BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441110.2.2
(1019 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF255517.3|BF255517 HVSMEf0007B04f Hordeum vulgare seedl... 759 0.0
gb|BM099190.2|BM099190 EBes01_SQ002_H21_R embryo sac, 4-6 D... 733 0.0
gb|CK125072.1|CK125072 BES1824106i12 BES1824 Hordeum vulgar... 731 0.0
gb|BF621259.1|BF621259 HVSMEa0006D21f Hordeum vulgare seedl... 660 0.0
gb|BM369508.2|BM369508 EBem07_SQ003_M17_R embryo, 28 DPA, n... 648 0.0
gb|AL503495.1|AL503495 AL503495 Hordeum vulgare Barke roots... 622 e-177
gb|BU981802.1|BU981802 HA24K23r HA Hordeum vulgare subsp. v... 622 e-177
gb|BG344397.1|BG344397 HVSMEg0009C10f Hordeum vulgare pre-a... 611 e-173
gb|BG416499.1|BG416499 HVSMEk0012J14f Hordeum vulgare testa... 607 e-172
gb|AV915094.1|AV915094 AV915094 K. Sato unpublished cDNA li... 577 e-163
gb|AV915117.1|AV915117 AV915117 K. Sato unpublished cDNA li... 573 e-162
gb|BE060748.3|BE060748 HVSMEg0013D16f Hordeum vulgare pre-a... 563 e-159
gb|BU983729.1|BU983729 HA30N16r HA Hordeum vulgare subsp. v... 541 e-152
gb|BU986184.1|BU986184 HF09O20r HF Hordeum vulgare subsp. v... 539 e-152
gb|CB882493.1|CB882493 HL02A08w HL Hordeum vulgare subsp. v... 494 e-138
gb|CA032624.1|CA032624 HX13L05r HX Hordeum vulgare subsp. v... 488 e-136
gb|AV920228.1|AV920228 AV920228 K. Sato unpublished cDNA li... 482 e-134
gb|AV920250.1|AV920250 AV920250 K. Sato unpublished cDNA li... 480 e-134
gb|BU980268.1|BU980268 HA20C21r HA Hordeum vulgare subsp. v... 480 e-134
gb|BQ460449.1|BQ460449 HA09J24r HA Hordeum vulgare subsp. v... 478 e-133
gb|BE060252.3|BE060252 HVSMEg0011L20f Hordeum vulgare pre-a... 448 e-124
gb|AV917497.1|AV917497 AV917497 K. Sato unpublished cDNA li... 416 e-115
gb|AL500907.1|AL500907 AL500907 Hordeum vulgare Barke roots... 406 e-112
gb|BJ465487.1|BJ465487 BJ465487 K. Sato unpublished cDNA li... 404 e-111
gb|BQ471183.1|BQ471183 HV01H06T HV Hordeum vulgare subsp. v... 391 e-107
gb|CA015435.1|CA015435 HT14E23r HT Hordeum vulgare subsp. v... 391 e-107
gb|CK123056.1|CK123056 BES1824101p18 BES1824 Hordeum vulgar... 391 e-107
gb|CK123982.1|CK123982 BES1824106f18 BES1824 Hordeum vulgar... 389 e-106
gb|AL505462.1|AL505462 AL505462 Hordeum vulgare Barke roots... 387 e-106
gb|BQ465083.1|BQ465083 HU02J14r HU Hordeum vulgare subsp. v... 387 e-106
gb|CA025362.1|CA025362 HZ51P06r HZ Hordeum vulgare subsp. v... 383 e-105
gb|BU976147.1|BU976147 HA03D15r HA Hordeum vulgare subsp. v... 379 e-103
gb|BU987698.1|BU987698 HF15I04r HF Hordeum vulgare subsp. v... 379 e-103
gb|BJ549410.1|BJ549410 BJ549410 K. Sato unpublished cDNA li... 379 e-103
gb|BG343229.2|BG343229 HVSMEg0005C16f Hordeum vulgare pre-a... 367 e-100
gb|BG344285.1|BG344285 HVSMEg0008J07f Hordeum vulgare pre-a... 349 1e-094
gb|BQ465827.1|BQ465827 HU04M21r HU Hordeum vulgare subsp. v... 347 4e-094
gb|CA025118.1|CA025118 HZ51E05r HZ Hordeum vulgare subsp. v... 347 4e-094
gb|CA025207.1|CA025207 HZ51I05r HZ Hordeum vulgare subsp. v... 347 4e-094
gb|CA029545.1|CA029545 HZ65I11r HZ Hordeum vulgare subsp. v... 347 4e-094
gb|CA029693.1|CA029693 HZ65O24r HZ Hordeum vulgare subsp. v... 347 4e-094
gb|BU979830.1|BU979830 HA17G20r HA Hordeum vulgare subsp. v... 341 3e-092
gb|CA025053.1|CA025053 HZ51B09r HZ Hordeum vulgare subsp. v... 341 3e-092
gb|CV054680.1|CV054680 BNEL112b2 Barley EST endosperm libra... 339 1e-091
gb|BJ467628.1|BJ467628 BJ467628 K. Sato unpublished cDNA li... 335 2e-090
gb|BI780955.2|BI780955 EBma05_SQ001_K18_R maternal, 12 DPA,... 335 2e-090
gb|BM096569.2|BM096569 EBma05_SQ001_M03_R maternal, 12 DPA,... 335 2e-090
gb|AJ463546.1|AJ463546 AJ463546 S00002 Hordeum vulgare subs... 329 1e-088
gb|BF628899.2|BF628899 HVSMEb0009C03f Hordeum vulgare seedl... 319 1e-085
gb|BG344957.1|BG344957 HVSMEg0018A19f Hordeum vulgare pre-a... 319 1e-085
gb|BF064660.2|BF064660 HV_CEb0016M11f Hordeum vulgare seedl... 319 1e-085
gb|BJ453194.1|BJ453194 BJ453194 K. Sato unpublished cDNA li... 319 1e-085
gb|BQ460776.1|BQ460776 HA05P11r HA Hordeum vulgare subsp. v... 319 1e-085
gb|BU999664.1|BU999664 HI15E06r HI Hordeum vulgare subsp. v... 319 1e-085
gb|CA025997.1|CA025997 HZ53M10r HZ Hordeum vulgare subsp. v... 319 1e-085
gb|CV058623.1|CV058623 BNEL3A6 Barley EST endosperm library... 319 1e-085
gb|CK122833.1|CK122833 BES1824106b12 BES1824 Hordeum vulgar... 319 1e-085
gb|CA008510.1|CA008510 HU11D01r HU Hordeum vulgare subsp. v... 317 4e-085
gb|AL506182.1|AL506182 AL506182 Hordeum vulgare Barke devel... 315 2e-084
gb|BG365123.1|BG365123 HVSMEi0001G06f Hordeum vulgare 20 DA... 315 2e-084
gb|BM100789.2|BM100789 EBpi01_SQ002_A02_R pistil, 1 DPA, no... 315 2e-084
gb|CK123091.1|CK123091 BES1824102b07 BES1824 Hordeum vulgar... 313 6e-084
gb|BQ472055.1|BQ472055 HV04E13r HV Hordeum vulgare subsp. v... 305 2e-081
gb|BJ549142.1|BJ549142 BJ549142 K. Sato unpublished cDNA li... 305 2e-081
gb|BJ549849.1|BJ549849 BJ549849 K. Sato unpublished cDNA li... 301 2e-080
gb|CA022625.1|CA022625 HZ43O03r HZ Hordeum vulgare subsp. v... 297 4e-079
gb|CA027157.1|CA027157 HZ58B02r HZ Hordeum vulgare subsp. v... 297 4e-079
gb|BI955579.1|BI955579 HVSMEm0023K08f Hordeum vulgare green... 293 6e-078
gb|BI953063.1|BI953063 HVSMEm0009K24f Hordeum vulgare green... 283 6e-075
gb|BU981309.1|BU981309 HA23D21r HA Hordeum vulgare subsp. v... 283 6e-075
gb|BE411215.1|BE411215 ISC003.C05F990525 ITEC ISC Barley Le... 276 1e-072
gb|BG369037.2|BG369037 HVSMEi0022I07f Hordeum vulgare 20 DA... 276 1e-072
gb|BI779267.2|BI779267 EBro01_SQ003_I02_R root, 3 week, hyd... 276 1e-072
gb|BQ757832.1|BQ757832 EBem10_SQ005_F23_R embryo, 2 Day ger... 276 1e-072
gb|CA028967.1|CA028967 HZ63M09r HZ Hordeum vulgare subsp. v... 276 1e-072
gb|BE193863.2|BE193863 HVSMEh0082L19f Hordeum vulgare 5-45 ... 274 5e-072
gb|BU989147.1|BU989147 HF19P01r HF Hordeum vulgare subsp. v... 268 3e-070
gb|CA027607.1|CA027607 HZ59H09r HZ Hordeum vulgare subsp. v... 262 2e-068
gb|BE411202.1|BE411202 ISC003.B04F990525 ITEC ISC Barley Le... 260 8e-068
gb|BE216450.2|BE216450 HV_CEb0010I11f Hordeum vulgare seedl... 258 3e-067
gb|BI777080.2|BI777080 EBpi03_SQ001_N10_R pistil, 4 DPA, no... 222 2e-056
gb|BF065589.2|BF065589 HV_CEb0012N18f Hordeum vulgare seedl... 214 4e-054
gb|BQ657113.1|BQ657113 HA09J24u HA Hordeum vulgare subsp. v... 206 1e-051
gb|BF267097.2|BF267097 HV_CEa0016P01f Hordeum vulgare seedl... 198 3e-049
gb|BU969980.1|BU969980 HB13D16r BC Hordeum vulgare subsp. v... 192 2e-047
gb|BJ549610.1|BJ549610 BJ549610 K. Sato unpublished cDNA li... 184 4e-045
gb|BJ460743.1|BJ460743 BJ460743 K. Sato unpublished cDNA li... 168 2e-040
gb|BQ664053.1|BQ664053 HV01H06w HV Hordeum vulgare subsp. v... 165 4e-039
gb|AL450920.1|AL450920 AL450920 Hordeum vulgare Barke etiol... 153 1e-035
gb|AJ436435.1|AJ436435 AJ436435 S00002 Hordeum vulgare subs... 151 5e-035
gb|CV062611.1|CV062611 BNEL81a1 Barley EST endosperm librar... 151 5e-035
gb|CA015415.1|CA015415 HT14D20r HT Hordeum vulgare subsp. v... 137 8e-031
gb|BF255601.2|BF255601 HVSMEf0007E20f Hordeum vulgare seedl... 135 3e-030
gb|AL502727.1|AL502727 AL502727 Hordeum vulgare Barke roots... 129 2e-028
gb|BM376084.2|BM376084 EBma01_SQ002_E21_R maternal, 4 DPA, ... 129 2e-028
gb|AJ435114.1|AJ435114 AJ435114 S00002 Hordeum vulgare subs... 111 5e-023
gb|BQ663963.1|BQ663963 HU04M21u HU Hordeum vulgare subsp. v... 111 5e-023
gb|BQ664645.1|BQ664645 HV04E13u HV Hordeum vulgare subsp. v... 84 1e-014
gb|BI960687.1|BI960687 HVSMEn0025N13f Hordeum vulgare rachi... 80 2e-013
gb|BQ663426.1|BQ663426 HU02J14u HU Hordeum vulgare subsp. v... 74 1e-011
gb|BE411848.1|BE411848 ISC009.H07F990902 ITEC ISC Barley Le... 64 1e-008
gb|AL500133.1|AL500133 AL500133 Hordeum vulgare Barke etiol... 64 1e-008
gb|AL509600.1|AL509600 AL509600 Hordeum vulgare Barke devel... 64 1e-008
gb|BF255589.3|BF255589 HVSMEf0007E08f Hordeum vulgare seedl... 64 1e-008
gb|AJ434631.1|AJ434631 AJ434631 S00002 Hordeum vulgare subs... 64 1e-008
gb|BM098158.2|BM098158 EBpi03_SQ002_L10_R pistil, 4 DPA, no... 64 1e-008
gb|BU995651.1|BU995651 HM10O19r HM Hordeum vulgare subsp. v... 64 1e-008
gb|CA005290.1|CA005290 HU11D01u HU Hordeum vulgare subsp. v... 64 1e-008
gb|CB881803.1|CB881803 HM10O19w HM Hordeum vulgare subsp. v... 64 1e-008
gb|BI777150.2|BI777150 EBro03_SQ002_C17_R root, 3 week, wat... 42 0.035
gb|BE558500.2|BE558500 HV_CEb0017P05f Hordeum vulgare seedl... 40 0.14
gb|BQ466901.1|BQ466901 HS01P01T HS Hordeum vulgare subsp. v... 40 0.14
gb|BQ467189.1|BQ467189 HS02P01r HS Hordeum vulgare subsp. v... 40 0.14
gb|BU996029.1|BU996029 HM12D01r HM Hordeum vulgare subsp. v... 40 0.14
gb|CA014071.1|CA014071 HT10E22r HT Hordeum vulgare subsp. v... 40 0.14
>gb|BF255517.3|BF255517 HVSMEf0007B04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007B04f, mRNA sequence
Length = 840
Score = 759 bits (383), Expect = 0.0
Identities = 536/587 (91%)
Strand = Plus / Minus
Query: 269 gccctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaac 328
|||||||||||||||||| ||||||||||| || |||||||| |||||||||||||| ||
Sbjct: 597 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 538
Query: 329 aacactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcc 388
||||||||||||||| |||||||| || |||||||||||||| |||| || ||||||||
Sbjct: 537 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 478
Query: 389 cttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagc 448
|||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct: 477 cttcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgc 418
Query: 449 atatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatc 508
||||||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 417 atatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatc 358
Query: 509 agacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatc 568
||| ||||||||||| |||||||| || ||||||| ||| ||||| || |||||||||||
Sbjct: 357 agaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatc 298
Query: 569 taccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgat 628
|||| ||||||||||||||||||| |||||||||| || ||||| || || || |||||
Sbjct: 297 aaccaagtatactacagcatcaacccttgcgtagtagtctttccagacccgtcgagcgat 238
Query: 629 ctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccga 688
|||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 237 ctggtgaccgccgagatcgaaggctttgaacttgatcttgccgatgctgagctcctccga 178
Query: 689 cgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcag 748
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 177 cgtggggtgctgcgtcggctggtgctgcaccagccgctcgtccttgagcatgtggaggag 118
Query: 749 cgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacag 808
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 117 agtggtcttgccggcgttgtcgaggccgaggaagaggatcttggcctctttctgccacag 58
Query: 809 gccgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
|||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 57 gccgagcgaggccagcaccccgtagaaccagtcccaaaggaacatct 11
>gb|BM099190.2|BM099190 EBes01_SQ002_H21_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ002_H21 5', mRNA sequence
Length = 725
Score = 733 bits (370), Expect = 0.0
Identities = 528/581 (90%)
Strand = Plus / Minus
Query: 275 cttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacact 334
|||||||||||| ||||||||||| || |||||||| |||||||||||||| ||||||||
Sbjct: 725 cttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggacaacact 666
Query: 335 gcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcccttccc 394
||||||||| |||||||| || |||||||||||||| |||| || |||| ||||||||
Sbjct: 665 gcacatgaacacctcaagaggccggacattggagtcaacaagattcacctgccccttccc 606
Query: 395 ggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatgg 454
||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||
Sbjct: 605 agttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgcatatgg 546
Query: 455 gatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacag 514
||| |||||||| |||||||||||||||||||| |||||| |||| ||||||||||| ||
Sbjct: 545 gatgtcaatcttattgccaaggatgagaaatgggacattgnccaaggaatcatcagaaag 486
Query: 515 gagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccag 574
||||||||| |||||||| || ||||||| ||| ||||| || ||||||||||||||||
Sbjct: 485 gagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatctaccaa 426
Query: 575 gtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtg 634
||||||||||||||||||| |||||||||| || ||||| || || || |||||||||||
Sbjct: 425 gtatactacagcatcaacccttgcgtagtagtctttccagacccgtcgagcgatctggtg 366
Query: 635 gccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcgg 694
|||||||| ||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 365 accgccgagatcgaaggctttgaacttgatcttgccgatgctgagctcctccgacgtggg 306
Query: 695 gtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggt 754
|||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||
Sbjct: 305 gtgctgcgtcggctggtgctgcaccagccgctcgtccttgagcatgtggaggagagtggt 246
Query: 755 cttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgag 814
||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||
Sbjct: 245 cttgccggcgttgtcgaggccgaggaagaggatcttggcctctttctgccacatgccgag 186
Query: 815 ggaggccagcaccccgtagaaccagtcccagaggaacatct 855
||||||||||||||||||||||||||||| ||||||||||
Sbjct: 185 cgaggccagcaccccgtagaaccagtcccaaaggaacatct 145
>gb|CK125072.1|CK125072 BES1824106i12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I126 5-PRIME, mRNA sequence
Length = 795
Score = 731 bits (369), Expect = 0.0
Identities = 536/589 (91%), Gaps = 2/589 (0%)
Strand = Plus / Minus
Query: 269 gccctacttgatgtactgggagacccacttgaaaccatc-accgtagcccatcttgcgaa 327
|||||||||||||||||| ||||||||||| || ||||| ||| |||||||||||||| |
Sbjct: 763 gccctacttgatgtactgcgagacccacttaaacccatccaccatagcccatcttgcgga 704
Query: 328 caacactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgc 387
|||||||||||||||| |||||||| || |||||||||||||| |||| || |||||||
Sbjct: 703 caacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgc 644
Query: 388 cctt-cccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggca 446
|||| ||| ||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 643 ccttncccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggct 584
Query: 447 gcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatca 506
||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 583 gcatatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatca 524
Query: 507 tcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgca 566
||||| ||||||||||| |||||||| || ||||||| ||| ||||| || |||||||||
Sbjct: 523 tcagaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgca 464
Query: 567 tctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcg 626
|| |||| ||||||||||||||||||| |||||||||| || ||||| || || || |||
Sbjct: 463 tcaaccaagtatactacagcatcaacccttgcgtagtagtctttccagacccgtcgagcg 404
Query: 627 atctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctcc 686
|||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct: 403 atctggtgaccgccgagatcgaaggctttgaacttgatcttgccgatgctgagctcctcc 344
Query: 687 gacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagc 746
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 343 gacgtggggtgctgcgtcggctggtgctgcaccagccgctcgtccttgagcatgtggagg 284
Query: 747 agcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccac 806
|| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 283 agagtggtcttgccggcgttgtcgaggccgaggaagaggatcttggcctctttctgccac 224
Query: 807 aggccgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
|||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 223 aggccgagcgaggccagcaccccgtagaaccagtcccaaaggaacatct 175
>gb|BF621259.1|BF621259 HVSMEa0006D21f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0006D21f, mRNA sequence
Length = 843
Score = 660 bits (333), Expect = 0.0
Identities = 523/586 (89%), Gaps = 1/586 (0%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
||||||||||| |||| | ||||||||| || |||||||| || |||||||||| ||||
Sbjct: 761 cctacttgatggactgcgggacccacttaaacccatcacca-aggccatcttgcggacaa 703
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
||||||||||||| ||||||| || |||||||||||||| |||| || || |||||||
Sbjct: 702 cactgcacatgaaagcctcaagaggccggacattggagtcaacaagattcactttgccct 643
Query: 391 tcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcat 450
|||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||
Sbjct: 642 tcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgcat 583
Query: 451 atgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcag 510
||||||| |||||||| | ||||||||||||||||| ||||| ||||| ||||||||||
Sbjct: 582 atgggatgtcaatcttatgnccaaggatgagaaatgggacatttgccaaggaatcatcag 523
Query: 511 acaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatcta 570
| ||||||||||| |||||||| || ||||||| ||| ||||| || ||||||||||| |
Sbjct: 522 aaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatcaa 463
Query: 571 ccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatct 630
||| | ||||||||||||||||| |||||||||| || ||||| || || || |||||||
Sbjct: 462 ccaaggatactacagcatcaacccttgcgtagtagtctttccagacccgtcgagcgatct 403
Query: 631 ggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacg 690
|||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 402 ggtgaccgccgagatcgaaggctttgaacttgatcttgccgatgctgagctcctccgacg 343
Query: 691 tcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcg 750
| |||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
Sbjct: 342 tggggtgctgcgtcggctggtgctgcaccagccgctcgtccttgagcatgtggaggagag 283
Query: 751 tggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggc 810
||||||||||||||||||| ||||| ||| | |||||||||||||| |||||||||||||
Sbjct: 282 tggtcttgccggcgttgtcnaggccgaggganaggatcttggcctctttctgccacaggc 223
Query: 811 cgagggaggccagcaccccgtagaaccagtcccagaggaacatctc 856
|||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 222 cgagcgaggccagcaccccgtagaaccagtcccaaaggaacatctc 177
>gb|BM369508.2|BM369508 EBem07_SQ003_M17_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_M17 5', mRNA sequence
Length = 636
Score = 648 bits (327), Expect = 0.0
Identities = 456/499 (91%)
Strand = Plus / Minus
Query: 357 cggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcct 416
|||||||||||||| |||| || |||||||||||||| |||||||||||||||||||||
Sbjct: 628 cggacattggagtcaacaagattcaccttgcccttcccagttgtgaagttgctaaggcct 569
Query: 417 aggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaagg 476
|||||||| || ||||| ||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 568 aggtgatatcgcagctcttcttcagaggctgcatatgggatgtcaatcttattgccaagg 509
Query: 477 atgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctccttcttt 536
||||||||||| ||||| ||||| ||||||||||| ||||||||||| |||||||| ||
Sbjct: 508 atgagaaatgggacatttgccaaggaatcatcagaaaggagagcatcaagctcctttttc 449
Query: 537 gattcagcaaatcgctccttatcatatgcatctaccaggtatactacagcatcaaccttt 596
||||||| ||| ||||| || |||||||||||||||| ||||||||||||||||||| ||
Sbjct: 448 gattcagtaaagcgctctttgtcatatgcatctaccaagtatactacagcatcaaccctt 389
Query: 597 gcgtagtaatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgccttg 656
|||||||| || ||||| || || || ||||||||||| |||||||| ||||| || |||
Sbjct: 388 gcgtagtagtctttccagacccgtcgagcgatctggtgaccgccgagatcgaaggctttg 329
Query: 657 aacttgatcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtgctgc 716
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 328 aacttgatcttgccgatgctgagctcctccgacgtggggtgctgcgtcggctggtgctgc 269
Query: 717 accaaccgctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcgaggcca 776
|||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 268 accagccgctcgtccttgagcatgtggaggagagtggtcttgccggcgttgtcgaggccg 209
Query: 777 aggaagaggatcttggcctccttctgccacaggccgagggaggccagcaccccgtagaac 836
|||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||
Sbjct: 208 aggaagaggatcttggcctctttctgccacatgccgagcgaggccagcaccccgtagaac 149
Query: 837 cagtcccagaggaacatct 855
|||||||| ||||||||||
Sbjct: 148 cagtcccaaaggaacatct 130
>gb|AL503495.1|AL503495 AL503495 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02F13T 5', mRNA sequence
Length = 700
Score = 622 bits (314), Expect = e-177
Identities = 470/520 (90%), Gaps = 2/520 (0%)
Strand = Plus / Minus
Query: 338 catgaagacctcaagtggacgg-acattggagtcgccaaggttgaccttgcccttcccg- 395
|||||| |||||||| || ||| |||||| |||| |||| || ||| ||||||||||
Sbjct: 700 catgaacacctcaagaggccgggacattgnagtcaacaagattcaccntgcccttcccca 641
Query: 396 gttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatggg 455
||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||
Sbjct: 640 gttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgcatatggg 581
Query: 456 atatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacagg 515
|| |||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |||
Sbjct: 580 atgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatcagaaagg 521
Query: 516 agagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccagg 575
|||||||| |||||||| || ||||||| ||| ||||| || ||||||||||| |||| |
Sbjct: 520 agagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatcaaccaag 461
Query: 576 tatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtgg 635
|||||||||||||||||| |||||||||| || ||||| || || || |||||||||||
Sbjct: 460 tatactacagcatcaacccttgcgtagtagtctttccagacccgtcgagcgatctggtga 401
Query: 636 ccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcggg 695
|||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 400 ccgccgagatcgaaggctttgaacttgatcttgccgatgctgagctcctccgacgtgggg 341
Query: 696 tgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtc 755
||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||
Sbjct: 340 tgctgcgtcggctggtgctgcaccagccgctcgtccttgagcatgtggaggagagtggtc 281
Query: 756 ttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagg 815
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 280 ttgccggcgttgtcgaggccgaggaagaggatcttggcctctttctgccacaggccgagc 221
Query: 816 gaggccagcaccccgtagaaccagtcccagaggaacatct 855
||||||||||||||||||||||||||||| ||||||||||
Sbjct: 220 gaggccagcaccccgtagaaccagtcccaaaggaacatct 181
>gb|BU981802.1|BU981802 HA24K23r HA Hordeum vulgare subsp. vulgare cDNA clone HA24K23
5-PRIME, mRNA sequence
Length = 620
Score = 622 bits (314), Expect = e-177
Identities = 431/470 (91%)
Strand = Plus / Minus
Query: 386 gcccttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggc 445
||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 620 gcccttcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggc 561
Query: 446 agcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatc 505
||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||
Sbjct: 560 tgcatatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatc 501
Query: 506 atcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgc 565
|||||| ||||||||||| |||||||| || ||||||| ||| ||||| || ||||||||
Sbjct: 500 atcagaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgc 441
Query: 566 atctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgc 625
||| |||| ||||||||||||||||||| |||||||||| || ||||| || || || ||
Sbjct: 440 atcaaccaagtatactacagcatcaacccttgcgtagtagtctttccagacccgtcgagc 381
Query: 626 gatctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctc 685
||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 380 gatctggtgaccgccgagatcgaaggctttgaacttgatcttgccgatgctgagctcctc 321
Query: 686 cgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggag 745
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 320 cgacgtggggtgctgcgtcggctggtgctgcaccagccgctcgtccttgagcatgtggag 261
Query: 746 cagcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgcca 805
|| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 260 gagagtggtcttgccggcgttgtcgaggccgaggaagaggatcttggcctctttctgcca 201
Query: 806 caggccgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 200 caggccgagcgaggccagcaccccgtagaaccagtcccaaaggaacatct 151
>gb|BG344397.1|BG344397 HVSMEg0009C10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0009C10f, mRNA sequence
Length = 824
Score = 611 bits (308), Expect = e-173
Identities = 521/586 (88%), Gaps = 5/586 (0%)
Strand = Plus / Minus
Query: 274 acttgatgtactgggagacccacttgaaacc-atcaccgtagcccatcttgcgaacaaca 332
|||||||||| || ||||||| ||| ||||| |||||| |||||||||||| | ||| ||
Sbjct: 709 acttgatgtattgcgagacccccttaaaacccatcaccatagcccatcttggggacacca 650
Query: 333 ctgcacatgaagacctcaagtggacggacattggagtcgccaaggttgacc-ttgccctt 391
||||||||||| || ||||| || ||||||| | || |||| || ||| |||||| |
Sbjct: 649 ctgcacatgaacacttcaagaggccggacatggagntcaacaagattcacccttgcccct 590
Query: 392 cccg-gttgtgaagttgctaa-ggcctaggtgataccgtagctcctcttcagaggcagca 449
||| |||||||||| ||||| ||||||||||||| || ||||||||||||||||| |||
Sbjct: 589 ccccagttgtgaagt-gctaaaggcctaggtgatatcgcagctcctcttcagaggctgca 531
Query: 450 tatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatca 509
|||||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 530 tatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatca 471
Query: 510 gacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatct 569
|| ||||||||||| |||||||| || ||||||| | | ||||| || |||||||||||
Sbjct: 470 gaaaggagagcatcaagctcctttttcgattcagtanagcgctctttgtcatatgcatca 411
Query: 570 accaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatc 629
|||| ||||||||||||||||||| |||||||||| || ||||| || || || ||||||
Sbjct: 410 accaagtatactacagcatcaacccttgcgtagtagtctttccagacccgtcgagcgatc 351
Query: 630 tggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgac 689
||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 350 tggtgaccgccgagatcgaaggctttgaacttgatcttgccgatgctgagctcctccgac 291
Query: 690 gtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagc 749
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 290 gtggggtgctgcgtcggctggtgctgcaccagccgctcgtccttgagcatgtggaggaga 231
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 230 gtggtcttgccggcgttgtcgaggccgaggaagaggatcttggcctctttctgccacagg 171
Query: 810 ccgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 170 ccgagcgaggccagcaccccgtagaaccagtcccaaaggaacatct 125
>gb|BG416499.1|BG416499 HVSMEk0012J14f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0012J14f, mRNA sequence
Length = 695
Score = 607 bits (306), Expect = e-172
Identities = 492/550 (89%), Gaps = 3/550 (0%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
||||||||||||| || ||||||||||| || ||||||| |||| ||||||||| ||||
Sbjct: 548 cctacttgatgta-tgcgagacccactt-aacccatcacaatagctcatcttgcggacaa 491
Query: 331 cac-tgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccc 389
||| |||||||||| ||||||| || ||||||||| |||| |||| || || ||||||
Sbjct: 490 cacntgcacatgaacacctcaaaaggccggacattgaagtcaacaagattcacattgccc 431
Query: 390 ttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagca 449
||||| |||||||||||| |||||||||||||||| || ||||| ||||||||||| |||
Sbjct: 430 ttcccagttgtgaagttgttaaggcctaggtgatatcgcagctcttcttcagaggctgca 371
Query: 450 tatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatca 509
|||||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 370 tatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatca 311
Query: 510 gacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatct 569
|| ||||||||||| |||||||| || ||||||| ||| ||||| || |||||||||||
Sbjct: 310 gaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatca 251
Query: 570 accaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatc 629
|||| ||||||||||||||||||| |||||||||| || ||||| || || || ||||||
Sbjct: 250 accaagtatactacagcatcaacccttgcgtagtagtctttccagacccgtcgagcgatc 191
Query: 630 tggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgac 689
||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 190 tggtgaccgccgagatcgaaggctttgaacttgatcttgccgatgctgagctcctccgac 131
Query: 690 gtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagc 749
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 130 gtggggtgctgcgtcggctggtgctgcaccagccgctcgtccttgagcatgtggaggaga 71
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 70 gtggtcttgccggcgttgtcgaggccgaggaagaggatcttggcctctttctgccacagg 11
Query: 810 ccgagggagg 819
||||| ||||
Sbjct: 10 ccgagcgagg 1
>gb|AV915094.1|AV915094 AV915094 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9n10 5', mRNA sequence
Length = 597
Score = 577 bits (291), Expect = e-163
Identities = 405/443 (91%)
Strand = Plus / Minus
Query: 413 gcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgcc 472
|||||||||||| || ||||| ||||||||||| ||||||||||| |||||||| |||||
Sbjct: 597 gcctaggtgatatcgcagctcttcttcagaggctgcatatgggatgtcaatcttattgcc 538
Query: 473 aaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcctt 532
||||||||||||||| ||||| ||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 537 aaggatgagaaatgggacatttgccaaggaatcatcagaaaggagagcatcaagctcctt 478
Query: 533 ctttgattcagcaaatcgctccttatcatatgcatctaccaggtatactacagcatcaac 592
|| ||||||| ||| ||||| || ||||||||||| |||| ||||||||||||||||||
Sbjct: 477 tttcgattcagtaaagcgctctttgtcatatgcatcaaccaagtatactacagcatcaac 418
Query: 593 ctttgcgtagtaatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgc 652
| |||||||||| || ||||| || || || ||||||||||| |||||||| ||||| ||
Sbjct: 417 ccttgcgtagtagtctttccagacccgtcgagcgatctggtgaccgccgagatcgaaggc 358
Query: 653 cttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtg 712
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 357 tttgaacttgatcttgccgatgctgagctcctccgacgtggggtgctgcgtcggctggtg 298
Query: 713 ctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcgag 772
|||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 297 ctgcaccagccgctcgtccttgagcatgtggaggagagtggtcttgccggcgttgtcgag 238
Query: 773 gccaaggaagaggatcttggcctccttctgccacaggccgagggaggccagcaccccgta 832
||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 237 gccgaggaagaggatcttggcctctttctgccacaggccgagcgaggccagcaccccgta 178
Query: 833 gaaccagtcccagaggaacatct 855
|||||||||||| ||||||||||
Sbjct: 177 gaaccagtcccaaaggaacatct 155
>gb|AV915117.1|AV915117 AV915117 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9p06 5', mRNA sequence
Length = 597
Score = 573 bits (289), Expect = e-162
Identities = 403/441 (91%)
Strand = Plus / Minus
Query: 415 ctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaa 474
|||||||||| || ||||| ||||||||||| ||||||||||| |||||||| |||||||
Sbjct: 597 ctaggtgatatcgcagctcttcttcagaggctgcatatgggatgtcaatcttattgccaa 538
Query: 475 ggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctccttct 534
||||||||||||| ||||| ||||| ||||||||||| ||||||||||| |||||||| |
Sbjct: 537 ggatgagaaatgggacatttgccaaggaatcatcagaaaggagagcatcaagctcctttt 478
Query: 535 ttgattcagcaaatcgctccttatcatatgcatctaccaggtatactacagcatcaacct 594
| ||||||| ||| ||||| || ||||||||||| |||| |||||||||||||||||||
Sbjct: 477 tcgattcagtaaagcgctctttgtcatatgcatcaaccaagtatactacagcatcaaccc 418
Query: 595 ttgcgtagtaatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgcct 654
|||||||||| || ||||| || || || ||||||||||| |||||||| ||||| || |
Sbjct: 417 ttgcgtagtagtctttccagacccgtcgagcgatctggtgaccgccgagatcgaaggctt 358
Query: 655 tgaacttgatcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtgct 714
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 357 tgaacttgatcttgccgatgctgagctcctccgacgtggggtgctgcgtcggctggtgct 298
Query: 715 gcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcgaggc 774
|||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 297 gcaccagccgctcgtccttgagcatgtggaggagagtggtcttgccggcgttgtcgaggc 238
Query: 775 caaggaagaggatcttggcctccttctgccacaggccgagggaggccagcaccccgtaga 834
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 237 cgaggaagaggatcttggcctctttctgccacaggccgagcgaggccagcaccccgtaga 178
Query: 835 accagtcccagaggaacatct 855
|||||||||| ||||||||||
Sbjct: 177 accagtcccaaaggaacatct 157
>gb|BE060748.3|BE060748 HVSMEg0013D16f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0013D16f, mRNA sequence
Length = 919
Score = 563 bits (284), Expect = e-159
Identities = 416/460 (90%)
Strand = Plus / Minus
Query: 396 gttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatggg 455
||||| ||||| ||||||| ||||||||| | ||||| ||||||||||| ||||| |||
Sbjct: 600 gttgtaaagttcctaaggcataggtgatatccaagctcttcttcagaggctgcatagggg 541
Query: 456 atatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacagg 515
|| |||||||| |||||||| ||||||||||| ||||| ||||| ||||||||||| |||
Sbjct: 540 atgtcaatcttattgccaagcatgagaaatgggacatttgccaaggaatcatcagaaagg 481
Query: 516 agagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccagg 575
|||||||| |||||||| || ||||||| ||| ||||| || ||||||||||| |||| |
Sbjct: 480 agagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatcaaccaag 421
Query: 576 tatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtgg 635
|||||||||||||||||| |||||||||| || ||||| || || || |||||||||||
Sbjct: 420 tatactacagcatcaacccttgcgtagtagtctttccagacccgtcgagcgatctggtga 361
Query: 636 ccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcggg 695
|||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 360 ccgccgagatcgaaggctttgaacttgatcttgccgatgctgagctcctccgacgtgggg 301
Query: 696 tgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtc 755
||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||
Sbjct: 300 tgctgcgtcggctggtgctgcaccagccgctcgtccttgagcatgtggaggagagtggtc 241
Query: 756 ttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagg 815
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 240 ttgccggcgttgtcgaggccgaggaagaggatcttggcctctttctgccacaggccgagc 181
Query: 816 gaggccagcaccccgtagaaccagtcccagaggaacatct 855
||||||||||||||||||||||||||||| ||||||||||
Sbjct: 180 gaggccagcaccccgtagaaccagtcccaaaggaacatct 141
>gb|BU983729.1|BU983729 HA30N16r HA Hordeum vulgare subsp. vulgare cDNA clone HA30N16
5-PRIME, mRNA sequence
Length = 534
Score = 541 bits (273), Expect = e-152
Identities = 375/409 (91%)
Strand = Plus / Minus
Query: 447 gcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatca 506
||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 534 gcatatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatca 475
Query: 507 tcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgca 566
||||| ||||||||||| |||||||| || ||||||| ||| ||||| || |||||||||
Sbjct: 474 tcagaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgca 415
Query: 567 tctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcg 626
|| |||| ||||||||||||||||||| |||||||||| || ||||| || || || |||
Sbjct: 414 tcaaccaagtatactacagcatcaacccttgcgtagtagtctttccagacccgtcgagcg 355
Query: 627 atctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctcc 686
|||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct: 354 atctggtgaccgccgagatcgaaggctttgaacttgatcttgccgatgctgagctcctcc 295
Query: 687 gacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagc 746
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 294 gacgtggggtgctgcgtcggctggtgctgcaccagccgctcgtccttgagcatgtggagg 235
Query: 747 agcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccac 806
|| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 234 agagtggtcttgccggcgttgtcgaggccgaggaagaggatcttggcctctttctgccac 175
Query: 807 aggccgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
|||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 174 aggccgagcgaggccagcaccccgtagaaccagtcccaaaggaacatct 126
>gb|BU986184.1|BU986184 HF09O20r HF Hordeum vulgare subsp. vulgare cDNA clone HF09O20
5-PRIME, mRNA sequence
Length = 533
Score = 539 bits (272), Expect = e-152
Identities = 374/408 (91%)
Strand = Plus / Minus
Query: 448 catatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcat 507
|||||||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 533 catatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcat 474
Query: 508 cagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcat 567
|||| ||||||||||| |||||||| || ||||||| ||| ||||| || ||||||||||
Sbjct: 473 cagaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcat 414
Query: 568 ctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcga 627
| |||| ||||||||||||||||||| |||||||||| || ||||| || || || ||||
Sbjct: 413 caaccaagtatactacagcatcaacccttgcgtagtagtctttccagacccgtcgagcga 354
Query: 628 tctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccg 687
||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 353 tctggtgaccgccgagatcgaaggctttgaacttgatcttgccgatgctgagctcctccg 294
Query: 688 acgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagca 747
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 293 acgtggggtgctgcgtcggctggtgctgcaccagccgctcgtccttgagcatgtggagga 234
Query: 748 gcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccaca 807
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 233 gagtggtcttgccggcgttgtcgaggccgaggaagaggatcttggcctctttctgccaca 174
Query: 808 ggccgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 173 ggccgagcgaggccagcaccccgtagaaccagtcccaaaggaacatct 126
>gb|CB882493.1|CB882493 HL02A08w HL Hordeum vulgare subsp. vulgare cDNA clone HL02A08
3-PRIME, mRNA sequence
Length = 558
Score = 494 bits (249), Expect = e-138
Identities = 345/377 (91%)
Strand = Plus / Minus
Query: 479 gagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctccttctttga 538
||||||||| ||||| ||||| ||||||||||| ||||||||||| |||||||| || ||
Sbjct: 558 gagaaatgggacatttgccaaggaatcatcagaaaggagagcatcaagctcctttttcga 499
Query: 539 ttcagcaaatcgctccttatcatatgcatctaccaggtatactacagcatcaacctttgc 598
||||| ||| ||||| || ||||||||||| |||| ||||||||||||||||||| ||||
Sbjct: 498 ttcagtaaagcgctctttgtcatatgcatcaaccaagtatactacagcatcaacccttgc 439
Query: 599 gtagtaatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgccttgaa 658
|||||| || ||||| || || || ||||||||||| |||||||| ||||| || |||||
Sbjct: 438 gtagtagtctttccagacccgtcgagcgatctggtgaccgccgagatcgaaggctttgaa 379
Query: 659 cttgatcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtgctgcac 718
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 378 cttgatcttgccgatgctgagctcctccgacgtggggtgctgcgtcggctggtgctgcac 319
Query: 719 caaccgctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcgaggccaag 778
|| |||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct: 318 cagccgctcgtccttgagcatgtggaggagagtggtcttgccggcgttgtcgaggccgag 259
Query: 779 gaagaggatcttggcctccttctgccacaggccgagggaggccagcaccccgtagaacca 838
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 258 gaagaggatcttggcctctttctgccacaggccgagcgaggccagcaccccgtagaacca 199
Query: 839 gtcccagaggaacatct 855
|||||| ||||||||||
Sbjct: 198 gtcccaaaggaacatct 182
>gb|CA032624.1|CA032624 HX13L05r HX Hordeum vulgare subsp. vulgare cDNA clone HX13L05
5-PRIME, mRNA sequence
Length = 557
Score = 488 bits (246), Expect = e-136
Identities = 344/377 (91%)
Strand = Plus / Minus
Query: 479 gagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctccttctttga 538
||||||||| |||| ||||| ||||||||||| ||||||||||| |||||||| || ||
Sbjct: 557 gagaaatgggacatntgccaaggaatcatcagaaaggagagcatcaagctcctttttcga 498
Query: 539 ttcagcaaatcgctccttatcatatgcatctaccaggtatactacagcatcaacctttgc 598
||||| ||| ||||| || ||||||||||| |||| ||||||||||||||||||| ||||
Sbjct: 497 ttcagtaaagcgctctttgtcatatgcatcaaccaagtatactacagcatcaacccttgc 438
Query: 599 gtagtaatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgccttgaa 658
|||||| || ||||| || || || ||||||||||| |||||||| ||||| || |||||
Sbjct: 437 gtagtagtctttccagacccgtcgagcgatctggtgaccgccgagatcgaaggctttgaa 378
Query: 659 cttgatcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtgctgcac 718
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 377 cttgatcttgccgatgctgagctcctccgacgtggggtgctgcgtcggctggtgctgcac 318
Query: 719 caaccgctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcgaggccaag 778
|| |||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct: 317 cagccgctcgtccttgagcatgtggaggagagtggtcttgccggcgttgtcgaggccgag 258
Query: 779 gaagaggatcttggcctccttctgccacaggccgagggaggccagcaccccgtagaacca 838
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 257 gaagaggatcttggcctctttctgccacaggccgagcgaggccagcaccccgtagaacca 198
Query: 839 gtcccagaggaacatct 855
|||||| ||||||||||
Sbjct: 197 gtcccaaaggaacatct 181
>gb|AV920228.1|AV920228 AV920228 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9n10 3', mRNA sequence
Length = 626
Score = 482 bits (243), Expect = e-134
Identities = 372/415 (89%)
Strand = Plus / Plus
Query: 269 gccctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaac 328
|||||||||||||||||| ||||||||||| || |||||||| |||||||||||||| ||
Sbjct: 212 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 271
Query: 329 aacactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcc 388
||||||||||||||| |||||||| || |||||||||||||| |||| || ||||||||
Sbjct: 272 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 331
Query: 389 cttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagc 448
|||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct: 332 cttcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgc 391
Query: 449 atatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatc 508
||||||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 392 atatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatc 451
Query: 509 agacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatc 568
||| ||||||||||| |||||||| || ||||||| ||| ||||| || |||||||||||
Sbjct: 452 agaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatc 511
Query: 569 taccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgat 628
|||| ||||||||||||||||||| |||||||||| || ||||| || || || |||||
Sbjct: 512 aaccaagtatactacagcatcaacccttgcgtagtagtctttccagacccgtcgagcgat 571
Query: 629 ctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcc 683
|||||| |||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct: 572 ctggtgaccgccgagatcgaaggctttgaacttgatcttgccgatgctgagctcc 626
>gb|AV920250.1|AV920250 AV920250 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9p06 3', mRNA sequence
Length = 606
Score = 480 bits (242), Expect = e-134
Identities = 371/414 (89%)
Strand = Plus / Plus
Query: 269 gccctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaac 328
|||||||||||||||||| ||||||||||| || |||||||| |||||||||||||| ||
Sbjct: 193 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 252
Query: 329 aacactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcc 388
||||||||||||||| |||||||| || |||||||||||||| |||| || ||||||||
Sbjct: 253 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 312
Query: 389 cttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagc 448
|||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct: 313 cttcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgc 372
Query: 449 atatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatc 508
||||||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 373 atatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatc 432
Query: 509 agacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatc 568
||| ||||||||||| |||||||| || ||||||| ||| ||||| || |||||||||||
Sbjct: 433 agaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatc 492
Query: 569 taccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgat 628
|||| ||||||||||||||||||| |||||||||| || ||||| || || || |||||
Sbjct: 493 aaccaagtatactacagcatcaacccttgcgtagtagtctttccagacccgtcgagcgat 552
Query: 629 ctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctc 682
|||||| |||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 553 ctggtgaccgccgagatcgaaggctttgaacttgatcttgccgatgctgagctc 606
>gb|BU980268.1|BU980268 HA20C21r HA Hordeum vulgare subsp. vulgare cDNA clone HA20C21
5-PRIME, mRNA sequence
Length = 531
Score = 480 bits (242), Expect = e-134
Identities = 335/366 (91%)
Strand = Plus / Minus
Query: 490 cattggccaaagaatcatcagacaggagagcatcgagctccttctttgattcagcaaatc 549
|||| ||||| ||||||||||| ||||||||||| |||||||| || ||||||| ||| |
Sbjct: 531 catttgccaaggaatcatcagaaaggagagcatcaagctcctttttcgattcagtaaagc 472
Query: 550 gctccttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagtaatcct 609
|||| || ||||||||||| |||| ||||||||||||||||||| |||||||||| || |
Sbjct: 471 gctctttgtcatatgcatcaaccaagtatactacagcatcaacccttgcgtagtagtctt 412
Query: 610 tccacacgcggcgcgcgatctggtggccgccgaggtcgaacgccttgaacttgatcttgc 669
|||| || || || ||||||||||| |||||||| ||||| || ||||||||||||||||
Sbjct: 411 tccagacccgtcgagcgatctggtgaccgccgagatcgaaggctttgaacttgatcttgc 352
Query: 670 cgatgctgagctcctccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgt 729
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 351 cgatgctgagctcctccgacgtggggtgctgcgtcggctggtgctgcaccagccgctcgt 292
Query: 730 ccttgagcatgtggagcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatct 789
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 291 ccttgagcatgtggaggagagtggtcttgccggcgttgtcgaggccgaggaagaggatct 232
Query: 790 tggcctccttctgccacaggccgagggaggccagcaccccgtagaaccagtcccagagga 849
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 231 tggcctctttctgccacaggccgagcgaggccagcaccccgtagaaccagtcccaaagga 172
Query: 850 acatct 855
||||||
Sbjct: 171 acatct 166
>gb|BQ460449.1|BQ460449 HA09J24r HA Hordeum vulgare subsp. vulgare cDNA clone HA09J24
5-PRIME, mRNA sequence
Length = 537
Score = 478 bits (241), Expect = e-133
Identities = 331/361 (91%)
Strand = Plus / Minus
Query: 495 gccaaagaatcatcagacaggagagcatcgagctccttctttgattcagcaaatcgctcc 554
||||| ||||||||||| ||||||||||| |||||||| || ||||||| ||| |||||
Sbjct: 537 gccaaggaatcatcagaaaggagagcatcaagctcctttttcgattcagtaaagcgctct 478
Query: 555 ttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagtaatccttccac 614
|| ||||||||||| |||| ||||||||||||||||||| |||||||||| || |||||
Sbjct: 477 ttgtcatatgcatcaaccaagtatactacagcatcaacccttgcgtagtagtctttccag 418
Query: 615 acgcggcgcgcgatctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatg 674
|| || || ||||||||||| |||||||| ||||| || |||||||||||||||||||||
Sbjct: 417 acccgtcgagcgatctggtgaccgccgagatcgaaggctttgaacttgatcttgccgatg 358
Query: 675 ctgagctcctccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttg 734
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 357 ctgagctcctccgacgtggggtgctgcgtcggctggtgctgcaccagccgctcgtccttg 298
Query: 735 agcatgtggagcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcc 794
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 297 agcatgtggaggagagtggtcttgccggcgttgtcgaggccgaggaagaggatcttggcc 238
Query: 795 tccttctgccacaggccgagggaggccagcaccccgtagaaccagtcccagaggaacatc 854
|| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 237 tctttctgccacaggccgagcgaggccagcaccccgtagaaccagtcccaaaggaacatc 178
Query: 855 t 855
|
Sbjct: 177 t 177
>gb|BE060252.3|BE060252 HVSMEg0011L20f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011L20f, mRNA sequence
Length = 540
Score = 448 bits (226), Expect = e-124
Identities = 313/342 (91%)
Strand = Plus / Minus
Query: 514 ggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctacca 573
|||||||||| ||||||| || ||||||| ||| ||||| || ||||||||||| ||||
Sbjct: 514 ggagagcatcaggctcctttttcgattcagtaaagcgctctttgtcatatgcatcaacca 455
Query: 574 ggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggt 633
||||||||||||||||||| |||||||||| || ||||| || || || ||||||||||
Sbjct: 454 agtatactacagcatcaacccttgcgtagtagtctttccagacccgtcgagcgatctggt 395
Query: 634 ggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcg 693
| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 394 gaccgccgagatcgaaggctttgaacttgatcttgccgatgctgagctcctccgacgtgg 335
Query: 694 ggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtgg 753
||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||
Sbjct: 334 ggtgctgcgtcggctggtgctgcaccagccgctcgtccttgagcatgtggaggagagtgg 275
Query: 754 tcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccga 813
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 274 tcttgccggcgttgtcgaggccgaggaagaggatcttggcctctttctgccacaggccga 215
Query: 814 gggaggccagcaccccgtagaaccagtcccagaggaacatct 855
| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 214 gcgaggccagcaccccgtagaaccagtcccaaaggaacatct 173
>gb|AV917497.1|AV917497 AV917497 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10c15 3', mRNA sequence
Length = 686
Score = 416 bits (210), Expect = e-115
Identities = 327/366 (89%)
Strand = Plus / Plus
Query: 269 gccctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaac 328
|||||||||||||||||| ||||||||||| || |||||||| |||||||||||||| ||
Sbjct: 319 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 378
Query: 329 aacactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcc 388
||||||||||||||| |||||||| || |||||||||||||| |||| || ||||||||
Sbjct: 379 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 438
Query: 389 cttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagc 448
|||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct: 439 cttcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgc 498
Query: 449 atatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatc 508
||||||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 499 atatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatc 558
Query: 509 agacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatc 568
||| ||||||||||| |||||||| || ||||||| ||| ||||| || |||||||||||
Sbjct: 559 agaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatc 618
Query: 569 taccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgat 628
|||| ||||||||||||||||||| |||||||||| || ||||| || || || |||||
Sbjct: 619 aaccaagtatactacagcatcaacccttgcgtagtagtctttccagacccgtcgagcgat 678
Query: 629 ctggtg 634
||||||
Sbjct: 679 ctggtg 684
>gb|AL500907.1|AL500907 AL500907 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02F13u 3', mRNA sequence
Length = 652
Score = 406 bits (205), Expect = e-112
Identities = 310/345 (89%)
Strand = Plus / Plus
Query: 269 gccctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaac 328
|||||||||||||||||| ||||||||||| || |||||||| |||||||||||||| ||
Sbjct: 275 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 334
Query: 329 aacactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcc 388
||||||||||||||| |||||||| || |||||||||||||| |||| || ||||||||
Sbjct: 335 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 394
Query: 389 cttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagc 448
|||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct: 395 cttcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgc 454
Query: 449 atatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatc 508
||||||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 455 atatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatc 514
Query: 509 agacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatc 568
||| ||||||||||| |||||||| || ||||||| ||| ||||| || |||||||||||
Sbjct: 515 agaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatc 574
Query: 569 taccaggtatactacagcatcaacctttgcgtagtaatccttcca 613
|||| ||||||||||||||||||| |||||||||| || |||||
Sbjct: 575 aaccaagtatactacagcatcaacccttgcgtagtagtctttcca 619
>gb|BJ465487.1|BJ465487 BJ465487 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29b24 5', mRNA sequence
Length = 667
Score = 404 bits (204), Expect = e-111
Identities = 303/336 (90%)
Strand = Plus / Minus
Query: 269 gccctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaac 328
|||||||||||||||||| ||||||||||| || |||||||| |||||||||||||| ||
Sbjct: 355 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 296
Query: 329 aacactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcc 388
||||||||||||||| |||||||| || |||||||||||||| |||| || ||||||||
Sbjct: 295 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 236
Query: 389 cttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagc 448
|||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct: 235 cttcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgc 176
Query: 449 atatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatc 508
||||||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 175 atatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatc 116
Query: 509 agacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatc 568
||| ||||||||||| |||||||| || ||||||| ||| ||||| || |||||||||||
Sbjct: 115 agaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatc 56
Query: 569 taccaggtatactacagcatcaacctttgcgtagta 604
|||| ||||||||||||||||||| ||||||||||
Sbjct: 55 aaccaagtatactacagcatcaacccttgcgtagta 20
>gb|BQ471183.1|BQ471183 HV01H06T HV Hordeum vulgare subsp. vulgare cDNA clone HV01H06
5-PRIME, mRNA sequence
Length = 700
Score = 391 bits (197), Expect = e-107
Identities = 488/585 (83%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
||||||| || ||||| || | ||||||||| || || || || ||||||||||| || |
Sbjct: 699 cctacttaatatactgcgacatccacttgaacccttcgccatatcccatcttgcggacga 640
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
||||||||||||||||| || || ||||||||||| |||| ||| | ||||||||||
Sbjct: 639 tgctgcacatgaagacctccagggggcggacattggactcgctgaggctcaccttgccct 580
Query: 391 tcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcat 450
| || || |||||||||||||| || | ||| || || ||||| || || ||||||||||
Sbjct: 579 tgccagtcgtgaagttgctaagacccaagtggtagcggagctcttcctctgaggcagcat 520
Query: 451 atgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcag 510
| ||||| || ||||||||||| ||||| || || || || |||||| ||||| || |
Sbjct: 519 aggggatgtcgatcttgttgcccaggatcaggaaggggacggtggccagcgaatcgtctg 460
Query: 511 acaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatcta 570
| ||||| || |||||||||||||| ||||| ||||| | ||| || ||||| || || |
Sbjct: 459 agaggagggcgtcgagctccttcttggattcggcaaacctctctttgtcataggcgtcca 400
Query: 571 ccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatct 630
| ||||| || || ||||||||||| || ||||||||||||||||| ||||| || ||||
Sbjct: 399 cgaggtacaccactgcatcaaccttggcatagtaatccttccacacacggcgggcaatct 340
Query: 631 ggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacg 690
| ||||| || | || || ||||||||||||||||| |||||||| |||||||| || |
Sbjct: 339 gatggcctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctcctcagaag 280
Query: 691 tcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcg 750
| |||| ||| || ||||| ||||| ||||||| ||||||||||||||||||||| ||||
Sbjct: 279 ttgggtactgtgtaggctgatgctgaaccaacctctcgtccttgagcatgtggaggagcg 220
Query: 751 tggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggc 810
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 219 tggtcttgccggcgttgtcgaggccgaggaaaaggatcttggcctccttctgccacagcc 160
Query: 811 cgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
|||| || || ||||||||||||||||||||| ||||||||||
Sbjct: 159 cgagcgacgcgagcaccccgtagaaccagtccacaaggaacatct 115
>gb|CA015435.1|CA015435 HT14E23r HT Hordeum vulgare subsp. vulgare cDNA clone HT14E23
5-PRIME, mRNA sequence
Length = 650
Score = 391 bits (197), Expect = e-107
Identities = 488/585 (83%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
||||||| || ||||| || | ||||||||| || || || || ||||||||||| || |
Sbjct: 610 cctacttaatatactgcgacatccacttgaacccttcgccatatcccatcttgcggacga 551
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
||||||||||||||||| || || ||||||||||| |||| ||| | ||||||||||
Sbjct: 550 tgctgcacatgaagacctccagggggcggacattggactcgctgaggctcaccttgccct 491
Query: 391 tcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcat 450
| || || |||||||||||||| || | ||| || || ||||| || || ||||||||||
Sbjct: 490 tgccagtcgtgaagttgctaagacccaagtggtagcggagctcttcctctgaggcagcat 431
Query: 451 atgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcag 510
| ||||| || ||||||||||| ||||| || || || || |||||| ||||| || |
Sbjct: 430 aggggatgtcgatcttgttgcccaggatcaggaaggggacggtggccagcgaatcgtctg 371
Query: 511 acaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatcta 570
| ||||| || |||||||||||||| ||||| ||||| | ||| || ||||| || || |
Sbjct: 370 agaggagggcgtcgagctccttcttggattcggcaaacctctctttgtcataggcgtcca 311
Query: 571 ccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatct 630
| ||||| || || ||||||||||| || ||||||||||||||||| ||||| || ||||
Sbjct: 310 cgaggtacaccactgcatcaaccttggcatagtaatccttccacacacggcgggcaatct 251
Query: 631 ggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacg 690
| ||||| || | || || ||||||||||||||||| |||||||| |||||||| || |
Sbjct: 250 gatggcctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctcctcagaag 191
Query: 691 tcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcg 750
| |||| ||| || ||||| ||||| ||||||| ||||||||||||||||||||| ||||
Sbjct: 190 ttgggtactgtgtaggctgatgctgaaccaacctctcgtccttgagcatgtggaggagcg 131
Query: 751 tggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggc 810
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 130 tggtcttgccggcgttgtcgaggccgaggaaaaggatcttggcctccttctgccacagcc 71
Query: 811 cgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
|||| || || ||||||||||||||||||||| ||||||||||
Sbjct: 70 cgagcgacgcgagcaccccgtagaaccagtccacaaggaacatct 26
>gb|CK123056.1|CK123056 BES1824101p18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P181 5-PRIME, mRNA sequence
Length = 783
Score = 391 bits (197), Expect = e-107
Identities = 488/585 (83%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
||||||| || ||||| || | ||||||||| || || || || ||||||||||| || |
Sbjct: 652 cctacttaatatactgcgacatccacttgaacccttcgccatatcccatcttgcggacga 593
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
||||||||||||||||| || || ||||||||||| |||| ||| | ||||||||||
Sbjct: 592 tgctgcacatgaagacctccagggggcggacattggactcgctgaggctcaccttgccct 533
Query: 391 tcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcat 450
| || || |||||||||||||| || | ||| || || ||||| || || ||||||||||
Sbjct: 532 tgccagtcgtgaagttgctaagacccaagtggtagcggagctcttcctctgaggcagcat 473
Query: 451 atgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcag 510
| ||||| || ||||||||||| ||||| || || || || |||||| ||||| || |
Sbjct: 472 aggggatgtcgatcttgttgcccaggatcaggaaggggacggtggccagcgaatcgtctg 413
Query: 511 acaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatcta 570
| ||||| || |||||||||||||| ||||| ||||| | ||| || ||||| || || |
Sbjct: 412 agaggagggcgtcgagctccttcttggattcggcaaacctctctttgtcataggcgtcca 353
Query: 571 ccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatct 630
| ||||| || || ||||||||||| || ||||||||||||||||| ||||| || ||||
Sbjct: 352 cgaggtacaccactgcatcaaccttggcatagtaatccttccacacacggcgggcaatct 293
Query: 631 ggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacg 690
| ||||| || | || || ||||||||||||||||| |||||||| |||||||| || |
Sbjct: 292 gatggcctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctcctcagaag 233
Query: 691 tcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcg 750
| |||| ||| || ||||| ||||| ||||||| ||||||||||||||||||||| ||||
Sbjct: 232 ttgggtactgtgtaggctgatgctgaaccaacctctcgtccttgagcatgtggaggagcg 173
Query: 751 tggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggc 810
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 172 tggtcttgccggcgttgtcgaggccgaggaaaaggatcttggcctccttctgccacagcc 113
Query: 811 cgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
|||| || || ||||||||||||||||||||| ||||||||||
Sbjct: 112 cgagcgacgcgagcaccccgtagaaccagtccacaaggaacatct 68
>gb|CK123982.1|CK123982 BES1824106f18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F186 5-PRIME, mRNA sequence
Length = 787
Score = 389 bits (196), Expect = e-106
Identities = 472/564 (83%)
Strand = Plus / Minus
Query: 292 cccacttgaaaccatcaccgtagcccatcttgcgaacaacactgcacatgaagacctcaa 351
|||||||||| || || || || ||||||||||| || | ||||||||||||||||| |
Sbjct: 631 cccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctcca 572
Query: 352 gtggacggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaa 411
| || ||||||||||| |||| ||| | ||||||||||| || || |||||||||||||
Sbjct: 571 gggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaa 512
Query: 412 ggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgc 471
| || | ||| || || ||||| || || ||||||||||| ||||| || ||||||||||
Sbjct: 511 gacccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgc 452
Query: 472 caaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcct 531
| ||||| || || || || |||||| ||||| || || ||||| || ||||||||||
Sbjct: 451 ccaggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcct 392
Query: 532 tctttgattcagcaaatcgctccttatcatatgcatctaccaggtatactacagcatcaa 591
|||| ||||| ||||| | ||| || ||||| || || || ||||| || || |||||||
Sbjct: 391 tcttggattcggcaaacctctctttgtcataggcgtccacgaggtacaccactgcatcaa 332
Query: 592 cctttgcgtagtaatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacg 651
|||| || ||||||||||||||||| ||||| || ||||| ||||| || | || || |
Sbjct: 331 ccttggcatagtaatccttccacacacggcgggcaatctgatggcctcctaaatcaaatg 272
Query: 652 ccttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggt 711
|||||||||||||||| |||||||| |||||||| || || |||| ||| || ||||| |
Sbjct: 271 ccttgaacttgatcttcccgatgctcagctcctcagaagttgggtactgtgtaggctgat 212
Query: 712 gctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcga 771
|||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 211 gctgaaccaacctctcgtccttgagcatgtggaggagcgtggtcttgccggcgttgtcga 152
Query: 772 ggccaaggaagaggatcttggcctccttctgccacaggccgagggaggccagcaccccgt 831
|||| ||||| |||||||||||||||||||||||||| ||||| || || ||||||||||
Sbjct: 151 ggccgaggaaaaggatcttggcctccttctgccacagcccgagcgacgcgagcaccccgt 92
Query: 832 agaaccagtcccagaggaacatct 855
||||||||||| ||||||||||
Sbjct: 91 agaaccagtccacaaggaacatct 68
>gb|AL505462.1|AL505462 AL505462 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08I20V 5', mRNA sequence
Length = 700
Score = 387 bits (195), Expect = e-106
Identities = 471/563 (83%)
Strand = Plus / Minus
Query: 293 ccacttgaaaccatcaccgtagcccatcttgcgaacaacactgcacatgaagacctcaag 352
||||||||| || || || || ||||||||||| || | ||||||||||||||||| ||
Sbjct: 671 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctccag 612
Query: 353 tggacggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 412
|| ||||||||||| |||| ||| | ||||||||||| || || ||||||||||||||
Sbjct: 611 ggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaag 552
Query: 413 gcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgcc 472
|| | ||| || || ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct: 551 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgcc 492
Query: 473 aaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcctt 532
||||| || || || || |||||| ||||| || || ||||| || |||||||||||
Sbjct: 491 caggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcctt 432
Query: 533 ctttgattcagcaaatcgctccttatcatatgcatctaccaggtatactacagcatcaac 592
||| ||||| ||||| | ||| || ||||| || || || ||||| || || ||||||||
Sbjct: 431 cttggattcggcaaacctctctttgtcataggcgtccacgaggtacaccactgcatcaac 372
Query: 593 ctttgcgtagtaatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgc 652
||| || ||||||||||||||||| ||||| || ||||| ||||| || | || || ||
Sbjct: 371 cttggcatagtaatccttccacacacggcgggcaatctgatggcctcctaaatcaaatgc 312
Query: 653 cttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtg 712
||||||||||||||| |||||||| |||||||| || || |||| ||| || ||||| ||
Sbjct: 311 cttgaacttgatcttcccgatgctcagctcctcagaagttgggtactgtgtaggctgatg 252
Query: 713 ctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcgag 772
||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 251 ctgaaccaacctctcgtccttgagcatgtggaggagcgtggtcttgccggcgttgtcgag 192
Query: 773 gccaaggaagaggatcttggcctccttctgccacaggccgagggaggccagcaccccgta 832
||| ||||| |||||||||||||||||||||||||| ||||| || || |||||||||||
Sbjct: 191 gccgaggaaaaggatcttggcctccttctgccacagcccgagcgacgcgagcaccccgta 132
Query: 833 gaaccagtcccagaggaacatct 855
|||||||||| ||||||||||
Sbjct: 131 gaaccagtccacaaggaacatct 109
>gb|BQ465083.1|BQ465083 HU02J14r HU Hordeum vulgare subsp. vulgare cDNA clone HU02J14
5-PRIME, mRNA sequence
Length = 651
Score = 387 bits (195), Expect = e-106
Identities = 471/563 (83%)
Strand = Plus / Minus
Query: 293 ccacttgaaaccatcaccgtagcccatcttgcgaacaacactgcacatgaagacctcaag 352
||||||||| || || || || ||||||||||| || | ||||||||||||||||| ||
Sbjct: 644 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctccag 585
Query: 353 tggacggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 412
|| ||||||||||| |||| ||| | ||||||||||| || || ||||||||||||||
Sbjct: 584 ggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaag 525
Query: 413 gcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgcc 472
|| | ||| || || ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct: 524 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgcc 465
Query: 473 aaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcctt 532
||||| || || || || |||||| ||||| || || ||||| || |||||||||||
Sbjct: 464 caggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcctt 405
Query: 533 ctttgattcagcaaatcgctccttatcatatgcatctaccaggtatactacagcatcaac 592
||| ||||| ||||| | ||| || ||||| || || || ||||| || || ||||||||
Sbjct: 404 cttggattcggcaaacctctctttgtcataggcgtccacgaggtacaccactgcatcaac 345
Query: 593 ctttgcgtagtaatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgc 652
||| || ||||||||||||||||| ||||| || ||||| ||||| || | || || ||
Sbjct: 344 cttggcatagtaatccttccacacacggcgggcaatctgatggcctcctaaatcaaatgc 285
Query: 653 cttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtg 712
||||||||||||||| |||||||| |||||||| || || |||| ||| || ||||| ||
Sbjct: 284 cttgaacttgatcttcccgatgctcagctcctcagaagttgggtactgtgtaggctgatg 225
Query: 713 ctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcgag 772
||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 224 ctgaaccaacctctcgtccttgagcatgtggaggagcgtggtcttgccggcgttgtcgag 165
Query: 773 gccaaggaagaggatcttggcctccttctgccacaggccgagggaggccagcaccccgta 832
||| ||||| |||||||||||||||||||||||||| ||||| || || |||||||||||
Sbjct: 164 gccgaggaaaaggatcttggcctccttctgccacagcccgagcgacgcgagcaccccgta 105
Query: 833 gaaccagtcccagaggaacatct 855
|||||||||| ||||||||||
Sbjct: 104 gaaccagtccacaaggaacatct 82
>gb|CA025362.1|CA025362 HZ51P06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51P06
5-PRIME, mRNA sequence
Length = 659
Score = 383 bits (193), Expect = e-105
Identities = 454/541 (83%)
Strand = Plus / Minus
Query: 315 cccatcttgcgaacaacactgcacatgaagacctcaagtggacggacattggagtcgcca 374
||||||||||| || | ||||||||||||||||| || || ||||||||||| ||||
Sbjct: 647 cccatcttgcggacgatgctgcacatgaagacctccagggggcggacattggactcgctg 588
Query: 375 aggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgataccgtagctcc 434
||| | ||||||||||| || || |||||||||||||| || | ||| || || |||||
Sbjct: 587 aggctcaccttgcccttgccagtcgtgaagttgctaagacccaagtggtagcggagctct 528
Query: 435 tcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaaatggaacattg 494
|| || ||||||||||| ||||| || ||||||||||| ||||| || || || || ||
Sbjct: 527 tcctctgaggcagcataggggatgtcgatcttgttgcccaggatcaggaaggggacggtg 468
Query: 495 gccaaagaatcatcagacaggagagcatcgagctccttctttgattcagcaaatcgctcc 554
|||| ||||| || || ||||| || |||||||||||||| ||||| ||||| | |||
Sbjct: 467 gccagcgaatcgtctgagaggagggcgtcgagctccttcttggattcggcaaacctctct 408
Query: 555 ttatcatatgcatctaccaggtatactacagcatcaacctttgcgtagtaatccttccac 614
|| ||||| || || || ||||| || || ||||||||||| || |||||||||||||||
Sbjct: 407 ttgtcataggcgtccacgaggtacaccactgcatcaaccttggcatagtaatccttccac 348
Query: 615 acgcggcgcgcgatctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatg 674
|| ||||| || ||||| ||||| || | || || ||||||||||||||||| ||||||
Sbjct: 347 acacggcgggcaatctgatggcctcctaaatcaaatgccttgaacttgatcttcccgatg 288
Query: 675 ctgagctcctccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttg 734
|| |||||||| || || |||| ||| || ||||| ||||| ||||||| ||||||||||
Sbjct: 287 ctcagctcctcagaagttgggtactgtgtaggctgatgctgaaccaacctctcgtccttg 228
Query: 735 agcatgtggagcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcc 794
||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 227 agcatgtggaggagcgtggtcttgccggcgttgtcgaggccgaggaaaaggatcttggcc 168
Query: 795 tccttctgccacaggccgagggaggccagcaccccgtagaaccagtcccagaggaacatc 854
|||||||||||||| ||||| || || ||||||||||||||||||||| |||||||||
Sbjct: 167 tccttctgccacagcccgagcgacgcgagcaccccgtagaaccagtccacaaggaacatc 108
Query: 855 t 855
|
Sbjct: 107 t 107
>gb|BU976147.1|BU976147 HA03D15r HA Hordeum vulgare subsp. vulgare cDNA clone HA03D15
5-PRIME, mRNA sequence
Length = 617
Score = 379 bits (191), Expect = e-103
Identities = 440/523 (84%)
Strand = Plus / Minus
Query: 333 ctgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcccttc 392
||||||||||||||||| || || ||||||||||| |||| ||| | |||||||||||
Sbjct: 608 ctgcacatgaagacctccagggggcggacattggactcgctgaggctcaccttgcccttg 549
Query: 393 ccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatat 452
|| || |||||||||||||| || | ||| || || ||||| || || |||||||||||
Sbjct: 548 ccagtcgtgaagttgctaagacccaagtggtagcggagctcttcctctgaggcagcatag 489
Query: 453 gggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagac 512
||||| || ||||||||||| ||||| || || || || |||||| ||||| || ||
Sbjct: 488 gggatgtcgatcttgttgcccaggatcaggaaggggacggtggccagcgaatcgtctgag 429
Query: 513 aggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctacc 572
||||| || |||||||||||||| ||||| ||||| | ||| || ||||| || || ||
Sbjct: 428 aggagggcgtcgagctccttcttggattcggcaaacctctctttgtcataggcgtccacg 369
Query: 573 aggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctgg 632
||||| || || ||||||||||| || ||||||||||||||||| ||||| || |||||
Sbjct: 368 aggtacaccactgcatcaaccttggcatagtaatccttccacacacggcgggcaatctga 309
Query: 633 tggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtc 692
||||| || | || || ||||||||||||||||| |||||||| |||||||| || ||
Sbjct: 308 tggcctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctcctcagaagtt 249
Query: 693 gggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtg 752
|||| ||| || ||||| ||||| ||||||| ||||||||||||||||||||| ||||||
Sbjct: 248 gggtactgtgtaggctgatgctgaaccaacctctcgtccttgagcatgtggaggagcgtg 189
Query: 753 gtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccg 812
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct: 188 gtcttgccggcgttgtcgaggccgaggaaaaggatcttggcctccttctgccacagcccg 129
Query: 813 agggaggccagcaccccgtagaaccagtcccagaggaacatct 855
|| || || ||||||||||||||||||||| ||||||||||
Sbjct: 128 agcgacgcgagcaccccgtagaaccagtccacaaggaacatct 86
>gb|BU987698.1|BU987698 HF15I04r HF Hordeum vulgare subsp. vulgare cDNA clone HF15I04
5-PRIME, mRNA sequence
Length = 550
Score = 379 bits (191), Expect = e-103
Identities = 440/523 (84%)
Strand = Plus / Minus
Query: 333 ctgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcccttc 392
||||||||||||||||| || || ||||||||||| |||| ||| | |||||||||||
Sbjct: 541 ctgcacatgaagacctccagggggcggacattggactcgctgaggctcaccttgcccttg 482
Query: 393 ccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatat 452
|| || |||||||||||||| || | ||| || || ||||| || || |||||||||||
Sbjct: 481 ccagtcgtgaagttgctaagacccaagtggtagcggagctcttcctctgaggcagcatag 422
Query: 453 gggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagac 512
||||| || ||||||||||| ||||| || || || || |||||| ||||| || ||
Sbjct: 421 gggatgtcgatcttgttgcccaggatcaggaaggggacggtggccagcgaatcgtctgag 362
Query: 513 aggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctacc 572
||||| || |||||||||||||| ||||| ||||| | ||| || ||||| || || ||
Sbjct: 361 aggagggcgtcgagctccttcttggattcggcaaacctctctttgtcataggcgtccacg 302
Query: 573 aggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctgg 632
||||| || || ||||||||||| || ||||||||||||||||| ||||| || |||||
Sbjct: 301 aggtacaccactgcatcaaccttggcatagtaatccttccacacacggcgggcaatctga 242
Query: 633 tggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtc 692
||||| || | || || ||||||||||||||||| |||||||| |||||||| || ||
Sbjct: 241 tggcctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctcctcagaagtt 182
Query: 693 gggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtg 752
|||| ||| || ||||| ||||| ||||||| ||||||||||||||||||||| ||||||
Sbjct: 181 gggtactgtgtaggctgatgctgaaccaacctctcgtccttgagcatgtggaggagcgtg 122
Query: 753 gtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccg 812
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct: 121 gtcttgccggcgttgtcgaggccgaggaaaaggatcttggcctccttctgccacagcccg 62
Query: 813 agggaggccagcaccccgtagaaccagtcccagaggaacatct 855
|| || || ||||||||||||||||||||| ||||||||||
Sbjct: 61 agcgacgcgagcaccccgtagaaccagtccacaaggaacatct 19
>gb|BJ549410.1|BJ549410 BJ549410 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33n23 5', mRNA sequence
Length = 608
Score = 379 bits (191), Expect = e-103
Identities = 470/563 (83%)
Strand = Plus / Minus
Query: 293 ccacttgaaaccatcaccgtagcccatcttgcgaacaacactgcacatgaagacctcaag 352
||||||||| || || || || ||||||||||| || | ||||||||||||||||| ||
Sbjct: 593 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctccag 534
Query: 353 tggacggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 412
|| ||||||||||| |||| ||| | ||||||||||| || || ||||||||||||||
Sbjct: 533 ggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaag 474
Query: 413 gcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgcc 472
|| | ||| || || ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct: 473 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgcc 414
Query: 473 aaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcctt 532
||||| || || || || |||||| ||||| || || ||||| || |||||||||||
Sbjct: 413 caggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcctt 354
Query: 533 ctttgattcagcaaatcgctccttatcatatgcatctaccaggtatactacagcatcaac 592
||| ||||| ||||| | ||| || ||||| || || || ||||| || || ||||||||
Sbjct: 353 cttggattcggcaaacctctctttgtcataggcgtccacgaggtacaccactgcatcaac 294
Query: 593 ctttgcgtagtaatccttccacacgcggcgcgcgatctggtggccgccgaggtcgaacgc 652
||| || ||||||||||||||||| ||||| || ||||| ||||| || | || || ||
Sbjct: 293 cttggcatagtaatccttccacacacggcgggcaatctgatggcctcctaaatcaaatgc 234
Query: 653 cttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtg 712
||||||||||||||| |||||||| |||||||| || || |||| ||| || ||||| ||
Sbjct: 233 cttgaacttgatcttcccgatgctcagctcctcagaagttgggtactgtgtaggctgatg 174
Query: 713 ctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcgag 772
||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 173 ctgaaccaacctctcgtccttgagcatgtggaggagcgtggtcttgccggcgttgtcgag 114
Query: 773 gccaaggaagaggatcttggcctccttctgccacaggccgagggaggccagcaccccgta 832
||| ||||| ||||||||||||||||||||||||| ||||| || || |||||||||||
Sbjct: 113 gccgaggaaaaggatcttggcctccttctgccacatcccgagcgacgcgagcaccccgta 54
Query: 833 gaaccagtcccagaggaacatct 855
|||||||||| ||||||||||
Sbjct: 53 gaaccagtccacaaggaacatct 31
>gb|BG343229.2|BG343229 HVSMEg0005C16f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005C16f, mRNA sequence
Length = 993
Score = 367 bits (185), Expect = e-100
Identities = 485/585 (82%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
||||||| || ||||| || | ||||||||| || || || || ||||||||||| || |
Sbjct: 656 cctacttaatatactgcgacatccacttgaacccttcgccatatcccatcttgcggacga 597
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
|||||||||||||| | || || ||||||||||| |||| ||| | ||||||||||
Sbjct: 596 tgctgcacatgaagactcccagggggcggacattggactcgctgaggctcaccttgccct 537
Query: 391 tcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcat 450
| || || |||||||||||||| || | ||| || || ||||| || || ||||||||||
Sbjct: 536 tgccagtcgtgaagttgctaagacccaagtggtagcggagctcttcctctgaggcagcat 477
Query: 451 atgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcag 510
| ||||| || ||||||||||| ||||| || || || || |||||| ||||| || |
Sbjct: 476 aggggatgtcgatcttgttgcccaggatcaggaaggggacggtggccagcgaatcgtctg 417
Query: 511 acaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatcta 570
| ||||| || |||||||||||||| ||||| ||||| | ||| || ||||| || || |
Sbjct: 416 agaggagggcgtcgagctccttcttggattcggcaaacctctctttgtcataggcgtcca 357
Query: 571 ccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatct 630
| ||||| || || ||||||||||| || ||||||||||||||||| ||||| || ||||
Sbjct: 356 cgaggtacaccactgcatcaaccttggcatagtaatccttccacacacggcgggcaatct 297
Query: 631 ggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacg 690
| ||||| || | || || ||||||||||||||||| |||||||| |||||||| || |
Sbjct: 296 gatggcctcctaaatcaaatgccttgaacttgatcttcccgatgctcagctcctcagaag 237
Query: 691 tcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcg 750
| |||| ||| || ||||| ||||| ||||||| ||||||||||||||||||||| ||||
Sbjct: 236 ttgggtactgtgtaggctgatgctgaaccaacctctcgtccttgagcatgtggaggagcg 177
Query: 751 tggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggc 810
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
Sbjct: 176 tggtcttgccggcgttgtcgaggccgaggaaaaggatcttggcctccttctgccacatcc 117
Query: 811 cgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
|||| || || ||||||||||||||||||||| ||||||||||
Sbjct: 116 cgagcgacgcgagcaccccgtagaaccagtccacaaggaacatct 72
>gb|BG344285.1|BG344285 HVSMEg0008J07f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0008J07f, mRNA sequence
Length = 828
Score = 349 bits (176), Expect = 1e-094
Identities = 218/232 (93%)
Strand = Plus / Minus
Query: 624 gcgatctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcc 683
||||| ||||| |||||||| ||||| || ||||||||||||||||||||| ||||||||
Sbjct: 450 gcgatatggtgaccgccgagatcgaaggctttgaacttgatcttgccgatgatgagctcc 391
Query: 684 tccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtgg 743
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 390 tccgacgtggggtgctgcgtcggctggtgctgcaccagccgctcgtccttgagcatgtgg 331
Query: 744 agcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgc 803
|| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 330 aggagagtggtcttgccggcgttgtcgaggccgaggaagaggatcttggcctctttctgc 271
Query: 804 cacaggccgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 270 cacaggccgagcgaggccagcaccccgtagaaccagtcccaaaggaacatct 219
>gb|BQ465827.1|BQ465827 HU04M21r HU Hordeum vulgare subsp. vulgare cDNA clone HU04M21
5-PRIME, mRNA sequence
Length = 558
Score = 347 bits (175), Expect = 4e-094
Identities = 400/475 (84%)
Strand = Plus / Minus
Query: 381 accttgcccttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttca 440
||||||||||| || || |||||||||||||| || | ||| || || ||||| || ||
Sbjct: 552 accttgcccttgccagtcgtgaagttgctaagacccaagtggtagcggagctcttcctct 493
Query: 441 gaggcagcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaa 500
||||||||||| ||||| || ||||||||||| ||||| || || || || ||||||
Sbjct: 492 gaggcagcataggggatgtcgatcttgttgcccaggatcaggaaggggacggtggccagc 433
Query: 501 gaatcatcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatca 560
||||| || || ||||| || |||||||||||||| ||||| ||||| | ||| || |||
Sbjct: 432 gaatcgtctgagaggagggcgtcgagctccttcttggattcggcaaacctctctttgtca 373
Query: 561 tatgcatctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcgg 620
|| || || || ||||| || || ||||||||||| || ||||||||||||||||| |||
Sbjct: 372 taggcgtccacgaggtacaccactgcatcaaccttggcatagtaatccttccacacacgg 313
Query: 621 cgcgcgatctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagc 680
|| || ||||| ||||| || | || || ||||||||||||||||| |||||||| |||
Sbjct: 312 cgggcaatctgatggcctcctaaatcaaatgccttgaacttgatcttcccgatgctcagc 253
Query: 681 tcctccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatg 740
||||| || || |||| ||| || ||||| ||||| ||||||| ||||||||||||||||
Sbjct: 252 tcctcagaagttgggtactgtgtaggctgatgctgaaccaacctctcgtccttgagcatg 193
Query: 741 tggagcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttc 800
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 192 tggaggagcgtggtcttgccggcgttgtcgaggccgaggaaaaggatcttggcctccttc 133
Query: 801 tgccacaggccgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
|||||||| ||||| || || ||||||||||||||||||||| ||||||||||
Sbjct: 132 tgccacagcccgagcgacgcgagcaccccgtagaaccagtccacaaggaacatct 78
>gb|CA025118.1|CA025118 HZ51E05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51E05
5-PRIME, mRNA sequence
Length = 601
Score = 347 bits (175), Expect = 4e-094
Identities = 400/475 (84%)
Strand = Plus / Minus
Query: 381 accttgcccttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttca 440
||||||||||| || || |||||||||||||| || | ||| || || ||||| || ||
Sbjct: 581 accttgcccttgccagtcgtgaagttgctaagacccaagtggtagcggagctcttcctct 522
Query: 441 gaggcagcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaa 500
||||||||||| ||||| || ||||||||||| ||||| || || || || ||||||
Sbjct: 521 gaggcagcataggggatgtcgatcttgttgcccaggatcaggaaggggacggtggccagc 462
Query: 501 gaatcatcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatca 560
||||| || || ||||| || |||||||||||||| ||||| ||||| | ||| || |||
Sbjct: 461 gaatcgtctgagaggagggcgtcgagctccttcttggattcggcaaacctctctttgtca 402
Query: 561 tatgcatctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcgg 620
|| || || || ||||| || || ||||||||||| || ||||||||||||||||| |||
Sbjct: 401 taggcgtccacgaggtacaccactgcatcaaccttggcatagtaatccttccacacacgg 342
Query: 621 cgcgcgatctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagc 680
|| || ||||| ||||| || | || || ||||||||||||||||| |||||||| |||
Sbjct: 341 cgggcaatctgatggcctcctaaatcaaatgccttgaacttgatcttcccgatgctcagc 282
Query: 681 tcctccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatg 740
||||| || || |||| ||| || ||||| ||||| ||||||| ||||||||||||||||
Sbjct: 281 tcctcagaagttgggtactgtgtaggctgatgctgaaccaacctctcgtccttgagcatg 222
Query: 741 tggagcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttc 800
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 221 tggaggagcgtggtcttgccggcgttgtcgaggccgaggaaaaggatcttggcctccttc 162
Query: 801 tgccacaggccgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
|||||||| ||||| || || ||||||||||||||||||||| ||||||||||
Sbjct: 161 tgccacagcccgagcgacgcgagcaccccgtagaaccagtccacaaggaacatct 107
>gb|CA025207.1|CA025207 HZ51I05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51I05
5-PRIME, mRNA sequence
Length = 595
Score = 347 bits (175), Expect = 4e-094
Identities = 400/475 (84%)
Strand = Plus / Minus
Query: 381 accttgcccttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttca 440
||||||||||| || || |||||||||||||| || | ||| || || ||||| || ||
Sbjct: 581 accttgcccttgccagtcgtgaagttgctaagacccaagtggtagcggagctcttcctct 522
Query: 441 gaggcagcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaa 500
||||||||||| ||||| || ||||||||||| ||||| || || || || ||||||
Sbjct: 521 gaggcagcataggggatgtcgatcttgttgcccaggatcaggaaggggacggtggccagc 462
Query: 501 gaatcatcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatca 560
||||| || || ||||| || |||||||||||||| ||||| ||||| | ||| || |||
Sbjct: 461 gaatcgtctgagaggagggcgtcgagctccttcttggattcggcaaacctctctttgtca 402
Query: 561 tatgcatctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcgg 620
|| || || || ||||| || || ||||||||||| || ||||||||||||||||| |||
Sbjct: 401 taggcgtccacgaggtacaccactgcatcaaccttggcatagtaatccttccacacacgg 342
Query: 621 cgcgcgatctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagc 680
|| || ||||| ||||| || | || || ||||||||||||||||| |||||||| |||
Sbjct: 341 cgggcaatctgatggcctcctaaatcaaatgccttgaacttgatcttcccgatgctcagc 282
Query: 681 tcctccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatg 740
||||| || || |||| ||| || ||||| ||||| ||||||| ||||||||||||||||
Sbjct: 281 tcctcagaagttgggtactgtgtaggctgatgctgaaccaacctctcgtccttgagcatg 222
Query: 741 tggagcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttc 800
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 221 tggaggagcgtggtcttgccggcgttgtcgaggccgaggaaaaggatcttggcctccttc 162
Query: 801 tgccacaggccgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
|||||||| ||||| || || ||||||||||||||||||||| ||||||||||
Sbjct: 161 tgccacagcccgagcgacgcgagcaccccgtagaaccagtccacaaggaacatct 107
>gb|CA029545.1|CA029545 HZ65I11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65I11
5-PRIME, mRNA sequence
Length = 594
Score = 347 bits (175), Expect = 4e-094
Identities = 400/475 (84%)
Strand = Plus / Minus
Query: 381 accttgcccttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttca 440
||||||||||| || || |||||||||||||| || | ||| || || ||||| || ||
Sbjct: 581 accttgcccttgccagtcgtgaagttgctaagacccaagtggtagcggagctcttcctct 522
Query: 441 gaggcagcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaa 500
||||||||||| ||||| || ||||||||||| ||||| || || || || ||||||
Sbjct: 521 gaggcagcataggggatgtcgatcttgttgcccaggatcaggaaggggacggtggccagc 462
Query: 501 gaatcatcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatca 560
||||| || || ||||| || |||||||||||||| ||||| ||||| | ||| || |||
Sbjct: 461 gaatcgtctgagaggagggcgtcgagctccttcttggattcggcaaacctctctttgtca 402
Query: 561 tatgcatctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcgg 620
|| || || || ||||| || || ||||||||||| || ||||||||||||||||| |||
Sbjct: 401 taggcgtccacgaggtacaccactgcatcaaccttggcatagtaatccttccacacacgg 342
Query: 621 cgcgcgatctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagc 680
|| || ||||| ||||| || | || || ||||||||||||||||| |||||||| |||
Sbjct: 341 cgggcaatctgatggcctcctaaatcaaatgccttgaacttgatcttcccgatgctcagc 282
Query: 681 tcctccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatg 740
||||| || || |||| ||| || ||||| ||||| ||||||| ||||||||||||||||
Sbjct: 281 tcctcagaagttgggtactgtgtaggctgatgctgaaccaacctctcgtccttgagcatg 222
Query: 741 tggagcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttc 800
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 221 tggaggagcgtggtcttgccggcgttgtcgaggccgaggaaaaggatcttggcctccttc 162
Query: 801 tgccacaggccgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
|||||||| ||||| || || ||||||||||||||||||||| ||||||||||
Sbjct: 161 tgccacagcccgagcgacgcgagcaccccgtagaaccagtccacaaggaacatct 107
>gb|CA029693.1|CA029693 HZ65O24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65O24
5-PRIME, mRNA sequence
Length = 600
Score = 347 bits (175), Expect = 4e-094
Identities = 400/475 (84%)
Strand = Plus / Minus
Query: 381 accttgcccttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttca 440
||||||||||| || || |||||||||||||| || | ||| || || ||||| || ||
Sbjct: 580 accttgcccttgccagtcgtgaagttgctaagacccaagtggtagcggagctcttcctct 521
Query: 441 gaggcagcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaa 500
||||||||||| ||||| || ||||||||||| ||||| || || || || ||||||
Sbjct: 520 gaggcagcataggggatgtcgatcttgttgcccaggatcaggaaggggacggtggccagc 461
Query: 501 gaatcatcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatca 560
||||| || || ||||| || |||||||||||||| ||||| ||||| | ||| || |||
Sbjct: 460 gaatcgtctgagaggagggcgtcgagctccttcttggattcggcaaacctctctttgtca 401
Query: 561 tatgcatctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcgg 620
|| || || || ||||| || || ||||||||||| || ||||||||||||||||| |||
Sbjct: 400 taggcgtccacgaggtacaccactgcatcaaccttggcatagtaatccttccacacacgg 341
Query: 621 cgcgcgatctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagc 680
|| || ||||| ||||| || | || || ||||||||||||||||| |||||||| |||
Sbjct: 340 cgggcaatctgatggcctcctaaatcaaatgccttgaacttgatcttcccgatgctcagc 281
Query: 681 tcctccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatg 740
||||| || || |||| ||| || ||||| ||||| ||||||| ||||||||||||||||
Sbjct: 280 tcctcagaagttgggtactgtgtaggctgatgctgaaccaacctctcgtccttgagcatg 221
Query: 741 tggagcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttc 800
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 220 tggaggagcgtggtcttgccggcgttgtcgaggccgaggaaaaggatcttggcctccttc 161
Query: 801 tgccacaggccgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
|||||||| ||||| || || ||||||||||||||||||||| ||||||||||
Sbjct: 160 tgccacagcccgagcgacgcgagcaccccgtagaaccagtccacaaggaacatct 106
>gb|BU979830.1|BU979830 HA17G20r HA Hordeum vulgare subsp. vulgare cDNA clone HA17G20
5-PRIME, mRNA sequence
Length = 403
Score = 341 bits (172), Expect = 3e-092
Identities = 217/232 (93%)
Strand = Plus / Minus
Query: 624 gcgatctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcc 683
||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct: 390 gcgatctggtgaccgccgagatcgaaggctttgaacttgatcttgccgatgctgagctcc 331
Query: 684 tccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtgg 743
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 330 tccgacgtggggtgctgcgtcggctggtgctgcaccagccgctcgtccttgagcatgtgg 271
Query: 744 agcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgc 803
|| || |||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct: 270 aggagagtggtcttgccggcgttgtcgaggccgagcaagaggatcttggcctctttctgc 211
Query: 804 cacaggccgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
||||||||||| ||| |||||||||||||||||||||||| ||||||||||
Sbjct: 210 cacaggccgagcgagaacagcaccccgtagaaccagtcccaaaggaacatct 159
>gb|CA025053.1|CA025053 HZ51B09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51B09
5-PRIME, mRNA sequence
Length = 601
Score = 341 bits (172), Expect = 3e-092
Identities = 399/475 (84%)
Strand = Plus / Minus
Query: 381 accttgcccttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttca 440
||||||||||| || || |||||||||||||| | | ||| || || ||||| || ||
Sbjct: 581 accttgcccttgccagtcgtgaagttgctaagacncaagtggtagcggagctcttcctct 522
Query: 441 gaggcagcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaa 500
||||||||||| ||||| || ||||||||||| ||||| || || || || ||||||
Sbjct: 521 gaggcagcataggggatgtcgatcttgttgcccaggatcaggaaggggacggtggccagc 462
Query: 501 gaatcatcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatca 560
||||| || || ||||| || |||||||||||||| ||||| ||||| | ||| || |||
Sbjct: 461 gaatcgtctgagaggagggcgtcgagctccttcttggattcggcaaacctctctttgtca 402
Query: 561 tatgcatctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcgg 620
|| || || || ||||| || || ||||||||||| || ||||||||||||||||| |||
Sbjct: 401 taggcgtccacgaggtacaccactgcatcaaccttggcatagtaatccttccacacacgg 342
Query: 621 cgcgcgatctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagc 680
|| || ||||| ||||| || | || || ||||||||||||||||| |||||||| |||
Sbjct: 341 cgggcaatctgatggcctcctaaatcaaatgccttgaacttgatcttcccgatgctcagc 282
Query: 681 tcctccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatg 740
||||| || || |||| ||| || ||||| ||||| ||||||| ||||||||||||||||
Sbjct: 281 tcctcagaagttgggtactgtgtaggctgatgctgaaccaacctctcgtccttgagcatg 222
Query: 741 tggagcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttc 800
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 221 tggaggagcgtggtcttgccggcgttgtcgaggccgaggaaaaggatcttggcctccttc 162
Query: 801 tgccacaggccgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
|||||||| ||||| || || ||||||||||||||||||||| ||||||||||
Sbjct: 161 tgccacagcccgagcgacgcgagcaccccgtagaaccagtccacaaggaacatct 107
>gb|CV054680.1|CV054680 BNEL112b2 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL112b2 5' similar to putative
ras-like small GTP binding ptotein, mRNA sequence
Length = 707
Score = 339 bits (171), Expect = 1e-091
Identities = 473/567 (83%), Gaps = 5/567 (0%)
Strand = Plus / Minus
Query: 274 acttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacac 333
|||||||||||||||| | ||| |||||||| || || |||||||||||||| || | |
Sbjct: 658 acttgatgtactgggacatccatttgaaacc-tctccatagcccatcttgcggacgatgc 600
Query: 334 tgcacatgaagacctcaagtggacggacattggagtc-gccaaggttgaccttgcccttc 392
|||||||||| |||||||| || || || || || || | |||| || || |||||||||
Sbjct: 599 tgcacatgaacacctcaaggggccgcacgtttgaatccgacaag-ttcacgttgcccttc 541
Query: 393 ccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatat 452
|| || ||||||||||| || || |||| || || |||||||| ||||| || || ||
Sbjct: 540 ccagtggtgaagttgctcagcccaaggtagtagcggagctcctcctcagatgctgcg-at 482
Query: 453 ggg-atatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcaga 511
||| || ||||||||||| || || | ||| || || ||||| |||| || ||||| ||
Sbjct: 481 gggtatgtcaatcttgttacccagtacgaggaaaggcacattcgccagggagtcatctga 422
Query: 512 caggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctac 571
|| || | |||||||||||||| || || ||||| || ||||| ||| || || ||
Sbjct: 421 aagaaggccgtcgagctccttcttagactctgcaaaccgttccttgtcagcggcgtccac 362
Query: 572 caggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctg 631
|| ||| || || ||||| ||||| |||||||| |||||||| || ||||| ||||||||
Sbjct: 361 caagtaaacaaccgcatccaccttggcgtagtagtccttccagactcggcgggcgatctg 302
Query: 632 gtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgt 691
|||||| ||||| ||||| | |||||||||||||| |||||||| ||||||||||||||
Sbjct: 301 gtggccaccgagatcgaaggtcttgaacttgatctgtccgatgctcagctcctccgacgt 242
Query: 692 cgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgt 751
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| || ||
Sbjct: 241 cgggtactgcgtcggctggtgctgcaccagccgctcgtccttgagcatgtggaggagggt 182
Query: 752 ggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggcc 811
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 181 ggtcttgccagcgttgtccaggccgaggaagaggatcttggcctccttctgccacagccc 122
Query: 812 gagggaggccagcaccccgtagaacca 838
|| || ||||||||||||||||||||
Sbjct: 121 cagcgacgccagcaccccgtagaacca 95
>gb|BJ467628.1|BJ467628 BJ467628 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29b24 3', mRNA sequence
Length = 686
Score = 335 bits (169), Expect = 2e-090
Identities = 280/317 (88%), Gaps = 1/317 (0%)
Strand = Plus / Plus
Query: 269 gccctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaac 328
|||||||||||||||||| ||||||||||| || |||||||| |||||||||||||| ||
Sbjct: 370 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 429
Query: 329 aacactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcc 388
||||||||||||||| |||||||| || |||||||||||||| |||| || ||||||||
Sbjct: 430 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 489
Query: 389 cttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagc 448
|||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct: 490 cttcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgc 549
Query: 449 atatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatc 508
||||||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 550 atatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatc 609
Query: 509 agacaggagagcatcgagctccttctttgattcagcaaatcgctc-cttatcatatgcat 567
| | ||||||||||| |||||||| || |||||| ||| ||||| || ||||||||||
Sbjct: 610 anaaaggagagcatcaagctcctttttcgattcantaaagcgctcttttgtcatatgcat 669
Query: 568 ctaccaggtatactaca 584
|||| |||||||||
Sbjct: 670 naaccaantatactaca 686
>gb|BI780955.2|BI780955 EBma05_SQ001_K18_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ001_K18 5', mRNA sequence
Length = 542
Score = 335 bits (169), Expect = 2e-090
Identities = 385/457 (84%)
Strand = Plus / Minus
Query: 399 gtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatgggata 458
|||||||||||||| || | ||| || || ||||| || || ||||||||||| |||||
Sbjct: 538 gtgaagttgctaagacccaagtggtagcggagctcttcctctgaggcagcataggggatg 479
Query: 459 tcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacaggaga 518
|| ||||||||||| ||||| || || || || |||||| ||||| || || |||||
Sbjct: 478 tcgatcttgttgcccaggatcaggaaggggacggtggccagcgaatcgtctgagaggagg 419
Query: 519 gcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccaggtat 578
|| |||||||||||||| ||||| ||||| | ||| || ||||| || || || |||||
Sbjct: 418 gcgtcgagctccttcttggattcggcaaacctctctttgtcataggcgtccacgaggtac 359
Query: 579 actacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtggccg 638
|| || ||||||||||| || ||||||||||||||||| ||||| || ||||| |||||
Sbjct: 358 accactgcatcaaccttggcatagtaatccttccacacacggcgggcaatctgatggcct 299
Query: 639 ccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgc 698
|| | || || ||||||||||||||||| |||||||| |||||||| || || |||| |
Sbjct: 298 cctaaatcaaatgccttgaacttgatcttcccgatgctcagctcctcagaagttgggtac 239
Query: 699 tgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttg 758
|| || ||||| ||||| ||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 238 tgtgtaggctgatgctgaaccaacctctcgtccttgagcatgtggaggagcgtggtcttg 179
Query: 759 ccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagggag 818
||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 178 ccggcgttgtcgaggccgaggaaaaggatcttggcctccttctgccacagcccgagcgac 119
Query: 819 gccagcaccccgtagaaccagtcccagaggaacatct 855
|| ||||||||||||||||||||| ||||||||||
Sbjct: 118 gcgagcaccccgtagaaccagtccacaaggaacatct 82
>gb|BM096569.2|BM096569 EBma05_SQ001_M03_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ001_M03 5', mRNA sequence
Length = 550
Score = 335 bits (169), Expect = 2e-090
Identities = 385/457 (84%)
Strand = Plus / Minus
Query: 399 gtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatgggata 458
|||||||||||||| || | ||| || || ||||| || || ||||||||||| |||||
Sbjct: 538 gtgaagttgctaagacccaagtggtagcggagctcttcctctgaggcagcataggggatg 479
Query: 459 tcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacaggaga 518
|| ||||||||||| ||||| || || || || |||||| ||||| || || |||||
Sbjct: 478 tcgatcttgttgcccaggatcaggaaggggacggtggccagcgaatcgtctgagaggagg 419
Query: 519 gcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccaggtat 578
|| |||||||||||||| ||||| ||||| | ||| || ||||| || || || |||||
Sbjct: 418 gcgtcgagctccttcttggattcggcaaacctctctttgtcataggcgtccacgaggtac 359
Query: 579 actacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtggccg 638
|| || ||||||||||| || ||||||||||||||||| ||||| || ||||| |||||
Sbjct: 358 accactgcatcaaccttggcatagtaatccttccacacacggcgggcaatctgatggcct 299
Query: 639 ccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgc 698
|| | || || ||||||||||||||||| |||||||| |||||||| || || |||| |
Sbjct: 298 cctaaatcaaatgccttgaacttgatcttcccgatgctcagctcctcagaagttgggtac 239
Query: 699 tgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttg 758
|| || ||||| ||||| ||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 238 tgtgtaggctgatgctgaaccaacctctcgtccttgagcatgtggaggagcgtggtcttg 179
Query: 759 ccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagggag 818
||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 178 ccggcgttgtcgaggccgaggaaaaggatcttggcctccttctgccacagcccgagcgac 119
Query: 819 gccagcaccccgtagaaccagtcccagaggaacatct 855
|| ||||||||||||||||||||| ||||||||||
Sbjct: 118 gcgagcaccccgtagaaccagtccacaaggaacatct 82
>gb|AJ463546.1|AJ463546 AJ463546 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200087G05F1, mRNA sequence
Length = 420
Score = 329 bits (166), Expect = 1e-088
Identities = 238/262 (90%)
Strand = Plus / Minus
Query: 269 gccctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaac 328
|||||||||||||||||| ||||||||||| || |||||||| |||||||||||||| ||
Sbjct: 262 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 203
Query: 329 aacactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcc 388
||||||||||||||| |||||||| || |||||||||||||| |||| || ||||||||
Sbjct: 202 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 143
Query: 389 cttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagc 448
|||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct: 142 cttcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgc 83
Query: 449 atatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatc 508
||||||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 82 atatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatc 23
Query: 509 agacaggagagcatcgagctcc 530
||| ||||||||||| ||||||
Sbjct: 22 agaaaggagagcatcaagctcc 1
>gb|BF628899.2|BF628899 HVSMEb0009C03f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009C03f, mRNA sequence
Length = 773
Score = 319 bits (161), Expect = 1e-085
Identities = 278/317 (87%)
Strand = Plus / Minus
Query: 522 tcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccaggtatact 581
|||||||||||||| || || ||||| || ||||| ||| || || |||| ||| ||
Sbjct: 476 tcgagctccttcttagactctgcaaaccgttccttgtcagcggcgtccaccaagtaaaca 417
Query: 582 acagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtggccgccg 641
|| ||||| ||||| |||||||| |||||||| || ||||| |||||||||||||| |||
Sbjct: 416 accgcatccaccttggcgtagtagtccttccagactcggcgggcgatctggtggccaccg 357
Query: 642 aggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgctgc 701
|| ||||| | |||||||||||||| |||||||| ||||||||||||||||||| ||||
Sbjct: 356 agatcgaaggtcttgaacttgatctgtccgatgctcagctcctccgacgtcgggtactgc 297
Query: 702 gtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgccg 761
||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||
Sbjct: 296 gtcggctggtgctgcaccagccgctcgtccttgagcatgtggaggagggtggtcttgcca 237
Query: 762 gcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagggaggcc 821
|||||||| ||||| |||||||||||||||||||||||||||||||| || || || |||
Sbjct: 236 gcgttgtccaggccgaggaagaggatcttggcctccttctgccacagccccagcgacgcc 177
Query: 822 agcaccccgtagaacca 838
|||||||||||||||||
Sbjct: 176 agcaccccgtagaacca 160
>gb|BG344957.1|BG344957 HVSMEg0018A19f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018A19f, mRNA sequence
Length = 634
Score = 319 bits (161), Expect = 1e-085
Identities = 278/317 (87%)
Strand = Plus / Minus
Query: 522 tcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccaggtatact 581
|||||||||||||| || || ||||| || ||||| ||| || || |||| ||| ||
Sbjct: 460 tcgagctccttcttagactctgcaaaccgttccttgtcagcggcgtccaccaagtaaaca 401
Query: 582 acagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatctggtggccgccg 641
|| ||||| ||||| |||||||| |||||||| || ||||| |||||||||||||| |||
Sbjct: 400 accgcatccaccttggcgtagtagtccttccagactcggcgggcgatctggtggccaccg 341
Query: 642 aggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgctgc 701
|| ||||| | |||||||||||||| |||||||| ||||||||||||||||||| ||||
Sbjct: 340 agatcgaaggtcttgaacttgatctgtccgatgctcagctcctccgacgtcgggtactgc 281
Query: 702 gtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgccg 761
||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||
Sbjct: 280 gtcggctggtgctgcaccagccgctcgtccttgagcatgtggaggagggtggtcttgcca 221
Query: 762 gcgttgtcgaggccaaggaagaggatcttggcctccttctgccacaggccgagggaggcc 821
|||||||| ||||| |||||||||||||||||||||||||||||||| || || || |||
Sbjct: 220 gcgttgtccaggccgaggaagaggatcttggcctccttctgccacagccccagcgacgcc 161
Query: 822 agcaccccgtagaacca 838
|||||||||||||||||
Sbjct: 160 agcaccccgtagaacca 144
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 183,590
Number of Sequences: 312970
Number of extensions: 183590
Number of successful extensions: 53558
Number of sequences better than 0.5: 115
Number of HSP's better than 0.5 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53318
Number of HSP's gapped (non-prelim): 210
length of query: 1019
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1000
effective length of database: 169,188,109
effective search space: 169188109000
effective search space used: 169188109000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)