BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440450.2.1
(1291 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ764915.1|BQ764915 EBca01_SQ005_B12_R carpel, pre-anthe... 96 3e-018
gb|BU990110.1|BU990110 HF24B24r HF Hordeum vulgare subsp. v... 96 3e-018
gb|AL501191.1|AL501191 AL501191 Hordeum vulgare Barke roots... 40 0.18
gb|AL503769.1|AL503769 AL503769 Hordeum vulgare Barke roots... 40 0.18
gb|BI948284.1|BI948284 HVSMEl0008O08f Hordeum vulgare spike... 40 0.18
gb|BE194744.3|BE194744 HVSMEh0086L18f Hordeum vulgare 5-45 ... 40 0.18
gb|BM815931.1|BM815931 HC107A05_SK.ab1 HC Hordeum vulgare s... 40 0.18
gb|BJ472663.1|BJ472663 BJ472663 K. Sato unpublished cDNA li... 40 0.18
gb|BJ476613.1|BJ476613 BJ476613 K. Sato unpublished cDNA li... 40 0.18
>gb|BQ764915.1|BQ764915 EBca01_SQ005_B12_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_B12 5', mRNA sequence
Length = 657
Score = 95.6 bits (48), Expect = 3e-018
Identities = 171/212 (80%)
Strand = Plus / Minus
Query: 835 ctcattttcccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaac 894
||||||| ||||||| ||||| |||||| |||| ||||||||||||||| |||| ||
Sbjct: 406 ctcatttgcccagcggttcacttctatcctgcctgtaccatcatcaagaacgaattgtac 347
Query: 895 atctgtgacacgctcaaccttacctagcatgcgtccaacaagcctaatcgtagacacctc 954
||||||||| ||||| | |||| | ||||||||| |||||||||| ||| ||||||||
Sbjct: 346 atctgtgacccgctctatcttattcatcatgcgtcctacaagcctaaccgtggacacctc 287
Query: 955 aacgccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtccatggtctg 1014
|| |||| |||||| | ||| |||| || |||| || | |||||||| ||||
Sbjct: 286 ggttccattgacagcgaaactggacttgtcgtcgttggtctgggtggcgtccataatctg 227
Query: 1015 tttcacggtgagcgggagcagcgtctgcgcgc 1046
|| ||||||||||||||||||||||||||||
Sbjct: 226 cttgacggtgagcgggagcagcgtctgcgcgc 195
Score = 54.0 bits (27), Expect = 1e-005
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 1085 gtggactgtgagggcatgaagcccccgccgccgaagagcgcgttagcgttcccggcgcca 1144
|||| ||| |||||||||||||| ||||||| |||||| | ||| ||||| |||||||
Sbjct: 153 gtggtctgggagggcatgaagccgccgccgctgaagagggtgttggcgttggcggcgccg 94
Query: 1145 ccgctgcctccgtcgtagt 1163
|||| | |||||||||||
Sbjct: 93 ccgccgtttccgtcgtagt 75
>gb|BU990110.1|BU990110 HF24B24r HF Hordeum vulgare subsp. vulgare cDNA clone HF24B24
5-PRIME, mRNA sequence
Length = 593
Score = 95.6 bits (48), Expect = 3e-018
Identities = 171/212 (80%)
Strand = Plus / Minus
Query: 835 ctcattttcccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaac 894
||||||| ||||||| ||||| |||||| |||| ||||||||||||||| |||| ||
Sbjct: 304 ctcatttgcccagcggttcacttctatcctgcctgtaccatcatcaagaacgaattgtac 245
Query: 895 atctgtgacacgctcaaccttacctagcatgcgtccaacaagcctaatcgtagacacctc 954
||||||||| ||||| | |||| | ||||||||| |||||||||| ||| ||||||||
Sbjct: 244 atctgtgacccgctctatcttattcatcatgcgtcctacaagcctaaccgtggacacctc 185
Query: 955 aacgccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtccatggtctg 1014
|| |||| |||||| | ||| |||| || |||| || | |||||||| ||||
Sbjct: 184 ggttccattgacagcgaaactggacttgtcgtcgttggtctgggtggcgtccataatctg 125
Query: 1015 tttcacggtgagcgggagcagcgtctgcgcgc 1046
|| ||||||||||||||||||||||||||||
Sbjct: 124 cttgacggtgagcgggagcagcgtctgcgcgc 93
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1085 gtggactgtgagggcatgaagcccccgccgccgaagag 1122
|||| ||| |||||||||||||| ||||||| ||||||
Sbjct: 51 gtggtctgggagggcatgaagccgccgccgctgaagag 14
>gb|AL501191.1|AL501191 AL501191 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03F22u 3', mRNA sequence
Length = 402
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1258 agtgcgggacgcgggagaac 1277
||||||||||||||||||||
Sbjct: 310 agtgcgggacgcgggagaac 291
>gb|AL503769.1|AL503769 AL503769 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03F22T 5', mRNA sequence
Length = 409
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1258 agtgcgggacgcgggagaac 1277
||||||||||||||||||||
Sbjct: 108 agtgcgggacgcgggagaac 127
>gb|BI948284.1|BI948284 HVSMEl0008O08f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0008O08f, mRNA sequence
Length = 901
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1258 agtgcgggacgcgggagaac 1277
||||||||||||||||||||
Sbjct: 107 agtgcgggacgcgggagaac 126
>gb|BE194744.3|BE194744 HVSMEh0086L18f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0086L18f, mRNA sequence
Length = 493
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1258 agtgcgggacgcgggagaac 1277
||||||||||||||||||||
Sbjct: 128 agtgcgggacgcgggagaac 147
>gb|BM815931.1|BM815931 HC107A05_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC107A05_SK.ab1 similar to (AF324993) AT5g17460
[Arabidopsis thaliana],hypothetical protein K3M16_30 -
Arabidopsis thaliana gi|9755770|emb|CAC01890.1|
(AL391150) hypothetical protein [Arabidopsis
thaliana],hypothetical protein [Oryza sativa],, mRNA
sequence
Length = 941
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1258 agtgcgggacgcgggagaac 1277
||||||||||||||||||||
Sbjct: 151 agtgcgggacgcgggagaac 170
>gb|BJ472663.1|BJ472663 BJ472663 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal35p17 5', mRNA sequence
Length = 429
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1258 agtgcgggacgcgggagaac 1277
||||||||||||||||||||
Sbjct: 112 agtgcgggacgcgggagaac 131
>gb|BJ476613.1|BJ476613 BJ476613 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal35p17 3', mRNA sequence
Length = 399
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1258 agtgcgggacgcgggagaac 1277
||||||||||||||||||||
Sbjct: 287 agtgcgggacgcgggagaac 268
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 112,425
Number of Sequences: 312970
Number of extensions: 112425
Number of successful extensions: 35048
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35028
Number of HSP's gapped (non-prelim): 20
length of query: 1291
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1272
effective length of database: 169,188,109
effective search space: 215207274648
effective search space used: 215207274648
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)