BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440716.2.1
(774 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF620291.2|BF620291 HVSMEc0019F18f Hordeum vulgare seedl... 60 1e-007
gb|BF257303.2|BF257303 HVSMEf0012H19f Hordeum vulgare seedl... 60 1e-007
gb|AJ462135.1|AJ462135 AJ462135 S00002 Hordeum vulgare subs... 60 1e-007
gb|CA018416.1|CA018416 HV08I24r HV Hordeum vulgare subsp. v... 50 1e-004
gb|BF622731.2|BF622731 HVSMEa0008E02f Hordeum vulgare seedl... 48 4e-004
gb|CA016523.1|CA016523 HV08I24u HV Hordeum vulgare subsp. v... 44 0.007
gb|BF065670.2|BF065670 HV_CEb0013E24f Hordeum vulgare seedl... 42 0.027
gb|AL509758.1|AL509758 AL509758 Hordeum vulgare Barke devel... 38 0.42
gb|BF628779.2|BF628779 HVSMEb0008B22f Hordeum vulgare seedl... 38 0.42
gb|BF628789.2|BF628789 HVSMEb0008D18f Hordeum vulgare seedl... 38 0.42
>gb|BF620291.2|BF620291 HVSMEc0019F18f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0019F18f, mRNA sequence
Length = 689
Score = 60.0 bits (30), Expect = 1e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 631 acggccgggtgcgcgagcacctcctcctgcggcgccca 668
||||||||||||| |||||||||||||||||||||||
Sbjct: 633 acggccgggtgcggaagcacctcctcctgcggcgccca 596
>gb|BF257303.2|BF257303 HVSMEf0012H19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012H19f, mRNA sequence
Length = 847
Score = 60.0 bits (30), Expect = 1e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 631 acggccgggtgcgcgagcacctcctcctgcggcgccca 668
|||||||||||| ||||||||||||||||||||||||
Sbjct: 433 acggccgggtgccggagcacctcctcctgcggcgccca 396
>gb|AJ462135.1|AJ462135 AJ462135 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200058E12F1, mRNA sequence
Length = 360
Score = 60.0 bits (30), Expect = 1e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 631 acggccgggtgcgcgagcacctcctcctgcggcgccca 668
|||||||||||| ||||||||||||||||||||||||
Sbjct: 66 acggccgggtgccggagcacctcctcctgcggcgccca 29
>gb|CA018416.1|CA018416 HV08I24r HV Hordeum vulgare subsp. vulgare cDNA clone HV08I24
5-PRIME, mRNA sequence
Length = 647
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcctcc 657
|||||||||||| |||| |||||||| |||||||||| ||||| |||||||||| |
Sbjct: 196 gagttccaaccgctgtgcgtgaggaaggcgccgacggcggggtggtttagcacctcctgc 137
Query: 658 tgcgg 662
|||||
Sbjct: 136 tgcgg 132
>gb|BF622731.2|BF622731 HVSMEa0008E02f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0008E02f, mRNA sequence
Length = 718
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtg 641
|||||||||||| |||| |||||||| |||||||||| |||||
Sbjct: 546 gagttccaaccgctgtgcgtgaggaaggcgccgacggcggggtg 503
>gb|CA016523.1|CA016523 HV08I24u HV Hordeum vulgare subsp. vulgare cDNA clone HV08I24
3-PRIME, mRNA sequence
Length = 487
Score = 44.1 bits (22), Expect = 0.007
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggc 635
|||||||||||| |||| |||||||| ||||||||||
Sbjct: 450 gagttccaaccgctgtgcgtgaggaaggcgccgacggc 487
>gb|BF065670.2|BF065670 HV_CEb0013E24f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0013E24f, mRNA sequence
Length = 573
Score = 42.1 bits (21), Expect = 0.027
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcctcc 657
|||||||||||| |||| |||||||| | |||||||| ||||| |||||||||| |
Sbjct: 85 gagttccaaccgctgtgcgtgaggaaggccccgacggcggggtggtttagcacctcctgc 26
Query: 658 tgcgg 662
|||||
Sbjct: 25 tgcgg 21
>gb|AL509758.1|AL509758 AL509758 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02M14u 3',
mRNA sequence
Length = 589
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 402 ctccttgatctcctcccct 420
|||||||||||||||||||
Sbjct: 465 ctccttgatctcctcccct 483
>gb|BF628779.2|BF628779 HVSMEb0008B22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008B22f, mRNA sequence
Length = 741
Score = 38.2 bits (19), Expect = 0.42
Identities = 55/67 (82%)
Strand = Plus / Minus
Query: 594 ggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctc 653
|||||||||||| ||| ||| |||||||| |||||| ||||||||| |||||| |
Sbjct: 488 ggtggagttccagccgcagtgtgtgaggaagacgccgagcgccgggtgctgcagcaccgc 429
Query: 654 ctcctgc 660
|||||||
Sbjct: 428 ctcctgc 422
>gb|BF628789.2|BF628789 HVSMEb0008D18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008D18f, mRNA sequence
Length = 769
Score = 38.2 bits (19), Expect = 0.42
Identities = 55/67 (82%)
Strand = Plus / Minus
Query: 594 ggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctc 653
|||||||||||| ||| ||| |||||||| |||||| ||||||||| |||||| |
Sbjct: 488 ggtggagttccagccgcagtgtgtgaggaagacgccgagcgccgggtgctgcagcaccgc 429
Query: 654 ctcctgc 660
|||||||
Sbjct: 428 ctcctgc 422
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 101,605
Number of Sequences: 312970
Number of extensions: 101605
Number of successful extensions: 31757
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31743
Number of HSP's gapped (non-prelim): 14
length of query: 774
length of database: 175,134,539
effective HSP length: 19
effective length of query: 755
effective length of database: 169,188,109
effective search space: 127737022295
effective search space used: 127737022295
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)