BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430946.2.2
(3838 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ768380.1|BQ768380 EBro08_SQ011_E16_R root, 3 week, dro... 882 0.0
gb|BF260649.2|BF260649 HVSMEf0022J05f Hordeum vulgare seedl... 854 0.0
gb|CB882157.1|CB882157 HL01A17w HL Hordeum vulgare subsp. v... 817 0.0
gb|BF263370.1|BF263370 HV_CEa0006J03f Hordeum vulgare seedl... 771 0.0
gb|BG343963.1|BG343963 HVSMEg0007D23f Hordeum vulgare pre-a... 745 0.0
gb|CA015150.1|CA015150 HT13H01r HT Hordeum vulgare subsp. v... 654 0.0
gb|BQ472793.1|BQ472793 HB01H14r BC Hordeum vulgare subsp. v... 650 0.0
gb|BI948889.1|BI948889 HVSMEl0011E15f Hordeum vulgare spike... 640 0.0
gb|BJ453328.1|BJ453328 BJ453328 K. Sato unpublished cDNA li... 640 0.0
gb|BU972673.1|BU972673 HB22G06r BC Hordeum vulgare subsp. v... 622 e-176
gb|BF064711.2|BF064711 HV_CEb0017G02f Hordeum vulgare seedl... 601 e-170
gb|BQ463453.1|BQ463453 HI05F03r HI Hordeum vulgare subsp. v... 597 e-168
gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots... 593 e-167
gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. v... 575 e-162
gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. v... 575 e-162
gb|AV836384.1|AV836384 AV836384 K. Sato unpublished cDNA li... 573 e-161
gb|BM376392.2|BM376392 EBem05_SQ002_B14_R embryo, 14 DPA, n... 551 e-155
gb|AL505797.1|AL505797 AL505797 Hordeum vulgare Barke roots... 547 e-154
gb|BF258638.2|BF258638 HVSMEf0016E13f Hordeum vulgare seedl... 547 e-154
gb|BE214667.2|BE214667 HV_CEb0004C10f Hordeum vulgare seedl... 519 e-145
gb|BU985115.1|BU985115 HF06C19r HF Hordeum vulgare subsp. v... 490 e-136
gb|BQ467842.1|BQ467842 HR01B16r HR Hordeum vulgare subsp. v... 450 e-124
gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. v... 353 3e-095
gb|BU969975.1|BU969975 HB13D11r BC Hordeum vulgare subsp. v... 329 4e-088
gb|BQ469740.1|BQ469740 HZ01L16r HZ Hordeum vulgare subsp. v... 315 6e-084
gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. v... 315 6e-084
gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. v... 313 2e-083
gb|BE411751.1|BE411751 ISC008.H06F990806 ITEC ISC Barley Le... 278 1e-072
gb|BE411894.1|BE411894 ISC010.D05F990917 ITEC ISC Barley Le... 268 1e-069
gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA li... 268 1e-069
gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA li... 256 5e-066
gb|BJ468308.1|BJ468308 BJ468308 K. Sato unpublished cDNA li... 254 2e-065
gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DA... 248 1e-063
gb|BJ447699.1|BJ447699 BJ447699 K. Sato unpublished cDNA li... 242 7e-062
gb|BJ455449.1|BJ455449 BJ455449 K. Sato unpublished cDNA li... 242 7e-062
gb|AL503049.1|AL503049 AL503049 Hordeum vulgare Barke roots... 214 2e-053
gb|BQ464910.1|BQ464910 HU02B19r HU Hordeum vulgare subsp. v... 212 6e-053
gb|AL503528.1|AL503528 AL503528 Hordeum vulgare Barke roots... 180 2e-043
gb|BF258768.2|BF258768 HVSMEf0016K01f Hordeum vulgare seedl... 180 2e-043
gb|BI779535.2|BI779535 EBro01_SQ004_F12_R root, 3 week, hyd... 180 2e-043
gb|CA031178.1|CA031178 HX09D18r HX Hordeum vulgare subsp. v... 180 2e-043
gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA li... 178 9e-043
gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA li... 178 9e-043
gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare s... 178 9e-043
gb|AV836573.1|AV836573 AV836573 K. Sato unpublished cDNA li... 174 1e-041
gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. v... 174 1e-041
gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare s... 170 2e-040
gb|BU989992.1|BU989992 HF23J07r HF Hordeum vulgare subsp. v... 168 9e-040
gb|AL505671.1|AL505671 AL505671 Hordeum vulgare Barke roots... 167 3e-039
gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA li... 159 8e-037
gb|CA009005.1|CA009005 HU12N24r HU Hordeum vulgare subsp. v... 157 3e-036
gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA li... 151 2e-034
gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA li... 151 2e-034
gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. v... 151 2e-034
gb|BU999035.1|BU999035 HI12P13r HI Hordeum vulgare subsp. v... 149 8e-034
gb|BE060456.3|BE060456 HVSMEg0012F17f Hordeum vulgare pre-a... 147 3e-033
gb|AL503288.1|AL503288 AL503288 Hordeum vulgare Barke roots... 137 3e-030
gb|BI951084.1|BI951084 HVSMEl0024F09f Hordeum vulgare spike... 133 5e-029
gb|AV932043.1|AV932043 AV932043 K. Sato unpublished cDNA li... 133 5e-029
gb|CA020497.1|CA020497 HZ36H21r HZ Hordeum vulgare subsp. v... 131 2e-028
gb|BM368747.1|BM368747 EBem08_SQ004_H23_R embryo, 40 DPA, n... 129 7e-028
gb|AL500926.1|AL500926 AL500926 Hordeum vulgare Barke roots... 127 3e-027
gb|AL504419.1|AL504419 AL504419 Hordeum vulgare Barke roots... 127 3e-027
gb|BF628750.2|BF628750 HVSMEb0007M11f Hordeum vulgare seedl... 127 3e-027
gb|CV061189.1|CV061189 BNEL65h6 Barley EST endosperm librar... 127 3e-027
gb|BU995821.1|BU995821 HM11H13r HM Hordeum vulgare subsp. v... 123 5e-026
gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA li... 119 7e-025
gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA li... 119 7e-025
gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA li... 119 7e-025
gb|CA012990.1|CA012990 HT07B01r HT Hordeum vulgare subsp. v... 119 7e-025
gb|BI957138.1|BI957138 HVSMEn0007L07f Hordeum vulgare rachi... 117 3e-024
gb|BG414971.1|BG414971 HVSMEk0004I03f Hordeum vulgare testa... 113 4e-023
gb|BQ665967.1|BQ665967 HZ01L16u HZ Hordeum vulgare subsp. v... 111 2e-022
gb|BI779022.2|BI779022 EBro01_SQ002_J19_R root, 3 week, hyd... 111 2e-022
gb|BE216853.1|BE216853 HV_CEb0011N06f Hordeum vulgare seedl... 109 7e-022
gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachi... 109 7e-022
gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA li... 109 7e-022
gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA li... 109 7e-022
gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA li... 109 7e-022
gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA li... 109 7e-022
gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA li... 109 7e-022
gb|BM370580.2|BM370580 EBro08_SQ004_K11_R root, 3 week, dro... 109 7e-022
gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, dro... 109 7e-022
gb|BQ663315.1|BQ663315 HU02B19u HU Hordeum vulgare subsp. v... 107 3e-021
gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA li... 105 1e-020
gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA li... 105 1e-020
gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA li... 105 1e-020
gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no... 105 1e-020
gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. v... 105 1e-020
gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. v... 105 1e-020
gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. v... 105 1e-020
gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. v... 105 1e-020
gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. v... 105 1e-020
gb|BQ463573.1|BQ463573 HI05L24r HI Hordeum vulgare subsp. v... 101 2e-019
gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. v... 101 2e-019
gb|BF255020.3|BF255020 HVSMEf0005K21f Hordeum vulgare seedl... 98 3e-018
gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. v... 98 3e-018
gb|AV836682.1|AV836682 AV836682 K. Sato unpublished cDNA li... 94 4e-017
gb|BF624748.2|BF624748 HVSMEa0017K05f Hordeum vulgare seedl... 94 4e-017
gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA li... 94 4e-017
gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA li... 94 4e-017
gb|CK124710.1|CK124710 BES1824110c01 BES1824 Hordeum vulgar... 94 4e-017
gb|AL499724.1|AL499724 AL499724 Hordeum vulgare Barke etiol... 92 2e-016
gb|BG343763.2|BG343763 HVSMEg0006L01f Hordeum vulgare pre-a... 90 6e-016
gb|BQ663566.1|BQ663566 HU03C22u HU Hordeum vulgare subsp. v... 90 6e-016
gb|CA011082.1|CA011082 HT07B01u HT Hordeum vulgare subsp. v... 90 6e-016
gb|CA015920.1|CA015920 HV11G20u HV Hordeum vulgare subsp. v... 90 6e-016
gb|CA017356.1|CA017356 HV12L21u HV Hordeum vulgare subsp. v... 90 6e-016
gb|BI958555.1|BI958555 HVSMEn0015J16f Hordeum vulgare rachi... 88 3e-015
gb|BG417165.1|BG417165 HVSMEk0016J06f Hordeum vulgare testa... 86 1e-014
gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedl... 86 1e-014
gb|AV926207.1|AV926207 AV926207 K. Sato unpublished cDNA li... 86 1e-014
gb|AV926208.1|AV926208 AV926208 K. Sato unpublished cDNA li... 86 1e-014
gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedl... 84 4e-014
gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike... 84 4e-014
gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green... 84 4e-014
gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA li... 84 4e-014
gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subs... 84 4e-014
gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. v... 84 4e-014
gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. v... 84 4e-014
gb|BE193304.2|BE193304 HVSMEh0080I07f Hordeum vulgare 5-45 ... 82 2e-013
gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachi... 78 2e-012
gb|AV923841.1|AV923841 AV923841 K. Sato unpublished cDNA li... 78 2e-012
gb|BU984513.1|BU984513 HF04C11r HF Hordeum vulgare subsp. v... 78 2e-012
gb|CA020225.1|CA020225 HV14L03r HV Hordeum vulgare subsp. v... 76 1e-011
gb|CA023762.1|CA023762 HZ47F10r HZ Hordeum vulgare subsp. v... 76 1e-011
gb|BJ447591.1|BJ447591 BJ447591 K. Sato unpublished cDNA li... 74 4e-011
gb|BJ464018.1|BJ464018 BJ464018 K. Sato unpublished cDNA li... 74 4e-011
gb|BQ739972.1|BQ739972 HB107G12 HB Hordeum vulgare subsp. v... 74 4e-011
gb|BQ765797.1|BQ765797 EBro03_SQ008_O01_R root, 3 week, wat... 72 2e-010
gb|CA031458.1|CA031458 HX10A06r HX Hordeum vulgare subsp. v... 72 2e-010
gb|AL501744.1|AL501744 AL501744 Hordeum vulgare Barke roots... 70 6e-010
gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA li... 70 6e-010
gb|BE060794.1|BE060794 HVSMEg0013G05f Hordeum vulgare pre-a... 68 2e-009
gb|BI956663.1|BI956663 HVSMEn0004K08f Hordeum vulgare rachi... 68 2e-009
gb|BF265178.2|BF265178 HV_CEa0011H21f Hordeum vulgare seedl... 68 2e-009
gb|BQ661984.1|BQ661984 HR01B16u HR Hordeum vulgare subsp. v... 68 2e-009
gb|CB882206.1|CB882206 HL01D01w HL Hordeum vulgare subsp. v... 68 2e-009
gb|BG368813.1|BG368813 HVSMEi0020M13f Hordeum vulgare 20 DA... 66 9e-009
gb|BF253907.1|BF253907 HVSMEf0002H08f Hordeum vulgare seedl... 64 4e-008
gb|AV923682.1|AV923682 AV923682 K. Sato unpublished cDNA li... 64 4e-008
gb|BJ463805.1|BJ463805 BJ463805 K. Sato unpublished cDNA li... 64 4e-008
gb|BQ661318.1|BQ661318 HM02P11u HM Hordeum vulgare subsp. v... 64 4e-008
gb|BM372877.2|BM372877 EBma04_SQ002_E01_R maternal, 10 DPA,... 64 4e-008
gb|BF624752.2|BF624752 HVSMEa0017K09f Hordeum vulgare seedl... 60 6e-007
gb|BF259426.2|BF259426 HVSMEf0019B07f Hordeum vulgare seedl... 60 6e-007
gb|BU967435.1|BU967435 HB04E22r BC Hordeum vulgare subsp. v... 60 6e-007
gb|BU994416.1|BU994416 HM07A02r HM Hordeum vulgare subsp. v... 60 6e-007
gb|BU996252.1|BU996252 HM13A10r HM Hordeum vulgare subsp. v... 60 6e-007
gb|CA009625.1|CA009625 HU14K11r HU Hordeum vulgare subsp. v... 60 6e-007
gb|CA019440.1|CA019440 HV11P23r HV Hordeum vulgare subsp. v... 60 6e-007
gb|CA031702.1|CA031702 HX10O05r HX Hordeum vulgare subsp. v... 60 6e-007
gb|BI956967.1|BI956967 HVSMEn0006I08f Hordeum vulgare rachi... 58 2e-006
gb|AW982533.3|AW982533 HVSMEg0003I09f Hordeum vulgare pre-a... 58 2e-006
gb|AV925770.1|AV925770 AV925770 K. Sato unpublished cDNA li... 58 2e-006
gb|BQ465804.1|BQ465804 HU04L18r HU Hordeum vulgare subsp. v... 58 2e-006
gb|BQ469182.1|BQ469182 HM03K08r HM Hordeum vulgare subsp. v... 58 2e-006
gb|BU988138.1|BU988138 HF16M09r HF Hordeum vulgare subsp. v... 58 2e-006
gb|CA009062.1|CA009062 HU13B03r HU Hordeum vulgare subsp. v... 58 2e-006
gb|CA025257.1|CA025257 HZ51J24r HZ Hordeum vulgare subsp. v... 58 2e-006
gb|BQ468579.1|BQ468579 HM01K12T HM Hordeum vulgare subsp. v... 56 9e-006
gb|CA026701.1|CA026701 HZ56L02r HZ Hordeum vulgare subsp. v... 56 9e-006
gb|CB883651.1|CB883651 HQ02O03w HQ Hordeum vulgare subsp. v... 54 4e-005
gb|BF259601.3|BF259601 HVSMEf0019M06f Hordeum vulgare seedl... 52 1e-004
gb|BG299430.2|BG299430 HVSMEa0019P14f Hordeum vulgare seedl... 50 6e-004
gb|BQ468970.1|BQ468970 HM02P11r HM Hordeum vulgare subsp. v... 50 6e-004
gb|BI958001.1|BI958001 HVSMEn0012N14f Hordeum vulgare rachi... 48 0.002
gb|AV910504.1|AV910504 AV910504 K. Sato unpublished cDNA li... 48 0.002
gb|CA017986.1|CA017986 HV07A23r HV Hordeum vulgare subsp. v... 48 0.002
gb|CA024787.1|CA024787 HZ50E24r HZ Hordeum vulgare subsp. v... 48 0.002
gb|BI948539.1|BI948539 HVSMEl0010A07f Hordeum vulgare spike... 46 0.009
gb|AL500125.1|AL500125 AL500125 Hordeum vulgare Barke etiol... 44 0.034
gb|BM442929.2|BM442929 EBro02_SQ001_O08_R root, 3 week, hyd... 44 0.034
gb|BQ760759.1|BQ760759 EBro03_SQ003_G08_R root, 3 week, wat... 44 0.034
gb|AW982722.1|AW982722 HVSMEg0004A13f Hordeum vulgare pre-a... 42 0.13
gb|BG300882.1|BG300882 HVSMEb0018M20f Hordeum vulgare seedl... 42 0.13
gb|BG301023.1|BG301023 HVSMEb0019E17f Hordeum vulgare seedl... 42 0.13
gb|BI952301.1|BI952301 HVSMEm0005N03f Hordeum vulgare green... 42 0.13
gb|BI960202.1|BI960202 HVSMEn0023K20f Hordeum vulgare rachi... 42 0.13
gb|BE060167.3|BE060167 HVSMEg0011C02f Hordeum vulgare pre-a... 42 0.13
gb|BE195554.3|BE195554 HVSMEh0089G13f Hordeum vulgare 5-45 ... 42 0.13
gb|BG368093.2|BG368093 HVSMEi0015K03f Hordeum vulgare 20 DA... 42 0.13
gb|AV916668.1|AV916668 AV916668 K. Sato unpublished cDNA li... 42 0.13
gb|AV921958.1|AV921958 AV921958 K. Sato unpublished cDNA li... 42 0.13
gb|AV927371.1|AV927371 AV927371 K. Sato unpublished cDNA li... 42 0.13
gb|BQ755911.1|BQ755911 EBed07_SQ003_N24_R endosperm, 28 DPA... 42 0.13
gb|BU973068.1|BU973068 HB23K12r BC Hordeum vulgare subsp. v... 42 0.13
gb|BU975933.1|BU975933 HB32L24r BC Hordeum vulgare subsp. v... 42 0.13
gb|CA006840.1|CA006840 HU05N14r HU Hordeum vulgare subsp. v... 42 0.13
gb|CA019477.1|CA019477 HV12B23r HV Hordeum vulgare subsp. v... 42 0.13
gb|CA032994.1|CA032994 HX14M21r HX Hordeum vulgare subsp. v... 42 0.13
>gb|BQ768380.1|BQ768380 EBro08_SQ011_E16_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_E16 5', mRNA sequence
Length = 729
Score = 882 bits (445), Expect = 0.0
Identities = 658/729 (90%)
Strand = Plus / Minus
Query: 1407 gatgacatggatagcttcctttagtagagaagctgggtttgttgaaggtggtatgccacc 1466
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct: 729 gatgacatggatggcttcctttagtagggaagctgggttcgttgaaggtggtatgcctct 670
Query: 1467 ttgtgtcataaaggtggatgcaatgaaaataggagactgaccaaagcgtttctccaattt 1526
||| |||||||||||||||||| | || ||||||||||||||||| |||||||||||| |
Sbjct: 669 ttgagtcataaaggtggatgcagtaaatataggagactgaccaaatcgtttctccaatct 610
Query: 1527 cctctgggacataagcactgacctttcatcctcgtaaccttcaataccctcttcgatgtc 1586
| ||||||||||||||| |||||||||||||| |||||||| || |||||||| || ||
Sbjct: 609 cttctgggacataagcatggacctttcatcctcataaccttctattccctcttctatatc 550
Query: 1587 ttccatattgaagatgggagctgaagattctgttctcttcataatacggctttgactatc 1646
||||| |||||||||||||| ||||| || ||||||||||| |||||| ||| ||||
Sbjct: 549 atccatgttgaagatgggagcagaagactcagttctcttcatcatacggtttttgttatc 490
Query: 1647 catataactcttgttctttttcttccttctaccacagcagctcttaataacaatgtttgg 1706
|||||| ||||||||||||||||| || | ||||||||||||||||| ||||||||| ||
Sbjct: 489 catatagctcttgttctttttctttctgccaccacagcagctcttaacaacaatgttagg 430
Query: 1707 ctccagatcagcttcagtcaaaacaggatcgtatccatacaaagcctgtctattgaaaca 1766
|||| |||||||||||| || |||||||| || |||||||| ||||| |||||||||||
Sbjct: 429 ttccaaatcagcttcagttaatacaggatcatagccatacaaggcctgcctattgaaaca 370
Query: 1767 gcatcctgttcccacgtaaactggaccctgaatgccatccagacctttcatgttgatatc 1826
|||||||||||| || || | |||||| ||||||||||| | ||||||||||||||||||
Sbjct: 369 gcatcctgttccgacatacattggaccttgaatgccatctaaacctttcatgttgatatc 310
Query: 1827 aaagaaaactatgttccgattagcatatcgatcgtgcaagtcaatgccatcaaatctctg 1886
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 309 aaagaaaactatgttgcgattagcatatcgatcgtgcaaatcaatgccatcaaatctttg 250
Query: 1887 tggaaattgtacataacaagttttccttcctagagccggatccatcatgaagcacattgc 1946
||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 249 tggaaattggacatagcaagttttccttcttagagcgggatccatcatgaagcacattgc 190
Query: 1947 ttctctaagagctttgctgctattgaagtaatggtcgcaatccacattgagaagataggc 2006
|||||||||||||||||||||||||||||| || || ||||||||||| |||||||||||
Sbjct: 189 ttctctaagagctttgctgctattgaagtagtgatcacaatccacattaagaagataggc 130
Query: 2007 accatttgtcagcacagcagatacacgaatcagcgcattcattgcaccagccttcttgtg 2066
|||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 129 accattcgtcaacacagcagatacgcgaatcagtgcattcattgcaccagccttcttgtg 70
Query: 2067 atgctgaaagcctggtctcttttcacgagagacatagacaagacgtggtaactcatttcc 2126
|||||| || |||||||||||||||||||||||||| ||||| ||||| |||||||| ||
Sbjct: 69 atgctggaaacctggtctcttttcacgagagacatacacaagccgtggcaactcattacc 10
Query: 2127 atcagtgtc 2135
|||||||||
Sbjct: 9 atcagtgtc 1
>gb|BF260649.2|BF260649 HVSMEf0022J05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0022J05f, mRNA sequence
Length = 804
Score = 854 bits (431), Expect = 0.0
Identities = 645/717 (89%)
Strand = Plus / Minus
Query: 1695 aacaatgtttggctccagatcagcttcagtcaaaacaggatcgtatccatacaaagcctg 1754
||||||| | || |||| |||||| ||||| || |||||||| || |||||||| |||||
Sbjct: 723 aacaatggtaggttccaaatcagcctcagttaatacaggatcatagccatacaaggcctg 664
Query: 1755 tctattgaaacagcatcctgttcccacgtaaactggaccctgaatgccatccagaccttt 1814
|| |||| |||||||||| || || || | |||||| ||||||||||| | ||||||
Sbjct: 663 cctgttgancaagcatcctgtcccgacatacattggaccntgaatgccatctaaaccttt 604
Query: 1815 catgttgatatcaaagaaaactatgttccgattagcatatcgatcgtgcaagtcaatgcc 1874
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 603 catgttgatatcaaagaaaactatgttgcgattagcatatcgatcgtgcaaatcaatgcc 544
Query: 1875 atcaaatctctgtggaaattgtacataacaagttttccttcctagagccggatccatcat 1934
||||||||| ||||||||||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 543 atcaaatctttgtggaaattggacatagcaagtcttccttcctagagcgggatccatcat 484
Query: 1935 gaagcacattgcttctctaagagctttgctgctattgaagtaatggtcgcaatccacatt 1994
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct: 483 gaagcacattgcttctctaagagctttgctgctattgaagtagtgatcacaatccacatt 424
Query: 1995 gagaagataggcaccatttgtcagcacagcagatacacgaatcagcgcattcattgcacc 2054
|||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||
Sbjct: 423 aagaagataggcaccatttgtcaacacagcagatacgcgaatcagtgcattcattgcacc 364
Query: 2055 agccttcttgtgatgctgaaagcctggtctcttttcacgagagacatagacaagacgtgg 2114
|||||||||||||||||| || |||||||||||||||||||||||||| ||||| |||||
Sbjct: 363 agccttcttgtgatgctggaaacctggtctcttttcacgagagacatacacaagccgtgg 304
Query: 2115 taactcatttccatcagtgtcgagcccaccactgtgccccaagaaaacctgaatcatgcc 2174
|||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct: 303 caactcattaccatcagtgtcaaggccaccactgtgccccaagaacacctgaatcatgcc 244
Query: 2175 aggatggtccctaggattattcccaggccatgcagttccatcagccatggtccacccctc 2234
||||||||||||||| |||||||||||||| || || ||||| |||||||||||||||||
Sbjct: 243 aggatggtccctagggttattcccaggccaagcggtgccatcggccatggtccacccctc 184
Query: 2235 ttcaggcactttctgtgctttggcaacaagggcattgattcttactttgaattcttcata 2294
||| |||||||| || |||||||||||||| || ||||||| || ||| |||||||||||
Sbjct: 183 ttcgggcactttttgggctttggcaacaagtgcgttgattcgtattttaaattcttcata 124
Query: 2295 ctccctcttcattgcgcgtctttccttaacaaatgaaggttgaattttgtccttcaggta 2354
||| ||||||||||| || |||||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 123 ctctctcttcattgctcgcctttccttcacaaaagaaggctgaattttgtccttcaggta 64
Query: 2355 atctattttttgagcaaagtaaaattctggagctcttggttcaatattgtgcttctt 2411
|||||||||||| ||||||||| ||||| || ||||||||||| |||||||||||
Sbjct: 63 atctattttttgctgaaagtaaaactctggggcccttggttcaatgttgtgcttctt 7
>gb|CB882157.1|CB882157 HL01A17w HL Hordeum vulgare subsp. vulgare cDNA clone HL01A17
3-PRIME, mRNA sequence
Length = 652
Score = 817 bits (412), Expect = 0.0
Identities = 589/647 (91%), Gaps = 1/647 (0%)
Strand = Plus / Minus
Query: 1824 atcaaagaaaactatgttccgattagcatatcgatcgtgcaagtcaatgccatcaaatct 1883
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 652 atcaaagaaaactatgtgncgattagcatatcgatcgtgcaaatcaatgccatcaaatct 593
Query: 1884 ctgtggaaattgtacataacaagttttccttcctagagccggatccatcatgaagcacat 1943
||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 592 ttgtggaaattggacatagcaagtcttccttcctagagcgggatccatcatgaagcacat 533
Query: 1944 tgcttctctaagagctttgctgctattgaagtaatggtcgcaatccacattgagaagata 2003
||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||
Sbjct: 532 tgcttctctaagagctttgctgctattgaagtagtgatcacaatccacattaagaagata 473
Query: 2004 ggcaccatttgtcagcacagcagatacacgaatcagcgcattcattgcaccagccttctt 2063
|||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 472 ggcaccatttgtcaacacagcagatacgcgaatcagtgcattcattgcaccagccttctt 413
Query: 2064 gtgatgctgaaagcctggtctcttttcacgagagacatagacaagacgtggtaactcatt 2123
||||||||| || |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 412 gtgatgctggaaacctggtctcttttcacgagagacatacacaagccgtggcaactcatt 353
Query: 2124 tccatcagtgtcgagcccaccactgtgccccaagaaaacctgaatcatgccaggatggtc 2183
||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 352 accatcagtgtcaaggccaccactgtgccccaagaacacctgaatcatgccaggatggtc 293
Query: 2184 cctaggattattcccaggccatgcagttccatcagccatggtccacccctcttcaggcac 2243
|||||| |||||||||||||| || || ||||| |||||||||||||||||||| |||||
Sbjct: 292 cctagggttattcccaggccaagcggtgccatcggccatggtccacccctcttcgggcac 233
Query: 2244 tttctgtgctttggcaacaagggcattgattcttactttgaattcttcatactccctctt 2303
||| || |||||||||||||| || ||||||| || ||| |||||||||||||| |||||
Sbjct: 232 tttttgggctttggcaacaagtgcgttgattcgtattttaaattcttcatactctctctt 173
Query: 2304 cattgcgcgtctttccttaacaaatgaaggttgaattttgtccttcaggtaatctatttt 2363
|||||| || |||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 172 cattgctcgcctttccttcacaaaagaaggctgaattttgtccttcaggtaatctatttt 113
Query: 2364 ttgagcaaagtaaaattctggagctcttggttcaatattgtgcttcttacaaaagggaac 2423
||| ||||||||| ||||| || ||||||||||| ||||||||||| || || || ||
Sbjct: 112 ttgctgaaagtaaaactctggggcccttggttcaatgttgtgcttcttgcagaatgg-ac 54
Query: 2424 ccactttctagcaaattctgcggtttctgagagagactcaaaagtca 2470
|||||| |||||||||||||| ||||||||||| |||||||| ||||
Sbjct: 53 ccacttcctagcaaattctgcagtttctgagagcgactcaaacgtca 7
>gb|BF263370.1|BF263370 HV_CEa0006J03f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006J03f, mRNA sequence
Length = 848
Score = 771 bits (389), Expect = 0.0
Identities = 674/769 (87%)
Strand = Plus / Minus
Query: 996 catcccagcataattgctaatctcaggaatgataaatttattggtaaggaggcagatagc 1055
||||||||||| ||| || |||||||||||||||| || ||||| ||||| ||||||||
Sbjct: 769 catcccagcattattactgatctcaggaatgataaccttgttggtgaggagccagatagc 710
Query: 1056 gggaagcacacaataggcaataagcggaatggatgtgattggatatacaatagtgttgat 1115
|| ||| |||||||||| ||||| || | |||||| |||||||| ||||| ||||||||
Sbjct: 709 agggagcccacaataggcgataagtgggagggatgttattggataaacaatggtgttgat 650
Query: 1116 gtaagccagcctctccaaaagcttcaatcgtccattgtaaccataccagataggacaatg 1175
|||||||| |||||||| ||| ||||| || ||| |||| |||||||||||||||||
Sbjct: 649 gtaagccaccctctccagaagtttcaaccgcccaccgtaattgtaccagataggacaatg 590
Query: 1176 tctactaagcagaatttccactgacccaagagcccaacggagcacctgattaagacgatc 1235
||| |||| ||||||||| |||||||| |||||||| || ||||| ||||||||||| ||
Sbjct: 589 tctgctaaacagaatttcaactgacccgagagcccatcgcagcacttgattaagacggtc 530
Query: 1236 ggaaagattgattggtgcagaacccttgaaacaaggtcgtggtggcatgcagtagattga 1295
|| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 529 agacagattgattggcgcagaacccttgaaacaaggccgtggtggcatacagtagattga 470
Query: 1296 ttgccagccccttgcatgcattttaaacccagtcagaatatcctccgttactgaaccata 1355
| ||| || ||||| ||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 469 tatccaacctcttgcgtgcattttaaacccagtaagaatatcttcagtaactgaaccata 410
Query: 1356 gatccagccaatctcttttccccattcagttttgtcctcatatccacaactgatgacatg 1415
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 409 gatccagccaatctcttttccccattcggttttgtcctcatatccacagctgatgacatg 350
Query: 1416 gatagcttcctttagtagagaagctgggtttgttgaaggtggtatgccaccttgtgtcat 1475
||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 349 gatggcttcctttagtagagaagctgggtttgttgaaggtggtatgcctccttgagtcat 290
Query: 1476 aaaggtggatgcaatgaaaataggagactgaccaaagcgtttctccaatttcctctggga 1535
||||||||||||| | || ||||||||||| ||||| |||||||||||| || |||||||
Sbjct: 289 aaaggtggatgcagtaaatataggagactggccaaatcgtttctccaatctcttctggga 230
Query: 1536 cataagcactgacctttcatcctcgtaaccttcaataccctcttcgatgtcttccatatt 1595
|||||||| |||||||||||||| |||||||| ||||||||||| || |||||||| ||
Sbjct: 229 cataagcatcgacctttcatcctcataaccttctataccctcttctatatcttccatgtt 170
Query: 1596 gaagatgggagctgaagattctgttctcttcataatacggctttgactatccatataact 1655
|||||||||||| ||||| || ||||||||||| || ||| ||| |||||||||| ||
Sbjct: 169 gaagatgggagcagaagactcagttctcttcatcatgcggtttttgttatccatatagct 110
Query: 1656 cttgttctttttcttccttctaccacagcagctcttaataacaatgtttggctccagatc 1715
||||||||||||||| || | ||| ||||||||||||| ||||||||| || |||| |||
Sbjct: 109 cttgttctttttctttctgccaccgcagcagctcttaacaacaatgttaggttccaaatc 50
Query: 1716 agcttcagtcaaaacaggatcgtatccatacaaagcctgtctattgaaa 1764
||| ||||| || |||||||| || |||||||| ||||| || ||||||
Sbjct: 49 agcctcagttaatacaggatcatagccatacaaggcctgcctgttgaaa 1
>gb|BG343963.1|BG343963 HVSMEg0007D23f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0007D23f, mRNA sequence
Length = 786
Score = 745 bits (376), Expect = 0.0
Identities = 662/755 (87%), Gaps = 2/755 (0%)
Strand = Plus / Minus
Query: 883 ccaccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccgctccat 942
||||||| |||||| |||||||| ||||||||||| || || ||||| ||||| ||||||
Sbjct: 767 ccaccaaaaacccagaactgctcgtttctccaccagtcctcgatgccgacaccactccat 708
Query: 943 ctaagctccaatatacca-gtggcaaaaatggaggcgaaaagaagaatgaagaacatccc 1001
| |||||| |||||| |||||||| |||||||| | | |||||| | ||||||||
Sbjct: 707 cgcagctcccntataccccgtggcaaagatggaggcaaccataagaataagcaacatccc 648
Query: 1002 -agcataattgctaatctcaggaatgataaatttattggtaaggaggcagatagcgggaa 1060
|||||| || || ||||| |||||||||||||| ||||| ||||| |||||||| ||||
Sbjct: 647 cagcatagttactgatctcgggaatgataaatttgttggtgaggagacagatagcaggaa 588
Query: 1061 gcacacaataggcaataagcggaatggatgtgattggatatacaatagtgttgatgtaag 1120
||||||||||||| ||||| |||| |||||| |||||||| ||||| |||||||||||||
Sbjct: 587 gcacacaataggcgataagtggaagggatgttattggataaacaatggtgttgatgtaag 528
Query: 1121 ccagcctctccaaaagcttcaatcgtccattgtaaccataccagataggacaatgtctac 1180
||| |||||||| ||| ||||| || ||| |||| |||||||||||||||||||| |
Sbjct: 527 ccatcctctccagaagtttcaaccgcccaccgtaattgtaccagataggacaatgtctgc 468
Query: 1181 taagcagaatttccactgacccaagagcccaacggagcacctgattaagacgatcggaaa 1240
||| ||||||||| ||||||||||||||||| ||||| || ||||| ||||| || || |
Sbjct: 467 taaacagaatttcaactgacccaagagcccaccggagaacttgattgagacggtcagaga 408
Query: 1241 gattgattggtgcagaacccttgaaacaaggtcgtggtggcatgcagtagattgattgcc 1300
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 407 gattgattggcgcagaacccttgaaacaaggtcgtggtggcatgcagtagattgatatcc 348
Query: 1301 agccccttgcatgcattttaaacccagtcagaatatcctccgttactgaaccatagatcc 1360
| || ||||| ||||||||||||||||| |||||||| || || ||||||||||||||||
Sbjct: 347 aacctcttgcgtgcattttaaacccagtaagaatatcttcagtaactgaaccatagatcc 288
Query: 1361 agccaatctcttttccccattcagttttgtcctcatatccacaactgatgacatggatag 1420
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct: 287 agccaatctcttttccccattcggttttgtcctcatatccacagctgatgacatggatgg 228
Query: 1421 cttcctttagtagagaagctgggtttgttgaaggtggtatgccaccttgtgtcataaagg 1480
||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct: 227 cttcctttagtagggaagctgggttcgttgaaggtggtatgcctccttgagtcataaagg 168
Query: 1481 tggatgcaatgaaaataggagactgaccaaagcgtttctccaatttcctctgggacataa 1540
|||||||| | || ||||||||||||||||| |||||||||||| || ||||||||||||
Sbjct: 167 tggatgcagtaaatataggagactgaccaaatcgtttctccaatctcttctgggacataa 108
Query: 1541 gcactgacctttcatcctcgtaaccttcaataccctcttcgatgtcttccatattgaaga 1600
||| |||||||||||||| |||||||| || |||||||| || || ||||| |||||||
Sbjct: 107 gcatggacctttcatcctcataaccttctattccctcttctatatcatccatgttgaaga 48
Query: 1601 tgggagctgaagattctgttctcttcataatacgg 1635
||||||| ||||| || ||||||||||| ||||||
Sbjct: 47 tgggagcagaagactcagttctcttcatcatacgg 13
>gb|CA015150.1|CA015150 HT13H01r HT Hordeum vulgare subsp. vulgare cDNA clone HT13H01
5-PRIME, mRNA sequence
Length = 526
Score = 654 bits (330), Expect = 0.0
Identities = 477/526 (90%)
Strand = Plus / Minus
Query: 2023 gcagatacacgaatcagcgcattcattgcaccagccttcttgtgatgctgaaagcctggt 2082
|||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct: 526 gcagatacgcgaatcagtgcattcattgcaccagccttcttgtgatgctggaaacctggt 467
Query: 2083 ctcttttcacgagagacatagacaagacgtggtaactcatttccatcagtgtcgagccca 2142
|||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| || |||
Sbjct: 466 ctcttttcacgagagacatacacaagccgtggcaactcattaccatcagtgtcaaggcca 407
Query: 2143 ccactgtgccccaagaaaacctgaatcatgccaggatggtccctaggattattcccaggc 2202
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 406 ccactgtgccccaagaacacctgaatcatgccaggatggtccctagggttattcccaggc 347
Query: 2203 catgcagttccatcagccatggtccacccctcttcaggcactttctgtgctttggcaaca 2262
|| || || ||||| |||||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 346 caagcggtgccatcggccatggtccacccctcttcgggcactttttgggctttggcaaca 287
Query: 2263 agggcattgattcttactttgaattcttcatactccctcttcattgcgcgtctttcctta 2322
|| || ||||||| || ||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 286 agtgcgttgattcgtattttaaattcttcatactctctcttcattgctcgcctttccttc 227
Query: 2323 acaaatgaaggttgaattttgtccttcaggtaatctattttttgagcaaagtaaaattct 2382
||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 226 acaaaagaaggctgaattttgtccttcaggtaatctattttttgctgaaagtaaaactct 167
Query: 2383 ggagctcttggttcaatattgtgcttcttacaaaagggaacccactttctagcaaattct 2442
|| || ||||||||||| ||||||||||| || || ||||||||||| ||||||||||||
Sbjct: 166 ggggcccttggttcaatgttgtgcttcttgcagaatggaacccacttcctagcaaattct 107
Query: 2443 gcggtttctgagagagactcaaaagtcagcatagctgaaccatcatcagaaacatagcat 2502
|| ||||||||||| |||||||| |||| |||||| ||||||||||||||||||||||||
Sbjct: 106 gcagtttctgagagcgactcaaacgtcaacatagccgaaccatcatcagaaacatagcat 47
Query: 2503 gacactttgtcaacagggtaatccacagaaagaatggacaaaacag 2548
||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct: 46 gacactttgtcgacagggtaatccacagcaagaatggacagaacag 1
>gb|BQ472793.1|BQ472793 HB01H14r BC Hordeum vulgare subsp. vulgare cDNA clone HB01H14
5-PRIME, mRNA sequence
Length = 586
Score = 650 bits (328), Expect = 0.0
Identities = 511/572 (89%)
Strand = Plus / Minus
Query: 1021 ggaatgataaatttattggtaaggaggcagatagcgggaagcacacaataggcaataagc 1080
||||||||||| || ||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 586 ggaatgataaacttgttggtgaggaggcagatagcaggaagcacacaataggcgataagt 527
Query: 1081 ggaatggatgtgattggatatacaatagtgttgatgtaagccagcctctccaaaagcttc 1140
|| | |||||| |||||||| ||||| |||||||||||||||| |||||||| ||| |||
Sbjct: 526 gggagggatgttattggataaacaatggtgttgatgtaagccaccctctccagaagtttc 467
Query: 1141 aatcgtccattgtaaccataccagataggacaatgtctactaagcagaatttccactgac 1200
|| || ||| |||| |||||||||||||||||||| |||| ||||||||| ||||||
Sbjct: 466 aaccgcccaccgtaattgtaccagataggacaatgtctgctaaacagaatttcaactgac 407
Query: 1201 ccaagagcccaacggagcacctgattaagacgatcggaaagattgattggtgcagaaccc 1260
|| |||||||| || ||||| ||||||||||| || || ||||||||||| |||||||||
Sbjct: 406 ccgagagcccatcgcagcacttgattaagacggtcagacagattgattggcgcagaaccc 347
Query: 1261 ttgaaacaaggtcgtggtggcatgcagtagattgattgccagccccttgcatgcatttta 1320
||||||||||| ||||||||||| |||||||||||| ||| || ||||| |||||||||
Sbjct: 346 ttgaaacaaggccgtggtggcatacagtagattgatatccaacctcttgcgtgcatttta 287
Query: 1321 aacccagtcagaatatcctccgttactgaaccatagatccagccaatctcttttccccat 1380
|||||||| |||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct: 286 aacccagtaagaatatcttcagtaactgaaccatagatccagccaatctcttttccccat 227
Query: 1381 tcagttttgtcctcatatccacaactgatgacatggatagcttcctttagtagagaagct 1440
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 226 tcggttttgtcctcatatccacagctgatgacatggatggcttcctttagtagagaagct 167
Query: 1441 gggtttgttgaaggtggtatgccaccttgtgtcataaaggtggatgcaatgaaaatagga 1500
||||||||||||||||||||||| ||||| |||||||||||||||||| | || ||||||
Sbjct: 166 gggtttgttgaaggtggtatgcctccttgagtcataaaggtggatgcagtaaatatagga 107
Query: 1501 gactgaccaaagcgtttctccaatttcctctgggacataagcactgacctttcatcctcg 1560
||||| ||||| |||||||||||| || ||||||||||||||| ||||||||||||||
Sbjct: 106 gactggccaaatcgtttctccaatctcttctgggacataagcatcgacctttcatcctca 47
Query: 1561 taaccttcaataccctcttcgatgtcttccat 1592
|||||||| ||||||||||| || ||||||||
Sbjct: 46 taaccttctataccctcttctatatcttccat 15
>gb|BI948889.1|BI948889 HVSMEl0011E15f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0011E15f, mRNA sequence
Length = 807
Score = 640 bits (323), Expect = 0.0
Identities = 540/611 (88%), Gaps = 1/611 (0%)
Strand = Plus / Minus
Query: 846 cagaccctggaacactgcgaagagatgggcagaggtgccaccaataaccca-aaactgct 904
|||||||||||||| || || ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 611 cagaccctggaacattgataaaagatgggcagatgtgccaccaataacccagaaactgct 552
Query: 905 catttctccaccaatcttcaatgccaacaccgctccatctaagctccaatataccagtgg 964
| ||||||| ||| || || ||||| ||||| |||||| |||||||||||||| ||||
Sbjct: 551 cgtttctcccccagtcctcgatgccgacaccactccatggcagctccaatatacccgtgg 492
Query: 965 caaaaatggaggcgaaaagaagaatgaagaacatcccagcataattgctaatctcaggaa 1024
|||| |||||||| || | |||||| ||||||||||||||||| || || ||||| ||||
Sbjct: 491 caaagatggaggcaaacataagaataaagaacatcccagcatagttactgatctcgggaa 432
Query: 1025 tgataaatttattggtaaggaggcagatagcgggaagcacacaataggcaataagcggaa 1084
|||||||||| ||||| ||||| |||||||| ||||||||||||||||| ||||| ||||
Sbjct: 431 tgataaatttgttggtgaggagacagatagcaggaagcacacaataggcgataagtggaa 372
Query: 1085 tggatgtgattggatatacaatagtgttgatgtaagccagcctctccaaaagcttcaatc 1144
|||||| |||||||| ||||| |||||||||||||||| |||||||| ||| ||||| |
Sbjct: 371 gggatgttattggataaacaatggtgttgatgtaagccatcctctccagaagtttcaacc 312
Query: 1145 gtccattgtaaccataccagataggacaatgtctactaagcagaatttccactgacccaa 1204
| ||| |||| |||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 311 gcccaccgtaattgtaccagataggacaatgtctgctaaacagaatttcaactgacccaa 252
Query: 1205 gagcccaacggagcacctgattaagacgatcggaaagattgattggtgcagaacccttga 1264
||||||| ||||| || ||||| ||||| || || ||||||||||| |||||||||||||
Sbjct: 251 gagcccaccggagaacttgattgagacggtcagagagattgattggcgcagaacccttga 192
Query: 1265 aacaaggtcgtggtggcatgcagtagattgattgccagccccttgcatgcattttaaacc 1324
|||||||||||||||||||||||||||||||| ||| || ||||| |||||||||||||
Sbjct: 191 aacaaggtcgtggtggcatgcagtagattgatatccaacctcttgcgtgcattttaaacc 132
Query: 1325 cagtcagaatatcctccgttactgaaccatagatccagccaatctcttttccccattcag 1384
|||| |||||||| || || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 131 cagtaagaatatcttcagtaactgaaccatagatccagccaatctcttttccccattcgg 72
Query: 1385 ttttgtcctcatatccacaactgatgacatggatagcttcctttagtagagaagctgggt 1444
||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct: 71 ttttgtcctcatatccacagctgatgacatggatggcttcctttagtagggaagctgggt 12
Query: 1445 ttgttgaaggt 1455
| |||||||||
Sbjct: 11 tcgttgaaggt 1
>gb|BJ453328.1|BJ453328 BJ453328 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak42j03 5', mRNA sequence
Length = 685
Score = 640 bits (323), Expect = 0.0
Identities = 574/658 (87%)
Strand = Plus / Minus
Query: 575 ccatgagacccttgaggaaggggtagagatggaggatcacccagatcgagaagaacagct 634
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 685 ccatgagacccttgaggaaggggtagagatggaggatcacccagattgagaagaagagct 626
Query: 635 ttccaaagagcggaccccaggattggtagccactgttaatggcatacgaaattcctgcca 694
||||||||||||| |||||||||||||| || ||||| ||||| || || || |||||||
Sbjct: 625 ttccaaagagcgggccccaggattggtaaccgctgttgatggcgtatgatatgcctgcca 566
Query: 695 ccattccgaccaggttaatgacaagaacagtggtcggaggaatgagcaaactggtccact 754
|||| || |||||||| || || || || ||||||||||| ||||| | |||||||||||
Sbjct: 565 ccatgcccaccaggttgatcacgaggacggtggtcggagggatgaggagactggtccact 506
Query: 755 tgaacacatatagctcagcaaagtcgccatcctcatcagatgcctttgaggtaactgtga 814
||||||| |||||||| ||||||||||| ||||| || |||||| |||||||| ||||
Sbjct: 505 tgaacacgtatagctctgcaaagtcgccgtcctcgtcgtttgccttggaggtaaccgtga 446
Query: 815 agttggtatcaatcccagccaacactttcagcagaccctggaacactgcgaagagatggg 874
||||||| || |||||||||| ||| || ||||||||||||||||| ||||| |||||||
Sbjct: 445 agttggtgtcgatcccagccagcaccttgagcagaccctggaacaccgcgaaaagatggg 386
Query: 875 cagaggtgccaccaataacccaaaactgctcatttctccaccaatcttcaatgccaacac 934
|||| ||||||||||| |||||||||||||| ||||||||||| || || ||||| ||||
Sbjct: 385 cagacgtgccaccaatgacccaaaactgctcgtttctccaccagtcctcgatgccgacac 326
Query: 935 cgctccatctaagctccaatataccagtggcaaaaatggaggcgaaaagaagaatgaaga 994
| ||||||| ||||||||||||||||||||||||||||| || || | ||||| ||||
Sbjct: 325 cactccatcggagctccaatataccagtggcaaaaatggacgcaaacatgagaataaaga 266
Query: 995 acatcccagcataattgctaatctcaggaatgataaatttattggtaaggaggcagatag 1054
|||||||||||||||| || ||||||||||||||||| || ||||| |||||||||||||
Sbjct: 265 acatcccagcataattactgatctcaggaatgataaacttgttggtgaggaggcagatag 206
Query: 1055 cgggaagcacacaataggcaataagcggaatggatgtgattggatatacaatagtgttga 1114
| || |||||||||||||| ||||| || | |||||| |||||||| ||||| |||||||
Sbjct: 205 cagggagcacacaataggcgataagtgggagggatgttattggataaacaatggtgttga 146
Query: 1115 tgtaagccagcctctccaaaagcttcaatcgtccattgtaaccataccagataggacaat 1174
||||||||| |||||||| ||| ||||| || ||| |||| ||||||||||||||||
Sbjct: 145 tgtaagccaccctctccagaagtttcaaccgcccaccgtaattgtaccagataggacaat 86
Query: 1175 gtctactaagcagaatttccactgacccaagagcccaacggagcacctgattaagacg 1232
|||| |||| ||||||||| |||||||| |||||||| || ||||| | |||||||||
Sbjct: 85 gtctgctaaacagaatttcaactgacccgagagcccatcgcagcacttnattaagacg 28
>gb|BU972673.1|BU972673 HB22G06r BC Hordeum vulgare subsp. vulgare cDNA clone HB22G06
5-PRIME, mRNA sequence
Length = 655
Score = 622 bits (314), Expect = e-176
Identities = 545/622 (87%)
Strand = Plus / Minus
Query: 757 aacacatatagctcagcaaagtcgccatcctcatcagatgcctttgaggtaactgtgaag 816
||||| |||||||| ||||||||||| ||||| || |||||| |||||||| ||||||
Sbjct: 655 aacacgtatagctctgcaaagtcgccgtcctcgtcgtttgccttggaggtaaccgtgaag 596
Query: 817 ttggtatcaatcccagccaacactttcagcagaccctggaacactgcgaagagatgggca 876
||||| || |||||||||| ||| || ||||||||||||||||| ||||| |||||||||
Sbjct: 595 ttggtgtcgatcccagccagcaccttgagcagaccctggaacaccgcgaaaagatgggca 536
Query: 877 gaggtgccaccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccg 936
|| ||||||||||| |||||||||||||| ||||||||||| || || ||||| |||||
Sbjct: 535 gacgtgccaccaatgacccaaaactgctcgtttctccaccagtcctcgatgccgacacca 476
Query: 937 ctccatctaagctccaatataccagtggcaaaaatggaggcgaaaagaagaatgaagaac 996
||||||| ||||||||||||||||||||||||||||| || || | ||||| ||||||
Sbjct: 475 ctccatcggagctccaatataccagtggcaaaaatggacgcaaacatgagaataaagaac 416
Query: 997 atcccagcataattgctaatctcaggaatgataaatttattggtaaggaggcagatagcg 1056
|||||||||||||| || ||||||||||||||||| || ||||| ||||||||||||||
Sbjct: 415 atcccagcataattactgatctcaggaatgataaacttgttggtgaggaggcagatagca 356
Query: 1057 ggaagcacacaataggcaataagcggaatggatgtgattggatatacaatagtgttgatg 1116
||||||||||||||||| ||||| || | |||||| |||||||| ||||| |||||||||
Sbjct: 355 ggaagcacacaataggcgataagtgggagggatgttattggataaacaatggtgttgatg 296
Query: 1117 taagccagcctctccaaaagcttcaatcgtccattgtaaccataccagataggacaatgt 1176
||||||| |||||||| ||| ||||| || ||| |||| ||||||||||||||||||
Sbjct: 295 taagccaccctctccagaagtttcaaccgcccaccgtaattgtaccagataggacaatgt 236
Query: 1177 ctactaagcagaatttccactgacccaagagcccaacggagcacctgattaagacgatcg 1236
|| |||| ||||||||| |||||||| |||||||| || ||||| ||||||||||| ||
Sbjct: 235 ctgctaaacagaatttcaactgacccgagagcccatcgcagcacttgattaagacggtca 176
Query: 1237 gaaagattgattggtgcagaacccttgaaacaaggtcgtggtggcatgcagtagattgat 1296
|| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 175 gacagattgattggcgcagaacccttgaaacaaggccgtggtggcatacagtagattgat 116
Query: 1297 tgccagccccttgcatgcattttaaacccagtcagaatatcctccgttactgaaccatag 1356
||| || ||||| ||||||||||||||||| |||||||| || || ||||||||||||
Sbjct: 115 atccaacctcttgcgtgcattttaaacccagtaagaatatcttcagtaactgaaccatag 56
Query: 1357 atccagccaatctcttttcccc 1378
||||||||||||||||||||||
Sbjct: 55 atccagccaatctcttttcccc 34
>gb|BF064711.2|BF064711 HV_CEb0017G02f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0017G02f, mRNA sequence
Length = 812
Score = 601 bits (303), Expect = e-170
Identities = 654/767 (85%), Gaps = 3/767 (0%)
Strand = Plus / Minus
Query: 574 cccatgagacccttgaggaaggggtagagatggagg-atcacccagatcgagaagaacag 632
||||||| |||||| || ||||| |||| ||||||| |||||||| | |||| || ||
Sbjct: 777 cccatgaaacccttaagaaagggttagaaatggagggatcacccaaaattagaaaaaaag 718
Query: 633 c-tttccaaagagcgga-ccccaggattggtagccactgttaatggcatacgaaattcct 690
| |||||||||||||| |||||||||| ||| || ||||| ||||| || || || |||
Sbjct: 717 cctttccaaagagcggggccccaggatttgtaaccgctgttgatggcgtatgatatgcct 658
Query: 691 gccaccattccgaccaggttaatgacaagaacagtggtcggaggaatgagcaaactggtc 750
|||||||| || |||||||| || || || |||||||||| ||||| | |||||||
Sbjct: 657 gccaccatgcccaccaggttgatcacgaggcggttggtcggagggatgaggagactggtc 598
Query: 751 cacttgaacacatatagctcagcaaagtcgccatcctcatcagatgcctttgaggtaact 810
||||||||||| |||||||| ||||||||||| ||||| || |||||| ||||||||
Sbjct: 597 cacttgaacacgtatagctctgcaaagtcgccgtcctcgtcgtttgccttggaggtaacc 538
Query: 811 gtgaagttggtatcaatcccagccaacactttcagcagaccctggaacactgcgaagaga 870
||||||||||| || |||||||||| ||| || ||||||||||||||||| ||||| |||
Sbjct: 537 gtgaagttggtgtcgatcccagccagcaccttgagcagaccctggaacaccgcgaaaaga 478
Query: 871 tgggcagaggtgccaccaataacccaaaactgctcatttctccaccaatcttcaatgcca 930
|||||||| ||||||||||| |||||||||||||| ||||||||||| || || |||||
Sbjct: 477 tgggcagacgtgccaccaatgacccaaaactgctcgtttctccaccagtcctcgatgccg 418
Query: 931 acaccgctccatctaagctccaatataccagtggcaaaaatggaggcgaaaagaagaatg 990
||||| ||||||| ||||||||||||||||||||||||||||| || || | |||||
Sbjct: 417 acaccactccatcggagctccaatataccagtggcaaaaatggacgcaaacatgagaata 358
Query: 991 aagaacatcccagcataattgctaatctcaggaatgataaatttattggtaaggaggcag 1050
|||||||||||||||||||| || ||||||||||||||||| || ||||| |||||||||
Sbjct: 357 aagaacatcccagcataattactgatctcaggaatgataaacttgttggtgaggaggcag 298
Query: 1051 atagcgggaagcacacaataggcaataagcggaatggatgtgattggatatacaatagtg 1110
||||| || |||||||||||||| ||||| || | |||||| |||||||| ||||| |||
Sbjct: 297 atagcagggagcacacaataggcgataagtgggagggatgttattggataaacaatggtg 238
Query: 1111 ttgatgtaagccagcctctccaaaagcttcaatcgtccattgtaaccataccagatagga 1170
||||||||||||| |||||||| ||| ||||| || ||| |||| ||||||||||||
Sbjct: 237 ttgatgtaagccaccctctccagaagtttcaaccgcccaccgtaattgtaccagatagga 178
Query: 1171 caatgtctactaagcagaatttccactgacccaagagcccaacggagcacctgattaaga 1230
|||||||| |||| ||||||||| |||||||| |||||||| || ||||| |||||||||
Sbjct: 177 caatgtctgctaaacagaatttcaactgacccgagagcccatcgcagcacttgattaaga 118
Query: 1231 cgatcggaaagattgattggtgcagaacccttgaaacaaggtcgtggtggcatgcagtag 1290
|| || || ||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct: 117 cggtcagacagattgattggcgcagaacccttgaaacaaggccgtggtggcatacagtac 58
Query: 1291 attgattgccagccccttgcatgcattttaaacccagtcagaatatc 1337
| |||| ||| || ||||| ||||||||||||||||| ||||||||
Sbjct: 57 actgatatccaacctcttgcgtgcattttaaacccagtaagaatatc 11
>gb|BQ463453.1|BQ463453 HI05F03r HI Hordeum vulgare subsp. vulgare cDNA clone HI05F03
5-PRIME, mRNA sequence
Length = 523
Score = 597 bits (301), Expect = e-168
Identities = 463/517 (89%)
Strand = Plus / Minus
Query: 1187 gaatttccactgacccaagagcccaacggagcacctgattaagacgatcggaaagattga 1246
||||||| |||||||| |||||||| || ||||| ||||||||||| || || |||||||
Sbjct: 523 gaatttcaactgacccgagagcccatcgcagcacttgattaagacggtcagacagattga 464
Query: 1247 ttggtgcagaacccttgaaacaaggtcgtggtggcatgcagtagattgattgccagcccc 1306
|||| |||||||||||||||||||| ||||||||||| |||||||||||| ||| || |
Sbjct: 463 ttggcgcagaacccttgaaacaaggccgtggtggcatacagtagattgatatccaacctc 404
Query: 1307 ttgcatgcattttaaacccagtcagaatatcctccgttactgaaccatagatccagccaa 1366
|||| ||||||||||||||||| |||||||| || || ||||||||||||||||||||||
Sbjct: 403 ttgcgtgcattttaaacccagtaagaatatcttcagtaactgaaccatagatccagccaa 344
Query: 1367 tctcttttccccattcagttttgtcctcatatccacaactgatgacatggatagcttcct 1426
|||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 343 tctcttttccccattcggttttgtcctcatatccacagctgatgacatggatggcttcct 284
Query: 1427 ttagtagagaagctgggtttgttgaaggtggtatgccaccttgtgtcataaaggtggatg 1486
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 283 ttagtagagaagctgggtttgttgaaggtggtatgcctccttgagtcataaaggtggatg 224
Query: 1487 caatgaaaataggagactgaccaaagcgtttctccaatttcctctgggacataagcactg 1546
|| | || ||||||||||| ||||| |||||||||||| || ||||||||||||||| |
Sbjct: 223 cagtaaatataggagactggccaaatcgtttctccaatctcttctgggacataagcatcg 164
Query: 1547 acctttcatcctcgtaaccttcaataccctcttcgatgtcttccatattgaagatgggag 1606
||||||||||||| |||||||| ||||||||||| || |||||||| |||||||||||||
Sbjct: 163 acctttcatcctcataaccttctataccctcttctatatcttccatgttgaagatgggag 104
Query: 1607 ctgaagattctgttctcttcataatacggctttgactatccatataactcttgttctttt 1666
| ||||| || ||||||||||| || ||| ||| |||||||||| |||||||||||||
Sbjct: 103 cagaagactcagttctcttcatcatgcggtttttgttatccatatagctcttgttctttt 44
Query: 1667 tcttccttctaccacagcagctcttaataacaatgtt 1703
|||| || | ||| ||||||||||||| |||||||||
Sbjct: 43 tctttctgccaccgcagcagctcttaacaacaatgtt 7
>gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02G16T 5', mRNA sequence
Length = 700
Score = 593 bits (299), Expect = e-167
Identities = 554/639 (86%)
Strand = Plus / Minus
Query: 426 cgatcagcagttgacgccacattgccccaaggcagcagctttctgtgtcggggagatgaa 485
|||||||||||||||||| || ||||||| |||| | || ||||| || ||| |||||
Sbjct: 653 cgatcagcagttgacgccgcactgccccatggcaacggccttctgggtatcggaaatgaa 594
Query: 486 aggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagacaat 545
||| |||||||||||||| || | ||||||||| || || || ||||| ||||| || ||
Sbjct: 593 agggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaaacgat 534
Query: 546 gacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatg 605
|||||| || || |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 533 gacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtagagatg 474
Query: 606 gaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggtagcc 665
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 473 gaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattggtaacc 414
Query: 666 actgttaatggcatacgaaattcctgccaccattccgaccaggttaatgacaagaacagt 725
||||| ||||| || || || ||||||||||| || |||||||| || || || || ||
Sbjct: 413 gctgttgatggcgtatgatatgcctgccaccatgcccaccaggttgatcacgaggacggt 354
Query: 726 ggtcggaggaatgagcaaactggtccacttgaacacatatagctcagcaaagtcgccatc 785
||||||||| ||||| | |||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 353 ggtcggagggatgaggagactggtccacttgaacacgtatagctctgcaaagtcgccgtc 294
Query: 786 ctcatcagatgcctttgaggtaactgtgaagttggtatcaatcccagccaacactttcag 845
||| || |||||| |||||||| ||||||||||| || |||||||||| ||| || ||
Sbjct: 293 ctcgtcgtttgccttggaggtaaccgtgaagttggtgtcgatcccagccagcaccttgag 234
Query: 846 cagaccctggaacactgcgaagagatgggcagaggtgccaccaataacccaaaactgctc 905
||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct: 233 cagaccctggaacaccgcgaaaagatgggcagacgtgccaccaatgacccaaaactgctc 174
Query: 906 atttctccaccaatcttcaatgccaacaccgctccatctaagctccaatataccagtggc 965
||||||||||| || || ||||| ||||| ||||||| ||||||||||||||||||||
Sbjct: 173 gtttctccaccagtcctcgatgccgacaccactccatcggagctccaatataccagtggc 114
Query: 966 aaaaatggaggcgaaaagaagaatgaagaacatcccagcataattgctaatctcaggaat 1025
||||||||| || || | ||||| |||||||||||||||||||| || |||||||||||
Sbjct: 113 aaaaatggacgcaaacatgagaataaagaacatcccagcataattactgatctcaggaat 54
Query: 1026 gataaatttattggtaaggaggcagatagcgggaagcac 1064
|||||| || ||||| |||||||||||||| ||||||||
Sbjct: 53 gataaacttgttggtgaggaggcagatagcaggaagcac 15
>gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
5-PRIME, mRNA sequence
Length = 617
Score = 575 bits (290), Expect = e-162
Identities = 519/594 (87%), Gaps = 1/594 (0%)
Strand = Plus / Minus
Query: 481 atgaaaggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccag 540
|||||||| |||||||||||||| || | ||||||||| || || || ||||| |||||
Sbjct: 606 atgaaagggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaa 547
Query: 541 acaatgacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtag 600
|| |||||||| || || |||||||||||| | |||||||||||||||||||||||||||
Sbjct: 546 acgatgacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtag 487
Query: 601 agatggaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattgg 660
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 486 agatggaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattgg 427
Query: 661 tagccactgttaatggcatacgaaattcctgccaccattccgaccaggttaatgacaaga 720
|| || ||||| ||||| || || || ||||||||||| || |||||||| || || ||
Sbjct: 426 taaccgctgttgatggcgtatgatatgcctgccaccatgcccaccaggttgatcacgagg 367
Query: 721 acagtggtcggaggaatgagcaaactggtccacttgaacacatatagctcagcaaagtcg 780
|| ||||||||||| ||||| | |||||||||||||||||| |||||||| |||||||||
Sbjct: 366 acggtggtcggagggatgaggagactggtccacttgaacacgtatagctctgcaaagtcg 307
Query: 781 ccatcctcatcagatgcctttgaggtaactgtgaagttggtatcaatcccagccaacact 840
|| ||||| || |||||| |||||||| ||||||||||| || |||||||||| |||
Sbjct: 306 ccgtcctcgtcgtttgccttggaggtaaccgtgaagttggtgtcgatcccagccagcacc 247
Query: 841 ttcagcagaccctggaacactgcgaagagatgggcagaggtgccaccaataacccaaaac 900
|| ||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 246 ttgagcagaccctggaacaccgcgaaaagatgggcagacgtgccaccaatgacccaaaac 187
Query: 901 tgctcatttctccaccaatcttcaatgccaacaccgctccatctaagctccaatatacca 960
||||| ||||||||||| || || ||||| ||||| ||||||| |||||||||||||||
Sbjct: 186 tgctcgtttctccaccagtcctcgatgccgacaccactccatcggagctccaatatacca 127
Query: 961 gtggcaaaaatggaggcgaaaagaagaatgaagaacatcccagcataattgctaatctca 1020
|||||||||||||| || || | ||||| |||||||||||||||||||| || ||||||
Sbjct: 126 gtggcaaaaatggacgcaaacatgagaataaagaacatcccagcataattactgatctca 67
Query: 1021 ggaatgataaatttattggtaaggaggcagata-gcgggaagcacacaataggc 1073
||||||||||| || ||||| |||||||||||| || |||||||||||||||||
Sbjct: 66 ggaatgataaacttgttggtgaggaggcagatangcaggaagcacacaataggc 13
>gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
5-PRIME, mRNA sequence
Length = 638
Score = 575 bits (290), Expect = e-162
Identities = 519/594 (87%), Gaps = 1/594 (0%)
Strand = Plus / Minus
Query: 481 atgaaaggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccag 540
|||||||| |||||||||||||| || | ||||||||| || || || ||||| |||||
Sbjct: 606 atgaaagggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaa 547
Query: 541 acaatgacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtag 600
|| |||||||| || || |||||||||||| | |||||||||||||||||||||||||||
Sbjct: 546 acgatgacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtag 487
Query: 601 agatggaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattgg 660
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 486 agatggaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattgg 427
Query: 661 tagccactgttaatggcatacgaaattcctgccaccattccgaccaggttaatgacaaga 720
|| || ||||| ||||| || || || ||||||||||| || |||||||| || || ||
Sbjct: 426 taaccgctgttgatggcgtatgatatgcctgccaccatgcccaccaggttgatcacgagg 367
Query: 721 acagtggtcggaggaatgagcaaactggtccacttgaacacatatagctcagcaaagtcg 780
|| ||||||||||| ||||| | |||||||||||||||||| |||||||| |||||||||
Sbjct: 366 acggtggtcggagggatgaggagactggtccacttgaacacgtatagctctgcaaagtcg 307
Query: 781 ccatcctcatcagatgcctttgaggtaactgtgaagttggtatcaatcccagccaacact 840
|| ||||| || |||||| |||||||| ||||||||||| || |||||||||| |||
Sbjct: 306 ccgtcctcgtcgtttgccttggaggtaaccgtgaagttggtgtcgatcccagccagcacc 247
Query: 841 ttcagcagaccctggaacactgcgaagagatgggcagaggtgccaccaataacccaaaac 900
|| ||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 246 ttgagcagaccctggaacaccgcgaaaagatgggcagacgtgccaccaatgacccaaaac 187
Query: 901 tgctcatttctccaccaatcttcaatgccaacaccgctccatctaagctccaatatacca 960
||||| ||||||||||| || || ||||| ||||| ||||||| |||||||||||||||
Sbjct: 186 tgctcgtttctccaccagtcctcgatgccgacaccactccatcggagctccaatatacca 127
Query: 961 gtggcaaaaatggaggcgaaaagaagaatgaagaacatcccagcataattgctaatctca 1020
|||||||||||||| || || | ||||| |||||||||||||||||||| || ||||||
Sbjct: 126 gtggcaaaaatggacgcaaacatgagaataaagaacatcccagcataattactgatctca 67
Query: 1021 ggaatgataaatttattggtaaggaggcagat-agcgggaagcacacaataggc 1073
||||||||||| || ||||| ||||||||||| ||| |||||||||||||||||
Sbjct: 66 ggaatgataaacttgttggtgaggaggcagataagcaggaagcacacaataggc 13
>gb|AV836384.1|AV836384 AV836384 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum vulgare
subsp. vulgare cDNA clone basd20p06, mRNA sequence
Length = 473
Score = 573 bits (289), Expect = e-161
Identities = 419/461 (90%), Gaps = 1/461 (0%)
Strand = Plus / Minus
Query: 1649 tataactcttgttctttttcttccttctaccacagcagctcttaataacaatgtttggct 1708
|||| ||||||||||||||||| || | ||| ||||||||||||| ||||||||| || |
Sbjct: 473 tatagctcttgttctttttctttctgccaccgcagcagctcttaacaacaatgttaggtt 414
Query: 1709 ccagatcagcttcagtcaaaacaggatcgtatccatacaaagcctgtctattgaaacagc 1768
||| |||||| ||||| || |||||||| || |||||||| ||||| || ||||||||||
Sbjct: 413 ccaaatcagcctcagttaatacaggatcatagccatacaaggcctgcctgttgaaacagc 354
Query: 1769 atcctgttcccacgtaaactggaccctgaatgccatccagacctttcatgttgatatcaa 1828
||||||| || || || | |||||||||||||||||| | ||||||||||||||||||||
Sbjct: 353 atcctgtcccgacatacattggaccctgaatgccatctaaacctttcatgttgatatcaa 294
Query: 1829 agaaaactatgttccgattagcatatcgatcgtgcaagtcaatgccatcaaatctctgtg 1888
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 293 agaaaactatgttgcgattagcatatcgatcgtgcaaatcaatgccatcaaatctttgtg 234
Query: 1889 gaaattgtacataacaagttttccttcctagagccggatccatcatgaagcacattgctt 1948
||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 233 gaaattggacatagcaagtcttccttcctagagcgggatccatcatgaagcacattgctt 174
Query: 1949 ctctaagagctttgctgctattgaagtaatggtcgcaatccacattgagaagataggcac 2008
|||||||||||||||||||||||||||| || || ||||||||||| |||||||||||||
Sbjct: 173 ctctaagagctttgctgctattgaagtagtgatcacaatccacattaagaagataggcac 114
Query: 2009 catttgtcagcacagcagatacacgaatcagcgcattcattgcaccagccttcttgtgat 2068
||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 113 catttgtcaacacagcagatacgcgaatcagtgcattcattgcaccagccttcttgtgat 54
Query: 2069 gctgaaagcctggtct-cttttcacgagagacatagacaag 2108
|||| || |||||||| |||||||||||||||||| |||||
Sbjct: 53 gctggaaacctggtctacttttcacgagagacatacacaag 13
>gb|BM376392.2|BM376392 EBem05_SQ002_B14_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_B14 5', mRNA sequence
Length = 555
Score = 551 bits (278), Expect = e-155
Identities = 485/554 (87%)
Strand = Plus / Minus
Query: 658 tggtagccactgttaatggcatacgaaattcctgccaccattccgaccaggttaatgaca 717
||||| || ||||| |||||||| || || ||||||||||| || ||||||||||| |||
Sbjct: 555 tggtaaccgctgttgatggcatatgatatgcctgccaccatgcccaccaggttaatcaca 496
Query: 718 agaacagtggtcggaggaatgagcaaactggtccacttgaacacatatagctcagcaaag 777
|| || ||||||||||||||||| | |||||||||||||||||| |||| |||||||||
Sbjct: 495 aggacggtggtcggaggaatgaggagactggtccacttgaacacgtataactcagcaaaa 436
Query: 778 tcgccatcctcatcagatgcctttgaggtaactgtgaagttggtatcaatcccagccaac 837
||||||||||| || |||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct: 435 tcgccatcctcgtcgtttgccttcgaggtaaccgtgaagttggtgtcaatcccggccaac 376
Query: 838 actttcagcagaccctggaacactgcgaagagatgggcagaggtgccaccaataacccaa 897
|| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 375 accttcagcagaccctggaacactgcgaaaagatgggcagatgtgccaccaataacccag 316
Query: 898 aactgctcatttctccaccaatcttcaatgccaacaccgctccatctaagctccaatata 957
|||||||| ||||||||||| || || ||||| ||||| ||||||| ||||||||||||
Sbjct: 315 aactgctcgtttctccaccagtcctcgatgccgacaccactccatcgcagctccaatata 256
Query: 958 ccagtggcaaaaatggaggcgaaaagaagaatgaagaacatcccagcataattgctaatc 1017
|| |||||||| |||||||| || | |||||| ||||||||||||||||| || || |||
Sbjct: 255 cccgtggcaaagatggaggcaaacataagaataaagaacatcccagcatagttactgatc 196
Query: 1018 tcaggaatgataaatttattggtaaggaggcagatagcgggaagcacacaataggcaata 1077
|| |||||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||
Sbjct: 195 tcgggaatgataaatttgttggtgaggagacagatagcaggaagcacacaataggcgata 136
Query: 1078 agcggaatggatgtgattggatatacaatagtgttgatgtaagccagcctctccaaaagc 1137
|| |||| |||||| |||||||| ||||| |||||||||||||||| |||||||| |||
Sbjct: 135 agtggaagggatgttattggataaacaatggtgttgatgtaagccatcctctccagaagt 76
Query: 1138 ttcaatcgtccattgtaaccataccagataggacaatgtctactaagcagaatttccact 1197
||||| || ||| |||| |||||||||||||||||||| |||| ||||||||| |||
Sbjct: 75 ttcaaccgcccaccgtaattgtaccagataggacaatgtctgctaaacagaatttcaact 16
Query: 1198 gacccaagagccca 1211
||||||||||||||
Sbjct: 15 gacccaagagccca 2
>gb|AL505797.1|AL505797 AL505797 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09I21V 5', mRNA sequence
Length = 499
Score = 547 bits (276), Expect = e-154
Identities = 415/460 (90%), Gaps = 1/460 (0%)
Strand = Plus / Minus
Query: 1170 acaatgtctactaagca-gaatttccactgacccaagagcccaacggagcacctgattaa 1228
||||||||| |||| || ||||||| |||||||| |||||||| || ||||| |||||||
Sbjct: 499 acaatgtctgctaaacaagaatttcaactgacccgagagcccatcgcagcacttgattaa 440
Query: 1229 gacgatcggaaagattgattggtgcagaacccttgaaacaaggtcgtggtggcatgcagt 1288
|||| || || ||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct: 439 gacggtcagacagattgattggcgcagaacccttgaaacaaggccgtggtggcatacagt 380
Query: 1289 agattgattgccagccccttgcatgcattttaaacccagtcagaatatcctccgttactg 1348
|||||||| ||| || ||||| ||||||||||||||||| |||||||| || || ||||
Sbjct: 379 agattgatatccaacctcttgcgtgcattttaaacccagtaagaatatcttcagtaactg 320
Query: 1349 aaccatagatccagccaatctcttttccccattcagttttgtcctcatatccacaactga 1408
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 319 aaccatagatccagccaatctcttttccccattcggttttgtcctcatatccacagctga 260
Query: 1409 tgacatggatagcttcctttagtagagaagctgggtttgttgaaggtggtatgccacctt 1468
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 259 tgacatggatggcttcctttagtagagaagctgggtttgttgaaggtggtatgcctcctt 200
Query: 1469 gtgtcataaaggtggatgcaatgaaaataggagactgaccaaagcgtttctccaatttcc 1528
| |||||||||||||||||| | || ||||||||||| ||||| |||||||||||| ||
Sbjct: 199 gagtcataaaggtggatgcagtaaatataggagactggccaaatcgtttctccaatctct 140
Query: 1529 tctgggacataagcactgacctttcatcctcgtaaccttcaataccctcttcgatgtctt 1588
||||||||||||||| |||||||||||||| |||||||| ||||||||||| || ||||
Sbjct: 139 tctgggacataagcatcgacctttcatcctcataaccttctataccctcttctatatctt 80
Query: 1589 ccatattgaagatgggagctgaagattctgttctcttcat 1628
|||| |||||||||||||| ||||| || |||||||||||
Sbjct: 79 ccatgttgaagatgggagcagaagactcagttctcttcat 40
>gb|BF258638.2|BF258638 HVSMEf0016E13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0016E13f, mRNA sequence
Length = 578
Score = 547 bits (276), Expect = e-154
Identities = 502/576 (87%), Gaps = 1/576 (0%)
Strand = Plus / Minus
Query: 609 gatcacccagatcgagaagaacagctttccaaaga-gcggaccccaggattggtagccac 667
||||||| |||| |||||||| |||||||| |||| | |||||||| || ||||| || |
Sbjct: 577 gatcaccgagattgagaagaagagctttccgaagaagtggaccccaagactggtaaccgc 518
Query: 668 tgttaatggcatacgaaattcctgccaccattccgaccaggttaatgacaagaacagtgg 727
|||| |||||||| || || ||||||||||| || ||||||||||| ||||| || ||||
Sbjct: 517 tgttgatggcatatgatatgcctgccaccatgcccaccaggttaatcacaaggacggtgg 458
Query: 728 tcggaggaatgagcaaactggtccacttgaacacatatagctcagcaaagtcgccatcct 787
||||||||||||| | |||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 457 tcggaggaatgaggagactggtccacttgaacacgtataactcagcaaaatcgccatcct 398
Query: 788 catcagatgcctttgaggtaactgtgaagttggtatcaatcccagccaacactttcagca 847
| || |||||| |||||||| ||||||||||| |||||||| |||||||| |||||||
Sbjct: 397 cgtcgtttgccttcgaggtaaccgtgaagttggtgtcaatcccggccaacaccttcagca 338
Query: 848 gaccctggaacactgcgaagagatgggcagaggtgccaccaataacccaaaactgctcat 907
||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 337 gaccctggaacactgcgaaaagatgggcagatgtgccaccaataacccagaactgctcgt 278
Query: 908 ttctccaccaatcttcaatgccaacaccgctccatctaagctccaatataccagtggcaa 967
|||||||||| || || ||||| ||||| ||||||| |||||||||||||| |||||||
Sbjct: 277 ttctccaccagtcctcgatgccgacaccactccatcgcagctccaatatacccgtggcaa 218
Query: 968 aaatggaggcgaaaagaagaatgaagaacatcccagcataattgctaatctcaggaatga 1027
| ||||||||||| | |||||| ||||||||||||||||| || || ||||| |||||||
Sbjct: 217 agatggaggcgaacataagaataaagaacatcccagcatagttactgatctcgggaatga 158
Query: 1028 taaatttattggtaaggaggcagatagcgggaagcacacaataggcaataagcggaatgg 1087
||||||| ||||| ||||| |||||||| ||||||||||||||||| ||||| |||| ||
Sbjct: 157 taaatttgttggtgaggagacagatagcaggaagcacacaataggcgataagtggaaggg 98
Query: 1088 atgtgattggatatacaatagtgttgatgtaagccagcctctccaaaagcttcaatcgtc 1147
|||| |||||||| ||||| |||||||||||||||| |||||||| ||| ||||| || |
Sbjct: 97 atgttattggataaacaatggtgttgatgtaagccatcctctccagaagtttcaaccgcc 38
Query: 1148 cattgtaaccataccagataggacaatgtctactaa 1183
|| |||| |||||||||||||||||||| ||||
Sbjct: 37 caccgtaattgtaccagataggacaatgtctgctaa 2
>gb|BE214667.2|BE214667 HV_CEb0004C10f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0004C10f, mRNA sequence
Length = 636
Score = 519 bits (262), Expect = e-145
Identities = 504/579 (87%), Gaps = 5/579 (0%)
Strand = Plus / Minus
Query: 949 tccaatataccagtggcaaaaa-tggaggcgaaaagaagaatgaagaacatcccagcata 1007
|||| ||||||||||||||||| ||| ||| | | ||||| |||||||||||||||||
Sbjct: 600 tccattataccagtggcaaaaaatggcggcaaccatgagaataaagaacatcccagcata 541
Query: 1008 attgctaatctcaggaatgataaatttattggtaaggaggcagatagcgggaagcacaca 1067
||| | ||||||||||||||| || | | | || ||||||||||| || ||||||||
Sbjct: 540 attcttgttctcaggaatgataacttggtggttgagnaggcagatagcagggagcacaca 481
Query: 1068 ataggcaataagcggaatggatgtgattgg-atatacaatag-tgttgatgtaagccagc 1125
|||||| ||| | ||| |||||| ||||| ||| ||||| | ||||||||||||||| |
Sbjct: 480 ataggcgata-gtggannggatgttattgggata-acaatgggtgttgatgtaagccacc 423
Query: 1126 ctctccaaaagcttcaatcgtccattgtaaccataccagataggacaatgtctactaagc 1185
||||||| ||| |||| || ||| |||| |||||||||||||||||||| |||| |
Sbjct: 422 ctctccagaagtttcacccgcccaccgtaattgtaccagataggacaatgtctgctaaac 363
Query: 1186 agaatttccactgacccaagagcccaacggagcacctgattaagacgatcggaaagattg 1245
|||||||| |||||||| |||||||| || ||||| ||||||||||| || || ||||||
Sbjct: 362 agaatttcaactgacccgagagcccatcgcagcacttgattaagacggtcagacagattg 303
Query: 1246 attggtgcagaacccttgaaacaaggtcgtggtggcatgcagtagattgattgccagccc 1305
||||| |||||||||||||||||||| ||||||||||| |||||||||||| ||| ||
Sbjct: 302 attggcgcagaacccttgaaacaaggccgtggtggcatacagtagattgatatccaacct 243
Query: 1306 cttgcatgcattttaaacccagtcagaatatcctccgttactgaaccatagatccagcca 1365
||||| ||||||||||||||||| |||||||| || || |||||||||||||||||||||
Sbjct: 242 cttgcgtgcattttaaacccagtaagaatatcttcagtaactgaaccatagatccagcca 183
Query: 1366 atctcttttccccattcagttttgtcctcatatccacaactgatgacatggatagcttcc 1425
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 182 atctcttttccccattcggttttgtcctcatatccacagctgatgacatggatggcttcc 123
Query: 1426 tttagtagagaagctgggtttgttgaaggtggtatgccaccttgtgtcataaaggtggat 1485
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 122 tttagtagagaagctgggtttgttgaaggtggtatgcctccttgagtcataaaggtggat 63
Query: 1486 gcaatgaaaataggagactgaccaaagcgtttctccaat 1524
||| | || ||||||||||| ||||| ||||||||||||
Sbjct: 62 gcagtaaatataggagactggccaaatcgtttctccaat 24
>gb|BU985115.1|BU985115 HF06C19r HF Hordeum vulgare subsp. vulgare cDNA clone HF06C19
5-PRIME, mRNA sequence
Length = 548
Score = 490 bits (247), Expect = e-136
Identities = 454/523 (86%)
Strand = Plus / Minus
Query: 688 cctgccaccattccgaccaggttaatgacaagaacagtggtcggaggaatgagcaaactg 747
||||||||||| || |||||||| || || || || ||||||||||| ||||| | ||||
Sbjct: 532 cctgccaccatgcccaccaggttgatcacgaggacggtggtcggagggatgaggagactg 473
Query: 748 gtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgcctttgaggta 807
|||||||||||||| |||||||| ||||||||||| ||||| || |||||| ||||||
Sbjct: 472 gtccacttgaacacgtatagctctgcaaagtcgccgtcctcgtcgtttgccttggaggta 413
Query: 808 actgtgaagttggtatcaatcccagccaacactttcagcagaccctggaacactgcgaag 867
|| ||||||||||| || |||||||||| ||| || ||||||||||||||||| |||||
Sbjct: 412 accgtgaagttggtgtcgatcccagccagcaccttgagcagaccctggaacaccgcgaaa 353
Query: 868 agatgggcagaggtgccaccaataacccaaaactgctcatttctccaccaatcttcaatg 927
||||||||||| ||||||||||| |||||||||||||| ||||||||||| || || |||
Sbjct: 352 agatgggcagacgtgccaccaatgacccaaaactgctcgtttctccaccagtcctcgatg 293
Query: 928 ccaacaccgctccatctaagctccaatataccagtggcaaaaatggaggcgaaaagaaga 987
|| ||||| ||||||| ||||||||||||||||||||||||||||| || || | |||
Sbjct: 292 ccgacaccactccatcggagctccaatataccagtggcaaaaatggacgcaaacatgaga 233
Query: 988 atgaagaacatcccagcataattgctaatctcaggaatgataaatttattggtaaggagg 1047
|| |||||||||||||||||||| || ||||||||||||||||| || ||||| ||||||
Sbjct: 232 ataaagaacatcccagcataattactgatctcaggaatgataaacttgttggtgaggagg 173
Query: 1048 cagatagcgggaagcacacaataggcaataagcggaatggatgtgattggatatacaata 1107
|||||||| ||||||||||||||||| ||||| || | |||||| |||||||| |||||
Sbjct: 172 cagatagcaggaagcacacaataggcgataagtgggagggatgttattggataaacaatg 113
Query: 1108 gtgttgatgtaagccagcctctccaaaagcttcaatcgtccattgtaaccataccagata 1167
|||||||||||||||| |||||||| ||| ||||| || ||| |||| |||||||||
Sbjct: 112 gtgttgatgtaagccaccctctccagaagtttcaaccgcccaccgtaattgtaccagata 53
Query: 1168 ggacaatgtctactaagcagaatttccactgacccaagagccc 1210
||||||||||| |||| ||||||||| |||||||| |||||||
Sbjct: 52 ggacaatgtctgctaaacagaatttcaactgacccgagagccc 10
>gb|BQ467842.1|BQ467842 HR01B16r HR Hordeum vulgare subsp. vulgare cDNA clone HR01B16
5-PRIME, mRNA sequence
Length = 498
Score = 450 bits (227), Expect = e-124
Identities = 422/487 (86%)
Strand = Plus / Minus
Query: 656 attggtagccactgttaatggcatacgaaattcctgccaccattccgaccaggttaatga 715
||||||| || ||||| ||||| || || || ||||||||||| || |||||||| || |
Sbjct: 498 attggtaaccgctgttgatggcgtatgatatgcctgccaccatgcccaccaggttgatca 439
Query: 716 caagaacagtggtcggaggaatgagcaaactggtccacttgaacacatatagctcagcaa 775
| || || ||||||||||| ||||| | |||||||||||||||||| |||||||| ||||
Sbjct: 438 cgaggacggtggtcggagggatgaggagactggtccacttgaacacgtatagctctgcaa 379
Query: 776 agtcgccatcctcatcagatgcctttgaggtaactgtgaagttggtatcaatcccagcca 835
||||||| ||||| || |||||| |||||||| ||||||||||| || ||||||||||
Sbjct: 378 agtcgccgtcctcgtcgtttgccttggaggtaaccgtgaagttggtgtcgatcccagcca 319
Query: 836 acactttcagcagaccctggaacactgcgaagagatgggcagaggtgccaccaataaccc 895
||| || ||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||
Sbjct: 318 gcaccttgagcagaccctggaacaccgcgaaaagatgggcagacgtgccaccaatgaccc 259
Query: 896 aaaactgctcatttctccaccaatcttcaatgccaacaccgctccatctaagctccaata 955
|||||||||| ||||||||||| || || ||||| ||||| ||||||| ||||||||||
Sbjct: 258 aaaactgctcgtttctccaccagtcctcgatgccgacaccactccatcggagctccaata 199
Query: 956 taccagtggcaaaaatggaggcgaaaagaagaatgaagaacatcccagcataattgctaa 1015
||||||||||||||||||| || || | ||||| |||||||||||||||||||| || |
Sbjct: 198 taccagtggcaaaaatggacgcaaacatgagaataaagaacatcccagcataattactga 139
Query: 1016 tctcaggaatgataaatttattggtaaggaggcagatagcgggaagcacacaataggcaa 1075
|||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||| |
Sbjct: 138 tctcaggaatgataaacttgttggtgaggaggcagatagcaggaagcacacaataggcga 79
Query: 1076 taagcggaatggatgtgattggatatacaatagtgttgatgtaagccagcctctccaaaa 1135
|||| || | |||||| |||||||| ||||| |||||||||||||||| |||||||| ||
Sbjct: 78 taagtgggagggatgttattggataaacaatggtgttgatgtaagccaccctctccagaa 19
Query: 1136 gcttcaa 1142
| |||||
Sbjct: 18 gtttcaa 12
>gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. vulgare cDNA clone HI05F03
3-PRIME, mRNA sequence
Length = 539
Score = 353 bits (178), Expect = 3e-095
Identities = 352/410 (85%)
Strand = Plus / Plus
Query: 426 cgatcagcagttgacgccacattgccccaaggcagcagctttctgtgtcggggagatgaa 485
|||||||||||||||||| || ||||||| |||| | || ||||| || ||| |||||
Sbjct: 120 cgatcagcagttgacgccgcactgccccatggcaacggccttctgggtatcggaaatgaa 179
Query: 486 aggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagacaat 545
||| |||||||||||||| || | ||||||||| || || || ||||| ||||| || ||
Sbjct: 180 agggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaaacgat 239
Query: 546 gacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatg 605
|||||| || || |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 240 gacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtagagatg 299
Query: 606 gaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggtagcc 665
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 300 gaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattggtaacc 359
Query: 666 actgttaatggcatacgaaattcctgccaccattccgaccaggttaatgacaagaacagt 725
||||| ||||| || || || ||||||||||| || |||||||| || || || || ||
Sbjct: 360 gctgttgatggcgtatgatatgcctgccaccatgcccaccaggttgatcacgaggacggt 419
Query: 726 ggtcggaggaatgagcaaactggtccacttgaacacatatagctcagcaaagtcgccatc 785
||||||||| ||||| | |||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 420 ggtcggagggatgaggagactggtccacttgaacacgtatagctctgcaaagtcgccgtc 479
Query: 786 ctcatcagatgcctttgaggtaactgtgaagttggtatcaatcccagcca 835
||| || |||||| |||||||| ||||||||||| || ||||||||||
Sbjct: 480 ctcgtcgtttgccttggaggtaaccgtgaagttggtgtcgatcccagcca 529
>gb|BU969975.1|BU969975 HB13D11r BC Hordeum vulgare subsp. vulgare cDNA clone HB13D11
5-PRIME, mRNA sequence
Length = 348
Score = 329 bits (166), Expect = 4e-088
Identities = 292/334 (87%)
Strand = Plus / Minus
Query: 985 agaatgaagaacatcccagcataattgctaatctcaggaatgataaatttattggtaagg 1044
||||| |||||||||||||||||||| || ||||||||||||||||| || ||||| |||
Sbjct: 344 agaataaagaacatcccagcataattactgatctcaggaatgataaacttgttggtgagg 285
Query: 1045 aggcagatagcgggaagcacacaataggcaataagcggaatggatgtgattggatataca 1104
||||||||||| ||||||||||||||||| ||||| || | |||||| |||||||| |||
Sbjct: 284 aggcagatagcaggaagcacacaataggcgataagtgggagggatgttattggataaaca 225
Query: 1105 atagtgttgatgtaagccagcctctccaaaagcttcaatcgtccattgtaaccataccag 1164
|| |||||||||||||||| |||||||| ||| ||||| || ||| |||| ||||||
Sbjct: 224 atggtgttgatgtaagccaccctctccagaagtttcaaccgcccaccgtaattgtaccag 165
Query: 1165 ataggacaatgtctactaagcagaatttccactgacccaagagcccaacggagcacctga 1224
|||||||||||||| |||| ||||||||| |||||||| |||||||| || ||||| |||
Sbjct: 164 ataggacaatgtctgctaaacagaatttcaactgacccgagagcccatcgcagcacttga 105
Query: 1225 ttaagacgatcggaaagattgattggtgcagaacccttgaaacaaggtcgtggtggcatg 1284
|||||||| || || ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 104 ttaagacggtcagacagattgattggcgcagaacccttgaaacaaggccgtggtggcata 45
Query: 1285 cagtagattgattgccagccccttgcatgcattt 1318
|||||||||||| ||| || ||||| |||||||
Sbjct: 44 cagtagattgatatccaacctcttgcgtgcattt 11
>gb|BQ469740.1|BQ469740 HZ01L16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01L16
5-PRIME, mRNA sequence
Length = 403
Score = 315 bits (159), Expect = 6e-084
Identities = 276/315 (87%)
Strand = Plus / Minus
Query: 426 cgatcagcagttgacgccacattgccccaaggcagcagctttctgtgtcggggagatgaa 485
||||||||||||||||||||| ||||||| ||| | |||||||| || ||| |||||
Sbjct: 332 cgatcagcagttgacgccacactgccccatggcgacggctttctgggtatcggatatgaa 273
Query: 486 aggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagacaat 545
||| ||||||||||||||||| | ||||||||| || || || ||||||||||| |||||
Sbjct: 272 agggtcgatcttcacccacaggagggagaagatggaggctaggaggatggaccaaacaat 213
Query: 546 gacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatg 605
|||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 212 gacgatggttggcgtgcggttctgcttccccatgagacccttgaggaaggggtagagatg 153
Query: 606 gaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggtagcc 665
||||||||||||||| |||||||| |||||||| ||||| |||||||| || ||||| ||
Sbjct: 152 gaggatcacccagattgagaagaagagctttccgaagagtggaccccaagactggtaacc 93
Query: 666 actgttaatggcatacgaaattcctgccaccattccgaccaggttaatgacaagaacagt 725
||||| |||||||| || || ||||||||||| || ||||||||||| ||||| || ||
Sbjct: 92 gctgttgatggcatatgatatgcctgccaccatgcccaccaggttaatcacaaggacggt 33
Query: 726 ggtcggaggaatgag 740
|||||||||||||||
Sbjct: 32 ggtcggaggaatgag 18
>gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
3-PRIME, mRNA sequence
Length = 654
Score = 315 bits (159), Expect = 6e-084
Identities = 306/355 (86%)
Strand = Plus / Plus
Query: 426 cgatcagcagttgacgccacattgccccaaggcagcagctttctgtgtcggggagatgaa 485
|||||||||||||||||| || ||||||| |||| | || ||||| || ||| |||||
Sbjct: 300 cgatcagcagttgacgccgcactgccccatggcaacggccttctgggtatcggaaatgaa 359
Query: 486 aggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagacaat 545
||| |||||||||||||| || | ||||||||| || || || ||||| ||||| || ||
Sbjct: 360 agggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaaacgat 419
Query: 546 gacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatg 605
|||||| || || |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 420 gacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtagagatg 479
Query: 606 gaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggtagcc 665
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 480 gaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattggtaacc 539
Query: 666 actgttaatggcatacgaaattcctgccaccattccgaccaggttaatgacaagaacagt 725
||||| ||||| || || || ||||||||||| || |||||||| || || || || ||
Sbjct: 540 gctgttgatggcgtatgatatgcctgccaccatgcccaccaggttgatcacgaggacggt 599
Query: 726 ggtcggaggaatgagcaaactggtccacttgaacacatatagctcagcaaagtcg 780
||||||||| ||||| | |||||||||||||||||| |||||||| |||||||||
Sbjct: 600 ggtcggagggatgaggagactggtccacttgaacacgtatagctctgcaaagtcg 654
>gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
3-PRIME, mRNA sequence
Length = 652
Score = 313 bits (158), Expect = 2e-083
Identities = 305/354 (86%)
Strand = Plus / Plus
Query: 426 cgatcagcagttgacgccacattgccccaaggcagcagctttctgtgtcggggagatgaa 485
|||||||||||||||||| || ||||||| |||| | || ||||| || ||| |||||
Sbjct: 299 cgatcagcagttgacgccgcactgccccatggcaacggccttctgggtatcggaaatgaa 358
Query: 486 aggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagacaat 545
||| |||||||||||||| || | ||||||||| || || || ||||| ||||| || ||
Sbjct: 359 agggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaaacgat 418
Query: 546 gacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatg 605
|||||| || || |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 419 gacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtagagatg 478
Query: 606 gaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggtagcc 665
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 479 gaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattggtaacc 538
Query: 666 actgttaatggcatacgaaattcctgccaccattccgaccaggttaatgacaagaacagt 725
||||| ||||| || || || ||||||||||| || |||||||| || || || || ||
Sbjct: 539 gctgttgatggcgtatgatatgcctgccaccatgcccaccaggttgatcacgaggacggt 598
Query: 726 ggtcggaggaatgagcaaactggtccacttgaacacatatagctcagcaaagtc 779
||||||||| ||||| | |||||||||||||||||| |||||||| ||||||||
Sbjct: 599 ggtcggagggatgaggagactggtccacttgaacacgtatagctctgcaaagtc 652
>gb|BE411751.1|BE411751 ISC008.H06F990806 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC008.H06, mRNA sequence
Length = 527
Score = 278 bits (140), Expect = 1e-072
Identities = 280/326 (85%), Gaps = 1/326 (0%)
Strand = Plus / Minus
Query: 484 aaaggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagaca 543
||||| |||||||||||||| || | |||||||| || || || ||||| ||||| ||
Sbjct: 329 aaagggtcgatcttcacccagaggagggagaagag-gaggcgaggaggatcgaccaaacn 271
Query: 544 atgacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagaga 603
||||| || || || |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 270 atgacnatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtagaga 211
Query: 604 tggaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggtag 663
||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 210 tggaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattggtaa 151
Query: 664 ccactgttaatggcatacgaaattcctgccaccattccgaccaggttaatgacaagaaca 723
|| ||||| ||||| || || || ||||||||||| || |||||||| || || || ||
Sbjct: 150 ccgctgttgatggcgtatgatatgcctgccaccatgcccaccaggttgatcacgaggacg 91
Query: 724 gtggtcggaggaatgagcaaactggtccacttgaacacatatagctcagcaaagtcgcca 783
||||||||||| ||||| | |||||||||||||||||| |||||||| |||||||||||
Sbjct: 90 gtggtcggagggatgaggagactggtccacttgaacacgtatagctctgcaaagtcgccg 31
Query: 784 tcctcatcagatgcctttgaggtaac 809
||||| || |||||| ||||||||
Sbjct: 30 tcctcgtcgtttgccttggaggtaac 5
>gb|BE411894.1|BE411894 ISC010.D05F990917 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC010.D05, mRNA sequence
Length = 448
Score = 268 bits (135), Expect = 1e-069
Identities = 280/327 (85%), Gaps = 2/327 (0%)
Strand = Plus / Minus
Query: 483 gaaaggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagac 542
|||||| |||||||||||||| || | ||||||||| || || || ||||| ||||| ||
Sbjct: 329 gaaagggtcgatcttcacccagaggagggagaagat-ga-gcgaggaggatcgaccaaac 272
Query: 543 aatgacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagag 602
|||||||| || || |||||||| ||| | |||||||||||||||||||||||||||||
Sbjct: 271 gatgacgatggtcggcgtgcggttntgcttccccatgagacccttgaggaaggggtagag 212
Query: 603 atggaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggta 662
|||||||||||||||||| ||||||| | ||| |||||||||||| ||||||||||||||
Sbjct: 211 atggaggatcacccagattgagaagancngctntccaaagagcgggccccaggattggta 152
Query: 663 gccactgttaatggcatacgaaattcctgccaccattccgaccaggttaatgacaagaac 722
|| ||||| ||||| || || || ||||||||||| || |||||||| || || || ||
Sbjct: 151 accgctgttgatggcgtatgatatgcctgccaccatgcccaccaggttgatcacgaggac 92
Query: 723 agtggtcggaggaatgagcaaactggtccacttgaacacatatagctcagcaaagtcgcc 782
||||||||||| ||||| | |||||||||||||||||| |||||||| |||||||||||
Sbjct: 91 ggtggtcggagggatgaggagactggtccacttgaacacgtatagctctgcaaagtcgcc 32
Query: 783 atcctcatcagatgcctttgaggtaac 809
||||| || |||||| ||||||||
Sbjct: 31 gtcctcgtcgtttgccttggaggtaac 5
>gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42j03 3', mRNA sequence
Length = 590
Score = 268 bits (135), Expect = 1e-069
Identities = 270/315 (85%)
Strand = Plus / Plus
Query: 426 cgatcagcagttgacgccacattgccccaaggcagcagctttctgtgtcggggagatgaa 485
|||||||||||||||||| || ||||||| |||| | || ||||| || ||| |||||
Sbjct: 273 cgatcagcagttgacgccgcactgccccatggcaacggccttctgggtatcggaaatgaa 332
Query: 486 aggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagacaat 545
||| |||||||||||||| || | ||||||||| || || || ||||| ||||| || ||
Sbjct: 333 agggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaaacgat 392
Query: 546 gacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatg 605
|||||| || || |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 393 gacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtagagatg 452
Query: 606 gaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggtagcc 665
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 453 gaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattggtaacc 512
Query: 666 actgttaatggcatacgaaattcctgccaccattccgaccaggttaatgacaagaacagt 725
||||| ||||| || || || ||||||||||| || |||||||| || || || || ||
Sbjct: 513 gctgttgatggcgtatgatatgcctgccaccatgcccaccaggttgatcacgaggacggt 572
Query: 726 ggtcggaggaatgag 740
||||||||| |||||
Sbjct: 573 ggtcggagggatgag 587
>gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20p06 3', mRNA sequence
Length = 509
Score = 256 bits (129), Expect = 5e-066
Identities = 246/285 (86%)
Strand = Plus / Plus
Query: 426 cgatcagcagttgacgccacattgccccaaggcagcagctttctgtgtcggggagatgaa 485
|||||||||||||||||| || ||||||| |||| | || ||||| || ||| |||||
Sbjct: 218 cgatcagcagttgacgccgcactgccccatggcaacggccttctgggtatcggaaatgaa 277
Query: 486 aggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagacaat 545
||| |||||||||||||| || | ||||||||| || || || ||||| ||||| || ||
Sbjct: 278 agggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaaacgat 337
Query: 546 gacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatg 605
|||||| || || |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 338 gacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtagagatg 397
Query: 606 gaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggtagcc 665
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 398 gaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattggtaacc 457
Query: 666 actgttaatggcatacgaaattcctgccaccattccgaccaggtt 710
||||| ||||| || || || ||||||||||| || ||||||||
Sbjct: 458 gctgttgatggcgtatgatatgcctgccaccatgcccaccaggtt 502
>gb|BJ468308.1|BJ468308 BJ468308 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38c07 3', mRNA sequence
Length = 611
Score = 254 bits (128), Expect = 2e-065
Identities = 270/316 (85%), Gaps = 1/316 (0%)
Strand = Plus / Plus
Query: 426 cgatcagcagttgacgccacattgccccaaggcagcagctttctgtgtcggggagatgaa 485
|||||||||||||||||| || ||||||| |||| | || ||||| || ||| |||||
Sbjct: 292 cgatcagcagttgacgccgcactgccccatggcaacggccttctgggtatcggaaatgaa 351
Query: 486 aggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagacaat 545
||| |||||||||||||| || | ||||||||| || || || ||||| ||||| || ||
Sbjct: 352 agggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaaacgat 411
Query: 546 gacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatg 605
|||||| || || |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 412 gacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtagagatg 471
Query: 606 gaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggt-agc 664
||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| | |
Sbjct: 472 gaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattggtaacc 531
Query: 665 cactgttaatggcatacgaaattcctgccaccattccgaccaggttaatgacaagaacag 724
| ||||| ||||| || || || ||||||||||| || |||||||| || || || || |
Sbjct: 532 cgctgttgatggcgtatgatatgcctgccaccatgcccaccaggttgatcacgaggacgg 591
Query: 725 tggtcggaggaatgag 740
|||||||||| |||||
Sbjct: 592 tggtcggagggatgag 607
>gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0017H01f, mRNA sequence
Length = 755
Score = 248 bits (125), Expect = 1e-063
Identities = 245/285 (85%)
Strand = Plus / Minus
Query: 426 cgatcagcagttgacgccacattgccccaaggcagcagctttctgtgtcggggagatgaa 485
|||||||||||||||||| || ||||||| |||| | || || || || ||| |||||
Sbjct: 297 cgatcagcagttgacgccgcactgccccatggcaacggccttttgggtatcggaaatgaa 238
Query: 486 aggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagacaat 545
||| |||||||||||||| || | ||||||||| || || || ||||| ||||| || ||
Sbjct: 237 agggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaaacgat 178
Query: 546 gacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatg 605
|||||| || || |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 177 gacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtagagatg 118
Query: 606 gaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggtagcc 665
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 117 gaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattggtaacc 58
Query: 666 actgttaatggcatacgaaattcctgccaccattccgaccaggtt 710
||||| ||||| || || || ||||||||||| || ||||||||
Sbjct: 57 gctgttgatggcgtatgatatgcctgccaccatgcccaccaggtt 13
>gb|BJ447699.1|BJ447699 BJ447699 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16p07 5', mRNA sequence
Length = 577
Score = 242 bits (122), Expect = 7e-062
Identities = 233/270 (86%)
Strand = Plus / Minus
Query: 426 cgatcagcagttgacgccacattgccccaaggcagcagctttctgtgtcggggagatgaa 485
|||||||||||||||||| || ||||||| |||| | || ||||| || ||| |||||
Sbjct: 270 cgatcagcagttgacgccgcactgccccatggcaacggccttctgggtatcggaaatgaa 211
Query: 486 aggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagacaat 545
||| |||||||||||||| || | ||||||||| || || || ||||| ||||| || ||
Sbjct: 210 agggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaaacgat 151
Query: 546 gacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatg 605
|||||| || || |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 150 gacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtagagatg 91
Query: 606 gaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggtagcc 665
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 90 gaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattggtaacc 31
Query: 666 actgttaatggcatacgaaattcctgccac 695
||||| ||||| || || || ||||||||
Sbjct: 30 gctgttgatggcgtatgatatgcctgccac 1
Score = 44.1 bits (22), Expect = 0.034
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 ttttgatacaacagctgccttatata 37
||||||| ||||||||||||||||||
Sbjct: 571 ttttgatgcaacagctgccttatata 546
>gb|BJ455449.1|BJ455449 BJ455449 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16p07 3', mRNA sequence
Length = 528
Score = 242 bits (122), Expect = 7e-062
Identities = 233/270 (86%)
Strand = Plus / Plus
Query: 426 cgatcagcagttgacgccacattgccccaaggcagcagctttctgtgtcggggagatgaa 485
|||||||||||||||||| || ||||||| |||| | || ||||| || ||| |||||
Sbjct: 259 cgatcagcagttgacgccgcactgccccatggcaacggccttctgggtatcggaaatgaa 318
Query: 486 aggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagacaat 545
||| |||||||||||||| || | ||||||||| || || || ||||| ||||| || ||
Sbjct: 319 agggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaaacgat 378
Query: 546 gacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatg 605
|||||| || || |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 379 gacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtagagatg 438
Query: 606 gaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggtagcc 665
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 439 gaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattggtaacc 498
Query: 666 actgttaatggcatacgaaattcctgccac 695
||||| ||||| || || || ||||||||
Sbjct: 499 gctgttgatggcgtatgatatgcctgccac 528
>gb|AL503049.1|AL503049 AL503049 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09I21u 3', mRNA sequence
Length = 644
Score = 214 bits (108), Expect = 2e-053
Identities = 205/236 (86%), Gaps = 1/236 (0%)
Strand = Plus / Plus
Query: 426 cgatcagcagttgacgccacattgccccaaggcagcagctttctgtgtcggggagatgaa 485
|||||||||||||||||| || ||||||| |||| | || ||||| || ||| |||||
Sbjct: 329 cgatcagcagttgacgccgcactgccccatggcaacggccttctgggtatcggaaatgaa 388
Query: 486 aggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagacaat 545
||| |||||||||||||| || | ||||||||| || || || ||||| ||||| || ||
Sbjct: 389 agggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaaacgat 448
Query: 546 gacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatg 605
|||||| || || |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 449 gacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtagagatg 508
Query: 606 gaggatcacccagatcgagaagaacagctttccaaagagc-ggaccccaggattgg 660
||||||||||||||| |||||||| ||||||||||||||| || ||||||||||||
Sbjct: 509 gaggatcacccagattgagaagaagagctttccaaagagcggggccccaggattgg 564
Score = 44.1 bits (22), Expect = 0.034
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 ttttgatacaacagctgccttatata 37
||||||| ||||||||||||||||||
Sbjct: 27 ttttgatgcaacagctgccttatata 52
>gb|BQ464910.1|BQ464910 HU02B19r HU Hordeum vulgare subsp. vulgare cDNA clone HU02B19
5-PRIME, mRNA sequence
Length = 496
Score = 212 bits (107), Expect = 6e-053
Identities = 173/195 (88%)
Strand = Plus / Minus
Query: 426 cgatcagcagttgacgccacattgccccaaggcagcagctttctgtgtcggggagatgaa 485
||||||||||||||||||||| ||||||| ||| | |||||||| || ||| |||||
Sbjct: 209 cgatcagcagttgacgccacactgccccatggcgacggctttctgggtatcggatatgaa 150
Query: 486 aggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagacaat 545
||| ||||||||||||||||| | ||||||||| || || || ||||||||||| |||||
Sbjct: 149 agggtcgatcttcacccacaggagggagaagatggaggctaggaggatggaccaaacaat 90
Query: 546 gacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatg 605
|||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 89 gacgatggttggcgtgcggttctgcttccccatgagacccttgaggaaggggtagagatg 30
Query: 606 gaggatcacccagat 620
|||||||||||||||
Sbjct: 29 gaggatcacccagat 15
>gb|AL503528.1|AL503528 AL503528 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02H13T 5', mRNA sequence
Length = 700
Score = 180 bits (91), Expect = 2e-043
Identities = 207/243 (85%), Gaps = 2/243 (0%)
Strand = Plus / Minus
Query: 1198 gacccaagagcccaacggagcacctgattaagacgatcggaaagattgattggtgcagaa 1257
|||||||||||||| || || ||||| ||||||||||| |||||||||| || ||||||
Sbjct: 535 gacccaagagcccaccgaagaacctggttaagacgatctgaaagattgagaggcgcagaa 476
Query: 1258 cccttgaaacaaggtcgtggtggcatgcagtagattgattgccagccccttgca-tgcat 1316
|||||||| ||| ||| || |||||||| |||||| ||||||| | ||| |||||
Sbjct: 475 cccttgaatgcaggccgtttaggaatgcagtaaattgatcgccagcca-tggcaatgcat 417
Query: 1317 tttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctcttttcc 1376
||||||||||| || |||||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 416 cttaaacccagttaggatatcctctgtaactgacccatagatccagccaatctcttttcc 357
Query: 1377 ccattcagttttgtcctcatatccacaactgatgacatggatagcttcctttagtagaga 1436
||| || || ||||| ||||| ||||||| ||||||||||||||||||||| || |||||
Sbjct: 356 ccagtctgtcttgtcttcatagccacaaccgatgacatggatagcttccttcagaagaga 297
Query: 1437 agc 1439
|||
Sbjct: 296 agc 294
>gb|BF258768.2|BF258768 HVSMEf0016K01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0016K01f, mRNA sequence
Length = 588
Score = 180 bits (91), Expect = 2e-043
Identities = 207/243 (85%), Gaps = 2/243 (0%)
Strand = Plus / Minus
Query: 1198 gacccaagagcccaacggagcacctgattaagacgatcggaaagattgattggtgcagaa 1257
|||||||||||||| || || ||||| ||||||||||| |||||||||| || ||||||
Sbjct: 403 gacccaagagcccaccgaagaacctggttaagacgatctgaaagattgagaggcgcagaa 344
Query: 1258 cccttgaaacaaggtcgtggtggcatgcagtagattgattgccagccccttgca-tgcat 1316
|||||||| ||| ||| || |||||||| |||||| ||||||| | ||| |||||
Sbjct: 343 cccttgaatgcaggccgtttaggaatgcagtaaattgatcgccagcca-tggcaatgcat 285
Query: 1317 tttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctcttttcc 1376
||||||||||| || |||||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 284 cttaaacccagttaggatatcctctgtaactgacccatagatccagccaatctcttttcc 225
Query: 1377 ccattcagttttgtcctcatatccacaactgatgacatggatagcttcctttagtagaga 1436
||| || || ||||| ||||| ||||||| ||||||||||||||||||||| || |||||
Sbjct: 224 ccagtctgtcttgtcttcatagccacaaccgatgacatggatagcttccttcagaagaga 165
Query: 1437 agc 1439
|||
Sbjct: 164 agc 162
>gb|BI779535.2|BI779535 EBro01_SQ004_F12_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_F12 5', mRNA sequence
Length = 596
Score = 180 bits (91), Expect = 2e-043
Identities = 207/243 (85%), Gaps = 2/243 (0%)
Strand = Plus / Minus
Query: 1198 gacccaagagcccaacggagcacctgattaagacgatcggaaagattgattggtgcagaa 1257
|||||||||||||| || || ||||| ||||||||||| |||||||||| || ||||||
Sbjct: 349 gacccaagagcccaccgaagaacctggttaagacgatctgaaagattgagaggcgcagaa 290
Query: 1258 cccttgaaacaaggtcgtggtggcatgcagtagattgattgccagccccttgca-tgcat 1316
|||||||| ||| ||| || |||||||| |||||| ||||||| | ||| |||||
Sbjct: 289 cccttgaatgcaggccgtttaggaatgcagtaaattgatcgccagcca-tggcaatgcat 231
Query: 1317 tttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctcttttcc 1376
||||||||||| || |||||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 230 cttaaacccagttaggatatcctctgtaactgacccatagatccagccaatctcttttcc 171
Query: 1377 ccattcagttttgtcctcatatccacaactgatgacatggatagcttcctttagtagaga 1436
||| || || ||||| ||||| ||||||| ||||||||||||||||||||| || |||||
Sbjct: 170 ccagtctgtcttgtcttcatagccacaaccgatgacatggatagcttccttcagaagaga 111
Query: 1437 agc 1439
|||
Sbjct: 110 agc 108
>gb|CA031178.1|CA031178 HX09D18r HX Hordeum vulgare subsp. vulgare cDNA clone HX09D18
5-PRIME, mRNA sequence
Length = 654
Score = 180 bits (91), Expect = 2e-043
Identities = 207/243 (85%), Gaps = 2/243 (0%)
Strand = Plus / Minus
Query: 1198 gacccaagagcccaacggagcacctgattaagacgatcggaaagattgattggtgcagaa 1257
|||||||||||||| || || ||||| ||||||||||| |||||||||| || ||||||
Sbjct: 649 gacccaagagcccaccgaagaacctggttaagacgatctgaaagattgagaggcgcagaa 590
Query: 1258 cccttgaaacaaggtcgtggtggcatgcagtagattgattgccagccccttgca-tgcat 1316
|||||||| ||| ||| || |||||||| |||||| ||||||| | ||| |||||
Sbjct: 589 cccttgaatgcaggccgtttaggaatgcagtaaattgatcgccagcca-tggcaatgcat 531
Query: 1317 tttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctcttttcc 1376
||||||||||| || |||||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 530 cttaaacccagttaggatatcctctgtaactgacccatagatccagccaatctcttttcc 471
Query: 1377 ccattcagttttgtcctcatatccacaactgatgacatggatagcttcctttagtagaga 1436
||| || || ||||| ||||| ||||||| ||||||||||||||||||||| || |||||
Sbjct: 470 ccagtctgtcttgtcttcatagccacaaccgatgacatggatagcttccttcagaagaga 411
Query: 1437 agc 1439
|||
Sbjct: 410 agc 408
>gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 5', mRNA sequence
Length = 654
Score = 178 bits (90), Expect = 9e-043
Identities = 380/474 (80%), Gaps = 2/474 (0%)
Strand = Plus / Minus
Query: 499 acccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttggt 558
|||||||||||||||||||| || || || |||| | |||||| ||||| || || |||
Sbjct: 615 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 556
Query: 559 gtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcacccag 618
|||||||| ||||| ||||| |||||||||||||||||||| | || | |||||||||
Sbjct: 555 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 496
Query: 619 atcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatggca 678
| | ||||| ||||| || |||||||| ||||| |||||||| |||||||| |||||
Sbjct: 495 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 436
Query: 679 tacgaaattcctgccaccattccgaccaggttaatga-caagaacagtggtcggaggaat 737
|| || | || || || | ||||||| |||||||| ||||| || |||||||| ||
Sbjct: 435 taggaggtaccagcaacgacaccgaccatgttaatgatcaagatg-gtcgtcggagggat 377
Query: 738 gagcaaactggtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgc 797
||| | | ||||||||||||| || ||||||||||||||||| || || ||| ||
Sbjct: 376 gagaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagc 317
Query: 798 ctttgaggtaactgtgaagttggtatcaatcccagccaacactttcagcagaccctggaa 857
||||||||| || ||||||||||| || || || || | ||| ||||| |||||||| ||
Sbjct: 316 ctttgaggtgacagtgaagttggtgtcgataccggcaagcaccttcagaagaccctgaaa 257
Query: 858 cactgcgaagagatgggcagaggtgccaccaataacccaaaactgctcatttctccacca 917
|| || || |||||||||||| | || ||||| ||||| ||||| ||||| ||||||||
Sbjct: 256 gacggcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccacca 197
Query: 918 atcttcaatgccaacaccgctccatctaagctccaatataccagtggcaaaaat 971
|| |||||||||||||| ||||| || | ||| | ||||| |||||||||||
Sbjct: 196 ctcgtcaatgccaacaccactccacctcatctcaaggataccggtggcaaaaat 143
>gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 5', mRNA sequence
Length = 656
Score = 178 bits (90), Expect = 9e-043
Identities = 380/474 (80%), Gaps = 2/474 (0%)
Strand = Plus / Minus
Query: 499 acccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttggt 558
|||||||||||||||||||| || || || |||| | |||||| ||||| || || |||
Sbjct: 622 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 563
Query: 559 gtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcacccag 618
|||||||| ||||| ||||| |||||||||||||||||||| | || | |||||||||
Sbjct: 562 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 503
Query: 619 atcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatggca 678
| | ||||| ||||| || |||||||| ||||| |||||||| |||||||| |||||
Sbjct: 502 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 443
Query: 679 tacgaaattcctgccaccattccgaccaggttaatga-caagaacagtggtcggaggaat 737
|| || | || || || | ||||||| |||||||| ||||| || |||||||| ||
Sbjct: 442 taggaggtaccagcaacgacaccgaccatgttaatgatcaagatg-gtcgtcggagggat 384
Query: 738 gagcaaactggtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgc 797
||| | | ||||||||||||| || ||||||||||||||||| || || ||| ||
Sbjct: 383 gagaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagc 324
Query: 798 ctttgaggtaactgtgaagttggtatcaatcccagccaacactttcagcagaccctggaa 857
||||||||| || ||||||||||| || || || || | ||| ||||| |||||||| ||
Sbjct: 323 ctttgaggtgacagtgaagttggtgtcgataccggcaagcaccttcagaagaccctgaaa 264
Query: 858 cactgcgaagagatgggcagaggtgccaccaataacccaaaactgctcatttctccacca 917
|| || || |||||||||||| | || ||||| ||||| ||||| ||||| ||||||||
Sbjct: 263 gacggcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccacca 204
Query: 918 atcttcaatgccaacaccgctccatctaagctccaatataccagtggcaaaaat 971
|| |||||||||||||| ||||| || | ||| | ||||| |||||||||||
Sbjct: 203 ctcgtcaatgccaacaccactccacctcatctcaaggataccggtggcaaaaat 150
>gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105G09_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 916
Score = 178 bits (90), Expect = 9e-043
Identities = 380/474 (80%), Gaps = 2/474 (0%)
Strand = Plus / Minus
Query: 499 acccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttggt 558
|||||||||||||||||||| || || || |||| | |||||| ||||| || || |||
Sbjct: 575 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 516
Query: 559 gtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcacccag 618
|||||||| ||||| ||||| |||||||||||||||||||| | || | |||||||||
Sbjct: 515 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 456
Query: 619 atcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatggca 678
| | ||||| ||||| || |||||||| ||||| |||||||| |||||||| |||||
Sbjct: 455 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 396
Query: 679 tacgaaattcctgccaccattccgaccaggttaatga-caagaacagtggtcggaggaat 737
|| || | || || || | ||||||| |||||||| ||||| || |||||||| ||
Sbjct: 395 taggaggtaccagcaacgacaccgaccatgttaatgatcaagatg-gtcgtcggagggat 337
Query: 738 gagcaaactggtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgc 797
||| | | ||||||||||||| || ||||||||||||||||| || || ||| ||
Sbjct: 336 gagaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagc 277
Query: 798 ctttgaggtaactgtgaagttggtatcaatcccagccaacactttcagcagaccctggaa 857
||||||||| || ||||||||||| || || || || | ||| ||||| |||||||| ||
Sbjct: 276 ctttgaggtgacagtgaagttggtgtcgataccggcaagcaccttcagaagaccctgaaa 217
Query: 858 cactgcgaagagatgggcagaggtgccaccaataacccaaaactgctcatttctccacca 917
|| || || |||||||||||| | || ||||| ||||| ||||| ||||| ||||||||
Sbjct: 216 gacggcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccacca 157
Query: 918 atcttcaatgccaacaccgctccatctaagctccaatataccagtggcaaaaat 971
|| |||||||||||||| ||||| || | ||| | ||||| |||||||||||
Sbjct: 156 ctcgtcaatgccaacaccactccacctcatctcaaggataccggtggcaaaaat 103
>gb|AV836573.1|AV836573 AV836573 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum vulgare
subsp. vulgare cDNA clone basd25p02, mRNA sequence
Length = 349
Score = 174 bits (88), Expect = 1e-041
Identities = 206/243 (84%), Gaps = 2/243 (0%)
Strand = Plus / Minus
Query: 1198 gacccaagagcccaacggagcacctgattaagacgatcggaaagattgattggtgcagaa 1257
|||||||||||||| || || ||||| ||||||||||| |||||||||| || ||||||
Sbjct: 270 gacccaagagcccaccgaagaacctggttaagacgatctgaaagattgagaggcgcagaa 211
Query: 1258 cccttgaaacaaggtcgtggtggcatgcagtagattgattgccagccccttgca-tgcat 1316
|||||||| ||| ||| || |||||||| |||||| ||||||| | ||| |||||
Sbjct: 210 cccttgaatgcaggccgtttaggaatgcagtaaattgatcgccagcca-tggcaatgcat 152
Query: 1317 tttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctcttttcc 1376
||||||||||| || |||||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 151 cttaaacccagttaggatatcctctgtaactgacccatagatccagccaatctcttttcc 92
Query: 1377 ccattcagttttgtcctcatatccacaactgatgacatggatagcttcctttagtagaga 1436
||| || || ||||| ||||| ||||| | ||||||||||||||||||||| || |||||
Sbjct: 91 ccagtctgtcttgtcttcatagccacanccgatgacatggatagcttccttcagaagaga 32
Query: 1437 agc 1439
|||
Sbjct: 31 agc 29
>gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. vulgare cDNA clone HF25D10
5-PRIME, mRNA sequence
Length = 621
Score = 174 bits (88), Expect = 1e-041
Identities = 357/444 (80%), Gaps = 2/444 (0%)
Strand = Plus / Minus
Query: 499 acccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttggt 558
|||||||||||||||||||| || || || |||| | |||||| ||||| || || |||
Sbjct: 454 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 395
Query: 559 gtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcacccag 618
|||||||| ||||| ||||| |||||||||||||||||||| | || | |||||||||
Sbjct: 394 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 335
Query: 619 atcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatggca 678
| | ||||| ||||| || |||||||| ||||| |||||||| |||||||| |||||
Sbjct: 334 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 275
Query: 679 tacgaaattcctgccaccattccgaccaggttaatga-caagaacagtggtcggaggaat 737
|| || | || || || | ||||||| |||||||| ||||| || |||||||| ||
Sbjct: 274 taggaggtaccagcaacgacaccgaccatgttaatgatcaagatg-gtcgtcggagggat 216
Query: 738 gagcaaactggtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgc 797
||| | | ||||||||||||| || ||||||||||||||||| || || ||| ||
Sbjct: 215 gagaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagc 156
Query: 798 ctttgaggtaactgtgaagttggtatcaatcccagccaacactttcagcagaccctggaa 857
||||||||| || ||||||||||| || || || || | ||| ||||| |||||||| ||
Sbjct: 155 ctttgaggtgacagtgaagttggtgtcgataccggcaagcaccttcagaagaccctgaaa 96
Query: 858 cactgcgaagagatgggcagaggtgccaccaataacccaaaactgctcatttctccacca 917
|| || || |||||||||||| | || ||||| ||||| ||||| ||||| ||||||||
Sbjct: 95 gacggcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccacca 36
Query: 918 atcttcaatgccaacaccgctcca 941
|| |||||||||||||| |||||
Sbjct: 35 ctcgtcaatgccaacaccactcca 12
>gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109B12_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 880
Score = 170 bits (86), Expect = 2e-040
Identities = 378/473 (79%), Gaps = 2/473 (0%)
Strand = Plus / Minus
Query: 500 cccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttggtg 559
||||||||||||||||||| || || || |||| | |||||| ||||| || || ||||
Sbjct: 812 cccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggtg 753
Query: 560 tgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcacccaga 619
||||||| ||| | ||||| |||||||||||||||||||| | || | ||||||||||
Sbjct: 752 tgcggttttgcntgcccataagacccttgaggaaggggtataagtgaacaatcacccaga 693
Query: 620 tcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatggcat 679
| ||||| ||||| || |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 692 aggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcgt 633
Query: 680 acgaaattcctgccaccattccgaccaggttaatga-caagaacagtggtcggaggaatg 738
| || | || || || | ||||||| |||||||| ||||| || |||||||| |||
Sbjct: 632 aggaggtaccagcaacgacaccgaccatgttaatgatcaagatg-gtcgtcggagggatg 574
Query: 739 agcaaactggtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatgcc 798
|| | | ||||||||||||| || ||||||||||||||||| || || ||| |||
Sbjct: 573 agaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagcc 514
Query: 799 tttgaggtaactgtgaagttggtatcaatcccagccaacactttcagcagaccctggaac 858
|||||||| || ||||||||||| || || || || | ||| ||||| |||||||| ||
Sbjct: 513 tttgaggtgacagtgaagttggtgtcgataccggcaagcaccttcagaagaccctgaaag 454
Query: 859 actgcgaagagatgggcagaggtgccaccaataacccaaaactgctcatttctccaccaa 918
|| || || |||||||||||| | || ||||| ||||| ||||| ||||| ||||||||
Sbjct: 453 acggcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccaccac 394
Query: 919 tcttcaatgccaacaccgctccatctaagctccaatataccagtggcaaaaat 971
|| |||||||||||||| ||||| || | ||| | ||||| |||||||||||
Sbjct: 393 tcgtcaatgccaacaccactccacctcatctcaaggataccggtggcaaaaat 341
Score = 54.0 bits (27), Expect = 4e-005
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 1186 agaatttccactgacccaagagcccaacggagcacctgattaagacgatcggaaagattg 1245
|||||||| || || ||||||||||| ||||||| ||| || |||||||| |||||||||
Sbjct: 126 agaatttcaacggaaccaagagcccaccggagca-ctggttcagacgatctgaaagattg 68
Query: 1246 attggtgcaga 1256
|| || |||||
Sbjct: 67 atgggggcaga 57
>gb|BU989992.1|BU989992 HF23J07r HF Hordeum vulgare subsp. vulgare cDNA clone HF23J07
5-PRIME, mRNA sequence
Length = 480
Score = 168 bits (85), Expect = 9e-040
Identities = 223/269 (82%)
Strand = Plus / Minus
Query: 1156 ccataccagataggacaatgtctactaagcagaatttccactgacccaagagcccaacgg 1215
|||||||| || |||||||| ||||| | |||||||||||||| ||||| ||||| ||
Sbjct: 368 ccataccatatgggacaatgcctactgaaaagaatttccactgaaccaagcgcccaccga 309
Query: 1216 agcacctgattaagacgatcggaaagattgattggtgcagaacccttgaaacaaggtcgt 1275
||||| ||||| |||||||| ||||| ||||| || ||||| ||||||||| |||||
Sbjct: 308 agcacttgattcagacgatctgaaaggttgataggggcagagcccttgaaagctggtcgc 249
Query: 1276 ggtggcatgcagtagattgattgccagccccttgcatgcattttaaacccagtcagaata 1335
||||| ||||||||||| ||||||| | ||||||||| || |||||||| ||||||
Sbjct: 248 ttaggcatacagtagattgaccgccagccacgtgcatgcatcttgaacccagtaagaata 189
Query: 1336 tcctccgttactgaaccatagatccagccaatctcttttccccattcagttttgtcctca 1395
|| ||||| || ||||| ||||||||||||||||| ||||||| ||| || |||||||
Sbjct: 188 tcttccgtaacagaaccgtagatccagccaatctcccttccccaatcacttcggtcctca 129
Query: 1396 tatccacaactgatgacatggatagcttc 1424
|| ||||| || ||||||||||| |||||
Sbjct: 128 taaccacagctaatgacatggattgcttc 100
>gb|AL505671.1|AL505671 AL505671 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09C19V 5', mRNA sequence
Length = 497
Score = 167 bits (84), Expect = 3e-039
Identities = 207/244 (84%), Gaps = 3/244 (1%)
Strand = Plus / Minus
Query: 1198 gacccaagagcccaacgga-gcacctgattaagacgatcggaaagattgattggtgcaga 1256
|||||||||||||| | || | ||||| ||||||||||| |||||||||| || |||||
Sbjct: 480 gacccaagagcccacccgaagaacctggttaagacgatctgaaagattgagaggcgcaga 421
Query: 1257 acccttgaaacaaggtcgtggtggcatgcagtagattgattgccagccccttgca-tgca 1315
||||||||| ||| ||| || |||||||| |||||| ||||||| | ||| ||||
Sbjct: 420 acccttgaatgcaggccgtttaggaatgcagtaaattgatcgccagcca-tggcaatgca 362
Query: 1316 ttttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctcttttc 1375
| ||||||||||| || |||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 361 tcttaaacccagttaggatatcctctgtaactgacccatagatccagccaatctcttttc 302
Query: 1376 cccattcagttttgtcctcatatccacaactgatgacatggatagcttcctttagtagag 1435
|||| || || ||||| ||||| ||||||| ||||||||||||||||||||| || ||||
Sbjct: 301 cccagtctgtcttgtcttcatagccacaaccgatgacatggatagcttccttcagaagag 242
Query: 1436 aagc 1439
||||
Sbjct: 241 aagc 238
>gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4p09 5', mRNA sequence
Length = 583
Score = 159 bits (80), Expect = 8e-037
Identities = 349/436 (80%), Gaps = 2/436 (0%)
Strand = Plus / Minus
Query: 537 ccagacaatgacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggg 596
|||||| ||||| || || ||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 576 ccagacgatgacaatcgtcggtgtgcggttttgcctgcccataagacccttgaggaaggg 517
Query: 597 gtagagatggaggatcacccagatcgagaagaacagctttccaaagagcggaccccagga 656
||| | || | |||||||||| | ||||| ||||| || |||||||| ||||| ||
Sbjct: 516 gtataagtgaacaatcacccagaaggcaaagaagagcttcccgaagagcggcccccaaga 457
Query: 657 ttggtagccactgttaatggcatacgaaattcctgccaccattccgaccaggttaatga- 715
|||||| |||||||| ||||| || || | || || || | ||||||| ||||||||
Sbjct: 456 ttggtaaccactgttgatggcgtaggaggtaccagcaacgacaccgaccatgttaatgat 397
Query: 716 caagaacagtggtcggaggaatgagcaaactggtccacttgaacacatatagctcagcaa 775
||||| || |||||||| ||||| | | ||||||||||||| || ||||||||||
Sbjct: 396 caagatg-gtcgtcggagggatgagaagcgtcgtccacttgaacatgtagagctcagcaa 338
Query: 776 agtcgccatcctcatcagatgcctttgaggtaactgtgaagttggtatcaatcccagcca 835
||||||| || || ||| ||||||||||| || ||||||||||| || || || || |
Sbjct: 337 agtcgccttcttcgtcattagcctttgaggtgacagtgaagttggtgtcgataccggcaa 278
Query: 836 acactttcagcagaccctggaacactgcgaagagatgggcagaggtgccaccaataaccc 895
||| ||||| |||||||| || || || || |||||||||||| | || ||||| ||||
Sbjct: 277 gcaccttcagaagaccctgaaagacggcaaacagatgggcagagatacctccaatgaccc 218
Query: 896 aaaactgctcatttctccaccaatcttcaatgccaacaccgctccatctaagctccaata 955
| ||||| ||||| |||||||| || |||||||||||||| ||||| || | ||| | |
Sbjct: 217 agaactgttcattcctccaccactcgtcaatgccaacaccactccacctcatctcaagga 158
Query: 956 taccagtggcaaaaat 971
|||| |||||||||||
Sbjct: 157 taccggtggcaaaaat 142
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 349,730
Number of Sequences: 312970
Number of extensions: 349730
Number of successful extensions: 95717
Number of sequences better than 0.5: 191
Number of HSP's better than 0.5 without gapping: 190
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 95216
Number of HSP's gapped (non-prelim): 463
length of query: 3838
length of database: 175,134,539
effective HSP length: 20
effective length of query: 3818
effective length of database: 168,875,139
effective search space: 644765280702
effective search space used: 644765280702
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)