BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440773.2.1
(1437 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE216717.2|BE216717 HV_CEb0011F08f Hordeum vulgare seedl... 436 e-121
gb|BJ464822.1|BJ464822 BJ464822 K. Sato unpublished cDNA li... 422 e-116
gb|BI959212.1|BI959212 HVSMEn0018K16f Hordeum vulgare rachi... 391 e-107
gb|CV059125.1|CV059125 BNEL44f5 Barley EST endosperm librar... 339 2e-091
gb|BJ467124.1|BJ467124 BJ467124 K. Sato unpublished cDNA li... 246 2e-063
gb|AW983272.3|AW983272 HVSMEg0010A16f Hordeum vulgare pre-a... 157 1e-036
gb|BM097823.2|BM097823 EBem04_SQ002_M21_R embryo, 12 DPA, n... 115 4e-024
gb|BF616887.1|BF616887 HVSMEc0013G20f Hordeum vulgare seedl... 58 8e-007
gb|CA008597.1|CA008597 HU11H12r HU Hordeum vulgare subsp. v... 58 8e-007
gb|BU997874.1|BU997874 HI09E12r HI Hordeum vulgare subsp. v... 52 5e-005
gb|BF621573.2|BF621573 HVSMEa0011H12f Hordeum vulgare seedl... 46 0.003
gb|AJ461673.1|AJ461673 AJ461673 S00002 Hordeum vulgare subs... 46 0.003
gb|BQ467386.1|BQ467386 HS03J15r HS Hordeum vulgare subsp. v... 46 0.003
gb|BQ764311.1|BQ764311 EBan01_SQ005_B14_R anther, yellow st... 46 0.003
gb|AL508430.1|AL508430 AL508430 Hordeum vulgare Barke devel... 44 0.013
gb|BI778210.1|BI778210 EBro07_SQ002_I16_R root, 3 week, red... 44 0.013
gb|BJ464892.1|BJ464892 BJ464892 K. Sato unpublished cDNA li... 44 0.013
gb|BI777427.2|BI777427 EBro04_SQ001_D05_R root, 3 week, sal... 44 0.013
gb|BQ754568.1|BQ754568 EBed01_SQ003_C23_R endosperm, 6 DPA,... 44 0.013
gb|AL507156.1|AL507156 AL507156 Hordeum vulgare Barke devel... 42 0.050
gb|AL507848.1|AL507848 AL507848 Hordeum vulgare Barke devel... 42 0.050
gb|BF630534.2|BF630534 HVSMEb0011E23f Hordeum vulgare seedl... 42 0.050
gb|BE602532.2|BE602532 HVSMEh0099L08f Hordeum vulgare 5-45 ... 42 0.050
gb|BI957316.1|BI957316 HVSMEn0008N12f Hordeum vulgare rachi... 42 0.050
gb|BM444241.1|BM444241 EBem09_SQ004_J06_R embryo, 1 Day ger... 42 0.050
gb|BQ467279.1|BQ467279 HS03E02r HS Hordeum vulgare subsp. v... 42 0.050
gb|BQ469194.1|BQ469194 HM03K21r HM Hordeum vulgare subsp. v... 42 0.050
gb|BQ472118.1|BQ472118 HV04H10r HV Hordeum vulgare subsp. v... 42 0.050
gb|BM442101.2|BM442101 EBan01_SQ002_D05_R anther, yellow st... 42 0.050
gb|BM097800.2|BM097800 EBem04_SQ002_L19_R embryo, 12 DPA, n... 42 0.050
gb|BM376586.2|BM376586 EBem05_SQ002_K08_R embryo, 14 DPA, n... 42 0.050
gb|BM098440.2|BM098440 EBem08_SQ003_B03_R embryo, 40 DPA, n... 42 0.050
gb|BM098605.2|BM098605 EBem08_SQ003_I21_R embryo, 40 DPA, n... 42 0.050
gb|BM100006.2|BM100006 EBes01_SQ004_O06_R embryo sac, 4-6 D... 42 0.050
gb|BM374068.2|BM374068 EBma03_SQ003_I20_R maternal, 8 DPA, ... 42 0.050
gb|BM096660.2|BM096660 EBma07_SQ001_C11_R maternal, 21 DPA,... 42 0.050
gb|BI776454.2|BI776454 EBpi05_SQ001_G16_R pistil, 8 DPA, no... 42 0.050
gb|BI779360.2|BI779360 EBro01_SQ003_M14_R root, 3 week, hyd... 42 0.050
gb|BI779427.2|BI779427 EBro01_SQ003_P22_R root, 3 week, hyd... 42 0.050
gb|BI779514.2|BI779514 EBro01_SQ004_E13_R root, 3 week, hyd... 42 0.050
gb|BM370526.2|BM370526 EBro08_SQ004_H21_R root, 3 week, dro... 42 0.050
gb|BQ757115.1|BQ757115 EBem10_SQ002_O05_R embryo, 2 Day ger... 42 0.050
gb|BQ761368.1|BQ761368 EBro06_SQ001_H03_R root, 3 week, dro... 42 0.050
gb|BQ761719.1|BQ761719 EBem10_SQ001_L14_R embryo, 2 Day ger... 42 0.050
gb|BQ767407.1|BQ767407 EBro08_SQ008_G20_R root, 3 week, dro... 42 0.050
gb|BQ768423.1|BQ768423 EBro08_SQ011_M16_R root, 3 week, dro... 42 0.050
gb|BQ768795.1|BQ768795 EBro08_SQ012_O15_R root, 3 week, dro... 42 0.050
gb|BU980180.1|BU980180 HA18O16r HA Hordeum vulgare subsp. v... 42 0.050
gb|BU981029.1|BU981029 HA22G21r HA Hordeum vulgare subsp. v... 42 0.050
gb|BU981069.1|BU981069 HA22I21r HA Hordeum vulgare subsp. v... 42 0.050
gb|BU981114.1|BU981114 HA22K23r HA Hordeum vulgare subsp. v... 42 0.050
gb|BU981923.1|BU981923 HA25A06r HA Hordeum vulgare subsp. v... 42 0.050
gb|BU982612.1|BU982612 HA27B06r HA Hordeum vulgare subsp. v... 42 0.050
gb|BU984093.1|BU984093 HA31P12r HA Hordeum vulgare subsp. v... 42 0.050
gb|BU988201.1|BU988201 HF16P04r HF Hordeum vulgare subsp. v... 42 0.050
gb|BU989654.1|BU989654 HF22F10r HF Hordeum vulgare subsp. v... 42 0.050
gb|BU995381.1|BU995381 HM10B09r HM Hordeum vulgare subsp. v... 42 0.050
gb|BU998942.1|BU998942 HI12K14r HI Hordeum vulgare subsp. v... 42 0.050
gb|CA007121.1|CA007121 HU06N17r HU Hordeum vulgare subsp. v... 42 0.050
gb|CA009346.1|CA009346 HU13N22r HU Hordeum vulgare subsp. v... 42 0.050
gb|CA017489.1|CA017489 HV05F20r HV Hordeum vulgare subsp. v... 42 0.050
gb|CA027165.1|CA027165 HZ58B11r HZ Hordeum vulgare subsp. v... 42 0.050
gb|CA028352.1|CA028352 HZ61L16r HZ Hordeum vulgare subsp. v... 42 0.050
gb|CA031040.1|CA031040 HX08N13r HX Hordeum vulgare subsp. v... 42 0.050
gb|CA032442.1|CA032442 HX13A23r HX Hordeum vulgare subsp. v... 42 0.050
gb|CV059237.1|CV059237 BNEL45h6 Barley EST endosperm librar... 42 0.050
gb|CV059712.1|CV059712 BNEL50b2 Barley EST endosperm librar... 42 0.050
gb|CV061534.1|CV061534 BNEL6A6 Barley EST endosperm library... 42 0.050
gb|CV063432.1|CV063432 BNEL8C12 Barley EST endosperm librar... 42 0.050
gb|CV064118.1|CV064118 BNEL98c11 Barley EST endosperm libra... 42 0.050
gb|CV064131.1|CV064131 BNEL98d2 Barley EST endosperm librar... 42 0.050
gb|CK122760.1|CK122760 BES1824105k24 BES1824 Hordeum vulgar... 42 0.050
gb|CK123774.1|CK123774 BES1824105f05 BES1824 Hordeum vulgar... 42 0.050
gb|CK124810.1|CK124810 BES1824110h10 BES1824 Hordeum vulgar... 42 0.050
gb|AL450503.1|AL450503 AL450503 Hordeum vulgare Barke etiol... 40 0.20
gb|AL504290.1|AL504290 AL504290 Hordeum vulgare Barke roots... 40 0.20
gb|AL506570.1|AL506570 AL506570 Hordeum vulgare Barke devel... 40 0.20
gb|BF621498.1|BF621498 HVSMEa0011D06f Hordeum vulgare seedl... 40 0.20
gb|BF625831.1|BF625831 HVSMEa0013M02f Hordeum vulgare seedl... 40 0.20
gb|BF625330.2|BF625330 HVSMEa0008H15f Hordeum vulgare seedl... 40 0.20
gb|BG299765.1|BG299765 HVSMEa0021L13f Hordeum vulgare seedl... 40 0.20
gb|BF623835.3|BF623835 HVSMEa0007D13f Hordeum vulgare seedl... 40 0.20
gb|BF623129.3|BF623129 HVSMEa0014J20f Hordeum vulgare seedl... 40 0.20
gb|BF626808.2|BF626808 HVSMEb0001G07f Hordeum vulgare seedl... 40 0.20
gb|BF629950.2|BF629950 HVSMEb0007H03f Hordeum vulgare seedl... 40 0.20
gb|BF631575.2|BF631575 HVSMEb0016H13f Hordeum vulgare seedl... 40 0.20
gb|BF619587.2|BF619587 HVSMEc0004I07f Hordeum vulgare seedl... 40 0.20
gb|BF620481.2|BF620481 HVSMEc0020A13f Hordeum vulgare seedl... 40 0.20
gb|BE060927.2|BE060927 HVSMEg0013N21f Hordeum vulgare pre-a... 40 0.20
gb|BG343923.1|BG343923 HVSMEg0007C03f Hordeum vulgare pre-a... 40 0.20
gb|BE602106.2|BE602106 HVSMEh0102I06f Hordeum vulgare 5-45 ... 40 0.20
gb|BG365387.1|BG365387 HVSMEi0002I01f Hordeum vulgare 20 DA... 40 0.20
gb|BI946961.1|BI946961 HVSMEl0003A03f Hordeum vulgare spike... 40 0.20
gb|BI950638.1|BI950638 HVSMEl0021N18f Hordeum vulgare spike... 40 0.20
gb|BI954412.1|BI954412 HVSMEm0017M12f Hordeum vulgare green... 40 0.20
gb|BI956232.1|BI956232 HVSMEn0001F15f Hordeum vulgare rachi... 40 0.20
gb|BI956634.1|BI956634 HVSMEn0004H06f Hordeum vulgare rachi... 40 0.20
gb|BI956983.1|BI956983 HVSMEn0006K15f Hordeum vulgare rachi... 40 0.20
gb|BE215536.1|BE215536 HV_CEb0008B06f Hordeum vulgare seedl... 40 0.20
gb|BE216179.1|BE216179 HV_CEb0009L13f Hordeum vulgare seedl... 40 0.20
gb|BE558520.2|BE558520 HV_CEb0018D03f Hordeum vulgare seedl... 40 0.20
gb|BG414640.1|BG414640 HVSMEk0003D01f Hordeum vulgare testa... 40 0.20
gb|BE231214.2|BE231214 HVSMEg0017M12f Hordeum vulgare pre-a... 40 0.20
gb|BF620404.3|BF620404 HVSMEc0019M04f Hordeum vulgare seedl... 40 0.20
gb|BF255288.3|BF255288 HVSMEf0006H09f Hordeum vulgare seedl... 40 0.20
gb|AW982637.3|AW982637 HVSMEg0003M23f Hordeum vulgare pre-a... 40 0.20
gb|AW982910.3|AW982910 HVSMEg0004I15f Hordeum vulgare pre-a... 40 0.20
gb|BG343664.2|BG343664 HVSMEg0006C18f Hordeum vulgare pre-a... 40 0.20
gb|BG343892.2|BG343892 HVSMEg0007A18f Hordeum vulgare pre-a... 40 0.20
gb|BG344226.2|BG344226 HVSMEg0008D19f Hordeum vulgare pre-a... 40 0.20
gb|BE060542.3|BE060542 HVSMEg0012J10f Hordeum vulgare pre-a... 40 0.20
gb|BE454449.2|BE454449 HVSMEh0094I17f Hordeum vulgare 5-45 ... 40 0.20
gb|BG367117.2|BG367117 HVSMEi0010J09f Hordeum vulgare 20 DA... 40 0.20
gb|BG414629.2|BG414629 HVSMEk0003C11f Hordeum vulgare testa... 40 0.20
gb|BG416159.2|BG416159 HVSMEk0009P23f Hordeum vulgare testa... 40 0.20
gb|BF261360.3|BF261360 HV_CEa0001B07f Hordeum vulgare seedl... 40 0.20
gb|BF262797.3|BF262797 HV_CEa0004P16f Hordeum vulgare seedl... 40 0.20
gb|BF267258.3|BF267258 HV_CEa0017G10f Hordeum vulgare seedl... 40 0.20
gb|BE558378.3|BE558378 HV_CEb0017H03f Hordeum vulgare seedl... 40 0.20
gb|BM374939.1|BM374939 EBma05_SQ003_L05_R maternal, 12 DPA,... 40 0.20
gb|BM374955.1|BM374955 EBma05_SQ003_M13_R maternal, 12 DPA,... 40 0.20
gb|AV913421.1|AV913421 AV913421 K. Sato unpublished cDNA li... 40 0.20
gb|AV917142.1|AV917142 AV917142 K. Sato unpublished cDNA li... 40 0.20
gb|AV918400.1|AV918400 AV918400 K. Sato unpublished cDNA li... 40 0.20
gb|AV918721.1|AV918721 AV918721 K. Sato unpublished cDNA li... 40 0.20
gb|AV925376.1|AV925376 AV925376 K. Sato unpublished cDNA li... 40 0.20
gb|AJ436722.1|AJ436722 AJ436722 S00002 Hordeum vulgare subs... 40 0.20
gb|BJ462853.1|BJ462853 BJ462853 K. Sato unpublished cDNA li... 40 0.20
gb|BJ471556.1|BJ471556 BJ471556 K. Sato unpublished cDNA li... 40 0.20
gb|BJ474154.1|BJ474154 BJ474154 K. Sato unpublished cDNA li... 40 0.20
gb|BQ458542.1|BQ458542 HA04O18r HA Hordeum vulgare subsp. v... 40 0.20
gb|BQ458891.1|BQ458891 HA02P02r HA Hordeum vulgare subsp. v... 40 0.20
gb|BQ462889.1|BQ462889 HI02F08r HI Hordeum vulgare subsp. v... 40 0.20
gb|BQ463467.1|BQ463467 HI05F21r HI Hordeum vulgare subsp. v... 40 0.20
gb|BQ465147.1|BQ465147 HU02M15r HU Hordeum vulgare subsp. v... 40 0.20
gb|BI776249.2|BI776249 EBem04_SQ001_D03_R embryo, 12 DPA, n... 40 0.20
gb|BM377511.2|BM377511 EBem04_SQ003_F17_R embryo, 12 DPA, n... 40 0.20
gb|BM376680.2|BM376680 EBem05_SQ002_O15_R embryo, 14 DPA, n... 40 0.20
gb|BM375654.2|BM375654 EBem06_SQ004_A04_R embryo, 21 DPA, n... 40 0.20
gb|BM375809.2|BM375809 EBem06_SQ004_H16_R embryo, 21 DPA, n... 40 0.20
gb|BM375816.2|BM375816 EBem06_SQ004_H24_R embryo, 21 DPA, n... 40 0.20
gb|BM375941.2|BM375941 EBem06_SQ004_N15_R embryo, 21 DPA, n... 40 0.20
gb|BM098433.2|BM098433 EBem08_SQ003_A18_R embryo, 40 DPA, n... 40 0.20
gb|BM100344.2|BM100344 EBma01_SQ001_O18_R maternal, 4 DPA, ... 40 0.20
gb|BM374024.2|BM374024 EBma03_SQ003_G16_R maternal, 8 DPA, ... 40 0.20
gb|BM373157.2|BM373157 EBma04_SQ003_F06_R maternal, 10 DPA,... 40 0.20
gb|BM096803.2|BM096803 EBma07_SQ001_L08_R maternal, 21 DPA,... 40 0.20
gb|BM372709.2|BM372709 EBpi05_SQ003_L12_R pistil, 8 DPA, no... 40 0.20
gb|BI777504.2|BI777504 EBro04_SQ001_G21_R root, 3 week, sal... 40 0.20
gb|BM370891.2|BM370891 EBro04_SQ002_L06_R root, 3 week, sal... 40 0.20
gb|BI778000.2|BI778000 EBro07_SQ001_M07_R root, 3 week, red... 40 0.20
gb|BQ756855.1|BQ756855 EBem09_SQ003_P10_R embryo, 1 Day ger... 40 0.20
gb|BQ756982.1|BQ756982 EBem10_SQ002_G11_R embryo, 2 Day ger... 40 0.20
gb|BQ761610.1|BQ761610 EBem10_SQ001_D11_R embryo, 2 Day ger... 40 0.20
gb|BQ762368.1|BQ762368 EBro01_SQ005_J17_R root, 3 week, hyd... 40 0.20
gb|BQ762967.1|BQ762967 EBro02_SQ006_O18_R root, 3 week, hyd... 40 0.20
gb|BQ763464.1|BQ763464 EBro02_SQ008_O11_R root, 3 week, hyd... 40 0.20
gb|BQ763909.1|BQ763909 EBro03_SQ005_A23 _R root, 3 week, wa... 40 0.20
gb|BQ766135.1|BQ766135 EBro08_SQ005_K04_R root, 3 week, dro... 40 0.20
gb|BQ766150.1|BQ766150 EBro08_SQ005_N01_R root, 3 week, dro... 40 0.20
gb|BQ767667.1|BQ767667 EBro08_SQ009_D14_R root, 3 week, dro... 40 0.20
gb|BQ768043.1|BQ768043 EBro08_SQ010_E14_R root, 3 week, dro... 40 0.20
gb|BU970414.1|BU970414 HB14J06r BC Hordeum vulgare subsp. v... 40 0.20
gb|BU976963.1|BU976963 HA10J20r HA Hordeum vulgare subsp. v... 40 0.20
gb|BU978398.1|BU978398 HA13B22r HA Hordeum vulgare subsp. v... 40 0.20
gb|BU979730.1|BU979730 HA17B08r HA Hordeum vulgare subsp. v... 40 0.20
gb|BU981169.1|BU981169 HA22N09r HA Hordeum vulgare subsp. v... 40 0.20
gb|BU982133.1|BU982133 HA25J23r HA Hordeum vulgare subsp. v... 40 0.20
gb|BU983478.1|BU983478 HA29O01r HA Hordeum vulgare subsp. v... 40 0.20
gb|BU988081.1|BU988081 HF16J18r HF Hordeum vulgare subsp. v... 40 0.20
gb|BU989737.1|BU989737 HF22J01r HF Hordeum vulgare subsp. v... 40 0.20
gb|BU994065.1|BU994065 HM05J15r HM Hordeum vulgare subsp. v... 40 0.20
gb|BU994262.1|BU994262 HM06G16r HM Hordeum vulgare subsp. v... 40 0.20
gb|CA002296.1|CA002296 HS07B05r HS Hordeum vulgare subsp. v... 40 0.20
gb|CA002970.1|CA002970 HS09A15r HS Hordeum vulgare subsp. v... 40 0.20
gb|CA004263.1|CA004263 HS17B03r HS Hordeum vulgare subsp. v... 40 0.20
gb|CA007345.1|CA007345 HU07K09r HU Hordeum vulgare subsp. v... 40 0.20
gb|CA008801.1|CA008801 HU12C10r HU Hordeum vulgare subsp. v... 40 0.20
gb|CA014164.1|CA014164 HT10J01r HT Hordeum vulgare subsp. v... 40 0.20
gb|CA026258.1|CA026258 HZ55G05r HZ Hordeum vulgare subsp. v... 40 0.20
gb|CA026491.1|CA026491 HZ56B04r HZ Hordeum vulgare subsp. v... 40 0.20
gb|CA030051.1|CA030051 HX05P01r HX Hordeum vulgare subsp. v... 40 0.20
gb|CA030426.1|CA030426 HX07A14r HX Hordeum vulgare subsp. v... 40 0.20
gb|CA031698.1|CA031698 HX10O01r HX Hordeum vulgare subsp. v... 40 0.20
gb|CB874657.1|CB874657 HX05P01w HX Hordeum vulgare subsp. v... 40 0.20
gb|CB877073.1|CB877073 HP03H14T HP Hordeum vulgare subsp. v... 40 0.20
gb|CB878301.1|CB878301 HP08A15T HP Hordeum vulgare subsp. v... 40 0.20
gb|CB882222.1|CB882222 HL01E01w HL Hordeum vulgare subsp. v... 40 0.20
gb|CB882818.1|CB882818 HL02O21w HL Hordeum vulgare subsp. v... 40 0.20
gb|CV053564.1|CV053564 BNEL100f8 Barley EST endosperm libra... 40 0.20
gb|CV053678.1|CV053678 BNEL101h8 Barley EST endosperm libra... 40 0.20
gb|CV054259.1|CV054259 BNEL108e4 Barley EST endosperm libra... 40 0.20
gb|CV054408.1|CV054408 BNEL10B9 Barley EST endosperm librar... 40 0.20
gb|CV054576.1|CV054576 BNEL111a12 Barley EST endosperm libr... 40 0.20
gb|CV055291.1|CV055291 BNEL118h8 Barley EST endosperm libra... 40 0.20
gb|CV055775.1|CV055775 BNEL123d1 Barley EST endosperm libra... 40 0.20
gb|CV055788.1|CV055788 BNEL123e10 Barley EST endosperm libr... 40 0.20
gb|CV056755.1|CV056755 BNEL20c2 Barley EST endosperm librar... 40 0.20
gb|CV058699.1|CV058699 BNEL3H12 Barley EST endosperm librar... 40 0.20
gb|CV059223.1|CV059223 BNEL45g2 Barley EST endosperm librar... 40 0.20
gb|CV059230.1|CV059230 BNEL45h1 Barley EST endosperm librar... 40 0.20
gb|CV061169.1|CV061169 BNEL65g1 Barley EST endosperm librar... 40 0.20
gb|CV061248.1|CV061248 BNEL66f2 Barley EST endosperm librar... 40 0.20
gb|CV062841.1|CV062841 BNEL83f5 Barley EST endosperm librar... 40 0.20
gb|CV062968.1|CV062968 BNEL85b3 Barley EST endosperm librar... 40 0.20
gb|CV063748.1|CV063748 BNEL92g2 Barley EST endosperm librar... 40 0.20
gb|CV063868.1|CV063868 BNEL94a9 Barley EST endosperm librar... 40 0.20
gb|CV064203.1|CV064203 BNEL99c12 Barley EST endosperm libra... 40 0.20
gb|CK124560.1|CK124560 BES1824109i17 BES1824 Hordeum vulgar... 40 0.20
gb|DQ351213.1| Hordeum vulgare subsp. vulgare resistance pr... 40 0.20
>gb|BE216717.2|BE216717 HV_CEb0011F08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0011F08f, mRNA sequence
Length = 945
Score = 436 bits (220), Expect = e-121
Identities = 442/515 (85%), Gaps = 1/515 (0%)
Strand = Plus / Plus
Query: 129 gcgacggagaggtggaccgccgtgacgtgggcaagatgaagcacgggtgcgagcattacc 188
|||||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 110 gcgacggagacgtgtgccgccgcgacgtgggcaagatggagcacgggtgcgagcattacc 169
Query: 189 ggcggaggtgcaagatcgtggcaccgtgctgcaaccaggtgttcccctgccgccactgcc 248
||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||| ||||
Sbjct: 170 ggcggagatgcaagatcgtagcaccctgctgcaaggaggtgttcccctgccgccattgcc 229
Query: 249 acaacgaggctacggcttccggagataggcatacaatatgtcgtcaggatgttgaaaaag 308
||||||| || ||||||| || ||| |||||| |||||||| ||||||||||||||||
Sbjct: 230 acaacgacgccacggctttgggtgatcggcataatatatgtcgccaggatgttgaaaaag 289
Query: 309 tagtttgcctactctgtgaaacaaaacagccggtgtcacaagtgtgcataagctgtggag 368
|||| || |||||||||| || |||| |||||||||||||||||| |||| |||||||
Sbjct: 290 tagtgtgtgtactctgtgatactgaacaaccggtgtcacaagtgtgcgtaagatgtggag 349
Query: 369 tcaatatgggagagtacttttgtgatatatgcaaattttatgatgatgatacagacaaag 428
||||||||||||| ||||| |||||| ||||||| |||||||||||||| ||||| ||||
Sbjct: 350 tcaatatgggagaatacttctgtgatgtatgcaagttttatgatgatgacacagagaaag 409
Query: 429 ggcagtaccattgcatcgattgtggcatatgcagggttggtggcaaggaaaacttcttcc 488
|||||||||||||| ||||| ||||||||||||||||| ||||||||||| | ||| |
Sbjct: 410 ggcagtaccattgccatgattgcggcatatgcagggttggcggcaaggaaaaatacttgc 469
Query: 489 actgtgtgaagtgtgggtcctgctattctgttatactccgtgataaccatcagtgtgtgg 548
|||||| |||||||||| || || ||| | | |||||| |||||||||||| ||
Sbjct: 470 actgtgcanagtgtgggtcatgttacgctggtgcgttgcgtgat-accatcagtgtgggg 528
Query: 549 agaactcaatgaggcagaattgcccaatctgttatgagtatctatttgactcattacaag 608
|| | ||||||| |||||||| |||||||| ||||||||||||| || |||||| ||
Sbjct: 529 aggattcaatgaaacagaattggccaatctggtatgagtatctataagattcattaagag 588
Query: 609 gaacaagagttctgaactgtggacacacaatgcac 643
|||||||| |||| |||||||| | ||||||||||
Sbjct: 589 gaacaagatttcttaactgtgggcccacaatgcac 623
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 50 ccgccgtcgccgccgccgccggggatggggggagcgcaattccccgg 96
|||||| |||||||||||||||||||||| ||| |||| ||| ||||
Sbjct: 37 ccgccgccgccgccgccgccggggatgggaggaacgcacttcgccgg 83
>gb|BJ464822.1|BJ464822 BJ464822 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36c23 5', mRNA sequence
Length = 584
Score = 422 bits (213), Expect = e-116
Identities = 378/433 (87%)
Strand = Plus / Plus
Query: 129 gcgacggagaggtggaccgccgtgacgtgggcaagatgaagcacgggtgcgagcattacc 188
|||||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 149 gcgacggagacgtgtgccgccgcgacgtgggcaagatggagcacgggtgcgagcattacc 208
Query: 189 ggcggaggtgcaagatcgtggcaccgtgctgcaaccaggtgttcccctgccgccactgcc 248
||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||| ||||
Sbjct: 209 ggcggagatgcaagatcgtagcaccctgctgcaaggaggtgttcccctgccgccattgcc 268
Query: 249 acaacgaggctacggcttccggagataggcatacaatatgtcgtcaggatgttgaaaaag 308
||||||| || ||||||| || ||| |||||| |||||||| ||||||||||||||||
Sbjct: 269 acaacgacgccacggctttgggtgatcggcataatatatgtcgccaggatgttgaaaaag 328
Query: 309 tagtttgcctactctgtgaaacaaaacagccggtgtcacaagtgtgcataagctgtggag 368
|||| || |||||||||| || |||| |||||||||||||||||| |||| |||||||
Sbjct: 329 tagtgtgtgtactctgtgatactgaacaaccggtgtcacaagtgtgcgtaagatgtggag 388
Query: 369 tcaatatgggagagtacttttgtgatatatgcaaattttatgatgatgatacagacaaag 428
||||||||||||| ||||| |||||| ||||||| |||||||||||||| ||||| ||||
Sbjct: 389 tcaatatgggagaatacttctgtgatgtatgcaagttttatgatgatgacacagagaaag 448
Query: 429 ggcagtaccattgcatcgattgtggcatatgcagggttggtggcaaggaaaacttcttcc 488
|||||||||||||| ||||| ||||||||||||||||| ||||||||||| | |||||
Sbjct: 449 ggcagtaccattgccatgattgcggcatatgcagggttggcggcaaggaaaattacttcc 508
Query: 489 actgtgtgaagtgtgggtcctgctattctgttatactccgtgataaccatcagtgtgtgg 548
|||||| ||||||||||| || || ||||| | ||||||||||||||||||||||
Sbjct: 509 actgtgcaaagtgtgggtcatgttacgctgttgcgttgcgtgataaccatcagtgtgtgg 568
Query: 549 agaactcaatgag 561
|| | ||||||||
Sbjct: 569 aggattcaatgag 581
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 50 ccgccgtcgccgccgccgccggggatggggggagcgcaattccccgg 96
|||||| |||||||||||||||||||||| ||| |||| ||| ||||
Sbjct: 76 ccgccgccgccgccgccgccggggatgggaggaacgcacttcgccgg 122
>gb|BI959212.1|BI959212 HVSMEn0018K16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018K16f, mRNA sequence
Length = 679
Score = 391 bits (197), Expect = e-107
Identities = 367/423 (86%), Gaps = 1/423 (0%)
Strand = Plus / Plus
Query: 129 gcgacggagaggtggaccgccgtgacgtgggcaagatgaagcacgggtgcgagcattacc 188
|||||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 249 gcgacggagacgtgtgccgccgcgacgtgggcaagatggagcacgggtgcgagcattacc 308
Query: 189 ggcggaggtgcaagatcgtggcaccgtgctgcaaccaggtgttcccctgccgccactgcc 248
||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||| ||||
Sbjct: 309 ggcggagatgcaagatcgtagcaccctgctgcaaggaggtgttcccctgccgccattgcc 368
Query: 249 acaacgaggctacggcttccggagataggcatacaatatgtcgtcaggatgttgaaaaag 308
||||||| || ||||||| || ||| |||||| |||||||| ||||||||||||||||
Sbjct: 369 acaacgacgccacggctttgggtgatcggcataatatatgtcgccaggatgttgaaaaag 428
Query: 309 tagtttgcctactctgtgaaacaaaacagccggtgtcacaagtgtgcataagctgtggag 368
|||| || |||||||||| || |||| |||||||||||||||||| |||| |||||||
Sbjct: 429 tagtgtgtgtactctgtgatactgaacaaccggtgtcacaagtgtgcgtaagatgtggag 488
Query: 369 tcaatatgggagagtacttttgtgatatatgcaaattttatgatgatgatacagacaaag 428
||||||||||||| ||||| |||||| ||||||| |||||||||||||| ||||| ||||
Sbjct: 489 tcaatatgggagaatacttctgtgatgtatgcaagttttatgatgatgacacagagaaag 548
Query: 429 ggcagtaccattgcatcgattgtggcatatgcagggttggtggcaaggaaaacttcttcc 488
|||||||||||||| ||||| ||||||||||||||||| |||||||||| | || ||
Sbjct: 549 ggcagtaccattgccatgattgcggcatatgcagggttggcngcaaggaaaattactncc 608
Query: 489 actgtgtgaagtg-tgggtcctgctattctgttatactccgtgataaccatcagtgtgtg 547
|||||| ||||| |||||| || || ||||| | |||||||||||||||||||||
Sbjct: 609 actgtgcaaagtgntgggtcatgttacgctgttgcgttgcgtgataaccatcagtgtgtg 668
Query: 548 gag 550
|||
Sbjct: 669 gag 671
Score = 48.1 bits (24), Expect = 8e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 57 cgccgccgccgccggggatggggggagcgcaattccccgg 96
|||||||||||||||||||||| ||| |||| ||| ||||
Sbjct: 183 cgccgccgccgccggggatgggaggaacgcacttcgccgg 222
>gb|CV059125.1|CV059125 BNEL44f5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL44f5 5' similar to zinc finger,
mRNA sequence
Length = 562
Score = 339 bits (171), Expect = 2e-091
Identities = 327/379 (86%)
Strand = Plus / Plus
Query: 527 cgtgataaccatcagtgtgtggagaactcaatgaggcagaattgcccaatctgttatgag 586
|||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct: 183 cgtgataaccatcagtgtgtggaggattcaatgagacagaattgcccaatctgttatgag 242
Query: 587 tatctatttgactcattacaaggaacaagagttctgaactgtggacacacaatgcacttg 646
||||||||||| |||||| |||||||||||||||| |||||||||||||| |||||| ||
Sbjct: 243 tatctatttgattcattaaaaggaacaagagttcttaactgtggacacacgatgcacatg 302
Query: 647 acatgttttgaagaaatggtggcgcataacaaatacacttgtccaatatgctctaaaaca 706
||||| | || ||||||| ||||| |||||||||||||||||||| || || |||
Sbjct: 303 gactgtttcgctgagatggtggaccataataaatacacttgtccaatatgttccaagaca 362
Query: 707 gctcttgatttgacacatcattgggaaatgttggatcaagagatcgaagccacgatcatg 766
||||||||| ||||| ||| |||| ||||||||||||||||| ||||| || || |||
Sbjct: 363 gctcttgatatgacagttcactggggcatgttggatcaagagattgaagcaacaattatg 422
Query: 767 cctcttgtgtatcgctacaagatttgggtgctttgcaacgattgcaacaaggtctcagag 826
|||| ||| ||||| |||||| ||||||| |||||||| || |||||||| ||||||||
Sbjct: 423 cctcctgtatatcgttacaaggtttgggttctttgcaatgactgcaacaaagtctcagaa 482
Query: 827 gtgaactttcacgtgattggccacaagtgcagccactgcagatcgtacaacacccgaaca 886
||| |||| |||||||||||||| ||||||||||| |||| || |||||||| ||| |
Sbjct: 483 gtggacttccacgtgattggccataagtgcagccattgcaactcatacaacactcgatcg 542
Query: 887 acatcgcgccctgcagatt 905
|| ||||| ||||||||||
Sbjct: 543 acgtcgcggcctgcagatt 561
>gb|BJ467124.1|BJ467124 BJ467124 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36c23 3', mRNA sequence
Length = 672
Score = 246 bits (124), Expect = 2e-063
Identities = 275/326 (84%)
Strand = Plus / Minus
Query: 593 tttgactcattacaaggaacaagagttctgaactgtggacacacaatgcacttgacatgt 652
||||| |||||| |||||||||||||| | |||||||||||||| |||||| || |||
Sbjct: 672 tttgattcattaaaaggaacaagagttnttaactgtggacacacnatgcacatggactgt 613
Query: 653 tttgaagaaatggtggcgcataacaaatacacttgtccaatatgctctaaaacagctctt 712
|| | || ||||||| ||||| |||||||||||||||||||| || || |||||||||
Sbjct: 612 ttcgctgagatggtggaccataataaatacacttgtccaatatgttccaagacagctctt 553
Query: 713 gatttgacacatcattgggaaatgttggatcaagagatcgaagccacgatcatgcctctt 772
||| ||||| ||| |||| ||||||||||||||||| ||||| || || ||||||| |
Sbjct: 552 gatatgacagttcactggggcatgttggatcaagagattgaagcaacaattatgcctcct 493
Query: 773 gtgtatcgctacaagatttgggtgctttgcaacgattgcaacaaggtctcagaggtgaac 832
|| ||||| |||||| ||||||| |||||||| || |||||||| |||||||| ||| ||
Sbjct: 492 gtatatcgttacaaggtttgggttctttgcaatgactgcaacaaagtctcagaagtggac 433
Query: 833 tttcacgtgattggccacaagtgcagccactgcagatcgtacaacacccgaacaacatcg 892
|| |||||||||||||| ||||||||||| |||| || |||||||| ||| | || |||
Sbjct: 432 ttccacgtgattggccataagtgcagccattgcaactcatacaacactcgatcgacgtcg 373
Query: 893 cgccctgcagatttatccggaagcag 918
|| |||||||||||||| ||||||||
Sbjct: 372 cggcctgcagatttatcaggaagcag 347
>gb|AW983272.3|AW983272 HVSMEg0010A16f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0010A16f, mRNA sequence
Length = 583
Score = 157 bits (79), Expect = 1e-036
Identities = 157/183 (85%)
Strand = Plus / Plus
Query: 736 gttggatcaagagatcgaagccacgatcatgcctcttgtgtatcgctacaagatttgggt 795
||||||||||||||| ||||| || || ||||||| ||| ||||| |||||| |||||||
Sbjct: 1 gttggatcaagagattgaagcaacaattatgcctcctgtatatcgttacaaggtttgggt 60
Query: 796 gctttgcaacgattgcaacaaggtctcagaggtgaactttcacgtgattggccacaagtg 855
|||||||| || |||||||| |||||||| ||| |||| |||||||||||||| |||||
Sbjct: 61 tctttgcaatgactgcaacaaagtctcagaagtggacttccacgtgattggccataagtg 120
Query: 856 cagccactgcagatcgtacaacacccgaacaacatcgcgccctgcagatttatccggaag 915
|||||| |||| || |||||||| ||| | || ||||| |||||||||||||| |||||
Sbjct: 121 cagccattgcaactcatacaacactcgatcgacgtcgcggcctgcagatttatcaggaag 180
Query: 916 cag 918
|||
Sbjct: 181 cag 183
>gb|BM097823.2|BM097823 EBem04_SQ002_M21_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ002_M21 5', mRNA sequence
Length = 500
Score = 115 bits (58), Expect = 4e-024
Identities = 112/130 (86%)
Strand = Plus / Plus
Query: 789 tttgggtgctttgcaacgattgcaacaaggtctcagaggtgaactttcacgtgattggcc 848
||||||| |||||||| || |||||||| |||||||| ||| |||| |||||||||||||
Sbjct: 89 tttgggttctttgcaatgactgcaacaaagtctcagaagtggacttccacgtgattggcc 148
Query: 849 acaagtgcagccactgcagatcgtacaacacccgaacaacatcgcgccctgcagatttat 908
| ||||||||||| |||| || |||||||| ||| | || ||||| |||||||||||||
Sbjct: 149 ataagtgcagccattgcaactcatacaacactcgatcgacgtcgcggcctgcagatttat 208
Query: 909 ccggaagcag 918
| ||||||||
Sbjct: 209 caggaagcag 218
>gb|BF616887.1|BF616887 HVSMEc0013G20f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0013G20f, mRNA sequence
Length = 584
Score = 58.0 bits (29), Expect = 8e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 452 ggcatatgcagggttggtggcaaggaaaacttcttccactg 492
||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 538 ggcatctgcagggttggaggcaaggacaacttcttccactg 578
Score = 48.1 bits (24), Expect = 8e-004
Identities = 69/84 (82%)
Strand = Plus / Plus
Query: 172 cgggtgcgagcattaccggcggaggtgcaagatcgtggcaccgtgctgcaaccaggtgtt 231
||||||| |||| ||| || || |||||| |||| ||| || ||||||||| | || ||
Sbjct: 147 cgggtgcaagcactacaggaggcggtgcaggatccgggcgccatgctgcaacgacgtctt 206
Query: 232 cccctgccgccactgccacaacga 255
|| ||||||||| |||||||||||
Sbjct: 207 ccactgccgccattgccacaacga 230
>gb|CA008597.1|CA008597 HU11H12r HU Hordeum vulgare subsp. vulgare cDNA clone HU11H12
5-PRIME, mRNA sequence
Length = 614
Score = 58.0 bits (29), Expect = 8e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 452 ggcatatgcagggttggtggcaaggaaaacttcttccactg 492
||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 444 ggcatctgcagggttggaggcaaggacaacttcttccactg 484
Score = 48.1 bits (24), Expect = 8e-004
Identities = 69/84 (82%)
Strand = Plus / Plus
Query: 172 cgggtgcgagcattaccggcggaggtgcaagatcgtggcaccgtgctgcaaccaggtgtt 231
||||||| |||| ||| || || |||||| |||| ||| || ||||||||| | || ||
Sbjct: 170 cgggtgcaagcactacaggaggcggtgcaggatccgggcgccatgctgcaacgacgtctt 229
Query: 232 cccctgccgccactgccacaacga 255
|| ||||||||| |||||||||||
Sbjct: 230 ccactgccgccattgccacaacga 253
>gb|BU997874.1|BU997874 HI09E12r HI Hordeum vulgare subsp. vulgare cDNA clone HI09E12
5-PRIME, mRNA sequence
Length = 620
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 41 ccctcctctccgccgtcgccgccgccgccg 70
|||||||| |||||||||||||||||||||
Sbjct: 64 ccctcctccccgccgtcgccgccgccgccg 93
>gb|BF621573.2|BF621573 HVSMEa0011H12f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011H12f, mRNA sequence
Length = 675
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 ctccgccgtcgccgccgccgccg 70
|||||||||||||||||||||||
Sbjct: 132 ctccgccgtcgccgccgccgccg 110
>gb|AJ461673.1|AJ461673 AJ461673 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200027C04F2, mRNA sequence
Length = 180
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 872 tacaacacccgaacaacatcgcgccctgcagatttatccggaagcag 918
|||||||| ||| | || ||||| |||||||||||||| ||||||||
Sbjct: 13 tacaacactcgatcgacgtcgcggcctgcagatttatcaggaagcag 59
>gb|BQ467386.1|BQ467386 HS03J15r HS Hordeum vulgare subsp. vulgare cDNA clone HS03J15
5-PRIME, mRNA sequence
Length = 566
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 ctccgccgtcgccgccgccgccg 70
|||||||||||||||||||||||
Sbjct: 70 ctccgccgtcgccgccgccgccg 92
>gb|BQ764311.1|BQ764311 EBan01_SQ005_B14_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_B14 5', mRNA sequence
Length = 431
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 ctccgccgtcgccgccgccgccg 70
|||||||||||||||||||||||
Sbjct: 77 ctccgccgtcgccgccgccgccg 55
>gb|AL508430.1|AL508430 AL508430 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08L19V 5',
mRNA sequence
Length = 401
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 ctccgccgtcgccgccgccgcc 69
||||||||||||||||||||||
Sbjct: 146 ctccgccgtcgccgccgccgcc 167
>gb|BI778210.1|BI778210 EBro07_SQ002_I16_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ002_I16 5', mRNA sequence
Length = 381
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 cctctccgccgtcgccgccgccgccg 70
||||||||||| ||||||||||||||
Sbjct: 40 cctctccgccgccgccgccgccgccg 65
>gb|BJ464892.1|BJ464892 BJ464892 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36h14 5', mRNA sequence
Length = 669
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 cctctccgccgtcgccgccgccgccg 70
||||||||||| ||||||||||||||
Sbjct: 13 cctctccgccgccgccgccgccgccg 38
>gb|BI777427.2|BI777427 EBro04_SQ001_D05_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_D05 5', mRNA sequence
Length = 370
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 49 tccgccgtcgccgccgccgccg 70
||||||||||||||||||||||
Sbjct: 69 tccgccgtcgccgccgccgccg 48
>gb|BQ754568.1|BQ754568 EBed01_SQ003_C23_R endosperm, 6 DPA, no treatment, cv Optic,
EBed01 Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ003_C23 5', mRNA sequence
Length = 372
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 cctctccgccgtcgccgccgccgccg 70
||||||||||| ||||||||||||||
Sbjct: 31 cctctccgccgccgccgccgccgccg 56
>gb|AL507156.1|AL507156 AL507156 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05M14T 5',
mRNA sequence
Length = 668
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 21 cctcctcgccgccgccgccgccgccgccg 49
>gb|AL507848.1|AL507848 AL507848 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07A12V 5',
mRNA sequence
Length = 659
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 27 cctcctcgccgccgccgccgccgccgccg 55
>gb|BF630534.2|BF630534 HVSMEb0011E23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0011E23f, mRNA sequence
Length = 747
Score = 42.1 bits (21), Expect = 0.050
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 ccgccgtcgccgccgccgccg 70
|||||||||||||||||||||
Sbjct: 71 ccgccgtcgccgccgccgccg 91
>gb|BE602532.2|BE602532 HVSMEh0099L08f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099L08f, mRNA sequence
Length = 737
Score = 42.1 bits (21), Expect = 0.050
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 ccgccgtcgccgccgccgccg 70
|||||||||||||||||||||
Sbjct: 53 ccgccgtcgccgccgccgccg 73
>gb|BI957316.1|BI957316 HVSMEn0008N12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0008N12f, mRNA sequence
Length = 593
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 47 tctccgccgtcgccgccgccgccgg 71
||||||||| |||||||||||||||
Sbjct: 34 tctccgccgccgccgccgccgccgg 58
>gb|BM444241.1|BM444241 EBem09_SQ004_J06_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_J06 5', mRNA sequence
Length = 471
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 15 cctcctcgccgccgccgccgccgccgccg 43
>gb|BQ467279.1|BQ467279 HS03E02r HS Hordeum vulgare subsp. vulgare cDNA clone HS03E02
5-PRIME, mRNA sequence
Length = 487
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 25 cctcctcgccgccgccgccgccgccgccg 53
>gb|BQ469194.1|BQ469194 HM03K21r HM Hordeum vulgare subsp. vulgare cDNA clone HM03K21
5-PRIME, mRNA sequence
Length = 551
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 51 cgccgtcgccgccgccgccggggatgggg 79
||||| |||||||||||||||||| ||||
Sbjct: 71 cgccgccgccgccgccgccggggaggggg 43
>gb|BQ472118.1|BQ472118 HV04H10r HV Hordeum vulgare subsp. vulgare cDNA clone HV04H10
5-PRIME, mRNA sequence
Length = 492
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 36 cctcctcgccgccgccgccgccgccgccg 64
>gb|BM442101.2|BM442101 EBan01_SQ002_D05_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_D05 5', mRNA sequence
Length = 686
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 14 cctcctcgccgccgccgccgccgccgccg 42
>gb|BM097800.2|BM097800 EBem04_SQ002_L19_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ002_L19 5', mRNA sequence
Length = 468
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 7 cctcctcgccgccgccgccgccgccgccg 35
>gb|BM376586.2|BM376586 EBem05_SQ002_K08_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_K08 5', mRNA sequence
Length = 571
Score = 42.1 bits (21), Expect = 0.050
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 ccgccgtcgccgccgccgccg 70
|||||||||||||||||||||
Sbjct: 15 ccgccgtcgccgccgccgccg 35
>gb|BM098440.2|BM098440 EBem08_SQ003_B03_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_B03 5', mRNA sequence
Length = 456
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 3 cctcctcgccgccgccgccgccgccgccg 31
>gb|BM098605.2|BM098605 EBem08_SQ003_I21_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_I21 5', mRNA sequence
Length = 477
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 11 cctcctcgccgccgccgccgccgccgccg 39
>gb|BM100006.2|BM100006 EBes01_SQ004_O06_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ004_O06 5', mRNA sequence
Length = 445
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 16 cctcctcgccgccgccgccgccgccgccg 44
>gb|BM374068.2|BM374068 EBma03_SQ003_I20_R maternal, 8 DPA, no treatment, cv Optic,
EBma03 Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_I20 5', mRNA sequence
Length = 624
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 25 cctcctcgccgccgccgccgccgccgccg 53
>gb|BM096660.2|BM096660 EBma07_SQ001_C11_R maternal, 21 DPA, no treatment, cv Optic,
EBma07 Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ001_C11 5', mRNA sequence
Length = 254
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 3 cctcctcgccgccgccgccgccgccgccg 31
>gb|BI776454.2|BI776454 EBpi05_SQ001_G16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ001_G16 5', mRNA sequence
Length = 347
Score = 42.1 bits (21), Expect = 0.050
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 ccgccgtcgccgccgccgccg 70
|||||||||||||||||||||
Sbjct: 26 ccgccgtcgccgccgccgccg 46
>gb|BI779360.2|BI779360 EBro01_SQ003_M14_R root, 3 week, hydroponic grown, no treatment,
cv Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA
clone EBro01_SQ003_M14 5', mRNA sequence
Length = 470
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 3 cctcctcgccgccgccgccgccgccgccg 31
>gb|BI779427.2|BI779427 EBro01_SQ003_P22_R root, 3 week, hydroponic grown, no treatment,
cv Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA
clone EBro01_SQ003_P22 5', mRNA sequence
Length = 142
Score = 42.1 bits (21), Expect = 0.050
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 ccgccgtcgccgccgccgccg 70
|||||||||||||||||||||
Sbjct: 10 ccgccgtcgccgccgccgccg 30
>gb|BI779514.2|BI779514 EBro01_SQ004_E13_R root, 3 week, hydroponic grown, no treatment,
cv Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA
clone EBro01_SQ004_E13 5', mRNA sequence
Length = 644
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 28 cctcctcgccgccgccgccgccgccgccg 56
>gb|BM370526.2|BM370526 EBro08_SQ004_H21_R root, 3 week, drought-stressed, cv Optic,
EBro08 Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_H21 5', mRNA sequence
Length = 671
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 20 cctcctcgccgccgccgccgccgccgccg 48
>gb|BQ757115.1|BQ757115 EBem10_SQ002_O05_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ002_O05 5', mRNA sequence
Length = 267
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 16 cctcctcgccgccgccgccgccgccgccg 44
>gb|BQ761368.1|BQ761368 EBro06_SQ001_H03_R root, 3 week, drought-stressed, cv Optic,
EBro06 Hordeum vulgare subsp. vulgare cDNA clone
EBro06_SQ001_H03 5', mRNA sequence
Length = 419
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 13 cctcctcgccgccgccgccgccgccgccg 41
>gb|BQ761719.1|BQ761719 EBem10_SQ001_L14_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_L14 5', mRNA sequence
Length = 284
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 11 cctcctcgccgccgccgccgccgccgccg 39
>gb|BQ767407.1|BQ767407 EBro08_SQ008_G20_R root, 3 week, drought-stressed, cv Optic,
EBro08 Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ008_G20 5', mRNA sequence
Length = 641
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 22 cctcctcgccgccgccgccgccgccgccg 50
>gb|BQ768423.1|BQ768423 EBro08_SQ011_M16_R root, 3 week, drought-stressed, cv Optic,
EBro08 Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_M16 5', mRNA sequence
Length = 646
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 16 cctcctcgccgccgccgccgccgccgccg 44
>gb|BQ768795.1|BQ768795 EBro08_SQ012_O15_R root, 3 week, drought-stressed, cv Optic,
EBro08 Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_O15 5', mRNA sequence
Length = 716
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 6 cctcctcgccgccgccgccgccgccgccg 34
>gb|BU980180.1|BU980180 HA18O16r HA Hordeum vulgare subsp. vulgare cDNA clone HA18O16
5-PRIME, mRNA sequence
Length = 583
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 38 cctcctcgccgccgccgccgccgccgccg 66
>gb|BU981029.1|BU981029 HA22G21r HA Hordeum vulgare subsp. vulgare cDNA clone HA22G21
5-PRIME, mRNA sequence
Length = 518
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 32 cctcctcgccgccgccgccgccgccgccg 60
>gb|BU981069.1|BU981069 HA22I21r HA Hordeum vulgare subsp. vulgare cDNA clone HA22I21
5-PRIME, mRNA sequence
Length = 656
Score = 42.1 bits (21), Expect = 0.050
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 cctcctctccgccgtcgccgccgccgccg 70
||||||| |||||| ||||||||||||||
Sbjct: 32 cctcctcgccgccgccgccgccgccgccg 60
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 196,684
Number of Sequences: 312970
Number of extensions: 196684
Number of successful extensions: 78345
Number of sequences better than 0.5: 212
Number of HSP's better than 0.5 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77390
Number of HSP's gapped (non-prelim): 570
length of query: 1437
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1418
effective length of database: 169,188,109
effective search space: 239908738562
effective search space used: 239908738562
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)