BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437714.2.1
(1649 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM375323.2|BM375323 EBem06_SQ002_P23_R embryo, 21 DPA, n... 371 e-101
gb|BU979825.1|BU979825 HA17H19r HA Hordeum vulgare subsp. v... 331 4e-089
gb|AV836699.1|AV836699 AV836699 K. Sato unpublished cDNA li... 218 4e-055
gb|BU990022.1|BU990022 HF23L15r HF Hordeum vulgare subsp. v... 163 2e-038
gb|BJ462905.1|BJ462905 BJ462905 K. Sato unpublished cDNA li... 92 7e-017
gb|BE215906.2|BE215906 HV_CEb0008M23f Hordeum vulgare seedl... 90 3e-016
gb|BF263242.2|BF263242 HV_CEa0006D16f Hordeum vulgare seedl... 80 3e-013
gb|BF255625.2|BF255625 HVSMEf0007F20f Hordeum vulgare seedl... 64 2e-008
gb|BG300180.2|BG300180 HVSMEb0010M14f Hordeum vulgare seedl... 64 2e-008
gb|BQ462615.1|BQ462615 HI01H17T HI Hordeum vulgare subsp. v... 64 2e-008
gb|BQ660205.1|BQ660205 HI01H17w HI Hordeum vulgare subsp. v... 64 2e-008
gb|BU976968.1|BU976968 HA10J24r HA Hordeum vulgare subsp. v... 64 2e-008
gb|BU996535.1|BU996535 HM13O21r HM Hordeum vulgare subsp. v... 64 2e-008
gb|CA020283.1|CA020283 HV14N17r HV Hordeum vulgare subsp. v... 64 2e-008
gb|AV837108.1|AV837108 AV837108 K. Sato unpublished cDNA li... 62 6e-008
gb|AV928198.1|AV928198 AV928198 K. Sato unpublished cDNA li... 62 6e-008
gb|AU252274.1|AU252274 AU252274 salt-stressed barley root c... 60 2e-007
gb|AU252281.1|AU252281 AU252281 salt-stressed barley root c... 60 2e-007
gb|BU995308.1|BU995308 HM09N12r HM Hordeum vulgare subsp. v... 58 1e-006
gb|BI950071.1|BI950071 HVSMEl0018F12f Hordeum vulgare spike... 56 4e-006
gb|BQ464898.1|BQ464898 HU02B07r HU Hordeum vulgare subsp. v... 56 4e-006
gb|BQ466575.1|BQ466575 HT02O23r HT Hordeum vulgare subsp. v... 56 4e-006
gb|BM370694.2|BM370694 EBro04_SQ001_N16_R root, 3 week, sal... 56 4e-006
gb|BU967708.1|BU967708 HB05C13r BC Hordeum vulgare subsp. v... 54 2e-005
gb|CA014046.1|CA014046 HT10D18r HT Hordeum vulgare subsp. v... 54 2e-005
emb|AJ234733.1|HVU234733 Hordeum vulgare genomic DNA fragme... 54 2e-005
gb|BM816713.1|BM816713 HC114E03_SK.ab1 HC Hordeum vulgare s... 52 6e-005
gb|BJ463997.1|BJ463997 BJ463997 K. Sato unpublished cDNA li... 52 6e-005
gb|BQ756172.1|BQ756172 EBem05_SQ002_G10_R embryo, 14 DPA, n... 52 6e-005
gb|CV057992.1|CV057992 BNEL33b6 Barley EST endosperm librar... 52 6e-005
gb|CV059608.1|CV059608 BNEL4A2 Barley EST endosperm library... 52 6e-005
gb|AV837001.1|AV837001 AV837001 K. Sato unpublished cDNA li... 50 2e-004
gb|BQ661898.1|BQ661898 HP01M02w HP Hordeum vulgare subsp. v... 50 2e-004
gb|BQ661900.1|BQ661900 HP01M04w HP Hordeum vulgare subsp. v... 50 2e-004
gb|BU995787.1|BU995787 HM11F21r HM Hordeum vulgare subsp. v... 50 2e-004
gb|CA011468.1|CA011468 HT05J08u HT Hordeum vulgare subsp. v... 50 2e-004
gb|CB879472.1|CB879472 HP02G07w HP Hordeum vulgare subsp. v... 50 2e-004
gb|CB881943.1|CB881943 HM11F21w HM Hordeum vulgare subsp. v... 50 2e-004
gb|BQ768749.1|BQ768749 EBro08_SQ012_G15_R root, 3 week, dro... 48 0.001
gb|BU983256.1|BU983256 HA29B10r HA Hordeum vulgare subsp. v... 48 0.001
gb|BI959357.1|BI959357 HVSMEn0019F17f Hordeum vulgare rachi... 46 0.004
gb|BM816134.1|BM816134 HC05B11_T3.ab1 HC Hordeum vulgare su... 46 0.004
gb|BM816135.1|BM816135 HC05B12_T3.ab1 HC Hordeum vulgare su... 46 0.004
gb|BJ450289.1|BJ450289 BJ450289 K. Sato unpublished cDNA li... 46 0.004
gb|BJ457712.1|BJ457712 BJ457712 K. Sato unpublished cDNA li... 46 0.004
gb|BJ471569.1|BJ471569 BJ471569 K. Sato unpublished cDNA li... 46 0.004
gb|BM373447.2|BM373447 EBma04_SQ004_H16_R maternal, 10 DPA,... 46 0.004
gb|BM373450.2|BM373450 EBma04_SQ004_H19_R maternal, 10 DPA,... 46 0.004
gb|BM370983.2|BM370983 EBro04_SQ003_C04_R root, 3 week, sal... 46 0.004
gb|BU994831.1|BU994831 HM08F14r HM Hordeum vulgare subsp. v... 46 0.004
gb|BU995432.1|BU995432 HM10D21r HM Hordeum vulgare subsp. v... 46 0.004
gb|CA014738.1|CA014738 HT12D11r HT Hordeum vulgare subsp. v... 46 0.004
gb|CB880958.1|CB880958 HM08F14w HM Hordeum vulgare subsp. v... 46 0.004
gb|CB881559.1|CB881559 HM10C22w HM Hordeum vulgare subsp. v... 46 0.004
gb|AV833891.1|AV833891 AV833891 K. Sato unpublished cDNA li... 44 0.015
gb|BF623192.2|BF623192 HVSMEa0015C06f Hordeum vulgare seedl... 44 0.015
gb|BI951840.1|BI951840 HVSMEm0003C19f Hordeum vulgare green... 44 0.015
gb|BI959662.1|BI959662 HVSMEn0020K15f Hordeum vulgare rachi... 44 0.015
gb|BQ759758.1|BQ759758 EBpi05_SQ004_F10_R pistil, 8 DPA, no... 44 0.015
gb|BU980874.1|BU980874 HA21P04r HA Hordeum vulgare subsp. v... 44 0.015
gb|CA023853.1|CA023853 HZ47J17r HZ Hordeum vulgare subsp. v... 44 0.015
gb|AL508203.1|AL508203 AL508203 Hordeum vulgare Barke devel... 42 0.058
gb|BF629141.2|BF629141 HVSMEb0010B01f Hordeum vulgare seedl... 42 0.058
gb|BF618611.2|BF618611 HVSMEc0006K17f Hordeum vulgare seedl... 42 0.058
gb|BF620215.2|BF620215 HVSMEc0019A20f Hordeum vulgare seedl... 42 0.058
gb|BF256991.2|BF256991 HVSMEf0011J01f Hordeum vulgare seedl... 42 0.058
gb|BI948692.1|BI948692 HVSMEl0010I13f Hordeum vulgare spike... 42 0.058
gb|BI960054.1|BI960054 HVSMEn0023A08f Hordeum vulgare rachi... 42 0.058
gb|AV917399.1|AV917399 AV917399 K. Sato unpublished cDNA li... 42 0.058
gb|BQ460088.1|BQ460088 HA07E09r HA Hordeum vulgare subsp. v... 42 0.058
gb|BM371055.2|BM371055 EBro04_SQ003_F15_R root, 3 week, sal... 42 0.058
gb|BQ764974.1|BQ764974 EBca01_SQ005_M12_R carpel, pre-anthe... 42 0.058
gb|BQ765808.1|BQ765808 EBro03_SQ008_A09_R root, 3 week, wat... 42 0.058
gb|BU987697.1|BU987697 HF15I03r HF Hordeum vulgare subsp. v... 42 0.058
gb|CA023245.1|CA023245 HZ45K14r HZ Hordeum vulgare subsp. v... 42 0.058
gb|CB877039.1|CB877039 HP03F15T HP Hordeum vulgare subsp. v... 42 0.058
gb|AV836461.1|AV836461 AV836461 K. Sato unpublished cDNA li... 40 0.23
gb|BF267782.2|BF267782 HV_CEa0018O01f Hordeum vulgare seedl... 40 0.23
gb|AV925350.1|AV925350 AV925350 K. Sato unpublished cDNA li... 40 0.23
gb|AV930503.1|AV930503 AV930503 K. Sato unpublished cDNA li... 40 0.23
gb|AV934465.1|AV934465 AV934465 K. Sato unpublished cDNA li... 40 0.23
gb|BJ469353.1|BJ469353 BJ469353 K. Sato unpublished cDNA li... 40 0.23
gb|BJ470377.1|BJ470377 BJ470377 K. Sato unpublished cDNA li... 40 0.23
gb|BM443542.2|BM443542 EBro02_SQ005_J14_R root, 3 week, hyd... 40 0.23
gb|BU971659.1|BU971659 HB19E12r BC Hordeum vulgare subsp. v... 40 0.23
gb|BJ547039.1|BJ547039 BJ547039 K. Sato unpublished cDNA li... 40 0.23
gb|BJ547296.1|BJ547296 BJ547296 K. Sato unpublished cDNA li... 40 0.23
gb|BJ547815.1|BJ547815 BJ547815 K. Sato unpublished cDNA li... 40 0.23
gb|CB875060.1|CB875060 HX07C18w HX Hordeum vulgare subsp. v... 40 0.23
gb|CB875249.1|CB875249 HX07L15w HX Hordeum vulgare subsp. v... 40 0.23
emb|AJ234898.1|HVU234898 Hordeum vulgare genomic DNA fragme... 40 0.23
>gb|BM375323.2|BM375323 EBem06_SQ002_P23_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_P23 5', mRNA sequence
Length = 539
Score = 371 bits (187), Expect = e-101
Identities = 340/391 (86%)
Strand = Plus / Minus
Query: 592 agggtctcgacgacgtcgctcatgagcggcctggcctttgggttctggctcaggcagtag 651
|||||||| || ||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct: 391 agggtctccaccacgtcgctcatcagcggcctcgccttggggttctggctcaggcagtag 332
Query: 652 aacgcgaggctgcaggacttgtgagcggctctggccgagtactgcccctccagcctcggg 711
|||| |||||||| | |||||||| || | | ||||||||||||| ||||||||||||
Sbjct: 331 tacgccaggctgcaagctttgtgagccgcccggaccgagtactgcccttccagcctcggg 272
Query: 712 tcgatgatctggaggagcctcctcttgtcgttgagcttcgggagcgcccagtccaccagg 771
|||||||||||||| |||||||||||||| || ||||| ||| |||||||||||||||
Sbjct: 271 tcgatgatctggagaagcctcctcttgtcattcagcttggggcaggcccagtccaccagg 212
Query: 772 ctctgctccctgctgggccgcgacttgtcgatcgacttgcgccccgtcaggagctccagc 831
|| ||||||||||||| ||| |||||||| || ||||||||||||||||| ||||||||
Sbjct: 211 ctgtgctccctgctggaccgtgacttgtcaatggacttgcgccccgtcagcagctccaga 152
Query: 832 aggaccacgccgaagctgtacacgtcactccgagcagtcaagtgaccggtcatcacatat 891
||||| ||||| |||||||| || ||||| | |||||||||||| |||||||||||||||
Sbjct: 151 aggacgacgccaaagctgtagacatcacttctagcagtcaagtggccggtcatcacatat 92
Query: 892 tcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgcgtctgatcacct 951
||||||||||||||||| || ||||||||||| | ||||| ||||| |||| |||||||
Sbjct: 91 tcaggggcagcataaccatatgttcccatcactctcgtcgatacatgggtctcatcacct 32
Query: 952 tcagggccatcttttgcgaggccaaagtcag 982
|| || ||| |||| || || || |||||||
Sbjct: 31 tctggtccagctttcgccagcccgaagtcag 1
>gb|BU979825.1|BU979825 HA17H19r HA Hordeum vulgare subsp. vulgare cDNA clone HA17H19
5-PRIME, mRNA sequence
Length = 435
Score = 331 bits (167), Expect = 4e-089
Identities = 283/322 (87%)
Strand = Plus / Minus
Query: 1217 atccgatcaacttcaccaaatttggatgcctcaactgccccaggcagttaacctcggtaa 1276
|||| |||||||| || | |||||||||||| | ||||| |||| | |||||||| ||||
Sbjct: 435 atccaatcaactttactagatttggatgccttagctgccncaggaaattaacctcagtaa 376
Query: 1277 gccattctctgtgcccttgatgtccatctttgttgagcaccttgactgcaacaggcagtg 1336
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 375 gccattctctgtgtccttgatgtccatctttgttgagcaccttgacagcaacaggcagcg 316
Query: 1337 acttcagcccaaccctgacattttcatctatgtaacccttgtaaacggtcccaaatcctc 1396
| || || ||||||| |||||| || ||||| |||||||||||||| ||||| || ||||
Sbjct: 315 atttgaggccaacccggacattctcgtctatataacccttgtaaacagtcccgaagcctc 256
Query: 1397 cttcgccaagaacataatcaacacggaagctctttgtgattgtctctagctcaaacaatg 1456
|||| |||||||||||||| |||| |||||||||||||| || || |||||||||||||
Sbjct: 255 cttcaccaagaacataatcggcacgaaagctctttgtgatcgtttcaagctcaaacaatg 196
Query: 1457 tgaaggcaatcacatcgttgtatatggaaatgttcttggcatcttcaactttcctaggtg 1516
||||||||||||||| ||||||||||||||||| ||||| |||||||| ||| | ||| |
Sbjct: 195 tgaaggcaatcacattgttgtatatggaaatgtccttggtatcttcaattttgccaggcg 136
Query: 1517 tggaagggtcacttatatctga 1538
| ||||| ||||||||||||||
Sbjct: 135 ttgaaggatcacttatatctga 114
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1613 gcgcgtgcgcagcaacgacggcattct 1639
||||||||||||| |||||||||||||
Sbjct: 39 gcgcgtgcgcagcgacgacggcattct 13
>gb|AV836699.1|AV836699 AV836699 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum vulgare
subsp. vulgare cDNA clone basd26e24, mRNA sequence
Length = 409
Score = 218 bits (110), Expect = 4e-055
Identities = 171/192 (89%)
Strand = Plus / Minus
Query: 1375 ttgtaaacggtcccaaatcctccttcgccaagaacataatcaacacggaagctctttgtg 1434
|||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 409 ttgtaaacagtcccaaatcctccttcgccaagaacataatcggcacgaaagctctttgtg 350
Query: 1435 attgtctctagctcaaacaatgtgaaggcaatcacatcgttgtatatggaaatgttcttg 1494
|| || || ||||||||||||||||| |||||||||| ||||||||| ||||||||||||
Sbjct: 349 atagtttcaagctcaaacaatgtgaatgcaatcacattgttgtatatcgaaatgttcttg 290
Query: 1495 gcatcttcaactttcctaggtgtggaagggtcacttatatctgatgacatgcaggtgtgc 1554
|||||||| | |||| ||||||| | ||||||||||| |||| |||| || |||||||
Sbjct: 289 gcatcttcgattttcttaggtgttggagggtcacttacatctnatgaggngcgggtgtgc 230
Query: 1555 ttcctatctgca 1566
||||||||||||
Sbjct: 229 ttcctatctgca 218
>gb|BU990022.1|BU990022 HF23L15r HF Hordeum vulgare subsp. vulgare cDNA clone HF23L15
5-PRIME, mRNA sequence
Length = 632
Score = 163 bits (82), Expect = 2e-038
Identities = 140/158 (88%), Gaps = 1/158 (0%)
Strand = Plus / Minus
Query: 592 agggtctcgacgacgtcgctcatgagcggcctggcctttgggttctggctcaggcagtag 651
|||||||| || |||| |||||| |||||||| ||||| |||||||||||||||||||||
Sbjct: 162 agggtctccaccacgt-gctcatcagcggcctcgccttggggttctggctcaggcagtag 104
Query: 652 aacgcgaggctgcaggacttgtgagcggctctggccgagtactgcccctccagcctcggg 711
|||| |||||||| | ||||||||| || | | ||||||||||||| ||||||||||||
Sbjct: 103 tacgccaggctgcaagccttgtgagccgcccggaccgagtactgcccttccagcctcggg 44
Query: 712 tcgatgatctggaggagcctcctcttgtcgttgagctt 749
|||||||||||||| |||||||||||||| || |||||
Sbjct: 43 tcgatgatctggagaagcctcctcttgtcattcagctt 6
Score = 42.1 bits (21), Expect = 0.058
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 334 agcagcagcagcagcatgcagatca 358
||||||||||||||||||| |||||
Sbjct: 506 agcagcagcagcagcatgcggatca 482
>gb|BJ462905.1|BJ462905 BJ462905 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24n16 5', mRNA sequence
Length = 634
Score = 91.7 bits (46), Expect = 7e-017
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 868 gtcaagtgaccggtcatcacatattcaggggcagcataaccgtaggttcccatcacccgt 927
|||| |||||| ||||| ||||| ||||| || ||||| ||||| |||||||| |||||
Sbjct: 412 gtcaggtgacctgtcatgacatactcaggagctgcatatccgtatgttcccatgacccga 353
Query: 928 gtcgacacatgcgtctgatcaccttcagggccatcttttgcgaggccaaagtcagacagt 987
|| || ||||| |||| |||||| ||||||||||||||||| || ||||| ||||| |||
Sbjct: 352 gtggatacatgtgtcttatcaccctcagggccatcttttgcaagtccaaaatcagagagt 293
Query: 988 tt 989
||
Sbjct: 292 tt 291
>gb|BE215906.2|BE215906 HV_CEb0008M23f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0008M23f, mRNA sequence
Length = 492
Score = 89.7 bits (45), Expect = 3e-016
Identities = 104/121 (85%), Gaps = 2/121 (1%)
Strand = Plus / Minus
Query: 738 gtcgttgagcttcgggagcgcccagtccaccaggctctgctccctgctg-ggccgcgact 796
||||||||| | |||| ||||||||||||||||| ||||||||| || | ||||| ||
Sbjct: 161 gtcgttgaggtacgggcgcgcccagtccaccaggttctgctccc-gcggcggccggctct 103
Query: 797 tgtcgatcgacttgcgccccgtcaggagctccagcaggaccacgccgaagctgtacacgt 856
|||| | || ||||||||||||||| ||||||||||| ||||||||||| | ||||||||
Sbjct: 102 tgtccaccggcttgcgccccgtcagcagctccagcagcaccacgccgaacccgtacacgt 43
Query: 857 c 857
|
Sbjct: 42 c 42
>gb|BF263242.2|BF263242 HV_CEa0006D16f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006D16f, mRNA sequence
Length = 910
Score = 79.8 bits (40), Expect = 3e-013
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 814 cccgtcaggagctccagcaggaccacgccgaagctgtacacgtc 857
|||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 744 cccgtcaggagctccagcagcaccacgccgaagctgtacacgtc 701
Score = 40.1 bits (20), Expect = 0.23
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1173 catgaactcgtagacaagcagccg 1196
||||||||||||||| ||||||||
Sbjct: 385 catgaactcgtagacgagcagccg 362
>gb|BF255625.2|BF255625 HVSMEf0007F20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007F20f, mRNA sequence
Length = 847
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 822 gagctccagcaggaccacgccgaagctgtacacgtc 857
|||||||||||| |||||||||||||||||||||||
Sbjct: 185 gagctccagcagcaccacgccgaagctgtacacgtc 150
>gb|BG300180.2|BG300180 HVSMEb0010M14f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0010M14f, mRNA sequence
Length = 514
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 822 gagctccagcaggaccacgccgaagctgtacacgtc 857
|||||||||||| |||||||||||||||||||||||
Sbjct: 447 gagctccagcagcaccacgccgaagctgtacacgtc 412
>gb|BQ462615.1|BQ462615 HI01H17T HI Hordeum vulgare subsp. vulgare cDNA clone HI01H17
5-PRIME, mRNA sequence
Length = 571
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 822 gagctccagcaggaccacgccgaagctgtacacgtc 857
|||||||||||| |||||||||||||||||||||||
Sbjct: 516 gagctccagcagcaccacgccgaagctgtacacgtc 481
>gb|BQ660205.1|BQ660205 HI01H17w HI Hordeum vulgare subsp. vulgare cDNA clone HI01H17
3-PRIME, mRNA sequence
Length = 681
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 822 gagctccagcaggaccacgccgaagctgtacacgtc 857
|||||||||||| |||||||||||||||||||||||
Sbjct: 579 gagctccagcagcaccacgccgaagctgtacacgtc 614
>gb|BU976968.1|BU976968 HA10J24r HA Hordeum vulgare subsp. vulgare cDNA clone HA10J24
5-PRIME, mRNA sequence
Length = 515
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 822 gagctccagcaggaccacgccgaagctgtacacgtc 857
|||||||||||| |||||||||||||||||||||||
Sbjct: 178 gagctccagcagcaccacgccgaagctgtacacgtc 143
>gb|BU996535.1|BU996535 HM13O21r HM Hordeum vulgare subsp. vulgare cDNA clone HM13O21
5-PRIME, mRNA sequence
Length = 561
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 814 cccgtcaggagctccagcaggaccacgccgaagctgtacacgtc 857
||||||||||||||||| || ||||| |||||||||||||||||
Sbjct: 139 cccgtcaggagctccagaagcaccaccccgaagctgtacacgtc 96
>gb|CA020283.1|CA020283 HV14N17r HV Hordeum vulgare subsp. vulgare cDNA clone HV14N17
5-PRIME, mRNA sequence
Length = 494
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 822 gagctccagcaggaccacgccgaagctgtacacgtc 857
|||||||||||| |||||||||||||||||||||||
Sbjct: 460 gagctccagcagcaccacgccgaagctgtacacgtc 425
>gb|AV837108.1|AV837108 AV837108 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd23n23, mRNA
sequence
Length = 667
Score = 61.9 bits (31), Expect = 6e-008
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 823 agctccagcaggaccacgccgaagctgtacacgtc 857
|||||||||||||| ||||||||||||||||||||
Sbjct: 563 agctccagcaggacgacgccgaagctgtacacgtc 597
>gb|AV928198.1|AV928198 AV928198 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27f16 3', mRNA sequence
Length = 780
Score = 61.9 bits (31), Expect = 6e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 811 cgccccgtcaggagctccagcaggaccacgccgaagctgtacacgtc 857
||||||| ||| | |||||| ||||||||||||||||||||||||||
Sbjct: 578 cgccccgacagcatctccaggaggaccacgccgaagctgtacacgtc 624
>gb|AU252274.1|AU252274 AU252274 salt-stressed barley root cDNA Hordeum vulgare subsp.
vulgare cDNA clone BR-S13 similar to probable
serine/threonine protein kinase NAK, mRNA sequence
Length = 637
Score = 60.0 bits (30), Expect = 2e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 811 cgccccgtcaggagctccagcaggaccacgccgaagctgtacacgt 856
||||||| ||| | |||||| |||||||||||||||||||||||||
Sbjct: 50 cgccccgacagcatctccaggaggaccacgccgaagctgtacacgt 5
>gb|AU252281.1|AU252281 AU252281 salt-stressed barley root cDNA Hordeum vulgare subsp.
vulgare cDNA clone BR-S19 similar to probable
serine/threonine protein kinase NAK, mRNA sequence
Length = 500
Score = 60.0 bits (30), Expect = 2e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 811 cgccccgtcaggagctccagcaggaccacgccgaagctgtacacgt 856
||||||| ||| | |||||| |||||||||||||||||||||||||
Sbjct: 50 cgccccgacagcatctccaggaggaccacgccgaagctgtacacgt 5
>gb|BU995308.1|BU995308 HM09N12r HM Hordeum vulgare subsp. vulgare cDNA clone HM09N12
5-PRIME, mRNA sequence
Length = 410
Score = 58.0 bits (29), Expect = 1e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 814 cccgtcaggagctccagcaggaccacgccgaagctgtacacgtcactcc 862
||||| || ||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 220 cccgtgagcagctccagcagcaccaccccgaagctgtacacgtcgctcc 172
>gb|BI950071.1|BI950071 HVSMEl0018F12f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0018F12f, mRNA sequence
Length = 873
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 810 gcgccccgtcaggagctccagcaggaccacgccgaagctgtacacgtc 857
|||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 117 gcgccccgtcgccagctccatcagcaccacgccgaagctgtacacgtc 70
>gb|BQ464898.1|BQ464898 HU02B07r HU Hordeum vulgare subsp. vulgare cDNA clone HU02B07
5-PRIME, mRNA sequence
Length = 613
Score = 56.0 bits (28), Expect = 4e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 822 gagctccagcaggaccacgccgaagctgtacacgtc 857
|||||||| ||| |||||||||||||||||||||||
Sbjct: 352 gagctccaccagcaccacgccgaagctgtacacgtc 317
>gb|BQ466575.1|BQ466575 HT02O23r HT Hordeum vulgare subsp. vulgare cDNA clone HT02O23
5-PRIME, mRNA sequence
Length = 598
Score = 56.0 bits (28), Expect = 4e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 822 gagctccagcaggaccacgccgaagctgtacacgtc 857
|||||||| ||| |||||||||||||||||||||||
Sbjct: 207 gagctccaccagcaccacgccgaagctgtacacgtc 172
>gb|BM370694.2|BM370694 EBro04_SQ001_N16_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_N16 5', mRNA sequence
Length = 244
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 810 gcgccccgtcaggagctccagcaggaccacgccgaagctgtacacgtc 857
|||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 163 gcgccccgtcgccagctccatcagcaccacgccgaagctgtacacgtc 116
>gb|BU967708.1|BU967708 HB05C13r BC Hordeum vulgare subsp. vulgare cDNA clone HB05C13
5-PRIME, mRNA sequence
Length = 328
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 823 agctccagcaggaccacgccgaagctgtacacgtc 857
|||||||||||||| |||||| |||||||||||||
Sbjct: 155 agctccagcaggacgacgccgtagctgtacacgtc 121
>gb|CA014046.1|CA014046 HT10D18r HT Hordeum vulgare subsp. vulgare cDNA clone HT10D18
5-PRIME, mRNA sequence
Length = 658
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 823 agctccagcaggaccacgccgaagctgtacacgtc 857
||||||||||| ||||| |||||||||||||||||
Sbjct: 267 agctccagcagcaccaccccgaagctgtacacgtc 233
>emb|AJ234733.1|HVU234733 Hordeum vulgare genomic DNA fragment; clone MWG2041.rev
Length = 367
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 823 agctccagcaggaccacgccgaagctgtacacgtc 857
|||||||||| |||||||||||||||||||||||
Sbjct: 170 agctccagcaccaccacgccgaagctgtacacgtc 204
>gb|BM816713.1|BM816713 HC114E03_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC114E03_SK.ab1 similar to Protein-tyrosine
kinase,Protein kinase,, mRNA sequence
Length = 587
Score = 52.0 bits (26), Expect = 6e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 1173 catgaactcgtagacaagcagccgatggtcatcttcgcagcaatatccgatcaacttcac 1232
||||||||||||||| |||| ||| || || || ||| |||| || ||||||||||||||
Sbjct: 246 catgaactcgtagaccagcatccggtgctcgtcctcgtagcagtacccgatcaacttcac 187
Query: 1233 ca 1234
||
Sbjct: 186 ca 185
>gb|BJ463997.1|BJ463997 BJ463997 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31g03 5', mRNA sequence
Length = 511
Score = 52.0 bits (26), Expect = 6e-005
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 880 gtcatcacatattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgc 939
||||| ||||| || || || |||||||| ||||||||||| || || || ||||||||
Sbjct: 169 gtcatgacatactctggagctgcataaccataggttcccattactcgagtagacacatga 110
Query: 940 gtctgatcaccttcagggccatcttt 965
|||| |||||| |||| ||||||||
Sbjct: 109 gtcttgtcacctacaggaccatcttt 84
>gb|BQ756172.1|BQ756172 EBem05_SQ002_G10_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_G10 5', mRNA sequence
Length = 520
Score = 52.0 bits (26), Expect = 6e-005
Identities = 131/166 (78%)
Strand = Plus / Minus
Query: 880 gtcatcacatattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgc 939
||||||||||||||||| || ||||| || ||||||||||| || || || || |||||
Sbjct: 512 gtcatcacatattcaggagctgcatagccataggttcccatgactcgagttgagacatgg 453
Query: 940 gtctgatcaccttcagggccatcttttgcgaggccaaagtcagacagtttggcagtataa 999
|| || || || ||| || | |||| ||||||||||| || || || ||| |||||
Sbjct: 452 gtttggtctccagtaggtccggttcttgctaggccaaagtctgaaagcttagcattataa 393
Query: 1000 tcggagtccagcagaatgtttgatgtcttgaaatctctgtagatga 1045
|| | || |||| |||||||||||||||||||| || |||||||
Sbjct: 392 tctgcgtatagcaagatgtttgatgtcttgaaatccctatagatga 347
>gb|CV057992.1|CV057992 BNEL33b6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL33b6 5' similar to probable
protein kinase, mRNA sequence
Length = 627
Score = 52.0 bits (26), Expect = 6e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 859 ctccgagcagtcaagtgaccggtcatcacatattcaggggcagcataaccgtaggttccc 918
||||| || ||||| || || ||||||||||||||||| || ||||| || |||||||||
Sbjct: 96 ctccgtgctgtcaaatggccagtcatcacatattcaggagctgcatagccataggttccc 37
Query: 919 at 920
||
Sbjct: 36 at 35
>gb|CV059608.1|CV059608 BNEL4A2 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL4A2 5' similar to protein kinase,
putative, mRNA sequence
Length = 531
Score = 52.0 bits (26), Expect = 6e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 859 ctccgagcagtcaagtgaccggtcatcacatattcaggggcagcataaccgtaggttccc 918
||||| || ||||| || || ||||||||||||||||| || ||||| || |||||||||
Sbjct: 97 ctccgtgctgtcaaatggccagtcatcacatattcaggagctgcatagccataggttccc 38
Query: 919 at 920
||
Sbjct: 37 at 36
>gb|AV837001.1|AV837001 AV837001 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd22d20, mRNA
sequence
Length = 638
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 825 ctccagcaggaccacgccgaagctgtacacgtc 857
||||||||| | |||||||||||||||||||||
Sbjct: 538 ctccagcagcagcacgccgaagctgtacacgtc 570
>gb|BQ661898.1|BQ661898 HP01M02w HP Hordeum vulgare subsp. vulgare cDNA clone HP01M02
3-PRIME, mRNA sequence
Length = 601
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 825 ctccagcaggaccacgccgaagctgtacacgtc 857
||||||||| || ||||||||||||||||||||
Sbjct: 435 ctccagcagcacgacgccgaagctgtacacgtc 467
>gb|BQ661900.1|BQ661900 HP01M04w HP Hordeum vulgare subsp. vulgare cDNA clone HP01M04
3-PRIME, mRNA sequence
Length = 651
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 825 ctccagcaggaccacgccgaagctgtacacgtc 857
||||||||| || ||||||||||||||||||||
Sbjct: 435 ctccagcagcacgacgccgaagctgtacacgtc 467
>gb|BU995787.1|BU995787 HM11F21r HM Hordeum vulgare subsp. vulgare cDNA clone HM11F21
5-PRIME, mRNA sequence
Length = 416
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 825 ctccagcaggaccacgccgaagctgtacacgtc 857
||||||||| ||||| |||||||||||||||||
Sbjct: 191 ctccagcagcaccaccccgaagctgtacacgtc 159
>gb|CA011468.1|CA011468 HT05J08u HT Hordeum vulgare subsp. vulgare cDNA clone HT05J08
3-PRIME, mRNA sequence
Length = 477
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 825 ctccagcaggaccacgccgaagctgtacacgtc 857
||||||||| |||| ||||||||||||||||||
Sbjct: 438 ctccagcagcaccatgccgaagctgtacacgtc 470
>gb|CB879472.1|CB879472 HP02G07w HP Hordeum vulgare subsp. vulgare cDNA clone HP02G07
3-PRIME, mRNA sequence
Length = 674
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 825 ctccagcaggaccacgccgaagctgtacacgtc 857
||||||||| || ||||||||||||||||||||
Sbjct: 435 ctccagcagcacgacgccgaagctgtacacgtc 467
>gb|CB881943.1|CB881943 HM11F21w HM Hordeum vulgare subsp. vulgare cDNA clone HM11F21
3-PRIME, mRNA sequence
Length = 464
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 825 ctccagcaggaccacgccgaagctgtacacgtc 857
||||||||| ||||| |||||||||||||||||
Sbjct: 353 ctccagcagcaccaccccgaagctgtacacgtc 385
>gb|BQ768749.1|BQ768749 EBro08_SQ012_G15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_G15 5', mRNA sequence
Length = 635
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 810 gcgccccgtcaggagctccagcaggaccacgccgaagctgtacacgtc 857
||||||||||| |||||||||||| || || ||||||| ||| |||||
Sbjct: 414 gcgccccgtcatgagctccagcagcacgaccccgaagccgtagacgtc 367
>gb|BU983256.1|BU983256 HA29B10r HA Hordeum vulgare subsp. vulgare cDNA clone HA29B10
5-PRIME, mRNA sequence
Length = 569
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 826 tccagcaggaccacgccgaagctgtacacgtc 857
|||||||| ||||| |||||||||||||||||
Sbjct: 259 tccagcagcaccaccccgaagctgtacacgtc 228
>gb|BI959357.1|BI959357 HVSMEn0019F17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019F17f, mRNA sequence
Length = 656
Score = 46.1 bits (23), Expect = 0.004
Identities = 77/95 (81%)
Strand = Plus / Minus
Query: 763 tccaccaggctctgctccctgctgggccgcgacttgtcgatcgacttgcgccccgtcagg 822
||||||||| ||||||||||||| ||||| | |||||| | ||| | || || | |||
Sbjct: 538 tccaccaggttctgctccctgctcggccgggtcttgtccaccgagtgccggccggagagg 479
Query: 823 agctccagcaggaccacgccgaagctgtacacgtc 857
| ||||||||| ||||| || || |||||||||||
Sbjct: 478 atctccagcagcaccaccccaaaactgtacacgtc 444
>gb|BM816134.1|BM816134 HC05B11_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC05B11_T3.ab1 similar to Arabidopsis thaliana wak4
gene; wall-associated kinase 4. (AJ009695) [Oryza
sativa],Similar to wak1 gene (AJ009696) [Oryza
sativa],putative wall-associated kinase 2 [Oryza
sativa],serine/threonine protein kinase [Oryza sativa
subsp. japonica], mRNA sequence
Length = 810
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 823 agctccagcaggaccacgccgaagctgtacacgtcactc 861
|||||||| || || ||||| ||||||||||||||||||
Sbjct: 8 agctccagaagaacaacgccaaagctgtacacgtcactc 46
>gb|BM816135.1|BM816135 HC05B12_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC05B12_T3.ab1 similar to Arabidopsis thaliana wak4
gene; wall-associated kinase 4. (AJ009695) [Oryza
sativa],Similar to wak1 gene (AJ009696) [Oryza
sativa],putative wall-associated kinase 2 [Oryza
sativa],serine/threonine protein kinase [Oryza sativa
subsp. japonica], mRNA sequence
Length = 844
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 823 agctccagcaggaccacgccgaagctgtacacgtcactc 861
|||||||| || || ||||| ||||||||||||||||||
Sbjct: 8 agctccagaagaacaacgccaaagctgtacacgtcactc 46
>gb|BJ450289.1|BJ450289 BJ450289 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak28p18 5', mRNA sequence
Length = 609
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 823 agctccagcaggaccacgccgaagctgtacacgtcactc 861
|||||||| || || ||||| ||||||||||||||||||
Sbjct: 311 agctccagaagaacaacgccaaagctgtacacgtcactc 273
>gb|BJ457712.1|BJ457712 BJ457712 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak28p18 3', mRNA sequence
Length = 708
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 823 agctccagcaggaccacgccgaagctgtacacgtcactc 861
|||||||| || || ||||| ||||||||||||||||||
Sbjct: 491 agctccagaagaacaacgccaaagctgtacacgtcactc 529
>gb|BJ471569.1|BJ471569 BJ471569 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal19g05 5', mRNA sequence
Length = 623
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1015 atgtttgatgtcttgaaatctctgtagatga 1045
|||||||||||||||||||| || |||||||
Sbjct: 597 atgtttgatgtcttgaaatccctatagatga 567
>gb|BM373447.2|BM373447 EBma04_SQ004_H16_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ004_H16 5', mRNA sequence
Length = 601
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 817 gtcaggagctccagcaggaccacgccgaagctgta 851
|||| ||||||||| ||||||||||| ||||||||
Sbjct: 143 gtcacgagctccaggaggaccacgccaaagctgta 109
>gb|BM373450.2|BM373450 EBma04_SQ004_H19_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ004_H19 5', mRNA sequence
Length = 378
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 823 agctccagcaggaccacgccgaagctgtacacgtc 857
||||||||||| | ||||||||||||||| |||||
Sbjct: 369 agctccagcagcagcacgccgaagctgtagacgtc 335
>gb|BM370983.2|BM370983 EBro04_SQ003_C04_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_C04 5', mRNA sequence
Length = 670
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 761 agtccaccaggctctgctccctg 783
|||||||||||||||||||||||
Sbjct: 282 agtccaccaggctctgctccctg 260
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 822 gagctccagcaggaccacgccgaagctgtacacgtc 857
|||||| || ||||| |||||||||||||| |||||
Sbjct: 221 gagctcgaggaggacgacgccgaagctgtagacgtc 186
>gb|BU994831.1|BU994831 HM08F14r HM Hordeum vulgare subsp. vulgare cDNA clone HM08F14
5-PRIME, mRNA sequence
Length = 565
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 823 agctccagcaggaccacgccgaagctgtacacgtc 857
|||||||| || | |||||||||||||||||||||
Sbjct: 165 agctccaggagcagcacgccgaagctgtacacgtc 131
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 254,521
Number of Sequences: 312970
Number of extensions: 254521
Number of successful extensions: 98756
Number of sequences better than 0.5: 91
Number of HSP's better than 0.5 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98592
Number of HSP's gapped (non-prelim): 155
length of query: 1649
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1630
effective length of database: 169,188,109
effective search space: 275776617670
effective search space used: 275776617670
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)