BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440419.2.1
(616 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG344802.2|BG344802 HVSMEg0016C08f Hordeum vulgare pre-a... 375 e-102
gb|CA026428.1|CA026428 HZ55O06r HZ Hordeum vulgare subsp. v... 369 e-101
gb|BF260181.3|BF260181 HVSMEf0021F04f Hordeum vulgare seedl... 341 2e-092
gb|CB859738.1|CB859738 HI11H04w HI Hordeum vulgare subsp. v... 258 2e-067
gb|BI956646.1|BI956646 HVSMEn0004J02f Hordeum vulgare rachi... 202 1e-050
gb|BI959125.1|BI959125 HVSMEn0018E15f Hordeum vulgare rachi... 176 6e-043
gb|CA031878.1|CA031878 HX11G06r HX Hordeum vulgare subsp. v... 111 3e-023
gb|CA025229.1|CA025229 HZ51N21r HZ Hordeum vulgare subsp. v... 86 2e-015
gb|AL502543.1|AL502543 AL502543 Hordeum vulgare Barke roots... 80 1e-013
gb|AL505263.1|AL505263 AL505263 Hordeum vulgare Barke roots... 80 1e-013
gb|BF259968.2|BF259968 HVSMEf0020M01f Hordeum vulgare seedl... 80 1e-013
gb|CA017259.1|CA017259 HV14F14u HV Hordeum vulgare subsp. v... 80 1e-013
gb|CA020103.1|CA020103 HV14F14r HV Hordeum vulgare subsp. v... 80 1e-013
gb|CA030032.1|CA030032 HX05O06r HX Hordeum vulgare subsp. v... 80 1e-013
gb|BI779142.2|BI779142 EBro01_SQ003_C03_R root, 3 week, hyd... 46 0.001
gb|BM443426.2|BM443426 EBro02_SQ005_B10_R root, 3 week, hyd... 46 0.001
gb|BI779141.2|BI779141 EBro01_SQ003_C02_R root, 3 week, hyd... 44 0.005
gb|BI779064.2|BI779064 EBro01_SQ002_M23_R root, 3 week, hyd... 42 0.021
gb|BQ763148.1|BQ763148 EBro02_SQ007_J08_R root, 3 week, hyd... 42 0.021
gb|BG417085.1|BG417085 HVSMEk0016D04f Hordeum vulgare testa... 40 0.083
gb|BQ768271.1|BQ768271 EBro08_SQ011_B07_R root, 3 week, dro... 38 0.33
>gb|BG344802.2|BG344802 HVSMEg0016C08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016C08f, mRNA sequence
Length = 794
Score = 375 bits (189), Expect = e-102
Identities = 380/444 (85%)
Strand = Plus / Minus
Query: 120 catgagcgcggtggccgnggcgccacaggatacagcctcgttgggcaccttggcgacgag 179
||||||||||||||||| |||| ||| | || ||||| ||||||||||| ||||| |
Sbjct: 478 catgagcgcggtggccgtagcgctgcagaaaacggcctccttgggcaccttcccgacgcg 419
Query: 180 gtcgacagcctcagcgaagatgacgcccatgcccatgtggaggtgcggctcgatatggca 239
|||| |||| || |||||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 418 ttcgatgacctcggcaaagatgacccccatgcccatgtggaggtgcggctcgatgtgtca 359
Query: 240 gtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgtccacccgtacgg 299
|||||| ||||||||||| |||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 358 gtggaacgcccacacgccggggttgtccgccacaaaccgcagcgcggtccacccgtacgg 299
Query: 300 aaagatgaccgccgtgttccgcagcggcgggtcccggaggttgagccgcgcttcgtcggc 359
||||| ||||||||||||||||||||||||| | ||||| |||| ||| |||||||
Sbjct: 298 gaagatcaccgccgtgttccgcagcggcgggttcaccaggttcagcctcgccgcgtcggc 239
Query: 360 ggcgtccccgcggtacgcgccgtcgccgtagcccagcacccagaagtcgtggccgtggag 419
|||||| || | |||||| || |||||||| |||||||||||||||||||| ||||| ||
Sbjct: 238 ggcgtcgcccctgtacgccccctcgccgtaccccagcacccagaagtcgtgcccgtgcag 179
Query: 420 gtgccacgggtgcacctcgctgacgttgcgcgacagcgcgttggcgttctggagcagcac 479
||||||||||||||||||||| |||||| || |||||||||||||||||| |||| |||
Sbjct: 178 gtgccacgggtgcacctcgctcacgttgtgctgcagcgcgttggcgttctgaagcaccac 119
Query: 480 gtcgacggtggtgttgtgcgccaggacgtacacgttgtcccccgccgtcgtgttggggtt 539
||| || ||||||||||| || ||||||||||||||||||| ||||||||| |||||
Sbjct: 118 gtccaccgtggtgttgtggcggagcacgtacacgttgtcccccgtcgtcgtgtttgggtt 59
Query: 540 cggcggcggcagcgtcacgtcgta 563
||| |||| |||||||||||||
Sbjct: 58 gtgcgtcggccgcgtcacgtcgta 35
>gb|CA026428.1|CA026428 HZ55O06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ55O06
5-PRIME, mRNA sequence
Length = 479
Score = 369 bits (186), Expect = e-101
Identities = 323/369 (87%)
Strand = Plus / Minus
Query: 101 atcacaggtgaccgccggccatgagcgcggtggccgnggcgccacaggatacagcctcgt 160
|||| |||||| ||||| ||||||||||||||||| |||||| ||||| || ||||| |
Sbjct: 379 atcagaggtgatcgccgttcatgagcgcggtggccgtggcgccgcaggagacggcctcct 320
Query: 161 tgggcaccttggcgacgaggtcgacagcctcagcgaagatgacgcccatgcccatgtgga 220
|||||||||| ||||| | |||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 319 tgggcaccttcccgacgcgttcgatggcctcggcgaagatgacccccatgcccatgtgga 260
Query: 221 ggtgcggctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccgga 280
||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||| |
Sbjct: 259 ggtgcggctcgatgtggcagtggaacgcccacaccccggggttgtccgccacgaaccgca 200
Query: 281 gcatcgtccacccgtacggaaagatgaccgccgtgttccgcagcggcgggtcccggaggt 340
|| ||||||||||||||| ||||| ||||||||||||||||||||||||| | ||||
Sbjct: 199 gcgccgtccacccgtacgggaagatcaccgccgtgttccgcagcggcgggttcaccaggt 140
Query: 341 tgagccgcgcttcgtcggcggcgtccccgcggtacgcgccgtcgccgtagcccagcaccc 400
| |||| ||| ||||||||||||| || | |||||| || |||||||| ||||||||||
Sbjct: 139 tcagcctcgccgcgtcggcggcgtcgcccctgtacgccccctcgccgtaccccagcaccc 80
Query: 401 agaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttgcgcgacagcgcgt 460
|||||||||| ||||| ||||||||||||||||||||||| |||||| || ||||||||
Sbjct: 79 agaagtcgtgcccgtgcaggtgccacgggtgcacctcgctcacgttgtgctgcagcgcgt 20
Query: 461 tggcgttct 469
|||||||||
Sbjct: 19 tggcgttct 11
>gb|BF260181.3|BF260181 HVSMEf0021F04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021F04f, mRNA sequence
Length = 650
Score = 341 bits (172), Expect = 2e-092
Identities = 336/391 (85%)
Strand = Plus / Minus
Query: 107 ggtgaccgccggccatgagcgcggtggccgnggcgccacaggatacagcctcgttgggca 166
||||| ||||| ||||||||||||||||| |||||| ||| | || ||||| |||||||
Sbjct: 392 ggtgatcgccgttcatgagcgcggtggccgtggcgccgcagaagacggcctccttgggca 333
Query: 167 ccttggcgacgaggtcgacagcctcagcgaagatgacgcccatgcccatgtggaggtgcg 226
|||| ||||| | |||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 332 ccttcccgacgcgttcgatggcctcggcgaagatgacccccatgcccatgtggaggtgcg 273
Query: 227 gctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcg 286
||||||| ||||||||||| |||||||| || |||||||||||||||||||| ||| ||
Sbjct: 272 gctcgatgtggcagtggaacgcccacaccccggggttgtccgccacgaaccgcagcgccg 213
Query: 287 tccacccgtacggaaagatgaccgccgtgttccgcagcggcgggtcccggaggttgagcc 346
||||||||||||| ||||| ||||||||||||||| |||||||| | ||||| ||||
Sbjct: 212 tccacccgtacgggaagatctccgccgtgttccgcaacggcgggttcaccaggttcagcc 153
Query: 347 gcgcttcgtcggcggcgtccccgcggtacgcgccgtcgccgtagcccagcacccagaagt 406
||| ||||||||||||| || | |||||| || ||||||| |||||||||||||
Sbjct: 152 tcgccgcgtcggcggcgtcgcccctgtacgccccctcgccgttatttagcacccagaagt 93
Query: 407 cgtggccgtggaggtgccacgggtgcacctcgctgacgttgcgcgacagcgcgttggcgt 466
|||| ||||| ||||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct: 92 cgtgcccgtgcaggtgccacgggtgcacctcgctcacgttgtgctgcagcgcgttggcgt 33
Query: 467 tctggagcagcacgtcgacggtggtgttgtg 497
||||||||| |||||| || |||||||||||
Sbjct: 32 tctggagcaccacgtccaccgtggtgttgtg 2
>gb|CB859738.1|CB859738 HI11H04w HI Hordeum vulgare subsp. vulgare cDNA clone HI11H04
3-PRIME, mRNA sequence
Length = 514
Score = 258 bits (130), Expect = 2e-067
Identities = 232/265 (87%), Gaps = 1/265 (0%)
Strand = Plus / Plus
Query: 101 atcacaggtgaccgccggccatgagcgcggtggccgnggcgccacaggatacagcctcgt 160
|||| |||||| ||||| ||||||||||||||||| |||||| ||||| || ||||| |
Sbjct: 235 atcagaggtgatcgccgttcatgagcgcggtggccgtggcgccgcaggagacggcctcct 294
Query: 161 tgggcaccttggcgacgaggtcgacagcctcagcgaagatgacgcccatgcccatgtgga 220
|||||||||| ||||| | |||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 295 tgggcaccttcccgacgcgttcgatggcctcggcgaagatgacccccatgcccatgtgga 354
Query: 221 ggtgcggctcgatatggcagtggaaggcccacacgcccgggttgtccgccacgaaccgga 280
||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||| |
Sbjct: 355 ggtgcggctcgatgtggcagtggaacgcccacaccccggggttgtccgccacgaaccgca 414
Query: 281 gcatcgtccacccgtacggaaagatgaccgccgtgttccgcagcggcgggtcccggaggt 340
|| ||||||||||||||| ||||| ||||||||||||||||||||||||| || ||||
Sbjct: 415 gcgccgtccacccgtacgggaagatcaccgccgtgttccgcagcggcgggttcc-caggt 473
Query: 341 tgagccgcgcttcgtcggcggcgtc 365
| |||| ||| |||||||||||||
Sbjct: 474 tcagcctcgccgcgtcggcggcgtc 498
>gb|BI956646.1|BI956646 HVSMEn0004J02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004J02f, mRNA sequence
Length = 810
Score = 202 bits (102), Expect = 1e-050
Identities = 162/182 (89%)
Strand = Plus / Minus
Query: 382 tcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctg 441
|||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 536 tcgccgtaccccagcacccagaagtcgtgcccgtgcaggtgccacgggtgcacctcgctc 477
Query: 442 acgttgcgcgacagcgcgttggcgttctggagcagcacgtcgacggtggtgttgtgcgcc 501
|||||| || ||||||||||||||||||||||| |||||| || |||||||||||
Sbjct: 476 acgttgtgctgcagcgcgttggcgttctggagcaccacgtccaccgtggtgttgtggcgg 417
Query: 502 aggacgtacacgttgtcccccgccgtcgtgttggggttcggcggcggcagcgtcacgtcg 561
|| ||||||||||||||||||| ||||||||| ||||| |||||||| |||||||||||
Sbjct: 416 agcacgtacacgttgtcccccgtcgtcgtgtttgggttgtgcggcggccgcgtcacgtcg 357
Query: 562 ta 563
||
Sbjct: 356 ta 355
Score = 60.0 bits (30), Expect = 9e-008
Identities = 85/100 (85%), Gaps = 3/100 (3%)
Strand = Plus / Minus
Query: 235 tggcagtggaa-ggcccacacgcccgggttgtccgccacgaaccggag-catcgtccacc 292
||||||||||| ||||||| | || |||||||||||| ||||||| || | ||||||||
Sbjct: 686 tggcagtggaacggcccaccccccggggttgtccgccccgaaccgcaggcgccgtccacc 627
Query: 293 cg-tacggaaagatgaccgccgtgttccgcagcggcgggt 331
|| |||| ||||| ||||| ||||||||||||||||||
Sbjct: 626 cggnacgggaagatcaccgcgntgttccgcagcggcgggt 587
>gb|BI959125.1|BI959125 HVSMEn0018E15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018E15f, mRNA sequence
Length = 656
Score = 176 bits (89), Expect = 6e-043
Identities = 152/173 (87%)
Strand = Plus / Minus
Query: 391 cccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttgcgc 450
||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||| ||
Sbjct: 527 cccagcacccaaaagtcgtgcccgtgcaggtgccacgggtgcacctcgctcacgttgtgc 468
Query: 451 gacagcgcgttggcgttctggagcagcacgtcgacggtggtgttgtgcgccaggacgtac 510
||||||||||||||| ||||||| |||||| || ||||||||||| || ||||||
Sbjct: 467 tgcagcgcgttggcgttttggagcaccacgtccaccgtggtgttgtggcggagcacgtac 408
Query: 511 acgttgtcccccgccgtcgtgttggggttcggcggcggcagcgtcacgtcgta 563
||||||||||||| ||||||||| ||||| |||||||| |||||||||||||
Sbjct: 407 acgttgtcccccgtcgtcgtgtttgggttgtgcggcggccgcgtcacgtcgta 355
>gb|CA031878.1|CA031878 HX11G06r HX Hordeum vulgare subsp. vulgare cDNA clone HX11G06
5-PRIME, mRNA sequence
Length = 624
Score = 111 bits (56), Expect = 3e-023
Identities = 119/140 (85%)
Strand = Plus / Minus
Query: 194 cgaagatgacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccaca 253
|||||| | ||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 533 cgaagacggcgcccatccccatgtggaggtgcggctcgatgtggcagtggaacgcccacg 474
Query: 254 cgcccgggttgtccgccacgaaccggagcatcgtccacccgtacggaaagatgaccgccg 313
| || |||||| || |||||||||| | ||||||||||| ||| || | |||| |||
Sbjct: 473 ctccgacgttgtcggcgacgaaccggatcgccgtccacccgtgcgggaacacgaccaccg 414
Query: 314 tgttccgcagcggcgggtcc 333
|||||| |||||||||||||
Sbjct: 413 tgttcctcagcggcgggtcc 394
Score = 85.7 bits (43), Expect = 2e-015
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 382 tcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
|||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 360 tcgccgtaccccagcacccagaagtcgtggccgtgcaggtgccacgggtgc 310
>gb|CA025229.1|CA025229 HZ51N21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51N21
5-PRIME, mRNA sequence
Length = 489
Score = 85.7 bits (43), Expect = 2e-015
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 382 tcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
|||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 467 tcgccgtaccccagcacccagaagtcgtggccgtgcaggtgccacgggtgc 417
>gb|AL502543.1|AL502543 AL502543 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07O19u 3', mRNA sequence
Length = 550
Score = 79.8 bits (40), Expect = 1e-013
Identities = 82/96 (85%)
Strand = Plus / Plus
Query: 201 gacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccacacgcccgg 260
|||||||||||||||| || ||||| |||||| ||||||||||||||||| ||||| ||
Sbjct: 348 gacgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaaggcccagacgccggg 407
Query: 261 gttgtccgccacgaaccggagcatcgtccacccgta 296
|||||| ||| |||||| ||| |||||| |||||
Sbjct: 408 gttgtcggcccggaaccgcagcgccgtccagccgta 443
>gb|AL505263.1|AL505263 AL505263 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07O19V 5', mRNA sequence
Length = 612
Score = 79.8 bits (40), Expect = 1e-013
Identities = 82/96 (85%)
Strand = Plus / Minus
Query: 201 gacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccacacgcccgg 260
|||||||||||||||| || ||||| |||||| ||||||||||||||||| ||||| ||
Sbjct: 292 gacgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaaggcccagacgccggg 233
Query: 261 gttgtccgccacgaaccggagcatcgtccacccgta 296
|||||| ||| |||||| ||| |||||| |||||
Sbjct: 232 gttgtcggcccggaaccgcagcgccgtccagccgta 197
Score = 69.9 bits (35), Expect = 9e-011
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 399 ccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttgcgcgacagcgc 458
||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||
Sbjct: 97 ccagaagtcgtggccgtggaggtgccacgggtgggtctcgctgttgttgggcgccagcat 38
Query: 459 gttggcgttct 469
|||||||||||
Sbjct: 37 gttggcgttct 27
>gb|BF259968.2|BF259968 HVSMEf0020M01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020M01f, mRNA sequence
Length = 536
Score = 79.8 bits (40), Expect = 1e-013
Identities = 82/96 (85%)
Strand = Plus / Minus
Query: 201 gacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccacacgcccgg 260
|||||||||||||||| || ||||| |||||| ||||||||||||||||| ||||| ||
Sbjct: 498 gacgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaaggcccagacgccggg 439
Query: 261 gttgtccgccacgaaccggagcatcgtccacccgta 296
|||||| ||| |||||| ||| |||||| |||||
Sbjct: 438 gttgtcggcccggaaccgcagcgccgtccagccgta 403
Score = 79.8 bits (40), Expect = 1e-013
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 399 ccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttgcgcgacagcgc 458
||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||
Sbjct: 303 ccagaagtcgtggccgtggaggtgccacgggtgggtctcgctgttgttgggcgccagcat 244
Query: 459 gttggcgttctggagcagcacgtc 482
|||||||||||| |||| ||||||
Sbjct: 243 gttggcgttctgcagcaccacgtc 220
>gb|CA017259.1|CA017259 HV14F14u HV Hordeum vulgare subsp. vulgare cDNA clone HV14F14
3-PRIME, mRNA sequence
Length = 419
Score = 79.8 bits (40), Expect = 1e-013
Identities = 82/96 (85%)
Strand = Plus / Plus
Query: 201 gacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccacacgcccgg 260
|||||||||||||||| || ||||| |||||| ||||||||||||||||| ||||| ||
Sbjct: 315 gacgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaaggcccagacgccggg 374
Query: 261 gttgtccgccacgaaccggagcatcgtccacccgta 296
|||||| ||| |||||| ||| |||||| |||||
Sbjct: 375 gttgtcggcccggaaccgcagcgccgtccagccgta 410
>gb|CA020103.1|CA020103 HV14F14r HV Hordeum vulgare subsp. vulgare cDNA clone HV14F14
5-PRIME, mRNA sequence
Length = 504
Score = 79.8 bits (40), Expect = 1e-013
Identities = 82/96 (85%)
Strand = Plus / Minus
Query: 201 gacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccacacgcccgg 260
|||||||||||||||| || ||||| |||||| ||||||||||||||||| ||||| ||
Sbjct: 499 gacgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaaggcccagacgccggg 440
Query: 261 gttgtccgccacgaaccggagcatcgtccacccgta 296
|||||| ||| |||||| ||| |||||| |||||
Sbjct: 439 gttgtcggcccggaaccgcagcgccgtccagccgta 404
Score = 79.8 bits (40), Expect = 1e-013
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 399 ccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttgcgcgacagcgc 458
||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||
Sbjct: 304 ccagaagtcgtggccgtggaggtgccacgggtgggtctcgctgttgttgggcgccagcat 245
Query: 459 gttggcgttctggagcagcacgtc 482
|||||||||||| |||| ||||||
Sbjct: 244 gttggcgttctgcagcaccacgtc 221
>gb|CA030032.1|CA030032 HX05O06r HX Hordeum vulgare subsp. vulgare cDNA clone HX05O06
5-PRIME, mRNA sequence
Length = 654
Score = 79.8 bits (40), Expect = 1e-013
Identities = 82/96 (85%)
Strand = Plus / Minus
Query: 201 gacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccacacgcccgg 260
|||||||||||||||| || ||||| |||||| ||||||||||||||||| ||||| ||
Sbjct: 414 gacgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaaggcccagacgccggg 355
Query: 261 gttgtccgccacgaaccggagcatcgtccacccgta 296
|||||| ||| |||||| ||| |||||| |||||
Sbjct: 354 gttgtcggcccggaaccgcagcgccgtccagccgta 319
Score = 79.8 bits (40), Expect = 1e-013
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 399 ccagaagtcgtggccgtggaggtgccacgggtgcacctcgctgacgttgcgcgacagcgc 458
||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||
Sbjct: 219 ccagaagtcgtggccgtggaggtgccacgggtgggtctcgctgttgttgggcgccagcat 160
Query: 459 gttggcgttctggagcagcacgtc 482
|||||||||||| |||| ||||||
Sbjct: 159 gttggcgttctgcagcaccacgtc 136
>gb|BI779142.2|BI779142 EBro01_SQ003_C03_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_C03 5', mRNA sequence
Length = 575
Score = 46.1 bits (23), Expect = 0.001
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 394 agcacccagaagtcgtggccgtggaggtgccacgggtgc 432
|||||||||||||| || || ||||| ||||||||||||
Sbjct: 501 agcacccagaagtcatgaccatggagatgccacgggtgc 463
>gb|BM443426.2|BM443426 EBro02_SQ005_B10_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ005_B10 5', mRNA sequence
Length = 605
Score = 46.1 bits (23), Expect = 0.001
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 394 agcacccagaagtcgtggccgtggaggtgccacgggtgc 432
|||||||||||||| || || ||||| ||||||||||||
Sbjct: 604 agcacccagaagtcatgaccatggagatgccacgggtgc 566
>gb|BI779141.2|BI779141 EBro01_SQ003_C02_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_C02 5', mRNA sequence
Length = 504
Score = 44.1 bits (22), Expect = 0.005
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 395 gcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||||| || || ||||| ||||||||||||
Sbjct: 504 gcacccagaagtcatgaccatggagatgccacgggtgc 467
>gb|BI779064.2|BI779064 EBro01_SQ002_M23_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ002_M23 5', mRNA sequence
Length = 414
Score = 42.1 bits (21), Expect = 0.021
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 238 cagtggaaggcccacacgcccgggttgtccgcc 270
||||||||| |||||| |||||||||||||||
Sbjct: 170 cagtggaagagccacacccccgggttgtccgcc 138
>gb|BQ763148.1|BQ763148 EBro02_SQ007_J08_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ007_J08 5', mRNA sequence
Length = 306
Score = 42.1 bits (21), Expect = 0.021
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 238 cagtggaaggcccacacgcccgggttgtccgcc 270
||||||||| |||||| |||||||||||||||
Sbjct: 85 cagtggaagagccacacccccgggttgtccgcc 53
>gb|BG417085.1|BG417085 HVSMEk0016D04f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0016D04f, mRNA sequence
Length = 492
Score = 40.1 bits (20), Expect = 0.083
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 360 ggcgtccccgcggtacgcgccgtc 383
||||||||||||| ||||||||||
Sbjct: 219 ggcgtccccgcggcacgcgccgtc 196
>gb|BQ768271.1|BQ768271 EBro08_SQ011_B07_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_B07 5', mRNA sequence
Length = 527
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 538 ttcggcggcggcagcgtca 556
|||||||||||||||||||
Sbjct: 118 ttcggcggcggcagcgtca 136
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 98,814
Number of Sequences: 312970
Number of extensions: 98814
Number of successful extensions: 28110
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28070
Number of HSP's gapped (non-prelim): 33
length of query: 616
length of database: 175,134,539
effective HSP length: 19
effective length of query: 597
effective length of database: 169,188,109
effective search space: 101005301073
effective search space used: 101005301073
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)