BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440806.2.1
(1136 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU995294.1|BU995294 HM09M17r HM Hordeum vulgare subsp. v... 319 1e-085
gb|BU981349.1|BU981349 HA23F03r HA Hordeum vulgare subsp. v... 303 7e-081
gb|BM442096.2|BM442096 EBan01_SQ002_C23_R anther, yellow st... 170 6e-041
gb|CB881433.1|CB881433 HM09M17w HM Hordeum vulgare subsp. v... 153 2e-035
gb|BI959424.1|BI959424 HVSMEn0019J20f Hordeum vulgare rachi... 94 1e-017
gb|AV913079.1|AV913079 AV913079 K. Sato unpublished cDNA li... 94 1e-017
gb|AV917835.1|AV917835 AV917835 K. Sato unpublished cDNA li... 94 1e-017
gb|BQ757701.1|BQ757701 EBem10_SQ004_P08_R embryo, 2 Day ger... 94 1e-017
gb|BQ762096.1|BQ762096 EBpi01_SQ005_E23_R pistil, 1 DPA, no... 94 1e-017
gb|CA006301.1|CA006301 HU14J04u HU Hordeum vulgare subsp. v... 94 1e-017
gb|CA010539.1|CA010539 HT09K02u HT Hordeum vulgare subsp. v... 94 1e-017
gb|BJ548659.1|BJ548659 BJ548659 K. Sato unpublished cDNA li... 94 1e-017
gb|BJ550190.1|BJ550190 BJ550190 K. Sato unpublished cDNA li... 94 1e-017
gb|CB876160.1|CB876160 HX10H13w HX Hordeum vulgare subsp. v... 94 1e-017
gb|AF493562.1| Hordeum vulgare subsp. vulgare sucrose-phosp... 94 1e-017
gb|CA021847.1|CA021847 HZ41E24r HZ Hordeum vulgare subsp. v... 92 5e-017
gb|AV912414.1|AV912414 AV912414 K. Sato unpublished cDNA li... 88 7e-016
gb|BJ543915.1|BJ543915 BJ543915 K. Sato unpublished cDNA li... 88 7e-016
gb|BJ544081.1|BJ544081 BJ544081 K. Sato unpublished cDNA li... 88 7e-016
gb|BJ544133.1|BJ544133 BJ544133 K. Sato unpublished cDNA li... 88 7e-016
gb|BJ545422.1|BJ545422 BJ545422 K. Sato unpublished cDNA li... 88 7e-016
gb|BJ545597.1|BJ545597 BJ545597 K. Sato unpublished cDNA li... 88 7e-016
gb|BJ545649.1|BJ545649 BJ545649 K. Sato unpublished cDNA li... 88 7e-016
gb|AJ435145.1|AJ435145 AJ435145 S00002 Hordeum vulgare subs... 80 2e-013
gb|BI960587.1|BI960587 HVSMEn0025E05f Hordeum vulgare rachi... 56 3e-006
gb|AV915392.1|AV915392 AV915392 K. Sato unpublished cDNA li... 56 3e-006
gb|CA001634.1|CA001634 HS05C08r HS Hordeum vulgare subsp. v... 56 3e-006
gb|BI959076.1|BI959076 HVSMEn0018A17f Hordeum vulgare rachi... 54 1e-005
gb|BE454909.1|BE454909 HVSMEh0095H19f Hordeum vulgare 5-45 ... 48 6e-004
gb|BF616115.2|BF616115 HVSMEc0003A21f Hordeum vulgare seedl... 40 0.16
>gb|BU995294.1|BU995294 HM09M17r HM Hordeum vulgare subsp. vulgare cDNA clone HM09M17
5-PRIME, mRNA sequence
Length = 585
Score = 319 bits (161), Expect = 1e-085
Identities = 310/359 (86%), Gaps = 3/359 (0%)
Strand = Plus / Minus
Query: 474 cctgcgacttccacacccagttcttgtactcgctgtactgcgtgtactcccgcttggtca 533
||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct: 568 cctgcgacttccacacccagtccttgtactcgttgtagggcgtgtactcccgcttggtca 509
Query: 534 cctccttgaacctgctgtcgtcgacggcgcggaagcggttgccctggctgatgatggtgg 593
|||||||| || ||| ||| ||| ||| ||||| |||||||||||||||||||
Sbjct: 508 cctccttggcattggggtcatcgggcgcgatgaaccggtttccctggctgatgatggtgg 449
Query: 594 ggttccggctgccgccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgt 653
||| ||| ||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 448 ggtcgcggttgccgccgatggcgtacatcttccagtgcgtgtagtcgttgttcacgacgt 389
Query: 654 ggaagaagccgtgacggcagcgcggcatccgctgcaccagccccttgccgaagtggttga 713
||||||||||| |||||||||||||| |||||||| || |||||||||||||||||||
Sbjct: 388 ggaagaagccgaagcggcagcgcggcatgcgctgcacgaggcccttgccgaagtggttga 329
Query: 714 aggcgacggtgacctgcatctccctgtccttggacgc---ggcgtcgctggccccgaaca 770
|||||||||||||||||||| |||||||| | | ||||| |||||| ||||| |
Sbjct: 328 aggcgacggtgacctgcatcatcctgtcctgctgctcctgggcgttgctggcgccgaaga 269
Query: 771 gcataacgtggtcgtgcctcgtgaagtggccgttggagacggtgatggcggtggagccg 829
|||| ||||||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct: 268 gcatgacgtggtcgtggttggtgaagtggctgttggagacggtgatggcggtggagccg 210
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 907 ggagacgccgtcgccgtcgctc 928
||||||||||||||||||||||
Sbjct: 132 ggagacgccgtcgccgtcgctc 111
Score = 44.1 bits (22), Expect = 0.010
Identities = 65/78 (83%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 945 agtggtgctgcgagtcccggatcgcgccgccgccgtgcgccgcggcgtcgtggacgtgca 1004
||||||||| |||||||||||| ||||||| ||||| ||| | || |||||||||||
Sbjct: 94 agtggtgcttggagtcccggatcatgccgccggagtgcggcgccgagtggtggacgtgca 35
Query: 1005 ggttgtggaggatcacgt 1022
|||| ||| ||||||||
Sbjct: 34 cgttg-ggatgatcacgt 18
>gb|BU981349.1|BU981349 HA23F03r HA Hordeum vulgare subsp. vulgare cDNA clone HA23F03
5-PRIME, mRNA sequence
Length = 509
Score = 303 bits (153), Expect = 7e-081
Identities = 276/317 (87%)
Strand = Plus / Minus
Query: 411 cgtacttgcgctcgttctggccgccggactggttgaagaaggcgccgttgaggaacaggt 470
||||| ||||||||||||||||||||||||||||||||||||| ||||| | | | ||
Sbjct: 327 cgtacgtgcgctcgttctggccgccggactggttgaagaaggccccgttcatcatgacgt 268
Query: 471 cgtcctgcgacttccacacccagttcttgtactcgctgtactgcgtgtactcccgcttgg 530
| ||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||
Sbjct: 267 ccccctgcgacttccacacccagtccttgtactcgttgtagggcgtgtactcccgcttgg 208
Query: 531 tcacctccttgaacctgctgtcgtcgacggcgcggaagcggttgccctggctgatgatgg 590
||||||||||| || ||| ||| ||| ||| ||||| ||||||||||||||||
Sbjct: 207 tcacctccttggcattggggtcatcgggcgcgatgaaccggtttccctggctgatgatgg 148
Query: 591 tggggttccggctgccgccgatggcgtacatgagccagtgcgtgtagtcgttgttcacca 650
|||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 147 tggggtcgcggttgccgccgatggcgtacatcttccagtgcgtgtagtcgttgttcacga 88
Query: 651 cgtggaagaagccgtgacggcagcgcggcatccgctgcaccagccccttgccgaagtggt 710
|||||||||||||| |||||||||||||| |||||||| || ||||||||||||||||
Sbjct: 87 cgtggaagaagccgaagcggcagcgcggcatgcgctgcacgaggcccttgccgaagtggt 28
Query: 711 tgaaggcgacggtgacc 727
|||||||||||||||||
Sbjct: 27 tgaaggcgacggtgacc 11
>gb|BM442096.2|BM442096 EBan01_SQ002_C23_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_C23 5', mRNA sequence
Length = 356
Score = 170 bits (86), Expect = 6e-041
Identities = 146/166 (87%)
Strand = Plus / Minus
Query: 567 agcggttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatgagcc 626
||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 185 agcggttcccctggctgatgatggtcgggttcttgctgccgccgatggcgtacatgagcc 126
Query: 627 agtgcgtgtagtcgttgttcaccacgtggaagaagccgtgacggcagcgcggcatccgct 686
|||| ||||||||||||||||||||||||||||| || ||||| | ||||| | ||
Sbjct: 125 agtgggtgtagtcgttgttcaccacgtggaagaatccccatcggcaccttggcattctct 66
Query: 687 gcaccagccccttgccgaagtggttgaaggcgacggtgacctgcat 732
|||| || || | ||||||||||||||||||||||||||||||||
Sbjct: 65 gcacgaggcctctcccgaagtggttgaaggcgacggtgacctgcat 20
Score = 52.0 bits (26), Expect = 4e-005
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 445 gaagaaggcgccgttgaggaacaggtcgtcctgcgacttccacacccagttctt 498
||||| |||| |||| || | ||||||||||||||| | |||||||||||||||
Sbjct: 307 gaagacggcgtcgttcagcagcaggtcgtcctgcgagtgccacacccagttctt 254
>gb|CB881433.1|CB881433 HM09M17w HM Hordeum vulgare subsp. vulgare cDNA clone HM09M17
3-PRIME, mRNA sequence
Length = 490
Score = 153 bits (77), Expect = 2e-035
Identities = 173/205 (84%)
Strand = Plus / Plus
Query: 411 cgtacttgcgctcgttctggccgccggactggttgaagaaggcgccgttgaggaacaggt 470
||||| ||||||||||||||||||||||||||||||||||||| ||||| | | | ||
Sbjct: 286 cgtacgtgcgctcgttctggccgccggactggttgaagaaggccccgttcatcatgacgt 345
Query: 471 cgtcctgcgacttccacacccagttcttgtactcgctgtactgcgtgtactcccgcttgg 530
| ||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||
Sbjct: 346 ccccctgcgacttccacacccagtccttgtactcgttgtagggcgtgtactcccgcttgg 405
Query: 531 tcacctccttgaacctgctgtcgtcgacggcgcggaagcggttgccctggctgatgatgg 590
||||||||||| || ||| ||| ||| ||| ||||| ||||||||||||||||
Sbjct: 406 tcacctccttggcattggggtcatcgggcgcgatgaaccggtttccctggctgatgatgg 465
Query: 591 tggggttccggctgccgccgatggc 615
|||||| || |||||||||||||
Sbjct: 466 tggggtcggggttgccgccgatggc 490
>gb|BI959424.1|BI959424 HVSMEn0019J20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019J20f, mRNA sequence
Length = 675
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 53 agtctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaac 112
|||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |
Sbjct: 394 agtctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagc 335
Query: 113 gcatcaatgga 123
||||||||||
Sbjct: 334 tcatcaatgga 324
>gb|AV913079.1|AV913079 AV913079 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11l23 5', mRNA sequence
Length = 495
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 53 agtctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaac 112
|||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |
Sbjct: 439 agtctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagc 380
Query: 113 gcatcaatgga 123
||||||||||
Sbjct: 379 tcatcaatgga 369
>gb|AV917835.1|AV917835 AV917835 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11l23 3', mRNA sequence
Length = 608
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 53 agtctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaac 112
|||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |
Sbjct: 373 agtctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagc 432
Query: 113 gcatcaatgga 123
||||||||||
Sbjct: 433 tcatcaatgga 443
>gb|BQ757701.1|BQ757701 EBem10_SQ004_P08_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ004_P08 5', mRNA sequence
Length = 410
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 53 agtctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaac 112
|||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |
Sbjct: 368 agtctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagc 309
Query: 113 gcatcaatgga 123
||||||||||
Sbjct: 308 tcatcaatgga 298
>gb|BQ762096.1|BQ762096 EBpi01_SQ005_E23_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ005_E23 5', mRNA sequence
Length = 555
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 53 agtctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaac 112
|||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |
Sbjct: 146 agtctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagc 87
Query: 113 gcatcaatgga 123
||||||||||
Sbjct: 86 tcatcaatgga 76
>gb|CA006301.1|CA006301 HU14J04u HU Hordeum vulgare subsp. vulgare cDNA clone HU14J04
3-PRIME, mRNA sequence
Length = 583
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 53 agtctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaac 112
|||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |
Sbjct: 460 agtctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagc 519
Query: 113 gcatcaatgga 123
||||||||||
Sbjct: 520 tcatcaatgga 530
>gb|CA010539.1|CA010539 HT09K02u HT Hordeum vulgare subsp. vulgare cDNA clone HT09K02
3-PRIME, mRNA sequence
Length = 573
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 53 agtctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaac 112
|||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |
Sbjct: 429 agtctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagc 488
Query: 113 gcatcaatgga 123
||||||||||
Sbjct: 489 tcatcaatgga 499
>gb|BJ548659.1|BJ548659 BJ548659 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32f05 3', mRNA sequence
Length = 730
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 53 agtctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaac 112
|||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |
Sbjct: 378 agtctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagc 437
Query: 113 gcatcaatgga 123
||||||||||
Sbjct: 438 tcatcaatgga 448
>gb|BJ550190.1|BJ550190 BJ550190 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39c19 3', mRNA sequence
Length = 560
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 53 agtctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaac 112
|||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |
Sbjct: 402 agtctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagc 461
Query: 113 gcatcaatgga 123
||||||||||
Sbjct: 462 tcatcaatgga 472
>gb|CB876160.1|CB876160 HX10H13w HX Hordeum vulgare subsp. vulgare cDNA clone HX10H13
3-PRIME, mRNA sequence
Length = 696
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 53 agtctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaac 112
|||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |
Sbjct: 429 agtctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagc 488
Query: 113 gcatcaatgga 123
||||||||||
Sbjct: 489 tcatcaatgga 499
>gb|AF493562.1| Hordeum vulgare subsp. vulgare sucrose-phosphatase mRNA, complete cds
Length = 1583
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 53 agtctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaac 112
|||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |
Sbjct: 1128 agtctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagc 1069
Query: 113 gcatcaatgga 123
||||||||||
Sbjct: 1068 tcatcaatgga 1058
>gb|CA021847.1|CA021847 HZ41E24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ41E24
5-PRIME, mRNA sequence
Length = 509
Score = 91.7 bits (46), Expect = 5e-017
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 54 gtctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacg 113
||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |
Sbjct: 509 gtctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagct 450
Query: 114 catcaatgga 123
||||||||||
Sbjct: 449 catcaatgga 440
>gb|AV912414.1|AV912414 AV912414 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak3o02 3', mRNA sequence
Length = 360
Score = 87.7 bits (44), Expect = 7e-016
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 56 ctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgca 115
||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| | ||
Sbjct: 274 ctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagctca 333
Query: 116 tcaatgga 123
||||||||
Sbjct: 334 tcaatgga 341
>gb|BJ543915.1|BJ543915 BJ543915 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35a06 5', mRNA sequence
Length = 651
Score = 87.7 bits (44), Expect = 7e-016
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 56 ctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgca 115
||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| | ||
Sbjct: 485 ctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagctca 426
Query: 116 tcaatgga 123
||||||||
Sbjct: 425 tcaatgga 418
>gb|BJ544081.1|BJ544081 BJ544081 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19e06 5', mRNA sequence
Length = 628
Score = 87.7 bits (44), Expect = 7e-016
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 56 ctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgca 115
||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| | ||
Sbjct: 425 ctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagctca 366
Query: 116 tcaatgga 123
||||||||
Sbjct: 365 tcaatgga 358
>gb|BJ544133.1|BJ544133 BJ544133 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20c24 5', mRNA sequence
Length = 614
Score = 87.7 bits (44), Expect = 7e-016
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 56 ctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgca 115
||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| | ||
Sbjct: 412 ctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagctca 353
Query: 116 tcaatgga 123
||||||||
Sbjct: 352 tcaatgga 345
>gb|BJ545422.1|BJ545422 BJ545422 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35a06 3', mRNA sequence
Length = 732
Score = 87.7 bits (44), Expect = 7e-016
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 56 ctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgca 115
||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| | ||
Sbjct: 380 ctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagctca 439
Query: 116 tcaatgga 123
||||||||
Sbjct: 440 tcaatgga 447
>gb|BJ545597.1|BJ545597 BJ545597 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19e06 3', mRNA sequence
Length = 404
Score = 87.7 bits (44), Expect = 7e-016
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 56 ctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgca 115
||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| | ||
Sbjct: 79 ctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagctca 138
Query: 116 tcaatgga 123
||||||||
Sbjct: 139 tcaatgga 146
>gb|BJ545649.1|BJ545649 BJ545649 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20c24 3', mRNA sequence
Length = 669
Score = 87.7 bits (44), Expect = 7e-016
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 56 ctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaacgca 115
||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| | ||
Sbjct: 433 ctgtccacccatgatcggtactttttcccttgtttgtcaccataacatgaagccagctca 492
Query: 116 tcaatgga 123
||||||||
Sbjct: 493 tcaatgga 500
>gb|AJ435145.1|AJ435145 AJ435145 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200052E12F1, mRNA sequence
Length = 529
Score = 79.8 bits (40), Expect = 2e-013
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 53 agtctgtccacccatgctcggtactttctcccttgtt-tgtcaccataacatgatcccaa 111
|||||||||||||||| |||||||||| ||||||||| |||||||||||||||| |||
Sbjct: 121 agtctgtccacccatgatcggtactttttcccttgttntgtcaccataacatgaagccag 62
Query: 112 cgcatcaatgga 123
| ||||||||||
Sbjct: 61 ctcatcaatgga 50
>gb|BI960587.1|BI960587 HVSMEn0025E05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025E05f, mRNA sequence
Length = 663
Score = 56.0 bits (28), Expect = 3e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 567 agcggttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatgagcc 626
||||||| ||||||||| ||||||| || | ||| || |||||||||||||| ||
Sbjct: 364 agcggttcccctggctgttgatggtcggctcggcgcttcctccgatggcgtacatctccc 305
Query: 627 agtgcgtgtagtcgttgttcaccacgtggaag 658
|||| |||||||| ||||||||||| ||||||
Sbjct: 304 agtgagtgtagtcattgttcaccacatggaag 273
>gb|AV915392.1|AV915392 AV915392 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14d11 5', mRNA sequence
Length = 554
Score = 56.0 bits (28), Expect = 3e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 567 agcggttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatgagcc 626
||||||| ||||||||| ||||||| || | ||| || |||||||||||||| ||
Sbjct: 135 agcggttcccctggctgttgatggtcggctcggcgcttcctccgatggcgtacatctccc 76
Query: 627 agtgcgtgtagtcgttgttcaccacgtggaag 658
|||| |||||||| ||||||||||| ||||||
Sbjct: 75 agtgagtgtagtcattgttcaccacatggaag 44
>gb|CA001634.1|CA001634 HS05C08r HS Hordeum vulgare subsp. vulgare cDNA clone HS05C08
5-PRIME, mRNA sequence
Length = 521
Score = 56.0 bits (28), Expect = 3e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 567 agcggttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatgagcc 626
||||||| ||||||||| ||||||| || | ||| || |||||||||||||| ||
Sbjct: 121 agcggttcccctggctgttgatggtcggctcggcgcttcctccgatggcgtacatctccc 62
Query: 627 agtgcgtgtagtcgttgttcaccacgtggaag 658
|||| |||||||| ||||||||||| ||||||
Sbjct: 61 agtgagtgtagtcattgttcaccacatggaag 30
>gb|BI959076.1|BI959076 HVSMEn0018A17f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0018A17f,
mRNA sequence
Length = 632
Score = 54.0 bits (27), Expect = 1e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 1056 cgatgtgcacctgcgctccgcgcccgtcgatggtcttgtcgctgctcacgatgagctcct 1115
|||||||||| | || ||||| ||||||||||||||| |||| ||| |||||||||||
Sbjct: 318 cgatgtgcacgttggcgccgcggccgtcgatggtcttgaagctgttcatgatgagctcct 259
Query: 1116 ggc 1118
|||
Sbjct: 258 ggc 256
>gb|BE454909.1|BE454909 HVSMEh0095H19f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0095H19f, mRNA sequence
Length = 512
Score = 48.1 bits (24), Expect = 6e-004
Identities = 69/84 (82%)
Strand = Plus / Minus
Query: 52 aagtctgtccacccatgctcggtactttctcccttgtttgtcaccataacatgatcccaa 111
||||| ||||||||| ||||| ||||| ||||||||||||||||| ||||| | ||
Sbjct: 402 aagtcggtccacccacgctcgaaacttttggccttgtttgtcaccatagcatgaactcag 343
Query: 112 cgcatcaatggatgcatggagtga 135
||||||| ||| ||||| |||||
Sbjct: 342 tgcatcaacggacgcatgaagtga 319
>gb|BF616115.2|BF616115 HVSMEc0003A21f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0003A21f, mRNA sequence
Length = 573
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 968 gcgccgccgccgtgcgccgc 987
||||||||||||||||||||
Sbjct: 150 gcgccgccgccgtgcgccgc 131
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 196,098
Number of Sequences: 312970
Number of extensions: 196098
Number of successful extensions: 51518
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51465
Number of HSP's gapped (non-prelim): 52
length of query: 1136
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1117
effective length of database: 169,188,109
effective search space: 188983117753
effective search space used: 188983117753
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)