BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.1
(608 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM443218.2|BM443218 EBro02_SQ003_B18_R root, 3 week, hyd... 256 7e-067
gb|BQ754963.1|BQ754963 EBed02_SQ003_F05_R endosperm, 8 DPA,... 256 7e-067
gb|BU995200.1|BU995200 HM09I11r HM Hordeum vulgare subsp. v... 256 7e-067
gb|CA028142.1|CA028142 HZ61C01r HZ Hordeum vulgare subsp. v... 256 7e-067
gb|CB881346.1|CB881346 HM09I11w HM Hordeum vulgare subsp. v... 256 7e-067
gb|CA027679.1|CA027679 HZ59K23r HZ Hordeum vulgare subsp. v... 252 1e-065
gb|BQ763913.1|BQ763913 EBro03_SQ005_B22_R root, 3 week, wat... 246 7e-064
gb|BG344056.2|BG344056 HVSMEg0007I06f Hordeum vulgare pre-a... 244 3e-063
gb|BM376551.2|BM376551 EBem05_SQ002_I19_R embryo, 14 DPA, n... 244 3e-063
gb|CA022127.1|CA022127 HZ42D22r HZ Hordeum vulgare subsp. v... 244 3e-063
gb|CV054719.1|CV054719 BNEL112e5 Barley EST endosperm libra... 244 3e-063
gb|BG301284.2|BG301284 HVSMEb0020H09f Hordeum vulgare seedl... 242 1e-062
gb|AL506323.1|AL506323 AL506323 Hordeum vulgare Barke devel... 236 7e-061
gb|BE601861.1|BE601861 HVSMEh0099M19f Hordeum vulgare 5-45 ... 236 7e-061
gb|BF257863.2|BF257863 HVSMEf0014B05f Hordeum vulgare seedl... 236 7e-061
gb|BQ460746.1|BQ460746 HA06A19r HA Hordeum vulgare subsp. v... 236 7e-061
gb|BQ470436.1|BQ470436 HX02P15r HX Hordeum vulgare subsp. v... 236 7e-061
gb|BQ470789.1|BQ470789 HX04A15r HX Hordeum vulgare subsp. v... 236 7e-061
gb|BQ665534.1|BQ665534 HX04A15u HX Hordeum vulgare subsp. v... 236 7e-061
gb|BM375074.2|BM375074 EBem06_SQ002_E09_R embryo, 21 DPA, n... 236 7e-061
gb|BQ768186.1|BQ768186 EBro08_SQ010_M23_R root, 3 week, dro... 236 7e-061
gb|BU983354.1|BU983354 HA29H02r HA Hordeum vulgare subsp. v... 236 7e-061
gb|BU986773.1|BU986773 HF12N18r HF Hordeum vulgare subsp. v... 236 7e-061
gb|CK122930.1|CK122930 BES1824101e16 BES1824 Hordeum vulgar... 236 7e-061
gb|BQ757114.1|BQ757114 EBem10_SQ002_O01_R embryo, 2 Day ger... 232 1e-059
gb|AL509745.1|AL509745 AL509745 Hordeum vulgare Barke devel... 228 2e-058
gb|BG415007.2|BG415007 HVSMEk0004K11f Hordeum vulgare testa... 228 2e-058
gb|BM368232.2|BM368232 EBed01_SQ002_I20_R endosperm, 6 DPA,... 220 4e-056
gb|BM444749.1|BM444749 EBem09_SQ006_F19_R embryo, 1 Day ger... 165 2e-039
gb|BG344830.2|BG344830 HVSMEg0016E15f Hordeum vulgare pre-a... 139 1e-031
gb|AJ462715.1|AJ462715 AJ462715 S00002 Hordeum vulgare subs... 137 5e-031
gb|BQ658040.1|BQ658040 HA06A19u HA Hordeum vulgare subsp. v... 129 1e-028
gb|BM444395.1|BM444395 EBem09_SQ005_B04_R embryo, 1 Day ger... 127 5e-028
gb|BU987611.1|BU987611 HF15E01r HF Hordeum vulgare subsp. v... 127 5e-028
gb|BU983331.1|BU983331 HA29G02r HA Hordeum vulgare subsp. v... 125 2e-027
gb|BI948230.1|BI948230 HVSMEl0008L03f Hordeum vulgare spike... 44 0.005
gb|BM371243.2|BM371243 EBro04_SQ003_P12_R root, 3 week, sal... 44 0.005
gb|BF254937.2|BF254937 HVSMEf0005H13f Hordeum vulgare seedl... 40 0.082
gb|BF256038.2|BF256038 HVSMEf0008I24f Hordeum vulgare seedl... 40 0.082
gb|BI951621.1|BI951621 HVSMEm0001K18f Hordeum vulgare green... 40 0.082
gb|BF261410.2|BF261410 HV_CEa0001C22f Hordeum vulgare seedl... 40 0.082
gb|AW983286.3|AW983286 HVSMEg0010B10f Hordeum vulgare pre-a... 40 0.082
gb|BG345158.2|BG345158 HVSMEg0018O18f Hordeum vulgare pre-a... 40 0.082
gb|BQ460909.1|BQ460909 HE01N20r HE Hordeum vulgare subsp. v... 40 0.082
gb|BQ464834.1|BQ464834 HU01M10T HU Hordeum vulgare subsp. v... 40 0.082
gb|BQ464860.1|BQ464860 HU01O14T HU Hordeum vulgare subsp. v... 40 0.082
gb|BQ470732.1|BQ470732 HX03N22r HX Hordeum vulgare subsp. v... 40 0.082
gb|BQ471353.1|BQ471353 HV02C24r HV Hordeum vulgare subsp. v... 40 0.082
gb|BI779848.2|BI779848 EBem07_SQ001_D05_R embryo, 28 DPA, n... 40 0.082
gb|BQ761565.1|BQ761565 EBem10_SQ001_J02_R embryo, 2 Day ger... 40 0.082
gb|BQ767163.1|BQ767163 EBro08_SQ008_K06_R root, 3 week, dro... 40 0.082
gb|BU989278.1|BU989278 HF21E18r HF Hordeum vulgare subsp. v... 40 0.082
gb|BU989622.1|BU989622 HF22D22r HF Hordeum vulgare subsp. v... 40 0.082
gb|CA018410.1|CA018410 HV08I17r HV Hordeum vulgare subsp. v... 40 0.082
gb|CA019274.1|CA019274 HV11H10r HV Hordeum vulgare subsp. v... 40 0.082
gb|CA021235.1|CA021235 HZ39I05r HZ Hordeum vulgare subsp. v... 40 0.082
gb|CA025019.1|CA025019 HZ50P22r HZ Hordeum vulgare subsp. v... 40 0.082
gb|CA025197.1|CA025197 HZ51H18r HZ Hordeum vulgare subsp. v... 40 0.082
gb|CA030547.1|CA030547 HX07G05r HX Hordeum vulgare subsp. v... 40 0.082
gb|CK122660.1|CK122660 BES1824104p06 BES1824 Hordeum vulgar... 40 0.082
gb|AL507918.1|AL507918 AL507918 Hordeum vulgare Barke devel... 38 0.33
gb|AL507919.1|AL507919 AL507919 Hordeum vulgare Barke devel... 38 0.33
gb|BF622640.2|BF622640 HVSMEa0007I07f Hordeum vulgare seedl... 38 0.33
gb|BF627741.2|BF627741 HVSMEb0005K20f Hordeum vulgare seedl... 38 0.33
gb|BE196479.2|BE196479 HVSMEh0092G15f Hordeum vulgare 5-45 ... 38 0.33
gb|BE602532.2|BE602532 HVSMEh0099L08f Hordeum vulgare 5-45 ... 38 0.33
gb|BI953564.1|BI953564 HVSMEm0013E15f Hordeum vulgare green... 38 0.33
gb|BF262027.2|BF262027 HV_CEa0002N20f Hordeum vulgare seedl... 38 0.33
gb|BE214214.2|BE214214 HV_CEb0002L05f Hordeum vulgare seedl... 38 0.33
gb|BG415565.1|BG415565 HVSMEk0007A11f Hordeum vulgare testa... 38 0.33
gb|BF260545.3|BF260545 HVSMEf0022E17f Hordeum vulgare seedl... 38 0.33
gb|BM374600.1|BM374600 EBma05_SQ002_C01_R maternal, 12 DPA,... 38 0.33
gb|BQ462692.1|BQ462692 HI01L13T HI Hordeum vulgare subsp. v... 38 0.33
gb|BQ462934.1|BQ462934 HI02H16r HI Hordeum vulgare subsp. v... 38 0.33
gb|BQ467459.1|BQ467459 HS03N16r HS Hordeum vulgare subsp. v... 38 0.33
gb|BQ471521.1|BQ471521 HV02K24r HV Hordeum vulgare subsp. v... 38 0.33
gb|BU978618.1|BU978618 HA13M04r HA Hordeum vulgare subsp. v... 38 0.33
gb|BU986333.1|BU986333 HF11H06r HF Hordeum vulgare subsp. v... 38 0.33
gb|BU995992.1|BU995992 HM12A08r HM Hordeum vulgare subsp. v... 38 0.33
gb|BU999050.1|BU999050 HI13A06r HI Hordeum vulgare subsp. v... 38 0.33
gb|CA003773.1|CA003773 HS15I08r HS Hordeum vulgare subsp. v... 38 0.33
gb|CA008800.1|CA008800 HU12C09r HU Hordeum vulgare subsp. v... 38 0.33
gb|CA017397.1|CA017397 HV05B10r HV Hordeum vulgare subsp. v... 38 0.33
gb|CA032687.1|CA032687 HX13O14r HX Hordeum vulgare subsp. v... 38 0.33
gb|CK125683.1|CK125683 BES1824110a18 BES1824 Hordeum vulgar... 38 0.33
>gb|BM443218.2|BM443218 EBro02_SQ003_B18_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ003_B18 5', mRNA sequence
Length = 458
Score = 256 bits (129), Expect = 7e-067
Identities = 213/240 (88%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 265 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 206
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | |||||||||||| | ||| ||| ||||||||||||||||
Sbjct: 205 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 146
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 145 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 86
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg--ccgccgccgccgcagctgg 531
||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| |||||
Sbjct: 85 tgccgcaggtgaagcagcgaaccgggatgatcatcttcgatccgccgccgccgccgctgg 26
>gb|BQ754963.1|BQ754963 EBed02_SQ003_F05_R endosperm, 8 DPA, no treatment, cv Optic, EBed02
Hordeum vulgare subsp. vulgare cDNA clone
EBed02_SQ003_F05 5', mRNA sequence
Length = 533
Score = 256 bits (129), Expect = 7e-067
Identities = 213/240 (88%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 259 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 200
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | |||||||||||| | ||| ||| ||||||||||||||||
Sbjct: 199 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 140
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 139 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 80
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg--ccgccgccgccgcagctgg 531
||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| |||||
Sbjct: 79 tgccgcaggtgaagcagcgaaccgggatgatcatcttcgatccgccgccgccgccgctgg 20
>gb|BU995200.1|BU995200 HM09I11r HM Hordeum vulgare subsp. vulgare cDNA clone HM09I11
5-PRIME, mRNA sequence
Length = 558
Score = 256 bits (129), Expect = 7e-067
Identities = 213/240 (88%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 272 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 213
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | |||||||||||| | ||| ||| ||||||||||||||||
Sbjct: 212 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 153
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 152 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 93
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg--ccgccgccgccgcagctgg 531
||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| |||||
Sbjct: 92 tgccgcaggtgaagcagcgaaccgggatgatcatcttcgatccgccgccgccgccgctgg 33
>gb|CA028142.1|CA028142 HZ61C01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61C01
5-PRIME, mRNA sequence
Length = 506
Score = 256 bits (129), Expect = 7e-067
Identities = 213/240 (88%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 266 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 207
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | |||||||||||| | ||| ||| ||||||||||||||||
Sbjct: 206 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 147
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 146 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 87
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg--ccgccgccgccgcagctgg 531
||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| |||||
Sbjct: 86 tgccgcaggtgaagcagcgaaccgggatgatcatcttcgatccgccgccgccgccgctgg 27
>gb|CB881346.1|CB881346 HM09I11w HM Hordeum vulgare subsp. vulgare cDNA clone HM09I11
3-PRIME, mRNA sequence
Length = 558
Score = 256 bits (129), Expect = 7e-067
Identities = 213/240 (88%), Gaps = 2/240 (0%)
Strand = Plus / Plus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 289 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 348
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | |||||||||||| | ||| ||| ||||||||||||||||
Sbjct: 349 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 408
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 409 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 468
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg--ccgccgccgccgcagctgg 531
||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| |||||
Sbjct: 469 tgccgcaggtgaagcagcgaaccgggatgatcatcttcgatccgccgccgccgccgctgg 528
>gb|CA027679.1|CA027679 HZ59K23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ59K23
5-PRIME, mRNA sequence
Length = 265
Score = 252 bits (127), Expect = 1e-065
Identities = 211/238 (88%), Gaps = 2/238 (0%)
Strand = Plus / Minus
Query: 296 cttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacatgg 355
|||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct: 265 cttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacatgg 206
Query: 356 gtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatcccct 415
||||||||||| || | |||||||||||| | ||| ||| |||||||||||||||||
Sbjct: 205 gtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccccc 146
Query: 416 tccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttg 475
|| | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||||
Sbjct: 145 tcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcaccttg 86
Query: 476 ccgcaggtgaagcagcgcaccggtatgatcatcttcg--ccgccgccgccgcagctgg 531
||||||||||||||||| ||||| ||||||||||||| ||||||||||||| |||||
Sbjct: 85 ccgcaggtgaagcagcgaaccgggatgatcatcttcgatccgccgccgccgccgctgg 28
>gb|BQ763913.1|BQ763913 EBro03_SQ005_B22_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_B22 5', mRNA sequence
Length = 500
Score = 246 bits (124), Expect = 7e-064
Identities = 196/220 (89%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 242 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 183
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | |||||||||||| | ||| ||| ||||||||||||||||
Sbjct: 182 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 123
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 122 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 63
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcgc 513
||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 62 tgccgcaggtgaagcagcgaaccgggatgatcatcttcgc 23
>gb|BG344056.2|BG344056 HVSMEg0007I06f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0007I06f, mRNA sequence
Length = 524
Score = 244 bits (123), Expect = 3e-063
Identities = 195/219 (89%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 266 aacttgtctccgtcttctccagggtgttgtagttgagcaacttctcgataaggtcaacat 207
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | |||||||||||| | ||| ||| ||||||||||||||||
Sbjct: 206 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 147
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 146 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 87
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
||||||||||||||||||| ||||| |||||||||||||
Sbjct: 86 tgccgcaggtgaagcagcgaaccgggatgatcatcttcg 48
>gb|BM376551.2|BM376551 EBem05_SQ002_I19_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_I19 5', mRNA sequence
Length = 522
Score = 244 bits (123), Expect = 3e-063
Identities = 195/219 (89%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 228 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 169
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | |||||||||||| | ||| ||| ||||||||||||||||
Sbjct: 168 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 109
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 108 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 49
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
||||||||||||||||||| ||||| |||||||||||||
Sbjct: 48 tgccgcaggtgaagcagcgaaccgggatgatcatcttcg 10
>gb|CA022127.1|CA022127 HZ42D22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42D22
5-PRIME, mRNA sequence
Length = 502
Score = 244 bits (123), Expect = 3e-063
Identities = 195/219 (89%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 230 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 171
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | |||||||||||| | ||| ||| ||||||||||||||||
Sbjct: 170 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 111
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 110 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 51
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
||||||||||||||||||| ||||| |||||||||||||
Sbjct: 50 tgccgcaggtgaagcagcgaaccgggatgatcatcttcg 12
>gb|CV054719.1|CV054719 BNEL112e5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL112e5 5' similar to DNA-directed
RNA polymerase II, putative, mRNA sequence
Length = 525
Score = 244 bits (123), Expect = 3e-063
Identities = 195/219 (89%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 238 aacttgtctccgtcttctccagggtgttgtagttgagcaacttctcgataaggtcaacat 179
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | |||||||||||| | ||| ||| ||||||||||||||||
Sbjct: 178 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 119
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 118 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 59
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
||||||||||||||||||| ||||| |||||||||||||
Sbjct: 58 tgccgcaggtgaagcagcgaaccgggatgatcatcttcg 20
>gb|BG301284.2|BG301284 HVSMEb0020H09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020H09f, mRNA sequence
Length = 573
Score = 242 bits (122), Expect = 1e-062
Identities = 194/218 (88%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 264 aacttgtctccgtcttctccagggtgttgtagttgagcaacttctcgataaggtcaacat 205
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | |||||||||||| | ||| ||| ||||||||||||||||
Sbjct: 204 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 145
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 144 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 85
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttc 511
||||||||||||||||||| ||||| ||||||||||||
Sbjct: 84 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 47
>gb|AL506323.1|AL506323 AL506323 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02L23T 5',
mRNA sequence
Length = 547
Score = 236 bits (119), Expect = 7e-061
Identities = 194/219 (88%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 292 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 233
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | ||||||||| || | ||| ||| ||||| ||||||||||
Sbjct: 232 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 173
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 172 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 113
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
||||||||||||||||||| ||||| |||||||||||||
Sbjct: 112 tgccgcaggtgaagcagcgaaccgggatgatcatcttcg 74
>gb|BE601861.1|BE601861 HVSMEh0099M19f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099M19f, mRNA sequence
Length = 524
Score = 236 bits (119), Expect = 7e-061
Identities = 194/219 (88%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 238 aacttgtctccgtcttctccagggtgttgtagttgagcaacttctcgataaggtcaacat 179
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | |||||||||||| | ||| ||| ||||||||||||||||
Sbjct: 178 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 119
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 118 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 59
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 58 tcccgcaggtgaagcagcgaaccgggatgatcatcttcg 20
>gb|BF257863.2|BF257863 HVSMEf0014B05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0014B05f, mRNA sequence
Length = 571
Score = 236 bits (119), Expect = 7e-061
Identities = 194/219 (88%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 304 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 245
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | ||||||||| || | ||| ||| ||||| ||||||||||
Sbjct: 244 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 185
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 184 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 125
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
||||||||||||||||||| ||||| |||||||||||||
Sbjct: 124 tgccgcaggtgaagcagcgaaccgggatgatcatcttcg 86
>gb|BQ460746.1|BQ460746 HA06A19r HA Hordeum vulgare subsp. vulgare cDNA clone HA06A19
5-PRIME, mRNA sequence
Length = 537
Score = 236 bits (119), Expect = 7e-061
Identities = 194/219 (88%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 322 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 263
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | ||||||||| || | ||| ||| ||||| ||||||||||
Sbjct: 262 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 203
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 202 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 143
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
||||||||||||||||||| ||||| |||||||||||||
Sbjct: 142 tgccgcaggtgaagcagcgaaccgggatgatcatcttcg 104
>gb|BQ470436.1|BQ470436 HX02P15r HX Hordeum vulgare subsp. vulgare cDNA clone HX02P15
5-PRIME, mRNA sequence
Length = 598
Score = 236 bits (119), Expect = 7e-061
Identities = 194/219 (88%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 352 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 293
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | ||||||||| || | ||| ||| ||||| ||||||||||
Sbjct: 292 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 233
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 232 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 173
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
||||||||||||||||||| ||||| |||||||||||||
Sbjct: 172 tgccgcaggtgaagcagcgaaccgggatgatcatcttcg 134
>gb|BQ470789.1|BQ470789 HX04A15r HX Hordeum vulgare subsp. vulgare cDNA clone HX04A15
5-PRIME, mRNA sequence
Length = 530
Score = 236 bits (119), Expect = 7e-061
Identities = 194/219 (88%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 280 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 221
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | ||||||||| || | ||| ||| ||||| ||||||||||
Sbjct: 220 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 161
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 160 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 101
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
||||||||||||||||||| ||||| |||||||||||||
Sbjct: 100 tgccgcaggtgaagcagcgaaccgggatgatcatcttcg 62
>gb|BQ665534.1|BQ665534 HX04A15u HX Hordeum vulgare subsp. vulgare cDNA clone HX04A15
3-PRIME, mRNA sequence
Length = 473
Score = 236 bits (119), Expect = 7e-061
Identities = 194/219 (88%)
Strand = Plus / Plus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 251 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 310
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | ||||||||| || | ||| ||| ||||| ||||||||||
Sbjct: 311 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 370
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 371 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 430
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
||||||||||||||||||| ||||| |||||||||||||
Sbjct: 431 tgccgcaggtgaagcagcgaaccgggatgatcatcttcg 469
>gb|BM375074.2|BM375074 EBem06_SQ002_E09_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_E09 5', mRNA sequence
Length = 494
Score = 236 bits (119), Expect = 7e-061
Identities = 191/215 (88%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 215 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 156
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | |||||||||||| | ||| ||| ||||||||||||||||
Sbjct: 155 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 96
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 95 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 36
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatc 508
||||||||||||||||||| ||||| |||||||||
Sbjct: 35 tgccgcaggtgaagcagcgaaccgggatgatcatc 1
>gb|BQ768186.1|BQ768186 EBro08_SQ010_M23_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_M23 5', mRNA sequence
Length = 631
Score = 236 bits (119), Expect = 7e-061
Identities = 194/219 (88%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 286 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 227
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | ||||||||| || | ||| ||| ||||| ||||||||||
Sbjct: 226 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 167
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 166 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 107
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
||||||||||||||||||| ||||| |||||||||||||
Sbjct: 106 tgccgcaggtgaagcagcgaaccgggatgatcatcttcg 68
>gb|BU983354.1|BU983354 HA29H02r HA Hordeum vulgare subsp. vulgare cDNA clone HA29H02
5-PRIME, mRNA sequence
Length = 531
Score = 236 bits (119), Expect = 7e-061
Identities = 194/219 (88%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 308 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 249
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | ||||||||| || | ||| ||| ||||| ||||||||||
Sbjct: 248 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 189
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 188 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 129
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
||||||||||||||||||| ||||| |||||||||||||
Sbjct: 128 tgccgcaggtgaagcagcgaaccgggatgatcatcttcg 90
>gb|BU986773.1|BU986773 HF12N18r HF Hordeum vulgare subsp. vulgare cDNA clone HF12N18
5-PRIME, mRNA sequence
Length = 540
Score = 236 bits (119), Expect = 7e-061
Identities = 194/219 (88%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 261 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 202
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | ||||||||| || | ||| ||| ||||| ||||||||||
Sbjct: 201 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 142
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 141 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 82
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
||||||||||||||||||| ||||| |||||||||||||
Sbjct: 81 tgccgcaggtgaagcagcgaaccgggatgatcatcttcg 43
>gb|CK122930.1|CK122930 BES1824101e16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E161 5-PRIME, mRNA sequence
Length = 724
Score = 236 bits (119), Expect = 7e-061
Identities = 194/219 (88%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 326 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 267
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | ||||||||| || | ||| ||| ||||| ||||||||||
Sbjct: 266 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 207
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 206 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 147
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
||||||||||||||||||| ||||| |||||||||||||
Sbjct: 146 tgccgcaggtgaagcagcgaaccgggatgatcatcttcg 108
>gb|BQ757114.1|BQ757114 EBem10_SQ002_O01_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ002_O01 5', mRNA sequence
Length = 349
Score = 232 bits (117), Expect = 1e-059
Identities = 183/205 (89%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 209 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 150
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | |||||||||||| ||||| ||| ||||||||||||||||
Sbjct: 149 gggtcatgagcatacggcggcagcagtagcgaaacaagcccaaggcatccagagcatccc 90
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 89 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 30
Query: 474 tgccgcaggtgaagcagcgcaccgg 498
||||||||||||||||||| |||||
Sbjct: 29 tgccgcaggtgaagcagcgaaccgg 5
>gb|AL509745.1|AL509745 AL509745 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02L23u 3',
mRNA sequence
Length = 563
Score = 228 bits (115), Expect = 2e-058
Identities = 193/219 (88%)
Strand = Plus / Plus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 298 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 357
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | ||||||||| || | ||| ||| ||||| ||||||||||
Sbjct: 358 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 417
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 418 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 477
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
|||||||||||||||| || ||||| |||||||||||||
Sbjct: 478 tgccgcaggtgaagcaacgaaccgggatgatcatcttcg 516
>gb|BG415007.2|BG415007 HVSMEk0004K11f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0004K11f, mRNA sequence
Length = 630
Score = 228 bits (115), Expect = 2e-058
Identities = 193/219 (88%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 301 aacttgtctctgtcttttccagggtgttgtagttgagcaacttctcgatgaggtcaacat 242
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | ||||||||| || | ||| ||| ||||| ||||||||||
Sbjct: 241 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 182
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 181 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 122
Query: 474 tgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
||||||||||||||||||| ||||| |||||||||||||
Sbjct: 121 tgccgcaggtgaagcagcgaaccgggatgatcatcttcg 83
>gb|BM368232.2|BM368232 EBed01_SQ002_I20_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ002_I20 5', mRNA sequence
Length = 545
Score = 220 bits (111), Expect = 4e-056
Identities = 177/199 (88%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 199 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 140
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | |||||||||||| | ||| ||| ||||||||||||||||
Sbjct: 139 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 80
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
| || | ||| || |||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 79 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 20
Query: 474 tgccgcaggtgaagcagcg 492
|||||||||||||||||||
Sbjct: 19 tgccgcaggtgaagcagcg 1
>gb|BM444749.1|BM444749 EBem09_SQ006_F19_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ006_F19 5', mRNA sequence
Length = 518
Score = 165 bits (83), Expect = 2e-039
Identities = 149/171 (87%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 171 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 112
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | ||||||||| || | ||| ||| ||||| ||||||||||
Sbjct: 111 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 52
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcc 464
| || | ||| || |||||||| || ||||||||| |||||||||||||||
Sbjct: 51 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcc 1
>gb|BG344830.2|BG344830 HVSMEg0016E15f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016E15f, mRNA sequence
Length = 427
Score = 139 bits (70), Expect = 1e-031
Identities = 138/161 (85%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 161 aacttgtctccgtcttctccagggtgttgtagttgagcaacttctcgataaggtcaacat 102
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | |||||||||||| | ||| ||| || ||||||||||||
Sbjct: 101 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggccaccagagcatccc 42
Query: 414 cttccgagtagtcggcctggaggaggtcgaggtagaggtcc 454
| || | ||| || |||||||| || ||||||||| |||||
Sbjct: 41 cntcggtgtaatcagcctggagaagatcgaggtagtggtcc 1
>gb|AJ462715.1|AJ462715 AJ462715 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200073B09F1, mRNA sequence
Length = 240
Score = 137 bits (69), Expect = 5e-031
Identities = 108/121 (89%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 140 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 81
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | |||||||||||| | ||| ||| ||||||||||||||||
Sbjct: 80 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 21
Query: 414 c 414
|
Sbjct: 20 c 20
>gb|BQ658040.1|BQ658040 HA06A19u HA Hordeum vulgare subsp. vulgare cDNA clone HA06A19
3-PRIME, mRNA sequence
Length = 471
Score = 129 bits (65), Expect = 1e-028
Identities = 107/121 (88%)
Strand = Plus / Plus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 351 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 410
Query: 354 gggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatccc 413
||||||||||||| || | ||||||||| || | ||| ||| ||||| ||||||||||
Sbjct: 411 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 470
Query: 414 c 414
|
Sbjct: 471 c 471
>gb|BM444395.1|BM444395 EBem09_SQ005_B04_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_B04 5', mRNA sequence
Length = 533
Score = 127 bits (64), Expect = 5e-028
Identities = 146/172 (84%), Gaps = 1/172 (0%)
Strand = Plus / Minus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaa-tgaggtcaaca 352
|||||||||| ||||||||||| |||||||||||||||||||| | |||||||||||
Sbjct: 172 aacttgtctctgtcttctccagggtgttgtagttgagcaacttgtagggtgaggtcaaca 113
Query: 353 tgggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatcc 412
|||||||||||||| || | ||||||||| || | ||| ||| ||||| |||||||||
Sbjct: 112 tgggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatcc 53
Query: 413 ccttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcc 464
|| || | ||| || |||||||| || ||||||||| |||||||||||||||
Sbjct: 52 ccctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcc 1
>gb|BU987611.1|BU987611 HF15E01r HF Hordeum vulgare subsp. vulgare cDNA clone HF15E01
5-PRIME, mRNA sequence
Length = 441
Score = 127 bits (64), Expect = 5e-028
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 294 aacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaacat 353
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 351 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 410
Query: 354 gggtcatgagcattcgcctgcagcagta 381
||||||||||||| || | |||||||||
Sbjct: 411 gggtcatgagcatacggcggcagcagta 438
>gb|BU983331.1|BU983331 HA29G02r HA Hordeum vulgare subsp. vulgare cDNA clone HA29G02
5-PRIME, mRNA sequence
Length = 190
Score = 125 bits (63), Expect = 2e-027
Identities = 102/115 (88%)
Strand = Plus / Minus
Query: 398 gcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtcccac 457
||||| ||||||||||| || | ||| || ||||||| || ||||||||| ||||||||
Sbjct: 186 gcatcaagagcatccccctcggtgtaatcagcctggataagatcgaggtagtggtcccac 127
Query: 458 ttgttcccaatcaccttgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
|||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 126 ttgttcccgatcaccttgccgcaggtgaagcagcgaaccgggatgatcatcttcg 72
>gb|BI948230.1|BI948230 HVSMEl0008L03f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0008L03f, mRNA sequence
Length = 561
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 504 tcatcttcgccgccgccgccgc 525
||||||||||||||||||||||
Sbjct: 98 tcatcttcgccgccgccgccgc 119
>gb|BM371243.2|BM371243 EBro04_SQ003_P12_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_P12 5', mRNA sequence
Length = 491
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 511 cgccgccgccgccgcagctgga 532
||||||||||||||||||||||
Sbjct: 302 cgccgccgccgccgcagctgga 281
>gb|BF254937.2|BF254937 HVSMEf0005H13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005H13f, mRNA sequence
Length = 837
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 506 atcttcgccgccgccgccgc 525
||||||||||||||||||||
Sbjct: 52 atcttcgccgccgccgccgc 33
>gb|BF256038.2|BF256038 HVSMEf0008I24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0008I24f, mRNA sequence
Length = 839
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 527 gctggaacccggagctgggg 546
||||||||||||||||||||
Sbjct: 638 gctggaacccggagctgggg 657
>gb|BI951621.1|BI951621 HVSMEm0001K18f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0001K18f, mRNA sequence
Length = 838
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 506 atcttcgccgccgccgccgc 525
||||||||||||||||||||
Sbjct: 91 atcttcgccgccgccgccgc 72
>gb|BF261410.2|BF261410 HV_CEa0001C22f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0001C22f, mRNA sequence
Length = 613
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 506 atcttcgccgccgccgccgc 525
||||||||||||||||||||
Sbjct: 94 atcttcgccgccgccgccgc 75
>gb|AW983286.3|AW983286 HVSMEg0010B10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0010B10f, mRNA sequence
Length = 816
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 506 atcttcgccgccgccgccgc 525
||||||||||||||||||||
Sbjct: 114 atcttcgccgccgccgccgc 95
>gb|BG345158.2|BG345158 HVSMEg0018O18f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018O18f, mRNA sequence
Length = 865
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 506 atcttcgccgccgccgccgc 525
||||||||||||||||||||
Sbjct: 19 atcttcgccgccgccgccgc 38
>gb|BQ460909.1|BQ460909 HE01N20r HE Hordeum vulgare subsp. vulgare cDNA clone HE01N20
5-PRIME, mRNA sequence
Length = 386
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 506 atcttcgccgccgccgccgc 525
||||||||||||||||||||
Sbjct: 52 atcttcgccgccgccgccgc 33
>gb|BQ464834.1|BQ464834 HU01M10T HU Hordeum vulgare subsp. vulgare cDNA clone HU01M10
5-PRIME, mRNA sequence
Length = 589
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 506 atcttcgccgccgccgccgc 525
||||||||||||||||||||
Sbjct: 129 atcttcgccgccgccgccgc 110
>gb|BQ464860.1|BQ464860 HU01O14T HU Hordeum vulgare subsp. vulgare cDNA clone HU01O14
5-PRIME, mRNA sequence
Length = 587
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 506 atcttcgccgccgccgccgc 525
||||||||||||||||||||
Sbjct: 129 atcttcgccgccgccgccgc 110
>gb|BQ470732.1|BQ470732 HX03N22r HX Hordeum vulgare subsp. vulgare cDNA clone HX03N22
5-PRIME, mRNA sequence
Length = 552
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 506 atcttcgccgccgccgccgc 525
||||||||||||||||||||
Sbjct: 126 atcttcgccgccgccgccgc 107
>gb|BQ471353.1|BQ471353 HV02C24r HV Hordeum vulgare subsp. vulgare cDNA clone HV02C24
5-PRIME, mRNA sequence
Length = 597
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 506 atcttcgccgccgccgccgc 525
||||||||||||||||||||
Sbjct: 137 atcttcgccgccgccgccgc 118
>gb|BI779848.2|BI779848 EBem07_SQ001_D05_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ001_D05 5', mRNA sequence
Length = 457
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 506 atcttcgccgccgccgccgc 525
||||||||||||||||||||
Sbjct: 111 atcttcgccgccgccgccgc 92
>gb|BQ761565.1|BQ761565 EBem10_SQ001_J02_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_J02 5', mRNA sequence
Length = 367
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 506 atcttcgccgccgccgccgc 525
||||||||||||||||||||
Sbjct: 109 atcttcgccgccgccgccgc 90
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 135,190
Number of Sequences: 312970
Number of extensions: 135190
Number of successful extensions: 63107
Number of sequences better than 0.5: 85
Number of HSP's better than 0.5 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62747
Number of HSP's gapped (non-prelim): 229
length of query: 608
length of database: 175,134,539
effective HSP length: 19
effective length of query: 589
effective length of database: 169,188,109
effective search space: 99651796201
effective search space used: 99651796201
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)