BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430806.2.1
(1380 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW982442.3|AW982442 HVSMEg0003F01f Hordeum vulgare pre-a... 327 6e-088
gb|BU974530.1|BU974530 HB28D11r BC Hordeum vulgare subsp. v... 307 5e-082
gb|CB881091.1|CB881091 HM08L24w HM Hordeum vulgare subsp. v... 278 5e-073
gb|CK125868.1|CK125868 BES1824111A1e12 BES1824 Hordeum vulg... 250 1e-064
gb|AL507045.1|AL507045 AL507045 Hordeum vulgare Barke devel... 246 2e-063
gb|BE060861.3|BE060861 HVSMEg0013K01f Hordeum vulgare pre-a... 244 7e-063
gb|AL502019.1|AL502019 AL502019 Hordeum vulgare Barke roots... 238 4e-061
gb|BU994960.1|BU994960 HM08L24r HM Hordeum vulgare subsp. v... 230 1e-058
gb|BJ469249.1|BJ469249 BJ469249 K. Sato unpublished cDNA li... 80 2e-013
gb|BJ474454.1|BJ474454 BJ474454 K. Sato unpublished cDNA li... 80 2e-013
gb|BJ477488.1|BJ477488 BJ477488 K. Sato unpublished cDNA li... 54 1e-005
gb|AJ463344.1|AJ463344 AJ463344 S00002 Hordeum vulgare subs... 52 5e-005
gb|AL510472.1|AL510472 AL510472 Hordeum vulgare Barke devel... 48 8e-004
gb|BE602462.1|BE602462 HVSMEh0098P18f Hordeum vulgare 5-45 ... 42 0.048
gb|BF628143.2|BF628143 HVSMEb0003E01f Hordeum vulgare seedl... 42 0.048
gb|AV916696.1|AV916696 AV916696 K. Sato unpublished cDNA li... 42 0.048
gb|AV921988.1|AV921988 AV921988 K. Sato unpublished cDNA li... 42 0.048
gb|BQ471523.1|BQ471523 HV02L02r HV Hordeum vulgare subsp. v... 42 0.048
gb|BM099145.2|BM099145 EBes01_SQ002_F19_R embryo sac, 4-6 D... 40 0.19
gb|BU972406.1|BU972406 HB21I22r BC Hordeum vulgare subsp. v... 40 0.19
gb|BU989150.1|BU989150 HF19P04r HF Hordeum vulgare subsp. v... 40 0.19
gb|BU999478.1|BU999478 HI14K06r HI Hordeum vulgare subsp. v... 40 0.19
>gb|AW982442.3|AW982442 HVSMEg0003F01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003F01f, mRNA sequence
Length = 589
Score = 327 bits (165), Expect = 6e-088
Identities = 285/325 (87%)
Strand = Plus / Plus
Query: 804 tcaaagttgaagataacattaatcttgacttagctgggttaattgagatgctcgaaggcc 863
|||||||||| ||||| |||||||||||||| |||||||||||||||||||| | ||||
Sbjct: 7 tcaaagttgacgataatattaatcttgacttggctgggttaattgagatgcttgctggcc 66
Query: 864 gtcgaggtagccaaggattgtacatgggttgtatgaaatcagggatggtcataagtgaag 923
||||||||||||| || ||||||||||| || ||||||||||| ||| | |||||||
Sbjct: 67 gtcgaggtagccatgggttgtacatgggctgcatgaaatcaggagctgtcgttagtgaag 126
Query: 924 agggccaacaatggtatgaacctgagtggtggaaatttggagattcaaaaacgtattttc 983
||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 127 aggagcaacaatggtatgaacctgaatggtggaaatttggagattcaaggacgtattttc 186
Query: 984 gacacgcttctggttctttgtttatcctctcaaaaaatttggctcgctacatcaacataa 1043
| || |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 187 gccatgcttctggttctttatttatcctctcaaacaatttggctcgctacatcaacataa 246
Query: 1044 atagtgcgtcactgcagagttatgcacacgatgatatatcagtaggttcatggatgatgg 1103
| ||||| || ||||| || ||||| || || || ||||| || ||||||||||||||||
Sbjct: 247 acagtgcatcgctgcaaagctatgcgcatgacgacatatcggttggttcatggatgatgg 306
Query: 1104 gactgaatgcaacttacgtggatga 1128
| || ||||| |||||||| |||||
Sbjct: 307 ggcttaatgccacttacgttgatga 331
>gb|BU974530.1|BU974530 HB28D11r BC Hordeum vulgare subsp. vulgare cDNA clone HB28D11
5-PRIME, mRNA sequence
Length = 467
Score = 307 bits (155), Expect = 5e-082
Identities = 290/335 (86%)
Strand = Plus / Plus
Query: 500 cttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtcttccgt 559
||||| |||||||||||||||||||| || |||||||| |||||||||||| |||||||
Sbjct: 132 cttgcggtcattggagtttacactggcttcggctcccggctcaagaggaacaccttccgt 191
Query: 560 ggctcctggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtagctatt 619
|||||||||||||| |||||||||||| | ||||||||||||||||||||||| | ||||
Sbjct: 192 ggctcctggatgcccagaggtgatgctttaaagaagcttgaggaaaagggtgtggttatt 251
Query: 620 cgttttgttattggtcggagtgcaaatcgaggtgatagcttggaccgtaatattgatgat 679
||||||||||||| |||||| | || ||||||||||||||||||||||||||| ||||
Sbjct: 252 tgttttgttattggccggagtcctaaccgaggtgatagcttggaccgtaatattaatgaa 311
Query: 680 gaaaatcggcagacaaaggacttcttgattcttgaaagtcatgaagaggctgcagaagaa 739
|||| | ||||||| || ||||||||||| |||||||| || || |||||||| |||
Sbjct: 312 gaaagcagaaagacaaacgatttcttgattctggaaagtcacgaggaagctgcagaggaa 371
Query: 740 ttaccgagcaaagcaaaaattttcttcagtgctgcagttgaagcctgggatgcagaattt 799
||||| | |||| || ||||||||||||| ||| | ||||| ||||||||||| ||
Sbjct: 372 ttacctaaaaaagttaagtttttcttcagtgcagcaatagaagcttgggatgcagagttc 431
Query: 800 tatgtcaaagttgaagataacattaatcttgactt 834
|||||||||||||| ||||| ||||||||||||||
Sbjct: 432 tatgtcaaagttgacgataatattaatcttgactt 466
Score = 65.9 bits (33), Expect = 3e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 407 gaggcggagatggacctgaccaaggccaagagcgaggggtacctgtgggggaa 459
||||||||||||||| | ||||||| ||||||||||||||| ||||||||||
Sbjct: 33 gaggcggagatggacattgccaaggcgaagagcgaggggtacttgtgggggaa 85
>gb|CB881091.1|CB881091 HM08L24w HM Hordeum vulgare subsp. vulgare cDNA clone HM08L24
3-PRIME, mRNA sequence
Length = 588
Score = 278 bits (140), Expect = 5e-073
Identities = 251/288 (87%)
Strand = Plus / Minus
Query: 841 gttaattgagatgctcgaaggccgtcgaggtagccaaggattgtacatgggttgtatgaa 900
||||||||||||||| | ||||||||||||||||| || ||||||||||| || |||||
Sbjct: 588 gttaattgagatgcttgctggccgtcgaggtagccatgggttgtacatgggctgcatgaa 529
Query: 901 atcagggatggtcataagtgaagagggccaacaatggtatgaacctgagtggtggaaatt 960
|||||| ||| | |||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 528 atcaggagctgtcgttagtgaagaggagcaacaatggtatgaacctgaatggtggaaatt 469
Query: 961 tggagattcaaaaacgtattttcgacacgcttctggttctttgtttatcctctcaaaaaa 1020
||||||||||| ||||||||||| || |||||||||||||| |||||||||||||| ||
Sbjct: 468 tggagattcaaggacgtattttcgccatgcttctggttctttatttatcctctcaaacaa 409
Query: 1021 tttggctcgctacatcaacataaatagtgcgtcactgcagagttatgcacacgatgatat 1080
|||||||||||||||||||||||| ||||| || ||||| || ||||| || || || ||
Sbjct: 408 tttggctcgctacatcaacataaacagtgcatcgctgcaaagctatgcgcatgacgacat 349
Query: 1081 atcagtaggttcatggatgatgggactgaatgcaacttacgtggatga 1128
||| || ||||||||||||||||| || ||||| |||||||| |||||
Sbjct: 348 atcggttggttcatggatgatggggcttaatgccacttacgttgatga 301
>gb|CK125868.1|CK125868 BES1824111A1e12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E1211 5-PRIME, mRNA sequence
Length = 375
Score = 250 bits (126), Expect = 1e-064
Identities = 281/332 (84%), Gaps = 3/332 (0%)
Strand = Plus / Plus
Query: 115 cgccgccatggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggcccc 174
||||||||||||||||||||||||||||||||||||||| |||||||| | |||| ||||
Sbjct: 44 cgccgccatggagacgctggccagcgccatgcggcgcgacaaccgccgcttcaagccccc 103
Query: 175 gccctcctcctctgcttcctccgccctcgcctcgg---gcagggtccctctcgtcatggc 231
| |||||||||| | ||||||||| |||||| | |||||||||| |||||||||||
Sbjct: 104 gtcctcctcctcctcctcctccgccgccgcctccgccggcagggtccccctcgtcatggc 163
Query: 232 cttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgcagac 291
||||||| |||||||||||||| | |||||||||||||| | |||||||||||||||||
Sbjct: 164 cttcctcgcctgcctcgcctgggtgtacgtcgccggccggctatggcaggacgcgcagac 223
Query: 292 ccgggcgatcctgtccggcctcctcgagaagagctctaccagcgtcccgaaggtgctctc 351
|||||| ||||| ||||||||||||||||||| | | || |||| |||| | ||||
Sbjct: 224 ccgggccatcctctccggcctcctcgagaagaacaccggcaatctccccaaggagatctc 283
Query: 352 ggtggaggacaagcttaggaaccttgggtgcaaggcgattggaaggaaaattgttgaggc 411
|||||| |||||||| ||| |||| || |||| | |||||| ||||| || | |||||
Sbjct: 284 ggtggacgacaagctgagggacctcggatgcactgggattgggaggaagatcgccgaggc 343
Query: 412 ggagatggacctgaccaaggccaagagcgagg 443
|||||||||| | ||||||| ||||||||||
Sbjct: 344 ggagatggacattgccaaggcgaagagcgagg 375
>gb|AL507045.1|AL507045 AL507045 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05A15T 5',
mRNA sequence
Length = 659
Score = 246 bits (124), Expect = 2e-063
Identities = 266/311 (85%), Gaps = 2/311 (0%)
Strand = Plus / Plus
Query: 500 cttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtcttccgt 559
||||| |||||||||||||||||||| || |||||||| |||||||||||| |||||||
Sbjct: 331 cttgcggtcattggagtttacactggcttcggctcccggctcaagaggaacaccttccgt 390
Query: 560 ggctcctggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtagctatt 619
|||||||||||||| |||||||||||| | ||||||||||||||||||||||| | ||||
Sbjct: 391 ggctcctggatgcccagaggtgatgctttaaagaagcttgaggaaaagggtgtggttatt 450
Query: 620 cgttttgttattggtcggagtgcaaatcgaggtgatagcttggaccgtaatattgatgat 679
|||||||||||||| |||||| | || ||||||||||||| ||||||||||||| ||||
Sbjct: 451 cgttttgttattggccggagtcctaaccgaggtgatagctnggaccgtaatattaatgaa 510
Query: 680 gaaaatcggcagacaaaggacttcttgattcttgaaa-gtcatgaagaggctgcagaaga 738
|||| | ||||||| || ||||||||||| |||| |||| || || |||||||| ||
Sbjct: 511 gaaagcagaaagacaaacgatttcttgattctggaaaggtcacgaggaagctgcagagga 570
Query: 739 attaccgagcaaagcaaaaattttcttcagtgctgc-agttgaagcctgggatgcagaat 797
|||||| | |||| || ||||||||||||| || | | ||||| ||||||||||| |
Sbjct: 571 attacctaaaaaagttaagtttttcttcagtgcagcaaatagaagcttgggatgcagagt 630
Query: 798 tttatgtcaaa 808
| |||||||||
Sbjct: 631 tctatgtcaaa 641
Score = 196 bits (99), Expect = 1e-048
Identities = 213/251 (84%)
Strand = Plus / Plus
Query: 209 ggcagggtccctctcgtcatggccttcctctcctgcctcgcctggctctacgtcgccggc 268
||||||||||| |||||||||||||||||| |||||||||||||| | ||||||||||||
Sbjct: 34 ggcagggtccccctcgtcatggccttcctcgcctgcctcgcctgggtgtacgtcgccggc 93
Query: 269 cgtttgtggcaggacgcgcagacccgggcgatcctgtccggcctcctcgagaagagctct 328
|| | ||||||||||||||||||||||| ||||| ||||||||||||||||||| | |
Sbjct: 94 cggctatggcaggacgcgcagacccgggccatcctctccggcctcctcgagaagaacacc 153
Query: 329 accagcgtcccgaaggtgctctcggtggaggacaagcttaggaaccttgggtgcaaggcg 388
|| |||| |||| | |||||||||| |||||||| ||| |||| || |||| | |
Sbjct: 154 ggcaatctccccaaggagatctcggtggacgacaagctgagggacctcggatgcactggg 213
Query: 389 attggaaggaaaattgttgaggcggagatggacctgaccaaggccaagagcgaggggtac 448
||||| ||||| || | ||||||||||||||| | ||||||| |||||||||||||||
Sbjct: 214 attgggaggaagatcgccgaggcggagatggacattgccaaggcgaagagcgaggggtac 273
Query: 449 ctgtgggggaa 459
||||||||||
Sbjct: 274 ttgtgggggaa 284
>gb|BE060861.3|BE060861 HVSMEg0013K01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0013K01f, mRNA sequence
Length = 628
Score = 244 bits (123), Expect = 7e-063
Identities = 292/348 (83%), Gaps = 3/348 (0%)
Strand = Plus / Plus
Query: 115 cgccgccatggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggcccc 174
||||||||||||||||||||||||||||||||||||||| |||||||| | |||| ||||
Sbjct: 22 cgccgccatggagacgctggccagcgccatgcggcgcgacaaccgccgcttcaagccccc 81
Query: 175 gccctcctcctctgcttcctccgccctcgcctcgg---gcagggtccctctcgtcatggc 231
|||||||||| | ||||||||| |||||| | |||||||||| |||||||||||
Sbjct: 82 atcctcctcctcctcctcctccgccgccgcctccgccggcagggtccccctcgtcatggc 141
Query: 232 cttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgcagac 291
||||||| |||||||||||||| | |||||||||||||| | |||||||||||||||||
Sbjct: 142 cttcctcgcctgcctcgcctgggtgtacgtcgccggccggctatggcaggacgcgcagac 201
Query: 292 ccgggcgatcctgtccggcctcctcgagaagagctctaccagcgtcccgaaggtgctctc 351
|||||| ||||| ||||||||||||||||||| | | || |||| |||| | ||||
Sbjct: 202 ccgggccatcctctccggcctcctcgagaagaacaccggcaatctccccaaggagatctc 261
Query: 352 ggtggaggacaagcttaggaaccttgggtgcaaggcgattggaaggaaaattgttgaggc 411
|||||| |||||||| ||| |||| || |||| | |||||| ||||| || | |||||
Sbjct: 262 ggtggacgacaagctgagggacctcggatgcactgggattgggaggaagatcgccgaggc 321
Query: 412 ggagatggacctgaccaaggccaagagcgaggggtacctgtgggggaa 459
|||||||||| | |||| | ||| |||||||||||| ||| ||||||
Sbjct: 322 ggagatggacatngccaaaggcaaaagcgaggggtacttgtaggggaa 369
>gb|AL502019.1|AL502019 AL502019 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06D11u 3', mRNA sequence
Length = 526
Score = 238 bits (120), Expect = 4e-061
Identities = 216/248 (87%)
Strand = Plus / Minus
Query: 881 ttgtacatgggttgtatgaaatcagggatggtcataagtgaagagggccaacaatggtat 940
||||||||||| || ||||||||||| ||| | |||||||||| ||||||||||||
Sbjct: 511 ttgtacatgggctgcatgaaatcaggagctgtcgttagtgaagaggagcaacaatggtat 452
Query: 941 gaacctgagtggtggaaatttggagattcaaaaacgtattttcgacacgcttctggttct 1000
|||||||| |||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct: 451 gaacctgaatggtggaaatttggagattcaaggacgtattttcgccatgcttctggttct 392
Query: 1001 ttgtttatcctctcaaaaaatttggctcgctacatcaacataaatagtgcgtcactgcag 1060
|| |||||||||||||| |||||||||||||||||||||||||| ||||| || |||||
Sbjct: 391 ttatttatcctctcaaacaatttggctcgctacatcaacataaacagtgcatcgctgcaa 332
Query: 1061 agttatgcacacgatgatatatcagtaggttcatggatgatgggactgaatgcaacttac 1120
|| ||||| || || || ||||| || ||||||||||||||||| || ||||| ||||||
Sbjct: 331 agctatgcgcatgacgacatatcggttggttcatggatgatggggcttaatgccacttac 272
Query: 1121 gtggatga 1128
|| |||||
Sbjct: 271 gttgatga 264
>gb|BU994960.1|BU994960 HM08L24r HM Hordeum vulgare subsp. vulgare cDNA clone HM08L24
5-PRIME, mRNA sequence
Length = 582
Score = 230 bits (116), Expect = 1e-058
Identities = 188/212 (88%)
Strand = Plus / Plus
Query: 917 agtgaagagggccaacaatggtatgaacctgagtggtggaaatttggagattcaaaaacg 976
|||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 70 agtgaagaggagcaacaatggtatgaacctgaatggtggaaatttggagattcaaggacg 129
Query: 977 tattttcgacacgcttctggttctttgtttatcctctcaaaaaatttggctcgctacatc 1036
|||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 130 tattttcgccatgcttctggttctttatttatcctctcaaacaatttggctcgctacatc 189
Query: 1037 aacataaatagtgcgtcactgcagagttatgcacacgatgatatatcagtaggttcatgg 1096
|||||||| ||||| || ||||| || ||||| || || || ||||| || |||||||||
Sbjct: 190 aacataaacagtgcatcgctgcaaagctatgcgcatgacgacatatcggttggttcatgg 249
Query: 1097 atgatgggactgaatgcaacttacgtggatga 1128
|||||||| || ||||| |||||||| |||||
Sbjct: 250 atgatggggcttaatgccacttacgttgatga 281
>gb|BJ469249.1|BJ469249 BJ469249 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal13n22 5', mRNA sequence
Length = 321
Score = 79.8 bits (40), Expect = 2e-013
Identities = 85/100 (85%)
Strand = Plus / Plus
Query: 1029 gctacatcaacataaatagtgcgtcactgcagagttatgcacacgatgatatatcagtag 1088
|||||||||||||||| ||||| || ||||| || ||||| || || || ||||| || |
Sbjct: 2 gctacatcaacataaacagtgcatcgctgcaaagctatgcgcatgacgacatatcggttg 61
Query: 1089 gttcatggatgatgggactgaatgcaacttacgtggatga 1128
|||||||||||||||| || ||||| |||||||| |||||
Sbjct: 62 gttcatggatgatggggcttaatgccacttacgttgatga 101
>gb|BJ474454.1|BJ474454 BJ474454 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal13n22 3', mRNA sequence
Length = 256
Score = 79.8 bits (40), Expect = 2e-013
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 1029 gctacatcaacataaatagtgcgtcactgcagagttatgcacacgatgatatatcagtag 1088
|||||||||||||||| ||||| || ||||| || ||||| || || || ||||| || |
Sbjct: 255 gctacatcaacataaacagtgcatcgctgcaaagctatgcgcatgacgacatatcggttg 196
Query: 1089 gttcatggatgatgggactgaatgcaacttacgtggatga 1128
|||||||||||||||| || ||||| |||||||| |||||
Sbjct: 195 gttcatggatgatggggcttaatgccacttacgttgatga 156
>gb|BJ477488.1|BJ477488 BJ477488 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal41k17 3', mRNA sequence
Length = 269
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/100 (81%)
Strand = Plus / Minus
Query: 1029 gctacatcaacataaatagtgcgtcactgcagagttatgcacacgatgatatatcagtag 1088
|||||||| |||||| ||||| || ||||| || ||||| | | || ||||| || |
Sbjct: 261 gctacatcgacataancagtgcatcgctgcaaagctatgcgnatnacgacatatcggttg 202
Query: 1089 gttcatggatgatgggactgaatgcaacttacgtggatga 1128
|||||||||||||||| || ||||| |||||||| |||||
Sbjct: 201 gttcatggatgatggggcttaatgccacttacgttgatga 162
>gb|AJ463344.1|AJ463344 AJ463344 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200058A04F1, mRNA sequence
Length = 180
Score = 52.0 bits (26), Expect = 5e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 1079 atatcagtaggttcatggatgatgggactgaatgcaacttacgtggatga 1128
||||| || ||||||||||||||||| || ||||| |||||||| |||||
Sbjct: 28 atatcggttggttcatggatgatggggcttaatgccacttacgttgatga 77
>gb|AL510472.1|AL510472 AL510472 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05A15u 3',
mRNA sequence
Length = 378
Score = 48.1 bits (24), Expect = 8e-004
Identities = 122/156 (78%)
Strand = Plus / Minus
Query: 1036 caacataaatagtgcgtcactgcagagttatgcacacgatgatatatcagtaggttcatg 1095
||||||||| ||||| || ||||| || ||||| || || || ||||| || | | ||||
Sbjct: 378 caacataaacagtgcatcgctgcaaagctatgcgcatgacgacatatcggttgntncatg 319
Query: 1096 gatgatgggactgaatgcaacttacgtggatgatgaccggttgtgctgcagcagttccag 1155
||||||||| || ||||| |||||||| ||||| || || |||| ||| ||| ||
Sbjct: 318 gatgatggggcttaatgccacttacgttgatgacgatcgtctgtgttgcctcagntcngt 259
Query: 1156 acaagagaaaatctgttccaatgcttgagcggaagg 1191
|||||||||| | ||||||| | |||||||||||
Sbjct: 258 acaagagaaagtatgttccatcggatgagcggaagg 223
>gb|BE602462.1|BE602462 HVSMEh0098P18f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0098P18f, mRNA sequence
Length = 576
Score = 42.1 bits (21), Expect = 0.048
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 785 tgggatgcagaattttatgtcaaagttga 813
||||||||||| |||||||| ||||||||
Sbjct: 133 tgggatgcagatttttatgtgaaagttga 161
>gb|BF628143.2|BF628143 HVSMEb0003E01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0003E01f, mRNA sequence
Length = 499
Score = 42.1 bits (21), Expect = 0.048
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 785 tgggatgcagaattttatgtcaaagttga 813
||||||||||| |||||||| ||||||||
Sbjct: 198 tgggatgcagatttttatgtgaaagttga 226
>gb|AV916696.1|AV916696 AV916696 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19f02 5', mRNA sequence
Length = 652
Score = 42.1 bits (21), Expect = 0.048
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 935 tggtatgaacctgagtggtggaaatttgg 963
||||||||||| || ||||||||||||||
Sbjct: 546 tggtatgaaccagattggtggaaatttgg 574
>gb|AV921988.1|AV921988 AV921988 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19f02 3', mRNA sequence
Length = 680
Score = 42.1 bits (21), Expect = 0.048
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 935 tggtatgaacctgagtggtggaaatttgg 963
||||||||||| || ||||||||||||||
Sbjct: 512 tggtatgaaccagattggtggaaatttgg 484
>gb|BQ471523.1|BQ471523 HV02L02r HV Hordeum vulgare subsp. vulgare cDNA clone HV02L02
5-PRIME, mRNA sequence
Length = 482
Score = 42.1 bits (21), Expect = 0.048
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 201 tcgcctcgggcagggtccctc 221
|||||||||||||||||||||
Sbjct: 164 tcgcctcgggcagggtccctc 184
>gb|BM099145.2|BM099145 EBes01_SQ002_F19_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ002_F19 5', mRNA sequence
Length = 566
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 620 cgttttgttattggtcggagtgcaaatc 647
|||||||||||||| || ||||||||||
Sbjct: 503 cgttttgttattggacgaagtgcaaatc 530
>gb|BU972406.1|BU972406 HB21I22r BC Hordeum vulgare subsp. vulgare cDNA clone HB21I22
5-PRIME, mRNA sequence
Length = 433
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 255 tctacgtcgccggccgtttgtggcagga 282
|||||||||| ||||| |||||||||||
Sbjct: 99 tctacgtcgctggccgattgtggcagga 126
>gb|BU989150.1|BU989150 HF19P04r HF Hordeum vulgare subsp. vulgare cDNA clone HF19P04
5-PRIME, mRNA sequence
Length = 657
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 255 tctacgtcgccggccgtttgtggcagga 282
|||||||||| ||||| |||||||||||
Sbjct: 47 tctacgtcgctggccgattgtggcagga 74
>gb|BU999478.1|BU999478 HI14K06r HI Hordeum vulgare subsp. vulgare cDNA clone HI14K06
5-PRIME, mRNA sequence
Length = 604
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 620 cgttttgttattggtcggagtgcaaatc 647
|||||||||||||| || ||||||||||
Sbjct: 496 cgttttgttattggacgaagtgcaaatc 523
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 164,241
Number of Sequences: 312970
Number of extensions: 164241
Number of successful extensions: 45437
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45374
Number of HSP's gapped (non-prelim): 53
length of query: 1380
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1361
effective length of database: 169,188,109
effective search space: 230265016349
effective search space used: 230265016349
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)