BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419155.2.3
(1354 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK123020.1|CK123020 BES1824101m04 BES1824 Hordeum vulgar... 801 0.0
gb|AV833597.1|AV833597 AV833597 K. Sato unpublished cDNA li... 583 e-165
gb|BM377914.2|BM377914 EBem04_SQ004_J05_R embryo, 12 DPA, n... 297 5e-079
gb|BI950958.1|BI950958 HVSMEl0023N01f Hordeum vulgare spike... 254 7e-066
gb|BU979667.1|BU979667 HA16O02r HA Hordeum vulgare subsp. v... 232 2e-059
gb|BG300619.2|BG300619 HVSMEb0017L12f Hordeum vulgare seedl... 149 3e-034
gb|BQ462912.1|BQ462912 HI02G10r HI Hordeum vulgare subsp. v... 82 5e-014
gb|CA030163.1|CA030163 HX06E08r HX Hordeum vulgare subsp. v... 82 5e-014
gb|BU979997.1|BU979997 HA18C17r HA Hordeum vulgare subsp. v... 72 5e-011
gb|BJ462834.1|BJ462834 BJ462834 K. Sato unpublished cDNA li... 66 3e-009
gb|CA030562.1|CA030562 HX07G20r HX Hordeum vulgare subsp. v... 66 3e-009
gb|CA032586.1|CA032586 HX13I20r HX Hordeum vulgare subsp. v... 66 3e-009
gb|BG365431.1|BG365431 HVSMEi0002K12f Hordeum vulgare 20 DA... 64 1e-008
gb|BJ469039.1|BJ469039 BJ469039 K. Sato unpublished cDNA li... 62 5e-008
gb|CA032344.1|CA032344 HX12L20r HX Hordeum vulgare subsp. v... 58 8e-007
gb|CA032588.1|CA032588 HX13I24r HX Hordeum vulgare subsp. v... 58 8e-007
gb|BF624697.2|BF624697 HVSMEa0017H24f Hordeum vulgare seedl... 50 2e-004
gb|BJ464400.1|BJ464400 BJ464400 K. Sato unpublished cDNA li... 50 2e-004
gb|BQ458970.1|BQ458970 HA02L10r HA Hordeum vulgare subsp. v... 50 2e-004
gb|BU988468.1|BU988468 HF17L18r HF Hordeum vulgare subsp. v... 50 2e-004
gb|BF625817.3|BF625817 HVSMEa0013L10f Hordeum vulgare seedl... 46 0.003
gb|BF262542.3|BF262542 HV_CEa0004E14f Hordeum vulgare seedl... 46 0.003
gb|BJ469852.1|BJ469852 BJ469852 K. Sato unpublished cDNA li... 46 0.003
gb|BU983122.1|BU983122 HA28K01r HA Hordeum vulgare subsp. v... 46 0.003
gb|BU983273.1|BU983273 HA29C12r HA Hordeum vulgare subsp. v... 46 0.003
gb|CA013726.1|CA013726 HT09E24r HT Hordeum vulgare subsp. v... 46 0.003
gb|CA021247.1|CA021247 HZ39I18r HZ Hordeum vulgare subsp. v... 46 0.003
gb|CA032219.1|CA032219 HX12G03r HX Hordeum vulgare subsp. v... 46 0.003
gb|BM371015.2|BM371015 EBro04_SQ003_D16_R root, 3 week, sal... 44 0.012
gb|BI956523.1|BI956523 HVSMEn0003O17f Hordeum vulgare rachi... 42 0.047
gb|BF264315.2|BF264315 HV_CEa0009B14f Hordeum vulgare seedl... 42 0.047
gb|BF258979.3|BF258979 HVSMEf0017E08f Hordeum vulgare seedl... 42 0.047
gb|CB882697.1|CB882697 HL02J13w HL Hordeum vulgare subsp. v... 42 0.047
gb|CB883630.1|CB883630 HQ02N03w HQ Hordeum vulgare subsp. v... 40 0.19
gb|CK125574.1|CK125574 BES1824109b13 BES1824 Hordeum vulgar... 40 0.19
>gb|CK123020.1|CK123020 BES1824101m04 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M041 5-PRIME, mRNA sequence
Length = 716
Score = 801 bits (404), Expect = 0.0
Identities = 540/584 (92%), Gaps = 1/584 (0%)
Strand = Plus / Plus
Query: 313 ggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggaggacgagggcgt 372
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggccaccaacgagaccatcgcactcaagaagatccgcctcgagcaggaggacgagggcgt 60
Query: 373 cccgtccaccgccatccgcgagatctctctcctcaaggagatgaaccacggcaacatcgt 432
||| ||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||||
Sbjct: 61 cccctccaccgccatccgcgagatctcgctcctcaaggagatgcagcaccgcaacatcgt 120
Query: 433 cagattacatgatgttgtccacagcgagaagcgcatataccttgtcttcgagtacctgga 492
|| | || |||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 121 caagctgcacgatgttgtccacagcgagaagcgcatatggctcgtcttcgagtacctgga 180
Query: 493 tctggacctcaagaagttcatggactcctgcccggagtttgctaagaatcccactttgat 552
||||||||| ||||||||||||||||||||||| |||||||| |||| |||| | |||||
Sbjct: 181 tctggacctgaagaagttcatggactcctgcccagagtttgccaagagtcccgccttgat 240
Query: 553 caagtcatacctctaccagatactccgtggtgttgcgtactgccattctcatagagttct 612
||||||||||||||| |||||||||||||| ||||| || || |||||||||||||||||
Sbjct: 241 caagtcatacctctatcagatactccgtggcgttgcttattgtcattctcatagagttct 300
Query: 613 tcaccgagatttgaaacctcagaacttattgatagatcggcgcactaatgcactgaagct 672
||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 301 tcatcgagatttgaaacctcagaatttattgatagaccggcgtactaatgcactgaagct 360
Query: 673 tgcagactttggtttagccagggcatttggaattcctgtccgtacatttactcatgaggt 732
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgcagactttggtttagcaagggcatttggaattcctgtccgtacatttactcatgaggt 420
Query: 733 agtgacattatggtacagagctccagaaattctgcttggagcgaggcagtattccacacc 792
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 421 agtgacattatggtacagagctccagaaatccttcttggagcgaggcagtattccacacc 480
Query: 793 agttgatgtgtggtctgtgggctgtatctttgcggaaatggtgaaccaaaagccact-at 851
|||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||| |
Sbjct: 481 agttgacgtgtggtcagtgggctgtatctttgcagaaatggtgaaccagaagccactggt 540
Query: 852 tccctggcgattctgagatcgacgaactttttaagatattcagg 895
||||||||||||||||||| || ||| | |||||||| ||||||
Sbjct: 541 tccctggcgattctgagattgatgaattatttaagatcttcagg 584
>gb|AV833597.1|AV833597 AV833597 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags16e07, mRNA sequence
Length = 450
Score = 583 bits (294), Expect = e-165
Identities = 396/430 (92%)
Strand = Plus / Plus
Query: 279 gcacgtacggggtggtgtacaaggcgctggacaaggccaccaacgagacgatcgcgctca 338
||||||||||||||||||||||||| | ||||| ||||||||||||||| ||||| ||||
Sbjct: 21 gcacgtacggggtggtgtacaaggcccgggacagggccaccaacgagaccatcgcactca 80
Query: 339 agaagatccgcctcgagcaggaggacgagggcgtcccgtccaccgccatccgcgagatct 398
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 81 agaagatccgcctcgagcaggaggacgagggcgtcccctccaccgccatccgcgagatct 140
Query: 399 ctctcctcaaggagatgaaccacggcaacatcgtcagattacatgatgttgtccacagcg 458
| ||||||||||||||| | ||| |||||||||||| | || ||||||||||||||||
Sbjct: 141 cgctcctcaaggagatgcagcaccgcaacatcgtcaagctgcacgatgttgtccacagcg 200
Query: 459 agaagcgcatataccttgtcttcgagtacctggatctggacctcaagaagttcatggact 518
|||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 agaagcgcatatggctcgtcttcgagtacctggatctggacctgaagaagttcatggact 260
Query: 519 cctgcccggagtttgctaagaatcccactttgatcaagtcatacctctaccagatactcc 578
||||||| |||||||| |||| |||| | |||||||||||||||||||| ||||||||||
Sbjct: 261 cctgcccagagtttgccaagagtcccgccttgatcaagtcatacctctatcagatactcc 320
Query: 579 gtggtgttgcgtactgccattctcatagagttcttcaccgagatttgaaacctcagaact 638
|||| ||||| || || |||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 321 gtggcgttgcttattgtcattctcatagagttcttcatcgagatttgaaacctcagaatt 380
Query: 639 tattgatagatcggcgcactaatgcactgaagcttgcagactttggtttagccagggcat 698
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tattgatagaccggcgtactaatgcactgaagcttgcagactttggtttagcaagggcat 440
Query: 699 ttggaattcc 708
||||||||||
Sbjct: 441 ttggaattcc 450
>gb|BM377914.2|BM377914 EBem04_SQ004_J05_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ004_J05 5', mRNA sequence
Length = 583
Score = 297 bits (150), Expect = 5e-079
Identities = 249/282 (88%)
Strand = Plus / Plus
Query: 247 gcagtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgct 306
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3 gcagtacgagaaggtggagaagatcggggagggaacgtacggggtggtgtacaaggccaa 62
Query: 307 ggacaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggaggacga 366
|||| ||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 63 ggaccgctacaccaacgagacgatcgcgctcaagaagatccggctggagcaggaggacga 122
Query: 367 gggcgtcccgtccaccgccatccgcgagatctctctcctcaaggagatgaaccacggcaa 426
||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||| | ||
Sbjct: 123 gggcgtcccctccaccgccatccgcgagatctccctcctcaaggagatgcagcaccgtaa 182
Query: 427 catcgtcagattacatgatgttgtccacagcgagaagcgcatataccttgtcttcgagta 486
||||||||| | || || || || |||| ||||||| |||||||||| |||||||||||
Sbjct: 183 catcgtcaggctgcacgacgtggtgcacaacgagaagtgcatatacctcgtcttcgagta 242
Query: 487 cctggatctggacctcaagaagttcatggactcctgcccgga 528
||| || || |||||||||||| ||||||||||| ||||||
Sbjct: 243 cctcgacctcgacctcaagaagcacatggactcctccccgga 284
>gb|BI950958.1|BI950958 HVSMEl0023N01f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023N01f, mRNA sequence
Length = 469
Score = 254 bits (128), Expect = 7e-066
Identities = 247/287 (86%)
Strand = Plus / Plus
Query: 242 atggagcagtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaag 301
||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 31 atggaccactacgagaaggtggagaagatcggggagggaacgtacggggtggtgtacaag 90
Query: 302 gcgctggacaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 361
|| ||| |||||||||||||||||| |||||||||||||| || ||||| |||
Sbjct: 91 gccaatgaccgctacaccaacgagacgatcgccctcaagaagatccggctggagcaagag 150
Query: 362 gacgagggcgtcccgtccaccgccatccgcgagatctctctcctcaaggagatgaaccac 421
||||||||||| || ||||||| ||||||||||||||| ||||||||||||||| | |||
Sbjct: 151 gacgagggcgtnccctccaccgtcatccgcgagatctccctcctcaaggagatgcatcac 210
Query: 422 ggcaacatcgtcagattacatgatgttgtccacagcgagaagcgcatataccttgtcttc 481
| ||||||||||| | || || || || |||| ||||||| |||||||||| ||||||
Sbjct: 211 cgtaacatcgtcaggctgcaagacgtggtgcacaacgagaagtgcatatacctcgtcttc 270
Query: 482 gagtacctggatctggacctcaagaagttcatggactcctgcccgga 528
|||||||| || || |||||||||||| ||||||||||| ||||||
Sbjct: 271 gagtacctcgacctcgacctcaagaagcacatggactcctccccgga 317
>gb|BU979667.1|BU979667 HA16O02r HA Hordeum vulgare subsp. vulgare cDNA clone HA16O02
5-PRIME, mRNA sequence
Length = 516
Score = 232 bits (117), Expect = 2e-059
Identities = 189/213 (88%)
Strand = Plus / Plus
Query: 316 caccaacgagacgatcgcgctcaagaagatccgcctcgagcaggaggacgagggcgtccc 375
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 41 caccaacgagacgatcgcgctcaagaagatccggctggagcaggaggacgagggcgtccc 100
Query: 376 gtccaccgccatccgcgagatctctctcctcaaggagatgaaccacggcaacatcgtcag 435
||||||||||||||||||||||| ||||||||||||||| | ||| | |||||||||||
Sbjct: 101 ctccaccgccatccgcgagatctccctcctcaaggagatgcagcaccgtaacatcgtcag 160
Query: 436 attacatgatgttgtccacagcgagaagcgcatataccttgtcttcgagtacctggatct 495
| || || || || |||| ||||||| |||||||||| |||||||||||||| || ||
Sbjct: 161 gctgcaggacgtggtgcacaacgagaagtgcatatacctcgtcttcgagtacctcgacct 220
Query: 496 ggacctcaagaagttcatggactcctgcccgga 528
|||||||||||| ||||||||||| ||||||
Sbjct: 221 cgacctcaagaagcacatggactcctccccgga 253
Score = 93.7 bits (47), Expect = 1e-017
Identities = 119/143 (83%)
Strand = Plus / Plus
Query: 644 atagatcggcgcactaatgcactgaagcttgcagactttggtttagccagggcatttgga 703
|||||||| ||||| ||| | |||||||||| ||||| || || |||||||| || ||
Sbjct: 366 atagatcgccgcaccaattcgttgaagcttgctgacttcggattggccagggcgttcggc 425
Query: 704 attcctgtccgtacatttactcatgaggtagtgacattatggtacagagctccagaaatt 763
||||||||| | ||||| ||||||||||| || ||||||||| ||||||| |||||||||
Sbjct: 426 attcctgtcaggacattcactcatgaggtggtaacattatgggacagagcgccagaaatt 485
Query: 764 ctgcttggagcgaggcagtattc 786
|| || || || ||||| |||||
Sbjct: 486 cttctgggtgcaaggcaatattc 508
>gb|BG300619.2|BG300619 HVSMEb0017L12f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017L12f, mRNA sequence
Length = 622
Score = 149 bits (75), Expect = 3e-034
Identities = 207/251 (82%)
Strand = Plus / Plus
Query: 644 atagatcggcgcactaatgcactgaagcttgcagactttggtttagccagggcatttgga 703
|||||||| ||||| ||| | |||||||||| ||||| || || |||||||| || ||
Sbjct: 183 atagatcgccgcaccaattcgttgaagcttgctgacttcggattggccagggcgttcggc 242
Query: 704 attcctgtccgtacatttactcatgaggtagtgacattatggtacagagctccagaaatt 763
||||||||| | ||||| ||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 243 attcctgtcaggacattcactcatgaggtggtaacattatggtacagagcgccagaaatt 302
Query: 764 ctgcttggagcgaggcagtattccacaccagttgatgtgtggtctgtgggctgtatcttt 823
|| || || || ||||| ||||| || || |||||||||||||| || || || || |||
Sbjct: 303 cttctgggtgcaaggcaatattctacccctgttgatgtgtggtcggttggttgcattttt 362
Query: 824 gcggaaatggtgaaccaaaagccactattccctggcgattctgagatcgacgaacttttt 883
|| ||||||||||| || || || |||| ||||| ||||||||||| || ||||| ||
Sbjct: 363 gctgaaatggtgaatcagaaacctttatttcctggtgattctgagattgatgaactcttc 422
Query: 884 aagatattcag 894
||||| |||||
Sbjct: 423 aagattttcag 433
Score = 71.9 bits (36), Expect = 5e-011
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 465 gcatataccttgtcttcgagtacctggatctggacctcaagaagttcatggactcctgcc 524
|||||||||| |||||||||||||| || || |||||||||||| ||||||||||| ||
Sbjct: 7 gcatatacctcgtcttcgagtacctcgacctcgacctcaagaagcacatggactcctccc 66
Query: 525 cgga 528
||||
Sbjct: 67 cgga 70
>gb|BQ462912.1|BQ462912 HI02G10r HI Hordeum vulgare subsp. vulgare cDNA clone HI02G10
5-PRIME, mRNA sequence
Length = 667
Score = 81.8 bits (41), Expect = 5e-014
Identities = 134/165 (81%)
Strand = Plus / Plus
Query: 242 atggagcagtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaag 301
|||||| ||||||||||| |||||||| ||||||||||||| ||||| |||||| |||
Sbjct: 75 atggagaagtacgagaagctggagaaggtcggggagggcacctacggcaaggtgtataag 134
Query: 302 gcgctggacaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 361
||| |||||||||| || | || | | ||||||||||||| |||||| ||| |||
Sbjct: 135 gcgatggacaaggcgacgggccaggtggtggcgctcaagaagacccgcctggagatggac 194
Query: 362 gacgagggcgtcccgtccaccgccatccgcgagatctctctcctc 406
||||| || ||||| ||||||| |||| |||||||| ||||||
Sbjct: 195 gacgaagggatcccgcccaccgcgctccgtgagatctccctcctc 239
Score = 40.1 bits (20), Expect = 0.19
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 743 tggtacagagctccagaaattctgcttggagc 774
|||||||||||||| ||| | |||||||||||
Sbjct: 621 tggtacagagctcctgaagtactgcttggagc 652
>gb|CA030163.1|CA030163 HX06E08r HX Hordeum vulgare subsp. vulgare cDNA clone HX06E08
5-PRIME, mRNA sequence
Length = 598
Score = 81.8 bits (41), Expect = 5e-014
Identities = 134/165 (81%)
Strand = Plus / Plus
Query: 242 atggagcagtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaag 301
|||||| ||||||||||| |||||||| ||||||||||||| ||||| |||||| |||
Sbjct: 104 atggagaagtacgagaagctggagaaggtcggggagggcacctacggcaaggtgtataag 163
Query: 302 gcgctggacaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 361
||| |||||||||| || | || | | ||||||||||||| |||||| ||| |||
Sbjct: 164 gcgatggacaaggcgacgggccaggtggtggcgctcaagaagacccgcctggagatggac 223
Query: 362 gacgagggcgtcccgtccaccgccatccgcgagatctctctcctc 406
||||| || ||||| ||||||| |||| |||||||| ||||||
Sbjct: 224 gacgaagggatcccgcccaccgcgctccgtgagatctccctcctc 268
>gb|BU979997.1|BU979997 HA18C17r HA Hordeum vulgare subsp. vulgare cDNA clone HA18C17
5-PRIME, mRNA sequence
Length = 524
Score = 71.9 bits (36), Expect = 5e-011
Identities = 114/140 (81%)
Strand = Plus / Plus
Query: 755 ccagaaattctgcttggagcgaggcagtattccacaccagttgatgtgtggtctgtgggc 814
||||||||||| || || || ||||| ||||| || || |||||||||||||| || ||
Sbjct: 14 ccagaaattcttctgggtgcaaggcaatattctacccctgttgatgtgtggtcggttggt 73
Query: 815 tgtatctttgcggaaatggtgaaccaaaagccactattccctggcgattctgagatcgac 874
|| || ||||| ||||||||||| || || || |||| ||||| ||||||||||| ||
Sbjct: 74 tgcatttttgctgaaatggtgaatcagaaacctttatttcctggtgattctgagattgat 133
Query: 875 gaactttttaagatattcag 894
||||| || ||||| |||||
Sbjct: 134 gaactcttcaagattttcag 153
>gb|BJ462834.1|BJ462834 BJ462834 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24j18 5', mRNA sequence
Length = 683
Score = 65.9 bits (33), Expect = 3e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 251 tacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggc 303
||||||||| |||||||| ||||||||||||| |||||| ||||||||||||
Sbjct: 57 tacgagaagctggagaaggtcggggagggcacctacgggaaggtgtacaaggc 109
Score = 40.1 bits (20), Expect = 0.19
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 470 taccttgtcttcgagtacctggatctggacctcaagaagttcat 513
||||| |||||||||||| |||| |||||||||||||||||
Sbjct: 294 tacctcgtcttcgagtacatggacaccgacctcaagaagttcat 337
>gb|CA030562.1|CA030562 HX07G20r HX Hordeum vulgare subsp. vulgare cDNA clone HX07G20
5-PRIME, mRNA sequence
Length = 499
Score = 65.9 bits (33), Expect = 3e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 251 tacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggc 303
||||||||| |||||||| ||||||||||||| |||||| ||||||||||||
Sbjct: 142 tacgagaagctggagaaggtcggggagggcacctacgggaaggtgtacaaggc 194
Score = 40.1 bits (20), Expect = 0.19
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 470 taccttgtcttcgagtacctggatctggacctcaagaagttcat 513
||||| |||||||||||| |||| |||||||||||||||||
Sbjct: 379 tacctcgtcttcgagtacatggacaccgacctcaagaagttcat 422
>gb|CA032586.1|CA032586 HX13I20r HX Hordeum vulgare subsp. vulgare cDNA clone HX13I20
5-PRIME, mRNA sequence
Length = 431
Score = 65.9 bits (33), Expect = 3e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 251 tacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggc 303
||||||||| |||||||| ||||||||||||| |||||| ||||||||||||
Sbjct: 141 tacgagaagctggagaaggtcggggagggcacctacgggaaggtgtacaaggc 193
Score = 40.1 bits (20), Expect = 0.19
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 470 taccttgtcttcgagtacctggatctggacctcaagaagttcat 513
||||| |||||||||||| |||| |||||||||||||||||
Sbjct: 378 tacctcgtcttcgagtacatggacaccgacctcaagaagttcat 421
>gb|BG365431.1|BG365431 HVSMEi0002K12f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002K12f, mRNA sequence
Length = 769
Score = 63.9 bits (32), Expect = 1e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 465 gcatataccttgtcttcgagtacctggatctggacctcaagaagttcatggactcctgcc 524
|||||||||| |||||||||||||| || || |||||||| ||| ||||||||||| ||
Sbjct: 7 gcatatacctcgtcttcgagtacctcgacctcgacctcaaaaagcacatggactcctccc 66
Query: 525 cgga 528
||||
Sbjct: 67 cgga 70
>gb|BJ469039.1|BJ469039 BJ469039 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12l17 5', mRNA sequence
Length = 602
Score = 61.9 bits (31), Expect = 5e-008
Identities = 128/159 (80%), Gaps = 1/159 (0%)
Strand = Plus / Plus
Query: 249 agtacgag-aaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgctg 307
|||||||| ||| |||||||| ||||||||||||| ||||| |||||| |||||| ||
Sbjct: 14 agtacgagnaagctggagaaggtcggggagggcacctacggcaaggtgtataaggcgatg 73
Query: 308 gacaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggaggacgag 367
|||||||| || | || | | ||||||||||||| |||||| ||| ||| |||||
Sbjct: 74 gacaaggcgacgggccaggtggtggcgctcaagaagacccgcctggagatggacgacgaa 133
Query: 368 ggcgtcccgtccaccgccatccgcgagatctctctcctc 406
|| ||||| ||||||| |||| |||||||| ||||||
Sbjct: 134 gggatcccgcccaccgcgctccgtgagatctccctcctc 172
Score = 40.1 bits (20), Expect = 0.19
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 743 tggtacagagctccagaaattctgcttggagc 774
|||||||||||||| ||| | |||||||||||
Sbjct: 554 tggtacagagctcctgaagtactgcttggagc 585
>gb|CA032344.1|CA032344 HX12L20r HX Hordeum vulgare subsp. vulgare cDNA clone HX12L20
5-PRIME, mRNA sequence
Length = 484
Score = 58.0 bits (29), Expect = 8e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 249 agtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgc 305
||||||||||| |||||||| | ||||||||||| ||||| ||||||||||||||
Sbjct: 40 agtacgagaagctggagaaggtgggggagggcacctacggcaaggtgtacaaggcgc 96
Score = 46.1 bits (23), Expect = 0.003
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 332 gcgctcaagaagatccgcctcgagcaggaggacgagggcgtcccgtccaccgccatccgc 391
||||||||||||| |||||||||| ||| || ||||| ||||| ||||||| | |||
Sbjct: 123 gcgctcaagaagacccgcctcgagatggacgaggaggggatcccgcccaccgcgctgcgc 182
Query: 392 gagatctctctcctc 406
||||| || ||||||
Sbjct: 183 gagatatccctcctc 197
>gb|CA032588.1|CA032588 HX13I24r HX Hordeum vulgare subsp. vulgare cDNA clone HX13I24
5-PRIME, mRNA sequence
Length = 285
Score = 58.0 bits (29), Expect = 8e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 251 tacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggc 303
||||||||| |||| ||| ||||||||||||| |||||| ||||||||||||
Sbjct: 19 tacgagaagctggacaaggtcggggagggcacctacgggaaggtgtacaaggc 71
>gb|BF624697.2|BF624697 HVSMEa0017H24f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0017H24f, mRNA sequence
Length = 808
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 795 ttgatgtgtggtctgtgggctgtat 819
|||||||||||||||||||||||||
Sbjct: 401 ttgatgtgtggtctgtgggctgtat 425
>gb|BJ464400.1|BJ464400 BJ464400 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34c14 5', mRNA sequence
Length = 644
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 795 ttgatgtgtggtctgtgggctgtat 819
|||||||||||||||||||||||||
Sbjct: 490 ttgatgtgtggtctgtgggctgtat 514
>gb|BQ458970.1|BQ458970 HA02L10r HA Hordeum vulgare subsp. vulgare cDNA clone HA02L10
5-PRIME, mRNA sequence
Length = 621
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 795 ttgatgtgtggtctgtgggctgtat 819
|||||||||||||||||||||||||
Sbjct: 468 ttgatgtgtggtctgtgggctgtat 492
>gb|BU988468.1|BU988468 HF17L18r HF Hordeum vulgare subsp. vulgare cDNA clone HF17L18
5-PRIME, mRNA sequence
Length = 592
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 795 ttgatgtgtggtctgtgggctgtat 819
|||||||||||||||||||||||||
Sbjct: 393 ttgatgtgtggtctgtgggctgtat 417
>gb|BF625817.3|BF625817 HVSMEa0013L10f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0013L10f, mRNA sequence
Length = 520
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 246 agcagtacgagaaggtggagaagatcggggagggcacgtacgg 288
||||||||||| ||||| ||||||||| |||||||| |||||
Sbjct: 41 agcagtacgagctggtggggaagatcggcgagggcacctacgg 83
>gb|BF262542.3|BF262542 HV_CEa0004E14f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0004E14f, mRNA sequence
Length = 907
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 246 agcagtacgagaaggtggagaagatcggggagggcacgtacgg 288
||||||||||| ||||| ||||||||| |||||||| |||||
Sbjct: 195 agcagtacgagctggtggggaagatcggcgagggcacctacgg 237
>gb|BJ469852.1|BJ469852 BJ469852 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37n24 5', mRNA sequence
Length = 661
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 270 tcggggagggcacgtacggggtggtgtacaaggcg 304
||||||||||| ||| |||||| ||||||||||||
Sbjct: 14 tcggggagggcgcgttcggggtcgtgtacaaggcg 48
>gb|BU983122.1|BU983122 HA28K01r HA Hordeum vulgare subsp. vulgare cDNA clone HA28K01
5-PRIME, mRNA sequence
Length = 614
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 246 agcagtacgagaaggtggagaagatcggggagggcacgtacgg 288
||||||||||| ||||| ||||||||| |||||||| |||||
Sbjct: 203 agcagtacgagctggtggggaagatcggcgagggcacctacgg 245
>gb|BU983273.1|BU983273 HA29C12r HA Hordeum vulgare subsp. vulgare cDNA clone HA29C12
5-PRIME, mRNA sequence
Length = 600
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 246 agcagtacgagaaggtggagaagatcggggagggcacgtacgg 288
||||||||||| ||||| ||||||||| |||||||| |||||
Sbjct: 203 agcagtacgagctggtggggaagatcggcgagggcacctacgg 245
>gb|CA013726.1|CA013726 HT09E24r HT Hordeum vulgare subsp. vulgare cDNA clone HT09E24
5-PRIME, mRNA sequence
Length = 603
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 246 agcagtacgagaaggtggagaagatcggggagggcacgtacgg 288
||||||||||| ||||| ||||||||| |||||||| |||||
Sbjct: 203 agcagtacgagctggtggggaagatcggcgagggcacctacgg 245
>gb|CA021247.1|CA021247 HZ39I18r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ39I18
5-PRIME, mRNA sequence
Length = 639
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 246 agcagtacgagaaggtggagaagatcggggagggcacgtacgg 288
||||||||||| ||||| ||||||||| |||||||| |||||
Sbjct: 156 agcagtacgagctggtggggaagatcggcgagggcacctacgg 198
>gb|CA032219.1|CA032219 HX12G03r HX Hordeum vulgare subsp. vulgare cDNA clone HX12G03
5-PRIME, mRNA sequence
Length = 646
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 246 agcagtacgagaaggtggagaagatcggggagggcacgtacgg 288
||||||||||| ||||| ||||||||| |||||||| |||||
Sbjct: 252 agcagtacgagctggtggggaagatcggcgagggcacctacgg 294
>gb|BM371015.2|BM371015 EBro04_SQ003_D16_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_D16 5', mRNA sequence
Length = 366
Score = 44.1 bits (22), Expect = 0.012
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 239 gcaatggagcagtacgagaaggtggagaagatcggggagggc 280
||||||||||| ||||||| | | ||||||||||| ||||||
Sbjct: 98 gcaatggagcactacgagaggctcgagaagatcggcgagggc 139
>gb|BI956523.1|BI956523 HVSMEn0003O17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0003O17f, mRNA sequence
Length = 453
Score = 42.1 bits (21), Expect = 0.047
Identities = 78/97 (80%)
Strand = Plus / Plus
Query: 253 cgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgctggacaa 312
||||||| | ||| ||||||| |||||||| |||||| |||||||| ||| ||| |
Sbjct: 174 cgagaagctcgagcagatcggcgagggcacctacgggcaggtgtacatggccaaggagac 233
Query: 313 ggccaccaacgagacgatcgcgctcaagaagatccgc 349
|| |||||||||| |||| |||||||||||||||
Sbjct: 234 ggagaccaacgagatcgtcgccctcaagaagatccgc 270
>gb|BF264315.2|BF264315 HV_CEa0009B14f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009B14f, mRNA sequence
Length = 831
Score = 42.1 bits (21), Expect = 0.047
Identities = 78/97 (80%)
Strand = Plus / Plus
Query: 253 cgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgctggacaa 312
||||||| | ||| ||||||| |||||||| |||||| |||||||| ||| ||| |
Sbjct: 186 cgagaagctcgagcagatcggcgagggcacctacgggcaggtgtacatggccaaggagac 245
Query: 313 ggccaccaacgagacgatcgcgctcaagaagatccgc 349
|| |||||||||| |||| |||||||||||||||
Sbjct: 246 ggagaccaacgagatcgtcgccctcaagaagatccgc 282
>gb|BF258979.3|BF258979 HVSMEf0017E08f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0017E08f, mRNA sequence
Length = 790
Score = 42.1 bits (21), Expect = 0.047
Identities = 78/97 (80%)
Strand = Plus / Plus
Query: 253 cgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgctggacaa 312
||||||| | ||| ||||||| |||||||| |||||| |||||||| ||| ||| |
Sbjct: 123 cgagaagctcgagcagatcggcgagggcacctacgggcaggtgtacatggccaaggagac 182
Query: 313 ggccaccaacgagacgatcgcgctcaagaagatccgc 349
|| |||||||||| |||| |||||||||||||||
Sbjct: 183 ggagaccaacgagatcgtcgccctcaagaagatccgc 219
>gb|CB882697.1|CB882697 HL02J13w HL Hordeum vulgare subsp. vulgare cDNA clone HL02J13
3-PRIME, mRNA sequence
Length = 648
Score = 42.1 bits (21), Expect = 0.047
Identities = 78/97 (80%)
Strand = Plus / Plus
Query: 253 cgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgctggacaa 312
||||||| | ||| ||||||| |||||||| |||||| |||||||| ||| ||| |
Sbjct: 160 cgagaagctcgagcagatcggcgagggcacctacgggcaggtgtacatggccaaggagac 219
Query: 313 ggccaccaacgagacgatcgcgctcaagaagatccgc 349
|| |||||||||| |||| |||||||||||||||
Sbjct: 220 ggagaccaacgagatcgtcgccctcaagaagatccgc 256
>gb|CB883630.1|CB883630 HQ02N03w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02N03
3-PRIME, mRNA sequence
Length = 596
Score = 40.1 bits (20), Expect = 0.19
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 330 tcgcgctcaagaagatccgcctcgagcaggaggacgagggcgtcccgtccaccgccatcc 389
|||||||||||||||||||| | || | ||| ||||||| |||| ||| |||||||
Sbjct: 225 tcgcgctcaagaagatccgcatggacaacgagcgcgagggcttccctatcacggccatcc 284
Query: 390 gcgagatc 397
||||||||
Sbjct: 285 gcgagatc 292
>gb|CK125574.1|CK125574 BES1824109b13 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B139 5-PRIME, mRNA sequence
Length = 584
Score = 40.1 bits (20), Expect = 0.19
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 330 tcgcgctcaagaagatccgcctcgagcaggaggacgagggcgtcccgtccaccgccatcc 389
|||||||||||||||||||| | || | ||| ||||||| |||| ||| |||||||
Sbjct: 258 tcgcgctcaagaagatccgcatggacaacgagcgcgagggcttccctatcacggccatcc 317
Query: 390 gcgagatc 397
||||||||
Sbjct: 318 gcgagatc 325
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 155,943
Number of Sequences: 312970
Number of extensions: 155943
Number of successful extensions: 41198
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 41116
Number of HSP's gapped (non-prelim): 77
length of query: 1354
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1335
effective length of database: 169,188,109
effective search space: 225866125515
effective search space used: 225866125515
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)