BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2440716.2.1
         (774 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BF620291.2|BF620291  HVSMEc0019F18f Hordeum vulgare seedl...    60   1e-007
gb|BF257303.2|BF257303  HVSMEf0012H19f Hordeum vulgare seedl...    60   1e-007
gb|AJ462135.1|AJ462135  AJ462135 S00002 Hordeum vulgare subs...    60   1e-007
gb|CA018416.1|CA018416  HV08I24r HV Hordeum vulgare subsp. v...    50   1e-004
gb|BF622731.2|BF622731  HVSMEa0008E02f Hordeum vulgare seedl...    48   4e-004
gb|CA016523.1|CA016523  HV08I24u HV Hordeum vulgare subsp. v...    44   0.007
gb|BF065670.2|BF065670  HV_CEb0013E24f Hordeum vulgare seedl...    42   0.027
gb|AL509758.1|AL509758  AL509758 Hordeum vulgare Barke devel...    38   0.42 
gb|BF628779.2|BF628779  HVSMEb0008B22f Hordeum vulgare seedl...    38   0.42 
gb|BF628789.2|BF628789  HVSMEb0008D18f Hordeum vulgare seedl...    38   0.42 
>gb|BF620291.2|BF620291 HVSMEc0019F18f Hordeum vulgare seedling shoot EST library
           HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
           subsp. vulgare cDNA clone HVSMEc0019F18f, mRNA sequence
          Length = 689

 Score = 60.0 bits (30), Expect = 1e-007
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 631 acggccgggtgcgcgagcacctcctcctgcggcgccca 668
           |||||||||||||  |||||||||||||||||||||||
Sbjct: 633 acggccgggtgcggaagcacctcctcctgcggcgccca 596
>gb|BF257303.2|BF257303 HVSMEf0012H19f Hordeum vulgare seedling root EST library HVcDNA0007
           (Etiolated and unstressed) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEf0012H19f, mRNA sequence
          Length = 847

 Score = 60.0 bits (30), Expect = 1e-007
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 631 acggccgggtgcgcgagcacctcctcctgcggcgccca 668
           ||||||||||||  ||||||||||||||||||||||||
Sbjct: 433 acggccgggtgccggagcacctcctcctgcggcgccca 396
>gb|AJ462135.1|AJ462135 AJ462135 S00002 Hordeum vulgare subsp. vulgare cDNA clone
           S0000200058E12F1, mRNA sequence
          Length = 360

 Score = 60.0 bits (30), Expect = 1e-007
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 631 acggccgggtgcgcgagcacctcctcctgcggcgccca 668
           ||||||||||||  ||||||||||||||||||||||||
Sbjct: 66  acggccgggtgccggagcacctcctcctgcggcgccca 29
>gb|CA018416.1|CA018416 HV08I24r HV Hordeum vulgare subsp. vulgare cDNA clone HV08I24
           5-PRIME, mRNA sequence
          Length = 647

 Score = 50.1 bits (25), Expect = 1e-004
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                       
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcctcc 657
           |||||||||||| |||| ||||||||  |||||||||| |||||    |||||||||| |
Sbjct: 196 gagttccaaccgctgtgcgtgaggaaggcgccgacggcggggtggtttagcacctcctgc 137

                
Query: 658 tgcgg 662
           |||||
Sbjct: 136 tgcgg 132
>gb|BF622731.2|BF622731 HVSMEa0008E02f Hordeum vulgare seedling shoot EST library
           HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
           cDNA clone HVSMEa0008E02f, mRNA sequence
          Length = 718

 Score = 48.1 bits (24), Expect = 4e-004
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtg 641
           |||||||||||| |||| ||||||||  |||||||||| |||||
Sbjct: 546 gagttccaaccgctgtgcgtgaggaaggcgccgacggcggggtg 503
>gb|CA016523.1|CA016523 HV08I24u HV Hordeum vulgare subsp. vulgare cDNA clone HV08I24
           3-PRIME, mRNA sequence
          Length = 487

 Score = 44.1 bits (22), Expect = 0.007
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggc 635
           |||||||||||| |||| ||||||||  ||||||||||
Sbjct: 450 gagttccaaccgctgtgcgtgaggaaggcgccgacggc 487
>gb|BF065670.2|BF065670 HV_CEb0013E24f Hordeum vulgare seedling green leaf EST library
           HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
           vulgare cDNA clone HV_CEb0013E24f, mRNA sequence
          Length = 573

 Score = 42.1 bits (21), Expect = 0.027
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcctcc 657
           |||||||||||| |||| ||||||||  | |||||||| |||||    |||||||||| |
Sbjct: 85  gagttccaaccgctgtgcgtgaggaaggccccgacggcggggtggtttagcacctcctgc 26

                
Query: 658 tgcgg 662
           |||||
Sbjct: 25  tgcgg 21
>gb|AL509758.1|AL509758 AL509758 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
           Hordeum vulgare subsp. vulgare cDNA clone HY02M14u 3',
           mRNA sequence
          Length = 589

 Score = 38.2 bits (19), Expect = 0.42
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 402 ctccttgatctcctcccct 420
           |||||||||||||||||||
Sbjct: 465 ctccttgatctcctcccct 483
>gb|BF628779.2|BF628779 HVSMEb0008B22f Hordeum vulgare seedling shoot EST library
           HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEb0008B22f, mRNA sequence
          Length = 741

 Score = 38.2 bits (19), Expect = 0.42
 Identities = 55/67 (82%)
 Strand = Plus / Minus

                                                                       
Query: 594 ggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctc 653
           |||||||||||| |||  ||| ||||||||  ||||||  |||||||||   |||||| |
Sbjct: 488 ggtggagttccagccgcagtgtgtgaggaagacgccgagcgccgggtgctgcagcaccgc 429

                  
Query: 654 ctcctgc 660
           |||||||
Sbjct: 428 ctcctgc 422
>gb|BF628789.2|BF628789 HVSMEb0008D18f Hordeum vulgare seedling shoot EST library
           HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEb0008D18f, mRNA sequence
          Length = 769

 Score = 38.2 bits (19), Expect = 0.42
 Identities = 55/67 (82%)
 Strand = Plus / Minus

                                                                       
Query: 594 ggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctc 653
           |||||||||||| |||  ||| ||||||||  ||||||  |||||||||   |||||| |
Sbjct: 488 ggtggagttccagccgcagtgtgtgaggaagacgccgagcgccgggtgctgcagcaccgc 429

                  
Query: 654 ctcctgc 660
           |||||||
Sbjct: 428 ctcctgc 422
  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 101,605
Number of Sequences: 312970
Number of extensions: 101605
Number of successful extensions: 31757
Number of sequences better than  0.5: 10
Number of HSP's better than  0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31743
Number of HSP's gapped (non-prelim): 14
length of query: 774
length of database: 175,134,539
effective HSP length: 19
effective length of query: 755
effective length of database: 169,188,109
effective search space: 127737022295
effective search space used: 127737022295
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)