BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440958.2.1
(791 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL504432.1|AL504432 AL504432 Hordeum vulgare Barke roots... 50 1e-004
gb|BF259471.1|BF259471 HVSMEf0019D06f Hordeum vulgare seedl... 50 1e-004
gb|AV913364.1|AV913364 AV913364 K. Sato unpublished cDNA li... 50 1e-004
gb|AV918663.1|AV918663 AV918663 K. Sato unpublished cDNA li... 50 1e-004
gb|BF265921.2|BF265921 HV_CEa0013K24f Hordeum vulgare seedl... 40 0.11
gb|BM817329.1|BM817329 HC105E06_T3.ab1 HC Hordeum vulgare s... 40 0.11
gb|BQ458442.1|BQ458442 HA05D15r HA Hordeum vulgare subsp. v... 40 0.11
gb|BU974771.1|BU974771 HB29A24r BC Hordeum vulgare subsp. v... 40 0.11
gb|CB877071.1|CB877071 HP03H10T HP Hordeum vulgare subsp. v... 40 0.11
gb|CB879734.1|CB879734 HP03H10w HP Hordeum vulgare subsp. v... 40 0.11
gb|BF628874.2|BF628874 HVSMEb0009A12f Hordeum vulgare seedl... 38 0.43
gb|BI952636.1|BI952636 HVSMEm0007E08f Hordeum vulgare green... 38 0.43
gb|BE215761.2|BE215761 HV_CEb0008G18f Hordeum vulgare seedl... 38 0.43
gb|BJ452098.1|BJ452098 BJ452098 K. Sato unpublished cDNA li... 38 0.43
gb|BJ470121.1|BJ470121 BJ470121 K. Sato unpublished cDNA li... 38 0.43
gb|BJ470332.1|BJ470332 BJ470332 K. Sato unpublished cDNA li... 38 0.43
gb|BU980530.1|BU980530 HA20O23r HA Hordeum vulgare subsp. v... 38 0.43
gb|CA033046.1|CA033046 HX14P07r HX Hordeum vulgare subsp. v... 38 0.43
>gb|AL504432.1|AL504432 AL504432 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05E10V 5', mRNA sequence
Length = 377
Score = 50.1 bits (25), Expect = 1e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 94 aggccatcgcgaaagcgttcccgcacctggagtgcagcgt 133
|||||||||||| |||||||||||| | |||||||||||
Sbjct: 197 aggccatcgcgacagcgttcccgcangtcgagtgcagcgt 236
>gb|BF259471.1|BF259471 HVSMEf0019D06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019D06f, mRNA sequence
Length = 587
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 252 catgactggggtgatgccgactgtgtcaagatactgaagaactgcaagaaggc 304
||||| |||||||||| ||||||||||||||||| || || |||||| ||||
Sbjct: 349 catgattggggtgatgaagactgtgtcaagatactaaaaaaatgcaaggaggc 401
>gb|AV913364.1|AV913364 AV913364 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21m21 5', mRNA sequence
Length = 665
Score = 50.1 bits (25), Expect = 1e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 179 cgtgaagtatgtcgccggtgacatgttcgagagcgtt 215
|||||||| |||||||| ||||||||||||||||||
Sbjct: 365 cgtgaagttcgtcgccggcgacatgttcgagagcgtt 401
>gb|AV918663.1|AV918663 AV918663 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21m21 3', mRNA sequence
Length = 612
Score = 50.1 bits (25), Expect = 1e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 179 cgtgaagtatgtcgccggtgacatgttcgagagcgtt 215
|||||||| |||||||| ||||||||||||||||||
Sbjct: 260 cgtgaagttcgtcgccggcgacatgttcgagagcgtt 224
>gb|BF265921.2|BF265921 HV_CEa0013K24f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013K24f, mRNA sequence
Length = 766
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 ctccctcgtcgacgtcggcg 72
||||||||||||||||||||
Sbjct: 676 ctccctcgtcgacgtcggcg 695
>gb|BM817329.1|BM817329 HC105E06_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105E06_T3.ab1 similar to Hexaprenyldihydroxybenzoate
methyltransferase,(S)-scoulerine 9-O-methyltransferase,
mRNA sequence
Length = 885
Score = 40.1 bits (20), Expect = 0.11
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 318 ggaggcaaggtgataatactggatatcgtggttgga 353
||||| ||||||||||| ||||||| |||||||||
Sbjct: 564 ggagggaaggtgataatcatggatatggtggttgga 599
>gb|BQ458442.1|BQ458442 HA05D15r HA Hordeum vulgare subsp. vulgare cDNA clone HA05D15
5-PRIME, mRNA sequence
Length = 432
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 ctccctcgtcgacgtcggcg 72
||||||||||||||||||||
Sbjct: 396 ctccctcgtcgacgtcggcg 415
>gb|BU974771.1|BU974771 HB29A24r BC Hordeum vulgare subsp. vulgare cDNA clone HB29A24
5-PRIME, mRNA sequence
Length = 667
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 ctccctcgtcgacgtcggcg 72
||||||||||||||||||||
Sbjct: 83 ctccctcgtcgacgtcggcg 102
>gb|CB877071.1|CB877071 HP03H10T HP Hordeum vulgare subsp. vulgare cDNA clone HP03H10
5-PRIME, mRNA sequence
Length = 587
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 ctccctcgtcgacgtcggcg 72
||||||||||||||||||||
Sbjct: 28 ctccctcgtcgacgtcggcg 47
>gb|CB879734.1|CB879734 HP03H10w HP Hordeum vulgare subsp. vulgare cDNA clone HP03H10
3-PRIME, mRNA sequence
Length = 628
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 53 ctccctcgtcgacgtcggcg 72
||||||||||||||||||||
Sbjct: 608 ctccctcgtcgacgtcggcg 589
>gb|BF628874.2|BF628874 HVSMEb0009A12f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009A12f, mRNA sequence
Length = 875
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 433 tcgagcgagatgagcgagagtggaagaagat 463
|||| |||||||||| ||||||||||||||
Sbjct: 285 tcgaacgagatgagcaggagtggaagaagat 315
>gb|BI952636.1|BI952636 HVSMEm0007E08f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007E08f, mRNA sequence
Length = 421
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 58 tcgtcgacgtcggcggcgg 76
|||||||||||||||||||
Sbjct: 141 tcgtcgacgtcggcggcgg 159
>gb|BE215761.2|BE215761 HV_CEb0008G18f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0008G18f, mRNA sequence
Length = 496
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 58 tcgtcgacgtcggcggcgg 76
|||||||||||||||||||
Sbjct: 412 tcgtcgacgtcggcggcgg 430
>gb|BJ452098.1|BJ452098 BJ452098 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37l23 5', mRNA sequence
Length = 641
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 58 tcgtcgacgtcggcggcgg 76
|||||||||||||||||||
Sbjct: 19 tcgtcgacgtcggcggcgg 37
>gb|BJ470121.1|BJ470121 BJ470121 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15g04 5', mRNA sequence
Length = 511
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 58 tcgtcgacgtcggcggcgg 76
|||||||||||||||||||
Sbjct: 119 tcgtcgacgtcggcggcgg 137
>gb|BJ470332.1|BJ470332 BJ470332 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal16k24 5', mRNA sequence
Length = 517
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 58 tcgtcgacgtcggcggcgg 76
|||||||||||||||||||
Sbjct: 108 tcgtcgacgtcggcggcgg 126
>gb|BU980530.1|BU980530 HA20O23r HA Hordeum vulgare subsp. vulgare cDNA clone HA20O23
5-PRIME, mRNA sequence
Length = 638
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 58 tcgtcgacgtcggcggcgg 76
|||||||||||||||||||
Sbjct: 24 tcgtcgacgtcggcggcgg 42
>gb|CA033046.1|CA033046 HX14P07r HX Hordeum vulgare subsp. vulgare cDNA clone HX14P07
5-PRIME, mRNA sequence
Length = 445
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 58 tcgtcgacgtcggcggcgg 76
|||||||||||||||||||
Sbjct: 246 tcgtcgacgtcggcggcgg 264
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 92,441
Number of Sequences: 312970
Number of extensions: 92441
Number of successful extensions: 25630
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25585
Number of HSP's gapped (non-prelim): 44
length of query: 791
length of database: 175,134,539
effective HSP length: 19
effective length of query: 772
effective length of database: 169,188,109
effective search space: 130613220148
effective search space used: 130613220148
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)