gaggccgacggcgtcctgttcgggttcccgacgaggttcggcatgatggcggcgcagatg 74
Query: 388 aaggcgttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaagcct 447
|||||||||||||| || || || ||||| ||||||||||||||||| || ||||||||
Sbjct: 75 aaggcgttcttcgacgcgacgggcgggctgtggagggagcagagcctggccggcaagccg 134
Query: 448 gccggcatgttcttcagcactggaacccagggtggtggccaagagactacaccgctgacg 507
|| ||| ||||||||||||| || |||||||| || || || ||||| || ||||||||
Sbjct: 135 gcgggcgtgttcttcagcacgggcacccagggcggcgggcaggagacgacgccgctgaca 194
Query: 508 gcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggc 567
|| | ||||||||||| ||||||||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 195 gcagtgacccagctgacccaccacggcatggtgttcgtgccggtggggtacacgttcggc 254
Query: 568 gccaagctgttcggcatggaccaggtccagggtggcagcccctacggcgccggcacgttc 627
|||||| |||||| ||||||| |||| ||||| |||||||| ||||| ||||||||||||
Sbjct: 255 gccaagatgttcgacatggacaaggtgcagggcggcagcccgtacggggccggcacgttc 314
Query: 628 gccgccgacgggtcgaggtggccgagcgaggtggagctggagcacgccttccaccagggg 687
|||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 315 gccggggacgggtcgaggtggccgtcngagatggagctggagcacgccttccaccagggc 374
Query: 688 aaatacttcgcgggcatcgccaagaagctcaagggctc 725
|| |||||||| ||||||||||||||||| || |||||
Sbjct: 375 aagtacttcgccggcatcgccaagaagctgaaaggctc 412
>gb|BU985248.1|BU985248 HF06J04r HF Hordeum vulgare subsp. vulgare cDNA clone HF06J04
5-PRIME, mRNA sequence
Length = 557
Score = 335 bits (169), Expect = 2e-090
Identities = 415/497 (83%)
Strand = Plus / Plus
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
|||||||||||| |||| | || ||||| |||||||||||||| ||||| ||||||| |
Sbjct: 16 aggtccctgaaactctcccggaggaagtacttggaaagatgggtgcgcctcctaagcttg 75
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
| | ||| |||||||||| || |||||||| || || || || ||||||||||| ||||
Sbjct: 76 atgccccaatcatcacaccacaagaacttgcggacgcagatgggatcctctttggttttc 135
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| |||||||| || |||||||| || || |||||||| ||||| ||||| |||||||| |
Sbjct: 136 ctacaaggtttggcatgatggctgcgcaaatgaaggcattctttgatgcaaccggtggcc 195
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| |||||||||||||| || || ||||||||||| || || |||||||||||||| || |
Sbjct: 196 tgtggagggagcagagtcttgcaggcaagcctgcgggtatcttcttcagcactggtactc 255
Query: 476 agggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggca 535
|||||||||| || ||||||||| | |||| | | || ||| |||| ||||||||||
Sbjct: 256 agggtggtgggcaggagactacagcattgacaacagtaactcagttgactcaccacggca 315
Query: 536 tggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtcc 595
|||| || || ||||| || ||||||||||| ||||||||||||| ||||||| | || |
Sbjct: 316 tggttttcgttcccgtcgggtacaccttcggtgccaagctgttcgacatggacaaagttc 375
Query: 596 agggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagcg 655
||||||||||||| |||||||| ||||| || |||||||| || ||||||||||| |
Sbjct: 376 agggtggcagcccgtacggcgcaggcacatttgccgccgatggttcgaggtggccatctg 435
Query: 656 aggtggagctggagcacgccttccaccaggggaaatacttcgcgggcatcgccaagaagc 715
|| ||||||||||||| |||||||||||||| | || |||||||||||||| ||||| |
Sbjct: 436 agatggagctggagcatgccttccaccagggtcagtatttcgcgggcatcgcgaagaaac 495
Query: 716 tcaagggctctgcttga 732
||||||| |||||||||
Sbjct: 496 tcaagggatctgcttga 512
>gb|BI960464.1|BI960464 HVSMEn0024L03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024L03f, mRNA sequence
Length = 650
Score = 321 bits (162), Expect = 2e-086
Identities = 427/516 (82%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
|||| |||||||| ||| ||||||| |||||||| ||||||||||| ||||||| || |
Sbjct: 88 ctcccatggcggtcaaggtctacgtcgtgtactactccatgtatggtcatgttgctaagc 147
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| | ||||||||||| || |||| ||| | ||||
Sbjct: 148 tagctgatgagatcaagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggc 207
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
|||||||||| || || || ||||| ||||| |||||||| || || || ||| |||
Sbjct: 208 aggtccctgagatcctgaacgaggaagtccttggcaagatgggtgccccacccaagaccg 267
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
||||||| || ||| | || ||||| || || ||||| ||||| |||| || ||||| |
Sbjct: 268 acgtgccggtgatctcccctcaggagctggcggaggccgacggcgtcctgttcgggttcc 327
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
|||| |||||||| |||||||| || |||||||||||||||||||| || || || ||||
Sbjct: 328 cgacgaggttcggcatgatggcggcgcagatgaaggcgttcttcgacgcgacgggcgggc 387
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||||||||||||||||| || |||||||| || ||| ||||||||||||| || ||||
Sbjct: 388 tgtggagggagcagagcctggccggcaagccggcgggcgtgttcttcagcacgggcaccc 447
Query: 476 agggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggca 535
|||| || || || ||||| || |||||||| || | ||||||||||| ||||||||||
Sbjct: 448 agggcggcgggcaggagacgacgccgctgacagcagtgacccagctgacccaccacggca 507
Query: 536 tggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtcc 595
||||||| ||||| ||||| ||||| ||| |||||||| |||||| ||||||||| || |
Sbjct: 508 tggtgttcgtgccggtggggtacacgttcngcgccaagatgttcgacatggaccaagtgc 567
Query: 596 agggtggcagcccctacggcgccggcacgttcgccg 631
|||| ||| ||||||| | ||||| ||||||||||
Sbjct: 568 agggccgcancccctaccgggccgggacgttcgccg 603
>gb|BF257828.2|BF257828 HVSMEf0013P18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013P18f, mRNA sequence
Length = 850
Score = 317 bits (160), Expect = 4e-085
Identities = 400/480 (83%)
Strand = Plus / Plus
Query: 144 gtactattccatgtatgggcatgttggcaaactagctgacgagatcaagaaaggtgcctt 203
|||||| ||||||||||| ||||| | ||||||||||| |||||||||||||| | |
Sbjct: 216 gtactactccatgtatggacatgtcgctaaactagctgatgagatcaagaaaggcgtgtc 275
Query: 204 atctgttgaaggtgttgaggctaagatatggcaggtccctgaaattctctctgaagaagt 263
||| ||||||||||| || ||||| ||||||||||||||||||| |||| | || |||||
Sbjct: 276 atcagttgaaggtgtcgaagctaaaatatggcaggtccctgaaactctcccggaggaagt 335
Query: 264 gcttggaaagatgggcgcgccccctaagcccgacgtgccagtcatcacaccgcaggaact 323
|||||||||||||| ||||| ||||||| || | ||| |||||||||| || |||||
Sbjct: 336 acttggaaagatgggtgcgcctcctaagcttgatgccccaatcatcacaccacaagaact 395
Query: 324 tgcagaggctgacggtatcctctttgggtttccgacaaggttcggaatgatggcagctca 383
||| || || || || ||||||||||| ||||| |||||||| || |||||||| || ||
Sbjct: 396 tgcggacgcagatgggatcctctttggttttcctacaaggtttggcatgatggctgcgca 455
Query: 384 gatgaaggcgttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaa 443
|||||||| ||||| ||||| |||||||| || |||||||||||||| || || |||||
Sbjct: 456 aatgaaggcattctttgatgcaaccggtggcctgtggagggagcagagtcttgcaggcaa 515
Query: 444 gcctgccggcatgttcttcagcactggaacccagggtggtggccaagagactacaccgct 503
|||||| || || |||||||||||||| || ||||||||||| || ||||||||| | |
Sbjct: 516 gcctgcgggtatcttcttcagcactggtactcagggtggtgggcaggagactacagcatt 575
Query: 504 gacggcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacacctt 563
||| | | || ||| |||| |||||||||||||| || || ||||| || ||||||||
Sbjct: 576 gacaacagtaactcagttgactcaccacggcatggttttcgttcccgtcgggtacacctt 635
Query: 564 cggcgccaagctgttcggcatggaccaggtccagggtggcagcccctacggcgccggcac 623
||| ||||||||||||| ||||||| | || |||| ||||||||| |||||||| |||||
Sbjct: 636 cggtgccaagctgttcgacatggacaaagttcaggttggcagcccgtacggcgcaggcac 695
>gb|BG301108.1|BG301108 HVSMEb0019J09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019J09f, mRNA sequence
Length = 580
Score = 301 bits (152), Expect = 2e-080
Identities = 407/492 (82%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
|||| |||||||| ||| ||||||| |||||||| ||||||||||| ||||||| || |
Sbjct: 88 ctcccatggcggtcaaggtctacgtcgtgtactactccatgtatggtcatgttgctaagc 147
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| | ||||||||||| || |||| ||| | ||||
Sbjct: 148 tagctgatgagatcaagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggc 207
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
|||||||||| || || || ||||| ||||| |||||||| || || || ||| |||
Sbjct: 208 aggtccctgagatcctgaacgaggaagtccttggcaagatgggtgccccacccaagaccg 267
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
||||||| || ||| | || ||||| || || ||||| ||||| |||| || ||||| |
Sbjct: 268 acgtgccggtgatctcccctcaggagctggcggaggccgacggcgtcctgttcgggttcc 327
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
|||| |||||||| |||||||| || |||||||||||||||||||| || || || ||||
Sbjct: 328 cgacgaggttcggcatgatggcggcgcagatgaaggcgttcttcgacgcgacgggcgggc 387
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||||||||||||||||| || |||||||| || ||| ||||||||||||| || ||||
Sbjct: 388 tgtggagggagcagagcctggccggcaagccggcgggcgtgttcttcagcacgggcaccc 447
Query: 476 agggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggca 535
|||| || || || ||||| || |||||||| || | ||||||||||| ||||||||||
Sbjct: 448 agggcggcgggcaggagacgacgccgctgacagcagtgacccagctgacccaccacggca 507
Query: 536 tggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtcc 595
||| ||| ||||| ||||| ||||| |||||||||||| |||||| ||||||| | || |
Sbjct: 508 tggggttcgtgccggtggggtacacgttcggcgccaagatgttcgacatggacaatgtgc 567
Query: 596 agggtggcagcc 607
|||| |||||||
Sbjct: 568 agggcggcagcc 579
>gb|BI951506.1|BI951506 HVSMEm0001C21f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0001C21f, mRNA sequence
Length = 849
Score = 299 bits (151), Expect = 9e-080
Identities = 422/511 (82%), Gaps = 1/511 (0%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
|||| |||||||| ||| ||||||| |||||||| ||||||||||| ||||||| || |
Sbjct: 95 ctcccatggcggtcaaggtctacgtcgtgtactactccatgtatggtcatgttgctaagc 154
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| | ||||||||||| || |||| ||| | ||||
Sbjct: 155 tagctgatgagatcaagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggc 214
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
|||||||||| || || || ||||| ||||| |||||||| || || || ||| |||
Sbjct: 215 aggtccctgagatcctgaacgaggaagtccttggcaagatgggtgccccacccaagaccg 274
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
||||||| || ||| | || ||||| || || ||||| ||||| |||| || ||||| |
Sbjct: 275 acgtgccggtgatctcccctcaggagctggcggaggccgacggcgtcctgttcgggttcc 334
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
|||| |||||||| |||||||| || |||||||||||||||||||| || || || ||||
Sbjct: 335 cgacgaggttcggcatgatggcggcgcagatgaaggcgttcttcgacgcgacgggcgggc 394
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||||||||||||||||| || |||||||| || ||| ||||||||||||| || ||||
Sbjct: 395 tgtggagggagcagagcctggccggcaagccggcgggcgtgttcttcagcacgggcaccc 454
Query: 476 agggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggca 535
|||| || || || ||||| || |||||||| || | ||||||||||| ||||||||||
Sbjct: 455 agggcggcgggcaggagacgacgccgctgacagcagtgacccagctgacccaccacggca 514
Query: 536 tggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtcc 595
||||||| ||||| ||||| ||||| ||||||||| || |||||| ||||||| | || |
Sbjct: 515 tggtgttcgtgccggtggggtacacgttcggcgcccagatgttcgacatggacaaagtgc 574
Query: 596 agggtggcagcccctacggcgccggcacgtt 626
| || |||||||| | ||| |||||||||||
Sbjct: 575 aaggcggcagcccgt-cggggccggcacgtt 604
>gb|BI960304.1|BI960304 HVSMEn0024C15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024C15f, mRNA sequence
Length = 636
Score = 289 bits (146), Expect = 9e-077
Identities = 438/534 (82%), Gaps = 1/534 (0%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
|||| |||||||| ||| ||||||| |||||||| ||||||||||| ||||||| || |
Sbjct: 103 ctcccatggcggtcaaggtctacgtcgtgtactactccatgtatggtcatgttgctaagc 162
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| |||||||||||||| || | ||||||||||| || |||| ||| | ||||
Sbjct: 163 tagctgatgagatcaagaaaggggcgtcctctgttgaaggcgtggaggttaaagtgtggc 222
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
|||||||||| || || || ||||| ||||| |||||||| || || || ||| |||
Sbjct: 223 aggtccctgagatcctgaacgaggaagtccttggcaagatgggtgccccacccaagaccg 282
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
||||||| || ||| | || || || || || ||||| ||||| |||| || ||||| |
Sbjct: 283 acgtgccggtgatctcccctcatgagctggcggaggccgacggcgtcctgttcgggttcc 342
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
|||| |||||||| |||||||| || |||||||||||||||||||| || || || ||||
Sbjct: 343 cgacgaggttcggcatgatggcggcgcagatgaaggcgttcttcgacgcgacgggcgggc 402
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||||||||||||||||| || |||||||| || ||| ||||||||| ||| || ||||
Sbjct: 403 tgtggagggagcagagcctggccggcaagccggcgggcgtgttcttcatcacgggcaccc 462
Query: 476 agggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggca 535
|||| || || || ||||| || |||||||| || | ||||||||||| ||||||||||
Sbjct: 463 agggcggcgggcaggagacgacgccgctgacagcagtgacccagctgacccaccacggca 522
Query: 536 tggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggt-c 594
||||||| ||||| ||||| ||||| |||||||||||| ||||| ||||||| | || |
Sbjct: 523 tggtgttcgtgccggtggggtacacgttcggcgccaagatgttcaacatggacaaagtgc 582
Query: 595 cagggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtgg 648
||| |||||||| ||| | |||||||||||||||| |||||||| ||||||
Sbjct: 583 aaggcgggcagcccgtaccgggccggcacgttcgccggggacgggtctaggtgg 636
>gb|CB879366.1|CB879366 HP11O20T HP Hordeum vulgare subsp. vulgare cDNA clone HP11O20
5-PRIME, mRNA sequence
Length = 550
Score = 289 bits (146), Expect = 9e-077
Identities = 377/454 (83%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
|||| |||||||| ||| ||||||| |||||||| ||||||||||| ||||||| || |
Sbjct: 97 ctcccatggcggtcaaggtctacgtcgtgtactactccatgtatggtcatgttgctaagc 156
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| | ||||||||||| || |||| ||| | ||||
Sbjct: 157 tagctgatgagatcaagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggc 216
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
|||||||||| || || || ||||| ||||| ||||||||||| || || ||| |||
Sbjct: 217 aggtccctgagatcctgaacgaggaagtccttggcaagatgggcgcccctcccaagaccg 276
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
||||||| || ||| | || ||||| || || ||||| ||||| |||| || ||||| |
Sbjct: 277 acgtgccggtgatctcccctcaggagctggcggaggccgacggcgtcctgttcgggttcc 336
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
|||| |||||||| |||||||| || |||||||||||||||||||| || || || ||||
Sbjct: 337 cgacgaggttcggcatgatggcggcgcagatgaaggcgttcttcgacgcgacgggcgggc 396
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||||||||||||||||| || |||||||| || ||| ||||||||||||| || ||||
Sbjct: 397 tgtggagggagcagagcctggccggcaagccggcgggcgtgttcttcagcacgggcaccc 456
Query: 476 agggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggca 535
|||| || || || ||||| || |||||||| || | ||||||||||| ||||||||||
Sbjct: 457 agggcggcgggcaggagacgacgccgctgacagcagtgacccagctgacccaccacggca 516
Query: 536 tggtgtttgtgcccgtgggctacaccttcggcgc 569
||||||| ||||| ||||| ||||| ||||||||
Sbjct: 517 tggtgttcgtgccggtggggtacacgttcggcgc 550
>gb|BG299732.1|BG299732 HVSMEa0021J11f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0021J11f, mRNA sequence
Length = 569
Score = 287 bits (145), Expect = 3e-076
Identities = 391/473 (82%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
|||| |||||||| ||| ||||||| |||||||| ||||||||||| ||||||| || |
Sbjct: 92 ctcccatggcggtcaaggtctacgtcgtgtactactccatgtatggtcatgttgctaagc 151
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| | ||||||||||| || |||| ||| | ||||
Sbjct: 152 tagctgatgagatcaagaaaggtgcttactctgttgaaggcgtggaggttaaagtgtggc 211
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
| |||||||| || || || ||||| ||||| |||||||| || || || ||| |||
Sbjct: 212 aagtccctgagatcctgaacgaggaagtccttggcaagatgggtgccccacccaagaccg 271
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
||||||| || ||| | || ||||| || || ||||| ||||| |||| || ||||| |
Sbjct: 272 acgtgccggtgatctcccctcaggagctggcggaggccgacggcgtcctgttcgggttcc 331
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
|||| |||||||| |||||||| || |||||||||||||||||||| || || || ||||
Sbjct: 332 cgacgaggttcggcatgatggcggcgcagatgaaggcgttcttcgacgcgacgggcgggc 391
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||||||||||||||||| || |||||||| || ||| ||||||||||||| || ||||
Sbjct: 392 tgtggagggagcagagcctggccggcaagccggcgggcgtgttcttcagcacgggcaccc 451
Query: 476 agggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggca 535
|||| || || || ||||| || |||||||| || | ||||||||||| ||||||||||
Sbjct: 452 agggcggcgggcaggagacgacgccgctgacagcagtgacccagctgacccaccacggca 511
Query: 536 tggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggac 588
||||||| ||||| ||||| ||||| ||||||||| || |||||| |||||||
Sbjct: 512 tggtgttcgtgccggtggggtacacgttcggcgcccagatgttcgacatggac 564
>gb|BM442858.2|BM442858 EBro02_SQ001_J09_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ001_J09 5', mRNA sequence
Length = 507
Score = 285 bits (144), Expect = 1e-075
Identities = 264/304 (86%)
Strand = Plus / Plus
Query: 422 gggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaacccagggtg 481
||||||||||||| || |||||||| || ||| ||||||||||||| || |||||||| |
Sbjct: 1 gggagcagagcctggccggcaagccggcgggcgtgttcttcagcacgggcacccagggcg 60
Query: 482 gtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggcatggtgt 541
| || || ||||| || |||||||| || | ||||||||||| ||||||||||||||||
Sbjct: 61 gcgggcaggagacgacgccgctgacagcagtgacccagctgacccaccacggcatggtgt 120
Query: 542 ttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtccagggtg 601
| ||||| ||||| ||||| |||||||||||| |||||| ||||||| |||| ||||| |
Sbjct: 121 tcgtgccggtggggtacacgttcggcgccaagatgttcgacatggacaaggtgcagggcg 180
Query: 602 gcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagcgaggtgg 661
||||||| ||||| |||||||||||||||| |||||||||||||||||| ||| |||
Sbjct: 181 gcagcccgtacggggccggcacgttcgccggggacgggtcgaggtggccgtcggagatgg 240
Query: 662 agctggagcacgccttccaccaggggaaatacttcgcgggcatcgccaagaagctcaagg 721
||||||||||||||||||||||||| || |||||||| ||||||||||||||||| || |
Sbjct: 241 agctggagcacgccttccaccagggcaagtacttcgccggcatcgccaagaagctgaaag 300
Query: 722 gctc 725
||||
Sbjct: 301 gctc 304
>gb|BM374974.1|BM374974 EBma05_SQ003_O08_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ003_O08 5', mRNA sequence
Length = 406
Score = 283 bits (143), Expect = 5e-075
Identities = 302/355 (85%)
Strand = Plus / Plus
Query: 328 gaggctgacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatg 387
||||| ||||| |||| || ||||| ||||| |||||||| |||||||| || ||||||
Sbjct: 52 gaggccgacggcgtcctgttcgggttcccgacgaggttcggcatgatggcggcgcagatg 111
Query: 388 aaggcgttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaagcct 447
|||||||||||||| || || || ||||| ||||||||||||||||| || ||||||||
Sbjct: 112 aaggcgttcttcgacgcgacgggcgggctgtggagggagcagagcctggccggcaagccg 171
Query: 448 gccggcatgttcttcagcactggaacccagggtggtggccaagagactacaccgctgacg 507
|| ||| ||||||||||||| || |||||||| || || || ||||| || ||||||||
Sbjct: 172 gcgggcgtgttcttcagcacgggcacccagggcggcgggcaggagacgacgccgctgaca 231
Query: 508 gcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggc 567
|| | ||||||||||| ||||||||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 232 gcagtgacccagctgacccaccacggcatggtgttcgtgccggtggggtacacgttcggc 291
Query: 568 gccaagctgttcggcatggaccaggtccagggtggcagcccctacggcgccggcacgttc 627
|||||| |||||| ||||||| |||| ||||| |||||||| ||||| ||||||||||
Sbjct: 292 gccaagatgttcgacatggacaaggtgcagggcggcagcccgtacggggccggcacgtcg 351
Query: 628 gccgccgacgggtcgaggtggccgagcgaggtggagctggagcacgccttccacc 682
||| |||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 352 cccggggacgggtcgaggtggccgtcggagatggagctggagcacgccttccacc 406
>gb|BQ756652.1|BQ756652 EBem09_SQ003_F19_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ003_F19 5', mRNA sequence
Length = 433
Score = 281 bits (142), Expect = 2e-074
Identities = 322/382 (84%)
Strand = Plus / Plus
Query: 115 tctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaa 174
|||||||||||||| ||| |||| || |||||||| ||||||||||| ||||| | |||
Sbjct: 52 tctccaatggcggtcaaggtctatgtcgtgtactactccatgtatggacatgtcgctaaa 111
Query: 175 ctagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatgg 234
|||||||| |||||||||||||| | | ||| ||||||||||| || ||||| ||||||
Sbjct: 112 ctagctgatgagatcaagaaaggcgtgtcatcagttgaaggtgtcgaagctaaaatatgg 171
Query: 235 caggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagccc 294
||||||||||||| |||| | || ||||| |||||||||||||| ||||| |||||||
Sbjct: 172 caggtccctgaaactctcccggaggaagtacttggaaagatgggtgcgcctcctaagctt 231
Query: 295 gacgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggttt 354
|| | ||| |||||||||| || |||||||| || || || || ||||||||||| |||
Sbjct: 232 gatgccccaatcatcacaccacaagaacttgcggacgcagatgggatcctctttggtttt 291
Query: 355 ccgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtggg 414
|| |||||||| || |||||||| || || |||||||| ||||| ||||| ||||||||
Sbjct: 292 cctacaaggtttggcatgatggctgcgcaaatgaaggcattctttgatgcaaccggtggc 351
Query: 415 ctctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaacc 474
|| |||||||||||||| || || ||||||||||| || || |||||||||||||| ||
Sbjct: 352 ctgtggagggagcagagtcttgcaggcaagcctgcgggtatcttcttcagcactggtact 411
Query: 475 cagggtggtggccaagagacta 496
||||||||||| || |||||||
Sbjct: 412 cagggtggtgggcacgagacta 433
>gb|BU980638.1|BU980638 HA21D22r HA Hordeum vulgare subsp. vulgare cDNA clone HA21D22
5-PRIME, mRNA sequence
Length = 518
Score = 280 bits (141), Expect = 8e-074
Identities = 369/445 (82%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
|||| |||||||| ||| ||||||| |||||||| ||||||||||| ||||||| || |
Sbjct: 71 ctcccatggcggtcaaggtctacgtcgtgtactactccatgtatggtcatgttgctaagc 130
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| | ||||||||||| || |||| ||| | ||||
Sbjct: 131 tagctgatgagatcaagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggc 190
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
|||||||||| || || || ||||| ||||| ||||||||||| || || ||| |||
Sbjct: 191 aggtccctgagatcctgaacgaggaagtccttggcaagatgggcgcccctcccaagaccg 250
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
||||||| || ||| | || ||||| || || ||||| ||||| |||| || ||||| |
Sbjct: 251 acgtgccggtgatctcccctcaggagctggcggaggccgacggcgtcctgttcgggttcc 310
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
|||| |||||||| |||||||| || |||||||||||||||||||| || || || ||||
Sbjct: 311 cgacgaggttcggcatgatggcggcgcagatgaaggcgttcttcgacgcgacgggcgggc 370
Query: 416 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 475
| ||||||||||||||||| || |||||||| || ||| ||||||||||||| || ||||
Sbjct: 371 tgtggagggagcagagcctggccggcaagccggcgggcgtgttcttcagcacgggcaccc 430
Query: 476 agggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggca 535
|||| || || || ||||| || |||||||| || | ||||||||||| ||||||||||
Sbjct: 431 agggcggcgggcaggagacgacgccgctgacagcagtgacccagctgacccaccacggca 490
Query: 536 tggtgtttgtgcccgtgggctacac 560
||||||| ||||| ||||| |||||
Sbjct: 491 tggtgttcgtgccggtggggtacac 515
>gb|BM371440.2|BM371440 EBma08_SQ002_L23_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L23 5', mRNA sequence
Length = 563
Score = 246 bits (124), Expect = 1e-063
Identities = 322/388 (82%)
Strand = Plus / Plus
Query: 345 ctttgggtttccgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgc 404
|||||| ||||| |||||||| || |||||||| || || |||||||| ||||| |||||
Sbjct: 1 ctttggttttcctacaaggtttggcatgatggctgcgcaaatgaaggcattctttgatgc 60
Query: 405 caccggtgggctctggagggagcagagcctcgctggcaagcctgccggcatgttcttcag 464
|||||||| || |||||||||||||| || || ||||||||||| || || ||||||||
Sbjct: 61 aaccggtggcctgtggagggagcagagtcttgcaggcaagcctgcgggtatcttcttcag 120
Query: 465 cactggaacccagggtggtggccaagagactacaccgctgacggcgattacccagctgac 524
|||||| || ||||||||||| || ||||||||| | |||| | | || ||| ||||
Sbjct: 121 cactggtactcagggtggtgggcaggagactacagcattgacaacagtaactcagttgac 180
Query: 525 gcaccacggcatggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcggcat 584
|||||||||||||| || || ||||| || |||||||||| ||||||||||||| |||
Sbjct: 181 tcaccacggcatggttttcgttcccgtcgggtacaccttcgttgccaagctgttcgacat 240
Query: 585 ggaccaggtccagggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgag 644
|||| | || || ||||||||||| |||||||| |||| || |||||||| || |||||
Sbjct: 241 ggacaaagttcaaggtggcagcccgtacggcgcaagcacatttgccgccgatggttcgag 300
Query: 645 gtggccgagcgaggtggagctggagcacgccttccaccaggggaaatacttcgcgggcat 704
|||||| ||| ||||||||||||| ||||||||||| || | || |||||||||||
Sbjct: 301 gtggccatctgagatggagctggagcatgccttccaccatggtcagtatttcgcgggcat 360
Query: 705 cgccaagaagctcaagggctctgcttga 732
||| ||||| |||||||| |||||||||
Sbjct: 361 cgcgaagaaactcaagggatctgcttga 388
>gb|AV927067.1|AV927067 AV927067 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26j21 5', mRNA sequence
Length = 507
Score = 238 bits (120), Expect = 3e-061
Identities = 189/212 (89%)
Strand = Plus / Plus
Query: 514 acccagctgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggcgccaag 573
||||||||||| ||||||||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 18 acccagctgacccaccacggcatggtgttcgtgccggtggggtacacgttcggcgccaag 77
Query: 574 ctgttcggcatggaccaggtccagggtggcagcccctacggcgccggcacgttcgccgcc 633
|||||| ||||||| |||| ||||| |||||||| ||||| ||||||||||||||||
Sbjct: 78 atgttcgacatggacaaggtgcagggcggcagcccgtacggggccggcacgttcgccggg 137
Query: 634 gacgggtcgaggtggccgagcgaggtggagctggagcacgccttccaccaggggaaatac 693
|||||||||||||||||| ||| |||||||||||||||||||||||||||| || |||
Sbjct: 138 gacgggtcgaggtggccgtcggagatggagctggagcacgccttccaccagggcaagtac 197
Query: 694 ttcgcgggcatcgccaagaagctcaagggctc 725
||||| ||||||||||||||||| || |||||
Sbjct: 198 ttcgccggcatcgccaagaagctgaaaggctc 229
>gb|BQ469266.1|BQ469266 HM03O09r HM Hordeum vulgare subsp. vulgare cDNA clone HM03O09
5-PRIME, mRNA sequence
Length = 479
Score = 182 bits (92), Expect = 1e-044
Identities = 182/212 (85%)
Strand = Plus / Plus
Query: 521 tgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcg 580
|||| |||||||||||||| || || ||||| || ||||||||||| |||||||||||||
Sbjct: 36 tgactcaccacggcatggttttcgttcccgtcgggtacaccttcggtgccaagctgttcg 95
Query: 581 gcatggaccaggtccagggtggcagcccctacggcgccggcacgttcgccgccgacgggt 640
||||||| | || |||||||||||||| |||||||| ||||| || |||||||| || |
Sbjct: 96 acatggacaaagttcagggtggcagcccgtacggcgcaggcacatttgccgccgatggtt 155
Query: 641 cgaggtggccgagcgaggtggagctggagcacgccttccaccaggggaaatacttcgcgg 700
|||||||||| ||| ||||||||||||| |||||||||||||| | || |||||||
Sbjct: 156 cgaggtggccatctgagatggagctggagcatgccttccaccagggtcagtatttcgcgg 215
Query: 701 gcatcgccaagaagctcaagggctctgcttga 732
||||||| ||||| |||||||| |||||||||
Sbjct: 216 gcatcgcgaagaaactcaagggatctgcttga 247
>gb|BQ661537.1|BQ661537 HM03O09u HM Hordeum vulgare subsp. vulgare cDNA clone HM03O09
3-PRIME, mRNA sequence
Length = 479
Score = 182 bits (92), Expect = 1e-044
Identities = 182/212 (85%)
Strand = Plus / Minus
Query: 521 tgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcg 580
|||| |||||||||||||| || || ||||| || ||||||||||| |||||||||||||
Sbjct: 444 tgactcaccacggcatggttttcgttcccgtcgggtacaccttcggtgccaagctgttcg 385
Query: 581 gcatggaccaggtccagggtggcagcccctacggcgccggcacgttcgccgccgacgggt 640
||||||| | || |||||||||||||| |||||||| ||||| || |||||||| || |
Sbjct: 384 acatggacaaagttcagggtggcagcccgtacggcgcaggcacatttgccgccgatggtt 325
Query: 641 cgaggtggccgagcgaggtggagctggagcacgccttccaccaggggaaatacttcgcgg 700
|||||||||| ||| ||||||||||||| |||||||||||||| | || |||||||
Sbjct: 324 cgaggtggccatctgagatggagctggagcatgccttccaccagggtcagtatttcgcgg 265
Query: 701 gcatcgccaagaagctcaagggctctgcttga 732
||||||| ||||| |||||||| |||||||||
Sbjct: 264 gcatcgcgaagaaactcaagggatctgcttga 233
>gb|BI780970.2|BI780970 EBma03_SQ001_A07_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ001_A07 5', mRNA sequence
Length = 394
Score = 182 bits (92), Expect = 1e-044
Identities = 257/312 (82%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
|||| |||||||| ||| ||||||| |||||||| ||||||||||| ||||||| || |
Sbjct: 83 ctcccatggcggtcaaggtctacgtcgtgtactactccatgtatggtcatgttgctaagc 142
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| | ||||||||||| || |||| ||| | ||||
Sbjct: 143 tagctgatgagatcaagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggc 202
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
|||||||||| || || || ||||| ||||| ||||||||||| || || ||| |||
Sbjct: 203 aggtccctgagatcctgaacgaggaagtccttggcaagatgggcgcccctcccaagaccg 262
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
||||||| || ||| | || ||||| || || ||||| ||||| |||| || ||||| |
Sbjct: 263 acgtgccggtgatctcccctcaggagctggcggaggccgacggcgtcctgttcgggttcc 322
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
|||| |||||||| |||||||| || |||||||||||||||||||| || || || ||||
Sbjct: 323 cgacgaggttcggcatgatggcggcgcagatgaaggcgttcttcgacgcgacgggcgggc 382
Query: 416 tctggagggagc 427
| ||||||||||
Sbjct: 383 tgtggagggagc 394
>gb|BM440840.2|BM440840 EBca01_SQ001_F05_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ001_F05 5', mRNA sequence
Length = 330
Score = 174 bits (88), Expect = 3e-042
Identities = 181/212 (85%)
Strand = Plus / Plus
Query: 521 tgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggcgccaagctgttcg 580
|||| |||||||||||||| || || ||||| || ||||||||||| |||||||||||||
Sbjct: 19 tgactcaccacggcatggttttcgttcccgtcgggtacaccttcggtgccaagctgttcg 78
Query: 581 gcatggaccaggtccagggtggcagcccctacggcgccggcacgttcgccgccgacgggt 640
||||||| | || |||||||||||||| |||||||| ||||| || |||||||| || |
Sbjct: 79 acatggacaaagttcagggtggcagcccgtacggcgcaggcacatttgccgccgatggtt 138
Query: 641 cgaggtggccgagcgaggtggagctggagcacgccttccaccaggggaaatacttcgcgg 700
|||||||||| ||| ||||||||||||| |||||||||||||| | || |||||||
Sbjct: 139 cgaggtggccatctgagatggagctggagcatgccttccaccagggtcagtatttcgcgg 198
Query: 701 gcatcgccaagaagctcaagggctctgcttga 732
||||||| || || |||||||| |||||||||
Sbjct: 199 gcatcgcgaaaaaactcaagggatctgcttga 230
>gb|BM374970.1|BM374970 EBma05_SQ003_O01_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ003_O01 5', mRNA sequence
Length = 289
Score = 172 bits (87), Expect = 1e-041
Identities = 229/275 (83%), Gaps = 1/275 (0%)
Strand = Plus / Plus
Query: 293 ccgacgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggt 352
|||||||||| || ||| | || ||||| || || ||||| ||||| |||| || ||||
Sbjct: 15 ccgacgtgccggtgatctcccctcaggagctggcggaggccgacggcgtcctgttcgggt 74
Query: 353 ttccgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtg 412
| ||||| |||||||| |||||||| || |||||||||||||||||||| || || || |
Sbjct: 75 tcccgacgaggttcggcatgatggcggcgcagatgaaggcgttcttcgacgcgacgggcg 134
Query: 413 ggctctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaa 472
|||| ||||||||||||||||| || |||||||| || ||| ||||||||||||| || |
Sbjct: 135 ggctgtggagggagcagagcctggccggcaagccggcgggcgtgttcttcagcacgggca 194
Query: 473 cc-cagggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccac 531
|| ||||| || || || ||||| || |||||||| || | ||||||||||| ||||||
Sbjct: 195 cctcagggcggcgggcaggagacgacgccgctgacagcagtgacccagctgacccaccac 254
Query: 532 ggcatggtgtttgtgcccgtgggctacaccttcgg 566
||||||||||| ||||| ||||| ||||| |||||
Sbjct: 255 ggcatggtgttcgtgccggtggggtacacgttcgg 289
>gb|BG300671.1|BG300671 HVSMEb0017O17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017O17f, mRNA sequence
Length = 955
Score = 127 bits (64), Expect = 7e-028
Identities = 262/328 (79%)
Strand = Plus / Plus
Query: 116 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 175
|||| |||||||| ||| ||||| | |||||||| ||||||||||| ||||||| || |
Sbjct: 90 ctcccatggcggtcaaggtctacatcgtgtactactccatgtatggtcatgttgctaagc 149
Query: 176 tagctgacgagatcaagaaaggtgccttatctgttgaaggtgttgaggctaagatatggc 235
||||||| ||||||||||||||||| | ||||||||||| || |||| ||| | ||||
Sbjct: 150 tagctgatgagatcaagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggc 209
Query: 236 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 295
| |||||||| || || || ||||| ||||| |||||||| || || || ||| |||
Sbjct: 210 aagtccctgagatcctgaacgaggaagtccttggcaagatgggtgccccacccaagaccg 269
Query: 296 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggtttc 355
||||||| || ||| | || ||||| || || ||||| ||||| |||| || |||| |
Sbjct: 270 acgtgccggtgatctcccctcaggagctggcggaggccgacggcgtcctgttccggttcc 329
Query: 356 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 415
| |||||||| || |||||||| || || ||||||||||||||| | || || | ||||
Sbjct: 330 caacaaggtttggcatgatggcggcgcacatgaaggcgttcttcaacgctactgtcgggc 389
Query: 416 tctggagggagcagagcctcgctggcaa 443
| |||| |||||||||||| || |||||
Sbjct: 390 tgtggatggagcagagcctggccggcaa 417
>gb|AV911241.1|AV911241 AV911241 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12i08 3', mRNA sequence
Length = 349
Score = 123 bits (62), Expect = 1e-026
Identities = 119/138 (86%)
Strand = Plus / Minus
Query: 595 cagggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagc 654
|||||||||||||| |||||||| ||||| || |||||||| || |||||||||||
Sbjct: 341 cagggtggcagcccgtacggcgcaggcacatttgccgccgatggttcgaggtggccatct 282
Query: 655 gaggtggagctggagcacgccttccaccaggggaaatacttcgcgggcatcgccaagaag 714
||| ||||||||||||| |||||||||||||| | || |||||||||||||| |||||
Sbjct: 281 gagatggagctggagcatgccttccaccagggtcagtatttcgcgggcatcgcgaagaaa 222
Query: 715 ctcaagggctctgcttga 732
|||||||| |||||||||
Sbjct: 221 ctcaagggatctgcttga 204
>gb|AV911423.1|AV911423 AV911423 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak13c09 3', mRNA sequence
Length = 293
Score = 123 bits (62), Expect = 1e-026
Identities = 119/138 (86%)
Strand = Plus / Minus
Query: 595 cagggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagc 654
|||||||||||||| |||||||| ||||| || |||||||| || |||||||||||
Sbjct: 285 cagggtggcagcccgtacggcgcaggcacatttgccgccgatggttcgaggtggccatct 226
Query: 655 gaggtggagctggagcacgccttccaccaggggaaatacttcgcgggcatcgccaagaag 714
||| ||||||||||||| |||||||||||||| | || |||||||||||||| |||||
Sbjct: 225 gagatggagctggagcatgccttccaccagggtcagtatttcgcgggcatcgcgaagaaa 166
Query: 715 ctcaagggctctgcttga 732
|||||||| |||||||||
Sbjct: 165 ctcaagggatctgcttga 148
>gb|AV911857.1|AV911857 AV911857 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak1m15 3', mRNA sequence
Length = 310
Score = 123 bits (62), Expect = 1e-026
Identities = 119/138 (86%)
Strand = Plus / Minus
Query: 595 cagggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagc 654
|||||||||||||| |||||||| ||||| || |||||||| || |||||||||||
Sbjct: 302 cagggtggcagcccgtacggcgcaggcacatttgccgccgatggttcgaggtggccatct 243
Query: 655 gaggtggagctggagcacgccttccaccaggggaaatacttcgcgggcatcgccaagaag 714
||| ||||||||||||| |||||||||||||| | || |||||||||||||| |||||
Sbjct: 242 gagatggagctggagcatgccttccaccagggtcagtatttcgcgggcatcgcgaagaaa 183
Query: 715 ctcaagggctctgcttga 732
|||||||| |||||||||
Sbjct: 182 ctcaagggatctgcttga 165
>gb|BG299768.1|BG299768 HVSMEa0021L17f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0021L17f, mRNA sequence
Length = 572
Score = 115 bits (58), Expect = 3e-024
Identities = 241/302 (79%)
Strand = Plus / Plus
Query: 328 gaggctgacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatg 387
||||| ||||| ||||| || || |||||||| ||||||| |||||||| || ||||||
Sbjct: 264 gaggccgacggcatcctgttcggctttccgacgcggttcggcatgatggcggcgcagatg 323
Query: 388 aaggcgttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaagcct 447
||||| |||||||| ||||||| || |||||| || |||||||||| | || |||||
Sbjct: 324 aaggccttcttcgactccaccggcggcctctggcaggcgcagagcctctcgggaaagccc 383
Query: 448 gccggcatgttcttcagcactggaacccagggtggtggccaagagactacaccgctgacg 507
|| ||| | |||||| ||| || |||||||| || || || ||||| || | || |||
Sbjct: 384 gcgggcgtcttcttcgccacgggcacccagggcggcgggcaggagaccacggccctcacg 443
Query: 508 gcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggc 567
|| | |||||||||||||| ||||||||| |||| ||||| || || ||||| ||||
Sbjct: 444 gccgtgacccagctgacgcatcacggcatgctgttcgtgccggtcgggtacacgcacggc 503
Query: 568 gccaagctgttcggcatggaccaggtccagggtggcagcccctacggcgccggcacgttc 627
||| |||||| ||||||| ||||| |||| |||||||| ||||| |||||||| |||
Sbjct: 504 gccggcatgttcgccatggacgaggtcaagggcggcagcccgtacggtgccggcaccttc 563
Query: 628 gc 629
||
Sbjct: 564 gc 565
>gb|AV909530.1|AV909530 AV909530 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak13c09 5', mRNA sequence
Length = 361
Score = 111 bits (56), Expect = 4e-023
Identities = 115/135 (85%)
Strand = Plus / Plus
Query: 598 ggtggcagcccctacggcgccggcacgttcgccgccgacgggtcgaggtggccgagcgag 657
||||||||||| |||||||| ||||| || |||||||| || ||||||||||| |||
Sbjct: 1 ggtggcagcccgtacggcgcaggcacatttgccgccgatggttcgaggtggccatctgag 60
Query: 658 gtggagctggagcacgccttccaccaggggaaatacttcgcgggcatcgccaagaagctc 717
|||||||||||| |||||||||||||| | || |||||||||||||| ||||| |||
Sbjct: 61 naggagctggagcatgccttccaccagggtcagtatttcgcgggcatcgcgaagaaactc 120
Query: 718 aagggctctgcttga 732
||||| |||||||||
Sbjct: 121 aagggatctgcttga 135
>gb|BI957748.1|BI957748 HVSMEn0011A02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0011A02f, mRNA sequence
Length = 886
Score = 109 bits (55), Expect = 2e-022
Identities = 136/163 (83%)
Strand = Plus / Minus
Query: 560 ccttcggcgccaagctgttcggcatggaccaggtccagggtggcagcccctacggcgccg 619
||||||| ||||| ||||||| ||||||| | || |||||||||||||| |||||||| |
Sbjct: 383 ccttcggtgccaacctgttcgacatggacaaagttcagggtggcagcccgtacggcgcag 324
Query: 620 gcacgttcgccgccgacgggtcgaggtggccgagcgaggtggagctggagcacgccttcc 679
|||| || ||||||| || ||||||||||| ||| ||||||||||||| ||| |||
Sbjct: 323 gcacatttcccgccgatggttcgaggtggccatctgagatggagctggagcatgccctcc 264
Query: 680 accaggggaaatacttcgcgggcatcgccaagaagctcaaggg 722
|||||| | || |||||||||||||| ||||| ||||||||
Sbjct: 263 cccagggtcagtatttcgcgggcatcgcgaagaaactcaaggg 221
>gb|AL503647.1|AL503647 AL503647 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02O22T 5', mRNA sequence
Length = 700
Score = 101 bits (51), Expect = 4e-020
Identities = 241/303 (79%), Gaps = 1/303 (0%)
Strand = Plus / Plus
Query: 328 gaggctgacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatg 387
||||| ||||| ||||| || || |||||||| ||||||| |||||||| || ||||||
Sbjct: 268 gaggccgacggcatcctgttcggctttccgacgcggttcggcatgatggcggcgcagatg 327
Query: 388 aaggcgttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaagcct 447
||||| |||||||| ||||||| || |||||| || |||||||||| | || |||||
Sbjct: 328 aaggccttcttcgactccaccggcggcctctggcaggcgcagagcctctcgggaaagccc 387
Query: 448 gccggca-tgttcttcagcactggaacccagggtggtggccaagagactacaccgctgac 506
|| ||| | |||||| ||| || |||||||| || || || ||||| || | || ||
Sbjct: 388 gcgggccgtcttcttcgccacgggcacccagggcggcgggcaggagaccacggccctcac 447
Query: 507 ggcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcgg 566
||| | |||||||||||||| ||||||||| |||| ||||| || || ||||| |||
Sbjct: 448 ggccgtgacccagctgacgcatcacggcatgctgttcgtgccggtcgggtacacgcacgg 507
Query: 567 cgccaagctgttcggcatggaccaggtccagggtggcagcccctacggcgccggcacgtt 626
|||| |||||| ||||||| ||||| |||| |||||||| ||||| |||||||| ||
Sbjct: 508 cgccggcatgttcgccatggacgaggtcaagggcggcagcccgtacggtgccggcacctt 567
Query: 627 cgc 629
|||
Sbjct: 568 cgc 570
Score = 42.1 bits (21), Expect = 0.033
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 679 caccaggggaaatacttcgcgggcatcgccaagaagctcaa 719
|||||||| || ||||| || ||||| ||||||||||||||
Sbjct: 625 caccagggcaagtactttgccggcattgccaagaagctcaa 665
>gb|BG416893.2|BG416893 HVSMEk0015B16f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0015B16f, mRNA sequence
Length = 366
Score = 95.6 bits (48), Expect = 3e-018
Identities = 102/120 (85%)
Strand = Plus / Plus
Query: 613 ggcgccggcacgttcgccgccgacgggtcgaggtggccgagcgaggtggagctggagcac 672
||||| ||||| || |||||||| || ||||||||||| ||| |||||||||||||
Sbjct: 1 ggcgcaggcacatttgccgccgatggttcgaggtggccatctgagatggagctggagcat 60
Query: 673 gccttccaccaggggaaatacttcgcgggcatcgccaagaagctcaagggctctgcttga 732
|||||||||||||| | || |||||||||||||| ||||| |||||||| |||||||||
Sbjct: 61 gccttccaccagggtcagtatttcgcgggcatcgcgaagaaactcaagggatctgcttga 120
>gb|CB877294.1|CB877294 HP04E23T HP Hordeum vulgare subsp. vulgare cDNA clone HP04E23
5-PRIME, mRNA sequence
Length = 606
Score = 91.7 bits (46), Expect = 4e-017
Identities = 238/302 (78%)
Strand = Plus / Plus
Query: 328 gaggctgacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatg 387
||||| ||||| ||||| || || |||||||| ||||||| |||||||| || ||||||
Sbjct: 274 gaggccgacggcatcctgttcggctttccgacgcggttcggcatgatggcggcgcagatg 333
Query: 388 aaggcgttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaagcct 447
||||| |||||||| ||||||| || |||||| || |||||||||| | || |||||
Sbjct: 334 aaggccttcttcgactccaccggcggcctctggcaggcgcagagcctctcgggaaagccc 393
Query: 448 gccggcatgttcttcagcactggaacccagggtggtggccaagagactacaccgctgacg 507
|| ||| | |||||| ||| || |||||||| || || || ||||| || | || |||
Sbjct: 394 gcgggcgtcttcttcgccacgggcacccagggcggcgggcaggagaccacggccctcacg 453
Query: 508 gcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggc 567
| | |||||||||||| ||||||||| |||| ||||| || || ||||| ||||
Sbjct: 454 ggccgtgaccagctgacgcatcacggcatgctgttcgtgccggtcgggtacacgcacggc 513
Query: 568 gccaagctgttcggcatggaccaggtccagggtggcagcccctacggcgccggcacgttc 627
||| |||||| ||||||| ||||| |||| |||||||| ||||| |||||||| |||
Sbjct: 514 gccggcatgttcgccatggacgaggtcaagggcggcagcccgtacggtgccggcaccttc 573
Query: 628 gc 629
||
Sbjct: 574 gc 575
>gb|AV909351.1|AV909351 AV909351 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12i08 5', mRNA sequence
Length = 145
Score = 89.7 bits (45), Expect = 2e-016
Identities = 90/105 (85%)
Strand = Plus / Plus
Query: 628 gccgccgacgggtcgaggtggccgagcgaggtggagctggagcacgccttccaccagggg 687
|||||||| || ||||||||||| ||| ||||||||||||| ||||||||||||||
Sbjct: 4 gccgccgatggttcgaggtggccatctgagatggagctggagcatgccttccaccagggt 63
Query: 688 aaatacttcgcgggcatcgccaagaagctcaagggctctgcttga 732
| || |||||||||||||| ||||| |||||||| |||||||||
Sbjct: 64 cagtatttcgcgggcatcgcgaagaaactcaagggatctgcttga 108
>gb|BF260943.3|BF260943 HVSMEf0023F15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023F15f, mRNA sequence
Length = 558
Score = 83.8 bits (42), Expect = 1e-014
Identities = 213/270 (78%)
Strand = Plus / Plus
Query: 362 ggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggctctgga 421
||||||| |||||||| || ||||||||||| |||||||| |||| || || ||||||
Sbjct: 10 ggttcggcatgatggcggcgcagatgaaggccttcttcgactccacgggcggcctctggc 69
Query: 422 gggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaacccagggtg 481
|| |||| |||||| |||||||| || ||| | |||||| ||| || || ||||| |
Sbjct: 70 aggcgcagtccctcgccggcaagccggcgggcgtcttcttcgccacgggcacgcagggcg 129
Query: 482 gtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggcatggtgt 541
| ||||| ||||| || | || ||||| | || ||||| ||||||||||||||| | |
Sbjct: 130 gcggccaggagaccacggccctcacggccgtcacgcagctcacgcaccacggcatgctct 189
Query: 542 ttgtgcccgtgggctacaccttcggcgccaagctgttcggcatggaccaggtccagggtg 601
| |||||||| |||||||| ||||||| |||||| | | ||| ||||| |||| |
Sbjct: 190 tcgtgcccgtcggctacacgcacggcgccggcatgttcgccgtcgacgaggtcaagggcg 249
Query: 602 gcagcccctacggcgccggcacgttcgccg 631
||||||| ||||| |||||||| |||||||
Sbjct: 250 gcagcccgtacggggccggcaccttcgccg 279
Score = 61.9 bits (31), Expect = 4e-008
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 679 caccaggggaaatacttcgcgggcatcgccaagaagctcaagg 721
||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct: 330 caccaggggaagtacttcgccggcgtcgccaagaagctcaagg 372
>gb|BF260484.1|BF260484 HVSMEf0022C02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022C02f, mRNA sequence
Length = 851
Score = 75.8 bits (38), Expect = 2e-012
Identities = 164/206 (79%)
Strand = Plus / Plus
Query: 328 gaggctgacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatg 387
||||| ||||| ||||| || || |||||||| ||||||| |||||||| || ||||||
Sbjct: 432 gaggccgacggcatcctgttcggctttccgacgcggttcggcatgatggcggcgcagatg 491
Query: 388 aaggcgttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaagcct 447
||||| |||||||| ||||||| || |||||| || |||||||||| | || |||||
Sbjct: 492 aaggccttcttcgactccaccggcggcctctggcaggcgcagagcctctcgggaaagccc 551
Query: 448 gccggcatgttcttcagcactggaacccagggtggtggccaagagactacaccgctgacg 507
|| ||| | |||||| ||| || |||||||| || || || ||||| || | || |||
Sbjct: 552 gcgggcgtcttcttcgccacgggcacccagggcggcgggcaggagaccacggccctcacg 611
Query: 508 gcgattacccagctgacgcaccacgg 533
|| | |||||||||||||| |||||
Sbjct: 612 gccgtgacccagctgacgcatcacgg 637
>gb|BI948142.1|BI948142 HVSMEl0008F18f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0008F18f, mRNA sequence
Length = 1037
Score = 75.8 bits (38), Expect = 2e-012
Identities = 152/190 (80%)
Strand = Plus / Plus
Query: 362 ggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggctctgga 421
||||||| |||||||| || ||||||||||| ||||| || |||| || || ||||||
Sbjct: 315 ggttcggcatgatggccgcgcagatgaaggccttctttgactccacaggcggcctctggc 374
Query: 422 gggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaacccagggtg 481
| ||||| |||||| |||||||| || | | | |||||| ||| || |||||||| |
Sbjct: 375 agcagcagtccctcgccggcaagcccgcggccgttttcttcgccacgggcacccagggcg 434
Query: 482 gtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggcatggtgt 541
| ||||| ||||| ||| |||| || || | || ||||||||||||||||||||| |||
Sbjct: 435 gcggccaggagaccacagcgctcaccgccgtgacgcagctgacgcaccacggcatgctgt 494
Query: 542 ttgtgcccgt 551
| ||||||||
Sbjct: 495 tcgtgcccgt 504
>gb|AL501067.1|AL501067 AL501067 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02O22u 3', mRNA sequence
Length = 556
Score = 71.9 bits (36), Expect = 4e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 514 acccagctgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggcgccaag 573
|||||||||||||| ||||||||| |||| ||||| || || ||||| |||||||
Sbjct: 433 acccagctgacgcatcacggcatgctgttcgtgccggtcgggtacacgcacggcgccggc 374
Query: 574 ctgttcggcatggaccaggtccagggtggcagcccctacggcgccggcacgttcgc 629
|||||| ||||||| ||||| |||| |||||||| ||||| |||||||| |||||
Sbjct: 373 atgttcgccatggacgaggtcaagggcggcagcccgtacggtgccggcaccttcgc 318
Score = 42.1 bits (21), Expect = 0.033
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 679 caccaggggaaatacttcgcgggcatcgccaagaagctcaa 719
|||||||| || ||||| || ||||| ||||||||||||||
Sbjct: 265 caccagggcaagtactttgccggcattgccaagaagctcaa 225
>gb|AJ435127.1|AJ435127 AJ435127 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200028C08F2, mRNA sequence
Length = 528
Score = 71.9 bits (36), Expect = 4e-011
Identities = 96/116 (82%)
Strand = Plus / Plus
Query: 514 acccagctgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggcgccaag 573
|||||||||||||| ||||||||| |||| ||||| || || ||||| |||||||
Sbjct: 13 acccagctgacgcatcacggcatgctgttcgtgccggtcgggtacacgcacggcgccggc 72
Query: 574 ctgttcggcatggaccaggtccagggtggcagcccctacggcgccggcacgttcgc 629
|||||| ||||||| ||||| |||| |||||||| ||||| |||||||| |||||
Sbjct: 73 atgttcgccatggacgaggtcaagggcggcagcccgtacggtgccggcaccttcgc 128
Score = 42.1 bits (21), Expect = 0.033
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 679 caccaggggaaatacttcgcgggcatcgccaagaagctcaa 719
|||||||| || ||||| || ||||| ||||||||||||||
Sbjct: 181 caccagggcaagtactttgccggcattgccaagaagctcaa 221
>gb|AJ462473.1|AJ462473 AJ462473 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200028C08F1, mRNA sequence
Length = 240
Score = 71.9 bits (36), Expect = 4e-011
Identities = 96/116 (82%)
Strand = Plus / Plus
Query: 514 acccagctgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggcgccaag 573
|||||||||||||| ||||||||| |||| ||||| || || ||||| |||||||
Sbjct: 5 acccagctgacgcatcacggcatgctgttcgtgccggtcgggtacacgcacggcgccggc 64
Query: 574 ctgttcggcatggaccaggtccagggtggcagcccctacggcgccggcacgttcgc 629
|||||| ||||||| ||||| |||| |||||||| ||||| |||||||| |||||
Sbjct: 65 atgttcgccatggacgaggtcaagggcggcagcccgtacggtgccggcaccttcgc 120
Score = 42.1 bits (21), Expect = 0.033
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 679 caccaggggaaatacttcgcgggcatcgccaagaagctcaa 719
|||||||| || ||||| || ||||| ||||||||||||||
Sbjct: 173 caccagggcaagtactttgccggcattgccaagaagctcaa 213
>gb|BM443151.2|BM443151 EBro02_SQ002_M05_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ002_M05 5', mRNA sequence
Length = 384
Score = 71.9 bits (36), Expect = 4e-011
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 328 gaggctgacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatg 387
||||| ||||| ||||| || || |||||||| ||||||| |||||||| || ||||||
Sbjct: 268 gaggccgacggcatcctgttcggctttccgacgcggttcggcatgatggcggcgcagatg 327
Query: 388 aaggcgttcttcgatgccaccggtgggctctggagggagcagagcctc 435
||||| |||||||| ||||||| || |||||| || ||||||||||
Sbjct: 328 aaggccttcttcgactccaccggcggcctctggcaggcgcagagcctc 375
>gb|BM443390.2|BM443390 EBro02_SQ003_O10_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ003_O10 5', mRNA sequence
Length = 142
Score = 71.9 bits (36), Expect = 4e-011
Identities = 105/128 (82%)
Strand = Plus / Plus
Query: 271 aagatgggcgcgccccctaagcccgacgtgccagtcatcacaccgcaggaacttgcagag 330
||||||||||| || || ||| |||||||||| || ||| | || || || || || |||
Sbjct: 15 aagatgggcgcccctcccaagaccgacgtgccggtgatctcccctcacgagctggcggag 74
Query: 331 gctgacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatgaag 390
|| ||||| |||| || ||||| ||||| |||||||| |||||||| || |||||||||
Sbjct: 75 gccgacggcgtcctgttcgggttcccgacgaggttcggcatgatggcggcgcagatgaag 134
Query: 391 gcgttctt 398
||||||||
Sbjct: 135 gcgttctt 142
>gb|BF266201.2|BF266201 HV_CEa0014H09f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0014H09f, mRNA sequence
Length = 537
Score = 69.9 bits (35), Expect = 1e-010
Identities = 176/223 (78%)
Strand = Plus / Plus
Query: 329 aggctgacggtatcctctttgggtttccgacaaggttcggaatgatggcagctcagatga 388
|||| ||||| ||||| || || || ||||| ||||||| |||||| | || |||||||
Sbjct: 268 aggccgacggcatcctgttcggcttcccgacgcggttcggcatgatgaccgcgcagatga 327
Query: 389 aggcgttcttcgatgccaccggtgggctctggagggagcagagcctcgctggcaagcctg 448
|||| ||||| || |||| || || |||||| | ||||| |||||| |||||||| |
Sbjct: 328 aggccttctttgactccacaggcggcctctggcagcagcagtccctcgccggcaagcccg 387
Query: 449 ccggcatgttcttcagcactggaacccagggtggtggccaagagactacaccgctgacgg 508
| | | | |||||| ||| || |||||||| || ||||| ||||| ||| |||| || |
Sbjct: 388 cggccgttttcttcgccacgggcacccagggcggcggccaggagaccacagcgctcaccg 447
Query: 509 cgattacccagctgacgcaccacggcatggtgtttgtgcccgt 551
| | || ||||||||||||||||||||| |||| ||||||||
Sbjct: 448 ccgtgacgcagctgacgcaccacggcatgctgttcgtgcccgt 490
>gb|BF621463.3|BF621463 HVSMEa0011B06f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011B06f, mRNA sequence
Length = 805
Score = 61.9 bits (31), Expect = 4e-008
Identities = 94/115 (81%)
Strand = Plus / Minus
Query: 517 cagctgacgcaccacggcatggtgtttgtgcccgtgggctacaccttcggcgccaagctg 576
||||| ||||||||||||||| | || |||||||| |||||||| ||||||| ||
Sbjct: 323 cagctcacgcaccacggcatgctcttcgtgcccgtcggctacacgcacggcgccggcatg 264
Query: 577 ttcggcatggaccaggtccagggtggcagcccctacggcgccggcacgttcgccg 631
|||| | | ||| ||||| |||| |||||||| ||||| |||||||| |||||||
Sbjct: 263 ttcgccgtcgacgaggtcaagggcggcagcccgtacggggccggcaccttcgccg 209
Score = 61.9 bits (31), Expect = 4e-008
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 679 caccaggggaaatacttcgcgggcatcgccaagaagctcaagg 721
||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct: 158 caccaggggaagtacttcgccggcgtcgccaagaagctcaagg 116
>gb|BF254992.2|BF254992 HVSMEf0005K05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005K05f, mRNA sequence
Length = 594
Score = 61.9 bits (31), Expect = 4e-008
Identities = 157/199 (78%)
Strand = Plus / Plus
Query: 362 ggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggctctgga 421
||||||| |||||||| || ||||||||||| |||||||| |||| || || ||||||
Sbjct: 319 ggttcggcatgatggcggcgcagatgaaggccttcttcgactccacgggcggcctctggc 378
Query: 422 gggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaacccagggtg 481
| |||| |||||| |||||||| || ||| | |||||| ||| || || ||||| |
Sbjct: 379 aagcgcagtccctcgccggcaagcccgcgggcgtcttcttcgccacgggcacgcagggcg 438
Query: 482 gtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggcatggtgt 541
| ||||| ||||| || | || ||||| | || ||||| ||||||||||||||| | |
Sbjct: 439 gcggccaggagaccacggccctcacggccgtcacgcagctcacgcaccacggcatgctct 498
Query: 542 ttgtgcccgtgggctacac 560
| |||||||| ||||||||
Sbjct: 499 tcgtgcccgtcggctacac 517
>gb|BQ468061.1|BQ468061 HR01N04r HR Hordeum vulgare subsp. vulgare cDNA clone HR01N04
5-PRIME, mRNA sequence
Length = 329
Score = 61.9 bits (31), Expect = 4e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 675 cttccaccaggggaaatacttcgcgggcatcgccaagaagctcaagggctc 725
|||||||||||| || |||||||| ||||||||||||||||| || |||||
Sbjct: 11 cttccaccagggcaagtacttcgccggcatcgccaagaagctgaaaggctc 61
>gb|BQ660284.1|BQ660284 HI01M13w HI Hordeum vulgare subsp. vulgare cDNA clone HI01M13
3-PRIME, mRNA sequence
Length = 523
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 673 gccttccaccaggggaaatacttcgcgggcatcgccaagaagctcaaggg 722
||||||||||| ||||||||||| || || ||||| |||||||| |||||
Sbjct: 317 gccttccaccaagggaaatactttgccgggatcgcaaagaagcttaaggg 268
Score = 40.1 bits (20), Expect = 0.13
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 474 ccagggtggtggccaagagactacaccgctgacggcgattacccagctgacgcaccacgg 533
|||||| ||||||||||| || || || ||||||| ||||| |||||| |||||| ||
Sbjct: 516 ccagggcggtggccaagaaaccactgcgttgacggccattactcagctggtgcaccatgg 457
Query: 534 catg 537
||||
Sbjct: 456 catg 453
>gb|BM369928.2|BM369928 EBro08_SQ002_F21_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_F21 5', mRNA sequence
Length = 491
Score = 52.0 bits (26), Expect = 3e-005
Identities = 149/190 (78%)
Strand = Plus / Plus
Query: 362 ggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggctctgga 421
||||||| |||||||| || ||||||||||| |||||||| |||| || || ||||||
Sbjct: 300 ggttcggcatgatggcggcgcagatgaaggccttcttcgactccacgggcggcctctggc 359
Query: 422 gggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaacccagggtg 481
|| |||| |||||| |||||||| || ||| | |||||| ||| || || ||||| |
Sbjct: 360 aggcgcagtccctcgccggcaagccggcgggcgtcttcttcgccacgggcacgcagggcg 419
Query: 482 gtggccaagagactacaccgctgacggcgattacccagctgacgcaccacggcatggtgt 541
| ||||| ||||| || | || |||| | || ||||| ||||||||||||||| | |
Sbjct: 420 gcggccaggagaccacggccctcacgggcgtcacgcagctcacgcaccacggcatgctct 479
Query: 542 ttgtgcccgt 551
| ||||||||
Sbjct: 480 tcgtgcccgt 489
>gb|BG414812.2|BG414812 HVSMEk0003M24f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0003M24f, mRNA sequence
Length = 867
Score = 48.1 bits (24), Expect = 5e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 504 gacggcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacacctt 563
|||||| || ||||||||| ||||||||| ||| ||||||| ||| | |||||||||||
Sbjct: 214 gacggcaatcacccagctggtgcaccacgggatgctgtttgtccccattggctacacctt 273
>gb|BQ460085.1|BQ460085 HA07E05r HA Hordeum vulgare subsp. vulgare cDNA clone HA07E05
5-PRIME, mRNA sequence
Length = 615
Score = 48.1 bits (24), Expect = 5e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 504 gacggcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacacctt 563
|||||| || ||||||||| ||||||||| ||| ||||||| ||| | |||||||||||
Sbjct: 80 gacggcaatcacccagctggtgcaccacgggatgctgtttgtccccattggctacacctt 139
>gb|BQ657721.1|BQ657721 HA07E05u HA Hordeum vulgare subsp. vulgare cDNA clone HA07E05
3-PRIME, mRNA sequence
Length = 541
Score = 48.1 bits (24), Expect = 5e-004
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 504 gacggcgattacccagctgacgcaccacggcatggtgtttgtgcccgtgggctacacctt 563
|||||| || ||||||||| ||||||||| ||| ||||||| ||| | |||||||||||
Sbjct: 536 gacggcaatcacccagctggtgcaccacgggatgctgtttgtccccattggctacacctt 477
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 111,793
Number of Sequences: 312970
Number of extensions: 111793
Number of successful extensions: 29142
Number of sequences better than 0.5: 56
Number of HSP's better than 0.5 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29014
Number of HSP's gapped (non-prelim): 93
length of query: 964
length of database: 175,134,539
effective HSP length: 19
effective length of query: 945
effective length of database: 169,188,109
effective search space: 159882763005
effective search space used: 159882763005
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)