BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419137.2.4
(591 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ463438.1|BQ463438 HI05E11r HI Hordeum vulgare subsp. v... 262 1e-068
gb|BQ464747.1|BQ464747 HU01E09T HU Hordeum vulgare subsp. v... 262 1e-068
gb|BQ465180.1|BQ465180 HU02O01r HU Hordeum vulgare subsp. v... 262 1e-068
gb|BU984657.1|BU984657 HF04J15r HF Hordeum vulgare subsp. v... 262 1e-068
gb|BU989603.1|BU989603 HF22D02r HF Hordeum vulgare subsp. v... 262 1e-068
gb|BU990322.1|BU990322 HF24L02r HF Hordeum vulgare subsp. v... 262 1e-068
gb|CA004376.1|CA004376 HS17G12r HS Hordeum vulgare subsp. v... 262 1e-068
gb|CA004786.1|CA004786 HS18K24r HS Hordeum vulgare subsp. v... 262 1e-068
gb|CA009388.1|CA009388 HU13P20r HU Hordeum vulgare subsp. v... 262 1e-068
gb|BQ663198.1|BQ663198 HU01E09w HU Hordeum vulgare subsp. v... 260 5e-068
gb|CA004328.1|CA004328 HS17E06r HS Hordeum vulgare subsp. v... 258 2e-067
gb|CA008041.1|CA008041 HU09L19r HU Hordeum vulgare subsp. v... 258 2e-067
gb|BJ464281.1|BJ464281 BJ464281 K. Sato unpublished cDNA li... 254 3e-066
gb|BJ465037.1|BJ465037 BJ465037 K. Sato unpublished cDNA li... 254 3e-066
gb|BJ466728.1|BJ466728 BJ466728 K. Sato unpublished cDNA li... 254 3e-066
gb|BM369288.2|BM369288 EBem07_SQ003_C11_R embryo, 28 DPA, n... 254 3e-066
gb|BM369553.2|BM369553 EBem07_SQ003_P01_R embryo, 28 DPA, n... 254 3e-066
gb|BM098670.2|BM098670 EBem08_SQ003_L21_R embryo, 40 DPA, n... 254 3e-066
gb|BU994191.1|BU994191 HM06C01r HM Hordeum vulgare subsp. v... 254 3e-066
gb|BU994874.1|BU994874 HM08H11r HM Hordeum vulgare subsp. v... 254 3e-066
gb|CA004871.1|CA004871 HS18O20r HS Hordeum vulgare subsp. v... 254 3e-066
gb|CB880997.1|CB880997 HM08H11w HM Hordeum vulgare subsp. v... 254 3e-066
gb|BQ754412.1|BQ754412 EBca01_SQ003_O08_R carpel, pre-anthe... 238 2e-061
gb|CA018044.1|CA018044 HV07D21r HV Hordeum vulgare subsp. v... 216 6e-055
gb|CA005707.1|CA005707 HU08P16u HU Hordeum vulgare subsp. v... 214 2e-054
gb|BM098563.2|BM098563 EBem08_SQ003_G21_R embryo, 40 DPA, n... 196 6e-049
gb|CB880299.1|CB880299 HM06C01w HM Hordeum vulgare subsp. v... 196 6e-049
gb|BJ468105.1|BJ468105 BJ468105 K. Sato unpublished cDNA li... 172 8e-042
gb|CB882818.1|CB882818 HL02O21w HL Hordeum vulgare subsp. v... 163 8e-039
gb|CA007775.1|CA007775 HU08P16r HU Hordeum vulgare subsp. v... 133 7e-030
gb|BI950113.1|BI950113 HVSMEl0018L24f Hordeum vulgare spike... 129 1e-028
gb|BM096909.2|BM096909 EBma08_SQ001_P18_R maternal, 28 DPA,... 125 2e-027
gb|AJ461862.1|AJ461862 AJ461862 S00002 Hordeum vulgare subs... 109 1e-022
gb|CA022247.1|CA022247 HZ42J06r HZ Hordeum vulgare subsp. v... 109 1e-022
gb|BQ660749.1|BQ660749 HI05E11u HI Hordeum vulgare subsp. v... 105 2e-021
gb|BE420585.1|BE420585 HWM000.D10 ITEC HWM Barley Leaf Libr... 103 6e-021
gb|BE420985.1|BE420985 HWM004.F02 ITEC HWM Barley Leaf Libr... 103 6e-021
gb|BE421050.1|BE421050 HWM005.C07 ITEC HWM Barley Leaf Libr... 103 6e-021
gb|BE421717.1|BE421717 HWM013cE.04r ITEC HWM Barley Leaf Li... 103 6e-021
gb|BF625588.2|BF625588 HVSMEa0011K14f Hordeum vulgare seedl... 103 6e-021
gb|BF618765.2|BF618765 HVSMEc0007L17f Hordeum vulgare seedl... 103 6e-021
gb|BI959614.1|BI959614 HVSMEn0020G21f Hordeum vulgare rachi... 103 6e-021
gb|BG343557.2|BG343557 HVSMEg0006G04f Hordeum vulgare pre-a... 103 6e-021
gb|BM098165.1|BM098165 EBpi03_SQ002_L17_R pistil, 4 DPA, no... 103 6e-021
gb|AV909403.1|AV909403 AV909403 K. Sato unpublished cDNA li... 103 6e-021
gb|AV911298.1|AV911298 AV911298 K. Sato unpublished cDNA li... 103 6e-021
gb|BQ469222.1|BQ469222 HM03M06r HM Hordeum vulgare subsp. v... 103 6e-021
gb|BM375844.2|BM375844 EBem06_SQ004_J05_R embryo, 21 DPA, n... 103 6e-021
gb|BI780941.2|BI780941 EBma05_SQ001_J10_R maternal, 12 DPA,... 103 6e-021
gb|BM372188.2|BM372188 EBro03_SQ004_E09_R root, 3 week, wat... 103 6e-021
gb|BI777995.2|BI777995 EBro07_SQ001_M02_R root, 3 week, red... 103 6e-021
gb|BU994411.1|BU994411 HM06P18r HM Hordeum vulgare subsp. v... 103 6e-021
gb|BU994797.1|BU994797 HM08D16r HM Hordeum vulgare subsp. v... 103 6e-021
gb|BU995059.1|BU995059 HM09B03r HM Hordeum vulgare subsp. v... 103 6e-021
gb|CB880582.1|CB880582 HM06P18w HM Hordeum vulgare subsp. v... 103 6e-021
gb|CB880919.1|CB880919 HM08D16w HM Hordeum vulgare subsp. v... 103 6e-021
gb|CB881200.1|CB881200 HM09B03w HM Hordeum vulgare subsp. v... 103 6e-021
gb|BI778326.2|BI778326 EBro07_SQ002_O06_R root, 3 week, red... 100 1e-019
gb|BM100530.2|BM100530 EBma01_SQ005_H21_R maternal, 4 DPA, ... 98 4e-019
gb|BF623191.2|BF623191 HVSMEa0015C05f Hordeum vulgare seedl... 96 2e-018
gb|BU983139.1|BU983139 HA28K22r HA Hordeum vulgare subsp. v... 94 6e-018
gb|BF626724.1|BF626724 HVSMEb0001C21f Hordeum vulgare seedl... 88 4e-016
gb|AJ461249.1|AJ461249 AJ461249 S00002 Hordeum vulgare subs... 86 2e-015
gb|AL505633.1|AL505633 AL505633 Hordeum vulgare Barke roots... 80 9e-014
gb|BF255418.3|BF255418 HVSMEf0006M22f Hordeum vulgare seedl... 80 9e-014
gb|BM376778.2|BM376778 EBem05_SQ003_D10_R embryo, 14 DPA, n... 80 9e-014
gb|AL505645.1|AL505645 AL505645 Hordeum vulgare Barke roots... 78 4e-013
gb|BQ763299.1|BQ763299 EBro02_SQ007_K19_R root, 3 week, hyd... 78 4e-013
gb|BF619995.2|BF619995 HVSMEc0009P08f Hordeum vulgare seedl... 72 2e-011
gb|BM371465.2|BM371465 EBma08_SQ002_N08_R maternal, 28 DPA,... 72 2e-011
gb|BM097099.2|BM097099 EBpi07_SQ002_G09_R pistil, 12 DPA, n... 72 2e-011
gb|CB859349.1|CB859349 HI10D03w HI Hordeum vulgare subsp. v... 72 2e-011
gb|AL503334.1|AL503334 AL503334 Hordeum vulgare Barke roots... 70 9e-011
gb|BF257331.2|BF257331 HVSMEf0012J06f Hordeum vulgare seedl... 70 9e-011
gb|BF257923.3|BF257923 HVSMEf0014E01f Hordeum vulgare seedl... 70 9e-011
gb|BF260272.3|BF260272 HVSMEf0021I24f Hordeum vulgare seedl... 70 9e-011
gb|AV912950.1|AV912950 AV912950 K. Sato unpublished cDNA li... 70 9e-011
gb|AV917706.1|AV917706 AV917706 K. Sato unpublished cDNA li... 70 9e-011
gb|AV924386.1|AV924386 AV924386 K. Sato unpublished cDNA li... 70 9e-011
gb|AV925407.1|AV925407 AV925407 K. Sato unpublished cDNA li... 70 9e-011
gb|AV929478.1|AV929478 AV929478 K. Sato unpublished cDNA li... 70 9e-011
gb|AV930561.1|AV930561 AV930561 K. Sato unpublished cDNA li... 70 9e-011
gb|BM816117.1|BM816117 HC113G07_SK.ab1 HC Hordeum vulgare s... 70 9e-011
gb|AJ434083.1|AJ434083 AJ434083 S00002 Hordeum vulgare subs... 70 9e-011
gb|AJ434576.1|AJ434576 AJ434576 S00002 Hordeum vulgare subs... 70 9e-011
gb|AJ436422.1|AJ436422 AJ436422 S00002 Hordeum vulgare subs... 70 9e-011
gb|AJ461779.1|AJ461779 AJ461779 S00002 Hordeum vulgare subs... 70 9e-011
gb|AJ461922.1|AJ461922 AJ461922 S00002 Hordeum vulgare subs... 70 9e-011
gb|BJ452042.1|BJ452042 BJ452042 K. Sato unpublished cDNA li... 70 9e-011
gb|BJ459599.1|BJ459599 BJ459599 K. Sato unpublished cDNA li... 70 9e-011
gb|BQ467852.1|BQ467852 HR01C06r HR Hordeum vulgare subsp. v... 70 9e-011
gb|BQ467952.1|BQ467952 HR01H05r HR Hordeum vulgare subsp. v... 70 9e-011
gb|BQ467975.1|BQ467975 HR01I11r HR Hordeum vulgare subsp. v... 70 9e-011
gb|BQ468082.1|BQ468082 HR01O09r HR Hordeum vulgare subsp. v... 70 9e-011
gb|BQ468098.1|BQ468098 HR01P02r HR Hordeum vulgare subsp. v... 70 9e-011
gb|BM370705.2|BM370705 EBro04_SQ001_O14_R root, 3 week, sal... 70 9e-011
gb|BI777804.2|BI777804 EBro08_SQ002_C04_R root, 3 week, dro... 70 9e-011
gb|BI777848.2|BI777848 EBro08_SQ002_E20_R root, 3 week, dro... 70 9e-011
gb|BQ760636.1|BQ760636 EBro03_SQ003_A21_R root, 3 week, wat... 70 9e-011
gb|BQ763329.1|BQ763329 EBro02_SQ007_P23_R root, 3 week, hyd... 70 9e-011
gb|BQ765319.1|BQ765319 EBro03_SQ006_H19_R root, 3 week, wat... 70 9e-011
gb|BQ766691.1|BQ766691 EBro08_SQ006_I21_R root, 3 week, dro... 70 9e-011
gb|CA016183.1|CA016183 HV09O15u HV Hordeum vulgare subsp. v... 70 9e-011
gb|CA018876.1|CA018876 HV09O15r HV Hordeum vulgare subsp. v... 70 9e-011
gb|AL508349.1|AL508349 AL508349 Hordeum vulgare Barke devel... 68 4e-010
gb|AL508694.1|AL508694 AL508694 Hordeum vulgare Barke devel... 68 4e-010
gb|AL509508.1|AL509508 AL509508 Hordeum vulgare Barke devel... 68 4e-010
gb|AJ462228.1|AJ462228 AJ462228 S00002 Hordeum vulgare subs... 68 4e-010
gb|BQ463291.1|BQ463291 HI04K24r HI Hordeum vulgare subsp. v... 68 4e-010
gb|BQ464379.1|BQ464379 HF02B20r HF Hordeum vulgare subsp. v... 68 4e-010
gb|BQ656814.1|BQ656814 HA02A21u HA Hordeum vulgare subsp. v... 68 4e-010
gb|BI776270.2|BI776270 EBem04_SQ001_F02_R embryo, 12 DPA, n... 68 4e-010
gb|BI779665.2|BI779665 EBem05_SQ001_A01_R embryo, 14 DPA, n... 68 4e-010
gb|BI779670.2|BI779670 EBem05_SQ001_A06_R embryo, 14 DPA, n... 68 4e-010
gb|BM098200.2|BM098200 EBpi03_SQ002_N09_R pistil, 4 DPA, no... 68 4e-010
gb|BI777839.2|BI777839 EBro08_SQ002_E06_R root, 3 week, dro... 68 4e-010
gb|BU984370.1|BU984370 HF03L21r HF Hordeum vulgare subsp. v... 68 4e-010
gb|BU985271.1|BU985271 HF06K04r HF Hordeum vulgare subsp. v... 68 4e-010
gb|BU987172.1|BU987172 HF14A02r HF Hordeum vulgare subsp. v... 68 4e-010
gb|BU987976.1|BU987976 HF16F02r HF Hordeum vulgare subsp. v... 68 4e-010
gb|BU988772.1|BU988772 HF18K17r HF Hordeum vulgare subsp. v... 68 4e-010
gb|CA022278.1|CA022278 HZ42K16r HZ Hordeum vulgare subsp. v... 68 4e-010
gb|CA025180.1|CA025180 HZ51G24r HZ Hordeum vulgare subsp. v... 68 4e-010
gb|CB858885.1|CB858885 HI08J20w HI Hordeum vulgare subsp. v... 68 4e-010
gb|CK123297.1|CK123297 BES1824103d11 BES1824 Hordeum vulgar... 68 4e-010
gb|BF253395.3|BF253395 HVSMEf0001E23f Hordeum vulgare seedl... 66 1e-009
gb|AL500738.1|AL500738 AL500738 Hordeum vulgare Barke roots... 64 6e-009
gb|AL502892.1|AL502892 AL502892 Hordeum vulgare Barke roots... 64 6e-009
gb|AL505285.1|AL505285 AL505285 Hordeum vulgare Barke roots... 64 6e-009
gb|BF619116.2|BF619116 HVSMEc0011C05f Hordeum vulgare seedl... 64 6e-009
gb|BF259925.2|BF259925 HVSMEf0020K05f Hordeum vulgare seedl... 62 2e-008
gb|BF256140.2|BF256140 HVSMEf0008N22f Hordeum vulgare seedl... 62 2e-008
gb|AV911446.1|AV911446 AV911446 K. Sato unpublished cDNA li... 62 2e-008
gb|AJ436541.1|AJ436541 AJ436541 S00002 Hordeum vulgare subs... 62 2e-008
gb|AJ463490.1|AJ463490 AJ463490 S00002 Hordeum vulgare subs... 62 2e-008
gb|AJ463491.1|AJ463491 AJ463491 S00002 Hordeum vulgare subs... 62 2e-008
gb|BQ467967.1|BQ467967 HR01H24r HR Hordeum vulgare subsp. v... 62 2e-008
gb|BQ662087.1|BQ662087 HR01H24u HR Hordeum vulgare subsp. v... 62 2e-008
gb|BM370011.2|BM370011 EBro08_SQ002_K19_R root, 3 week, dro... 62 2e-008
gb|BQ766496.1|BQ766496 EBro08_SQ006_B12_R root, 3 week, dro... 62 2e-008
gb|CA020259.1|CA020259 HV14M16r HV Hordeum vulgare subsp. v... 62 2e-008
gb|AL511572.1|AL511572 AL511572 Hordeum vulgare Barke devel... 60 9e-008
gb|BM375240.2|BM375240 EBem06_SQ002_M19_R embryo, 21 DPA, n... 60 9e-008
gb|BM443385.2|BM443385 EBro02_SQ003_N22_R root, 3 week, hyd... 60 9e-008
gb|CB859948.1|CB859948 HI12B20w HI Hordeum vulgare subsp. v... 60 9e-008
gb|AL502368.1|AL502368 AL502368 Hordeum vulgare Barke roots... 58 3e-007
gb|AL504058.1|AL504058 AL504058 Hordeum vulgare Barke roots... 58 3e-007
gb|BM373827.2|BM373827 EBma03_SQ002_N07_R maternal, 8 DPA, ... 58 3e-007
gb|BQ763927.1|BQ763927 EBro03_SQ005_E22 _R root, 3 week, wa... 58 3e-007
gb|BQ764044.1|BQ764044 EBro03_SQ006_J02_R root, 3 week, wat... 58 3e-007
gb|BQ768434.1|BQ768434 EBro08_SQ011_O17_R root, 3 week, dro... 58 3e-007
gb|AL505088.1|AL505088 AL505088 Hordeum vulgare Barke roots... 56 1e-006
gb|BF254940.3|BF254940 HVSMEf0005H16f Hordeum vulgare seedl... 56 1e-006
gb|BF259425.3|BF259425 HVSMEf0019B06f Hordeum vulgare seedl... 56 1e-006
gb|BQ766010.1|BQ766010 EBro03_SQ008_E20_R root, 3 week, wat... 56 1e-006
gb|BF256200.3|BF256200 HVSMEf0009B11f Hordeum vulgare seedl... 54 5e-006
gb|BG418614.2|BG418614 HVSMEk0023I02f Hordeum vulgare testa... 54 5e-006
gb|AJ463257.1|AJ463257 AJ463257 S00002 Hordeum vulgare subs... 54 5e-006
gb|AJ463258.1|AJ463258 AJ463258 S00002 Hordeum vulgare subs... 54 5e-006
gb|BQ661490.1|BQ661490 HM03M06u HM Hordeum vulgare subsp. v... 54 5e-006
gb|CA008281.1|CA008281 HU10H13r HU Hordeum vulgare subsp. v... 54 5e-006
gb|BF256432.2|BF256432 HVSMEf0009J20f Hordeum vulgare seedl... 50 8e-005
gb|AL509608.1|AL509608 AL509608 Hordeum vulgare Barke devel... 48 3e-004
gb|BF253600.3|BF253600 HVSMEf0001J16f Hordeum vulgare seedl... 48 3e-004
gb|AJ436602.1|AJ436602 AJ436602 S00002 Hordeum vulgare subs... 48 3e-004
gb|BQ662077.1|BQ662077 HR01H05u HR Hordeum vulgare subsp. v... 48 3e-004
gb|BI779275.2|BI779275 EBro01_SQ003_I12_R root, 3 week, hyd... 48 3e-004
gb|AL504225.1|AL504225 AL504225 Hordeum vulgare Barke roots... 44 0.005
gb|BF256355.2|BF256355 HVSMEf0009F13f Hordeum vulgare seedl... 44 0.005
gb|BF255563.3|BF255563 HVSMEf0007D06f Hordeum vulgare seedl... 44 0.005
gb|BM445070.2|BM445070 EBem09_SQ007_F11_R embryo, 1 Day ger... 44 0.005
gb|BE420572.1|BE420572 HWM000.C09 ITEC HWM Barley Leaf Libr... 42 0.020
gb|BE421032.1|BE421032 HWM005.B01 ITEC HWM Barley Leaf Libr... 42 0.020
gb|BF627475.2|BF627475 HVSMEb0004P08f Hordeum vulgare seedl... 42 0.020
gb|BI952837.1|BI952837 HVSMEm0007O18f Hordeum vulgare green... 42 0.020
gb|BF264237.3|BF264237 HV_CEa0008O05f Hordeum vulgare seedl... 42 0.020
gb|BF265428.3|BF265428 HV_CEa0012D19f Hordeum vulgare seedl... 42 0.020
gb|BE196524.1|BE196524 HVSMEh0092I16f Hordeum vulgare 5-45 ... 40 0.080
gb|BI950729.1|BI950729 HVSMEl0023A02f Hordeum vulgare spike... 40 0.080
gb|BJ448342.1|BJ448342 BJ448342 K. Sato unpublished cDNA li... 40 0.080
gb|BJ456060.1|BJ456060 BJ456060 K. Sato unpublished cDNA li... 40 0.080
gb|BM371410.2|BM371410 EBma08_SQ002_K01_R maternal, 28 DPA,... 40 0.080
gb|CA024654.1|CA024654 HZ49O19r HZ Hordeum vulgare subsp. v... 40 0.080
gb|CA027544.1|CA027544 HZ59E07r HZ Hordeum vulgare subsp. v... 40 0.080
gb|CB858312.1|CB858312 HI06J01w HI Hordeum vulgare subsp. v... 40 0.080
gb|CB858998.1|CB858998 HI08P12w HI Hordeum vulgare subsp. v... 40 0.080
gb|CB859638.1|CB859638 HI11B10w HI Hordeum vulgare subsp. v... 40 0.080
gb|CB878951.1|CB878951 HP10G17T HP Hordeum vulgare subsp. v... 40 0.080
gb|CK123693.1|CK123693 BES1824105b19 BES1824 Hordeum vulgar... 40 0.080
gb|AL501398.1|AL501398 AL501398 Hordeum vulgare Barke roots... 38 0.32
gb|BF267554.3|BF267554 HV_CEa0018E06f Hordeum vulgare seedl... 38 0.32
gb|BM373778.2|BM373778 EBma03_SQ002_K15_R maternal, 8 DPA, ... 38 0.32
gb|CA018755.1|CA018755 HV09J01r HV Hordeum vulgare subsp. v... 38 0.32
>gb|BQ463438.1|BQ463438 HI05E11r HI Hordeum vulgare subsp. vulgare cDNA clone HI05E11
5-PRIME, mRNA sequence
Length = 642
Score = 262 bits (132), Expect = 1e-068
Identities = 213/240 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 273 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 214
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | |||||||||||||||||
Sbjct: 213 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcagaggcacaccgc 154
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 153 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 94
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 93 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 34
>gb|BQ464747.1|BQ464747 HU01E09T HU Hordeum vulgare subsp. vulgare cDNA clone HU01E09
5-PRIME, mRNA sequence
Length = 592
Score = 262 bits (132), Expect = 1e-068
Identities = 213/240 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 272 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 213
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | |||||||||||||||||
Sbjct: 212 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcagaggcacaccgc 153
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 152 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 93
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 92 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 33
>gb|BQ465180.1|BQ465180 HU02O01r HU Hordeum vulgare subsp. vulgare cDNA clone HU02O01
5-PRIME, mRNA sequence
Length = 629
Score = 262 bits (132), Expect = 1e-068
Identities = 213/240 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 316 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 257
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | |||||||||||||||||
Sbjct: 256 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcagaggcacaccgc 197
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 196 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 137
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 136 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 77
>gb|BU984657.1|BU984657 HF04J15r HF Hordeum vulgare subsp. vulgare cDNA clone HF04J15
5-PRIME, mRNA sequence
Length = 626
Score = 262 bits (132), Expect = 1e-068
Identities = 213/240 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 269 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 210
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | |||||||||||||||||
Sbjct: 209 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcagaggcacaccgc 150
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 149 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 90
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 89 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 30
>gb|BU989603.1|BU989603 HF22D02r HF Hordeum vulgare subsp. vulgare cDNA clone HF22D02
5-PRIME, mRNA sequence
Length = 578
Score = 262 bits (132), Expect = 1e-068
Identities = 213/240 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 264 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 205
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | |||||||||||||||||
Sbjct: 204 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcagaggcacaccgc 145
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 144 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 85
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 84 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 25
>gb|BU990322.1|BU990322 HF24L02r HF Hordeum vulgare subsp. vulgare cDNA clone HF24L02
5-PRIME, mRNA sequence
Length = 577
Score = 262 bits (132), Expect = 1e-068
Identities = 213/240 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 264 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 205
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | |||||||||||||||||
Sbjct: 204 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcagaggcacaccgc 145
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 144 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 85
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 84 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 25
>gb|CA004376.1|CA004376 HS17G12r HS Hordeum vulgare subsp. vulgare cDNA clone HS17G12
5-PRIME, mRNA sequence
Length = 455
Score = 262 bits (132), Expect = 1e-068
Identities = 213/240 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 308 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 249
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | |||||||||||||||||
Sbjct: 248 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcagaggcacaccgc 189
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 188 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 129
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 128 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 69
>gb|CA004786.1|CA004786 HS18K24r HS Hordeum vulgare subsp. vulgare cDNA clone HS18K24
5-PRIME, mRNA sequence
Length = 408
Score = 262 bits (132), Expect = 1e-068
Identities = 213/240 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 270 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 211
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | |||||||||||||||||
Sbjct: 210 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcagaggcacaccgc 151
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 150 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 91
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 90 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 31
>gb|CA009388.1|CA009388 HU13P20r HU Hordeum vulgare subsp. vulgare cDNA clone HU13P20
5-PRIME, mRNA sequence
Length = 597
Score = 262 bits (132), Expect = 1e-068
Identities = 213/240 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 393 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 334
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | |||||||||||||||||
Sbjct: 333 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcagaggcacaccgc 274
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 273 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 214
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 213 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 154
>gb|BQ663198.1|BQ663198 HU01E09w HU Hordeum vulgare subsp. vulgare cDNA clone HU01E09
3-PRIME, mRNA sequence
Length = 554
Score = 260 bits (131), Expect = 5e-068
Identities = 212/239 (88%)
Strand = Plus / Plus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 316 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 375
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | |||||||||||||||||
Sbjct: 376 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcagaggcacaccgc 435
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 436 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 495
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgt 388
||| | ||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 496 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgt 554
>gb|CA004328.1|CA004328 HS17E06r HS Hordeum vulgare subsp. vulgare cDNA clone HS17E06
5-PRIME, mRNA sequence
Length = 266
Score = 258 bits (130), Expect = 2e-067
Identities = 193/214 (90%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct: 264 tgccgcagtagttgacgaggaggctgaggtcgatgggcacgttgaggttgatgccaagga 205
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctgga 295
||||||| |||| | ||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 204 tgttggccttgagcgccgtgcagaggcacaccgccgcctccaggtcggcgagcccctgga 145
Query: 296 tcagcgtgcagcacggcgtcctgggcggcgtccccagggtcgcgttgatcagcccgttca 355
||||||||||||||||| || | |||||||| ||||| | ||||||||||||||| |
Sbjct: 144 tcagcgtgcagcacggcttcttcggcggcgtgcccagctgcaggttgatcagcccgttga 85
Query: 356 gcaagttggcgcacacgcccagcttcagcgcgtc 389
||| ||||||||||||||||||||||||||||||
Sbjct: 84 gcacgttggcgcacacgcccagcttcagcgcgtc 51
>gb|CA008041.1|CA008041 HU09L19r HU Hordeum vulgare subsp. vulgare cDNA clone HU09L19
5-PRIME, mRNA sequence
Length = 346
Score = 258 bits (130), Expect = 2e-067
Identities = 193/214 (90%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct: 311 tgccgcagtagttgacgaggaggctgaggtcgatgggcacgttgaggttgatgccaagga 252
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctgga 295
||||||| |||| | ||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 251 tgttggccttgagcgccgtgcagaggcacaccgccgcctccaggtcggcgagcccctgga 192
Query: 296 tcagcgtgcagcacggcgtcctgggcggcgtccccagggtcgcgttgatcagcccgttca 355
||||||||||||||||| || | |||||||| ||||| | ||||||||||||||| |
Sbjct: 191 tcagcgtgcagcacggcttcttcggcggcgtgcccagctgcaggttgatcagcccgttga 132
Query: 356 gcaagttggcgcacacgcccagcttcagcgcgtc 389
||| ||||||||||||||||||||||||||||||
Sbjct: 131 gcacgttggcgcacacgcccagcttcagcgcgtc 98
>gb|BJ464281.1|BJ464281 BJ464281 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33k08 5', mRNA sequence
Length = 604
Score = 254 bits (128), Expect = 3e-066
Identities = 212/240 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 296 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 237
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | ||||| |||||||||||
Sbjct: 236 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcacaggcacaccgc 177
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 176 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 117
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 116 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 57
>gb|BJ465037.1|BJ465037 BJ465037 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c02 5', mRNA sequence
Length = 501
Score = 254 bits (128), Expect = 3e-066
Identities = 212/240 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 291 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 232
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | ||||| |||||||||||
Sbjct: 231 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcacaggcacaccgc 172
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 171 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 112
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 111 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 52
>gb|BJ466728.1|BJ466728 BJ466728 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33k08 3', mRNA sequence
Length = 568
Score = 254 bits (128), Expect = 3e-066
Identities = 212/240 (88%)
Strand = Plus / Plus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 284 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 343
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | ||||| |||||||||||
Sbjct: 344 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcacaggcacaccgc 403
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 404 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 463
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 464 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 523
>gb|BM369288.2|BM369288 EBem07_SQ003_C11_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_C11 5', mRNA sequence
Length = 578
Score = 254 bits (128), Expect = 3e-066
Identities = 212/240 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 262 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 203
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | ||||| |||||||||||
Sbjct: 202 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcacaggcacaccgc 143
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 142 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 83
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 82 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 23
>gb|BM369553.2|BM369553 EBem07_SQ003_P01_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_P01 5', mRNA sequence
Length = 551
Score = 254 bits (128), Expect = 3e-066
Identities = 212/240 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 371 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 312
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | ||||| |||||||||||
Sbjct: 311 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcacaggcacaccgc 252
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 251 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 192
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 191 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 132
>gb|BM098670.2|BM098670 EBem08_SQ003_L21_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_L21 5', mRNA sequence
Length = 518
Score = 254 bits (128), Expect = 3e-066
Identities = 212/240 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 263 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 204
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | ||||| |||||||||||
Sbjct: 203 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcacaggcacaccgc 144
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 143 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 84
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 83 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 24
>gb|BU994191.1|BU994191 HM06C01r HM Hordeum vulgare subsp. vulgare cDNA clone HM06C01
5-PRIME, mRNA sequence
Length = 551
Score = 254 bits (128), Expect = 3e-066
Identities = 212/240 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 315 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 256
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||| | |||| ||||||| |||| | |||||||||||||||||
Sbjct: 255 gggcacgttgaggttgatgtcaaggatgttggccttgagcgccgtgcagaggcacaccgc 196
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 195 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 136
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 135 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 76
>gb|BU994874.1|BU994874 HM08H11r HM Hordeum vulgare subsp. vulgare cDNA clone HM08H11
5-PRIME, mRNA sequence
Length = 654
Score = 254 bits (128), Expect = 3e-066
Identities = 212/240 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 315 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 256
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||| | |||| ||||||| |||| | |||||||||||||||||
Sbjct: 255 gggcacgttgaggttgatgtcaaggatgttggccttgagcgccgtgcagaggcacaccgc 196
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 195 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 136
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 135 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 76
>gb|CA004871.1|CA004871 HS18O20r HS Hordeum vulgare subsp. vulgare cDNA clone HS18O20
5-PRIME, mRNA sequence
Length = 468
Score = 254 bits (128), Expect = 3e-066
Identities = 212/240 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 323 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 264
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | |||||||||||||||||
Sbjct: 263 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcagaggcacaccgc 204
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 203 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 144
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| |||||||||||| |||||||||||||||||
Sbjct: 143 cagctgcaggttgatcagcccgttgagcacgttggcgcacacacccagcttcagcgcgtc 84
>gb|CB880997.1|CB880997 HM08H11w HM Hordeum vulgare subsp. vulgare cDNA clone HM08H11
3-PRIME, mRNA sequence
Length = 620
Score = 254 bits (128), Expect = 3e-066
Identities = 212/240 (88%)
Strand = Plus / Plus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 374 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 433
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||| | |||| ||||||| |||| | |||||||||||||||||
Sbjct: 434 gggcacgttgaggttgatgtcaaggatgttggccttgagcgccgtgcagaggcacaccgc 493
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 494 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 553
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 554 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 613
>gb|BQ754412.1|BQ754412 EBca01_SQ003_O08_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ003_O08 5', mRNA sequence
Length = 393
Score = 238 bits (120), Expect = 2e-061
Identities = 211/240 (87%), Gaps = 1/240 (0%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 361 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 302
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | ||||| |||||||||||
Sbjct: 301 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcacaggcacaccgc 242
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|| ||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 241 cg-ctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 183
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 182 cagctgcaggttgatcagcccgttgagcacgttggcgcacacgcccagcttcagcgcgtc 123
>gb|CA018044.1|CA018044 HV07D21r HV Hordeum vulgare subsp. vulgare cDNA clone HV07D21
5-PRIME, mRNA sequence
Length = 440
Score = 216 bits (109), Expect = 6e-055
Identities = 186/214 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
|||||||||||||||||||||||||||||| |||||||| |||||||||| || ||||
Sbjct: 282 tgccgcagtagttgacgaggaggctgaggtcgatgggcacgttgaggttgnnnccaagga 223
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctgga 295
||||||| |||| | ||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 222 tgttggccttgagcgccgtgcagaggcacaccgccgcctccaggtcggcgagcccctgga 163
Query: 296 tcagcgtgcagcacggcgtcctgggcggcgtccccagggtcgcgttgatcagcccgttca 355
| |||||||||||||| || | |||||||| ||||| | ||||||||||||||| |
Sbjct: 162 tnngcgtgcagcacggcttcttcggcggcgtgcccagctgcaggttgatcagcccgttga 103
Query: 356 gcaagttggcgcacacgcccagcttcagcgcgtc 389
||| ||||||||||||||||||||| |||||||
Sbjct: 102 gcacgttggcgcacacgcccagcttnngcgcgtc 69
>gb|CA005707.1|CA005707 HU08P16u HU Hordeum vulgare subsp. vulgare cDNA clone HU08P16
3-PRIME, mRNA sequence
Length = 535
Score = 214 bits (108), Expect = 2e-054
Identities = 189/216 (87%)
Strand = Plus / Plus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 320 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 379
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | |||||||||||||||||
Sbjct: 380 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcagaggcacaccgc 439
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 440 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 499
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggc 365
||| | ||||||||||||||| |||| ||||||
Sbjct: 500 cagctgcaggttgatcagcccgttgagcacgttggc 535
>gb|BM098563.2|BM098563 EBem08_SQ003_G21_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_G21 5', mRNA sequence
Length = 496
Score = 196 bits (99), Expect = 6e-049
Identities = 162/183 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 193 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 134
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | ||||| |||||||||||
Sbjct: 133 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcacaggcacaccgc 74
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 73 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 14
Query: 330 cag 332
|||
Sbjct: 13 cag 11
>gb|CB880299.1|CB880299 HM06C01w HM Hordeum vulgare subsp. vulgare cDNA clone HM06C01
3-PRIME, mRNA sequence
Length = 570
Score = 196 bits (99), Expect = 6e-049
Identities = 162/183 (88%)
Strand = Plus / Plus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 375 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 434
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||| | |||| ||||||| |||| | |||||||||||||||||
Sbjct: 435 gggcacgttgaggttgatgtcaaggatgttggccttgagcgccgtgcagaggcacaccgc 494
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
|||||||||||| || ||||||||||||||||||||||||||| || | |||||||| ||
Sbjct: 495 cgcctccaggtcggcgagcccctggatcagcgtgcagcacggcttcttcggcggcgtgcc 554
Query: 330 cag 332
|||
Sbjct: 555 cag 557
>gb|BJ468105.1|BJ468105 BJ468105 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c02 3', mRNA sequence
Length = 597
Score = 172 bits (87), Expect = 8e-042
Identities = 143/162 (88%)
Strand = Plus / Plus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 436 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 495
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | ||||| ||||||||||
Sbjct: 496 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcacaggcacaccgn 555
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacgg 311
||||| |||||| || ||||||||||||||||||||||||||
Sbjct: 556 cgccttcaggtcggcgagcccctggatcagcgtgcagcacgg 597
>gb|CB882818.1|CB882818 HL02O21w HL Hordeum vulgare subsp. vulgare cDNA clone HL02O21
3-PRIME, mRNA sequence
Length = 575
Score = 163 bits (82), Expect = 8e-039
Identities = 123/137 (89%)
Strand = Plus / Minus
Query: 253 gtgcagaggcacaccgccgcctccaggtccgccagcccctggatcagcgtgcagcacggc 312
|||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct: 568 gtgcagaggcacaccgccgcctncaggtcggcgagcccctggatcagcgtgcagcacggc 509
Query: 313 gtcctgggcggcgtccccagggtcgcgttgatcagcccgttcagcaagttggcgcacacg 372
|| | |||||||| ||||| | ||||||||||||||| |||| |||||||||||||
Sbjct: 508 ttcttcggcggcgtgcccagctgcaggttgatcagcccgttgagcacgttggcgcacacg 449
Query: 373 cccagcttcagcgcgtc 389
|||||||||||||||||
Sbjct: 448 cccagcttcagcgcgtc 432
>gb|CA007775.1|CA007775 HU08P16r HU Hordeum vulgare subsp. vulgare cDNA clone HU08P16
5-PRIME, mRNA sequence
Length = 175
Score = 133 bits (67), Expect = 7e-030
Identities = 109/123 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 123 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 64
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| ||||||||||||||| |||| ||||||| |||| | |||||||||||||||||
Sbjct: 63 gggcacgttgaggttgatgccaaggatgttggccttgagcgccgtgcagaggcacaccgc 4
Query: 270 cgc 272
|||
Sbjct: 3 cgc 1
>gb|BI950113.1|BI950113 HVSMEl0018L24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0018L24f, mRNA sequence
Length = 887
Score = 129 bits (65), Expect = 1e-028
Identities = 194/237 (81%)
Strand = Plus / Plus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| || |||||| ||||||||||| ||||| || |||||||||| |||
Sbjct: 417 gcactggaagccggaggggacgttcctgccgcagttgttgaggacgaggctgagggcgat 476
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| | ||||||||||||||| | |||| | || ||||| ||||||| |||
Sbjct: 477 gggcaagcggaggttgatgcccagaaggttgaggttcagcgtcgtgcacaggcacagcgc 536
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||
Sbjct: 537 cgcctccaggtccgccagcccctggatcagcgtgcagcacggctgcaccggcgggctccc 596
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgc 386
||| ||| ||| | ||||||| |||| ||| |||||||| ||||||||||||||
Sbjct: 597 cagagtcaggttcagcagcccgccgagcacgttcgcgcacacccccagcttcagcgc 653
>gb|BM096909.2|BM096909 EBma08_SQ001_P18_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ001_P18 5', mRNA sequence
Length = 692
Score = 125 bits (63), Expect = 2e-027
Identities = 138/163 (84%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| || |||||| ||||||||||| ||||| || |||||||||| |||
Sbjct: 532 gcactggaagccggaggggacgttcctgccgcagttgttgaggacgaggctgagggcgat 473
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||||| | ||||||||||||||| | |||| | || ||||| ||||||| |||
Sbjct: 472 gggcaagcggaggttgatgcccagaaggttgaggttcagcgtcgtgcacaggcacagcgc 413
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggc 312
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cgcctccaggtccgccagcccctggatcagcgtgcagcacggc 370
>gb|AJ461862.1|AJ461862 AJ461862 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200032D03F1, mRNA sequence
Length = 180
Score = 109 bits (55), Expect = 1e-022
Identities = 88/99 (88%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| | |||||| | |||||||||||||||||||||||||||||| |||
Sbjct: 111 gcactggaagccggcggggacgttcttgccgcagtagttgacgaggaggctgaggtcgat 52
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgag 248
||||| ||||||||||||||| |||| ||||||| ||||
Sbjct: 51 gggcacgttgaggttgatgccaaggatgttggccttgag 13
>gb|CA022247.1|CA022247 HZ42J06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42J06
5-PRIME, mRNA sequence
Length = 373
Score = 109 bits (55), Expect = 1e-022
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 253 gtgcagaggcacaccgccgcctccaggtccgccagcccctggatcagcgtgcagcacggc 312
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gtgcacaggcacagcgccgcctccaggtccgccagcccctggatcagcgtgcagcacggc 255
Query: 313 gtcctgggcggcgtccccagggtcgcgttgatcagcccgttcagcaagttggcgcacacg 372
| ||||| ||||||| ||| ||| | ||||||| |||| ||| ||||||||
Sbjct: 254 tgcaccggcgggctccccagagtcaggttcagcagcccgccgagcacgttcgcgcacacc 195
Query: 373 cccagcttcagcgcgtcca 391
|||||||||||||| ||||
Sbjct: 194 cccagcttcagcgcatcca 176
>gb|BQ660749.1|BQ660749 HI05E11u HI Hordeum vulgare subsp. vulgare cDNA clone HI05E11
3-PRIME, mRNA sequence
Length = 553
Score = 105 bits (53), Expect = 2e-021
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct: 474 tgccgcagtagttgacgaggaggctgaggtcgatgggcacgttgaggttgatgccaagga 533
Query: 236 cgttggccctgag 248
||||||| ||||
Sbjct: 534 tgttggccttgag 546
>gb|BE420585.1|BE420585 HWM000.D10 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM000.D10, mRNA sequence
Length = 1027
Score = 103 bits (52), Expect = 6e-021
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| |||||||||||| |||| ||| | ||||||| |||||| ||||
Sbjct: 253 tgccgcagtagttgaggaggaggctgagcttgacggggatgttgaggacgatgccgagga 194
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccag 287
|||||||| |||| |||||||||||||||| || ||||| ||||| |||||
Sbjct: 193 cgttggccttgagcgcggtgcagaggcacacggcggcctcgaggtcggccag 142
>gb|BE420985.1|BE420985 HWM004.F02 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.F02, mRNA sequence
Length = 1172
Score = 103 bits (52), Expect = 6e-021
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| |||||||||||| |||| ||| | ||||||| |||||| ||||
Sbjct: 315 tgccgcagtagttgaggaggaggctgagcttgacggggatgttgaggacgatgccgagga 256
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccag 287
|||||||| |||| |||||||||||||||| || ||||| ||||| |||||
Sbjct: 255 cgttggccttgagcgcggtgcagaggcacacggcggcctcgaggtcggccag 204
>gb|BE421050.1|BE421050 HWM005.C07 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM005.C07, mRNA sequence
Length = 1151
Score = 103 bits (52), Expect = 6e-021
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| |||||||||||| |||| ||| | ||||||| |||||| ||||
Sbjct: 312 tgccgcagtagttgaggaggaggctgagcttgacggggatgttgaggacgatgccgagga 253
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccag 287
|||||||| |||| |||||||||||||||| || ||||| ||||| |||||
Sbjct: 252 cgttggccttgagcgcggtgcagaggcacacggcggcctcgaggtcggccag 201
>gb|BE421717.1|BE421717 HWM013cE.04r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM013cE.04, mRNA sequence
Length = 586
Score = 103 bits (52), Expect = 6e-021
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| |||||||||||| |||| ||| | ||||||| |||||| ||||
Sbjct: 180 tgccgcagtagttgaggaggaggctgagcttgacggggatgttgaggacgatgccgagga 121
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccag 287
|||||||| |||| |||||||||||||||| || ||||| ||||| |||||
Sbjct: 120 cgttggccttgagcgcggtgcagaggcacacggcggcctcgaggtcggccag 69
>gb|BF625588.2|BF625588 HVSMEa0011K14f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011K14f, mRNA sequence
Length = 637
Score = 103 bits (52), Expect = 6e-021
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| |||||||||||| |||| ||| | ||||||| |||||| ||||
Sbjct: 261 tgccgcagtagttgaggaggaggctgagcttgacggggatgttgaggacgatgccgagga 202
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccag 287
|||||||| |||| |||||||||||||||| || ||||| ||||| |||||
Sbjct: 201 cgttggccttgagcgcggtgcagaggcacacggcggcctcgaggtcggccag 150
>gb|BF618765.2|BF618765 HVSMEc0007L17f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0007L17f, mRNA sequence
Length = 554
Score = 103 bits (52), Expect = 6e-021
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| |||||||||||| |||| ||| | ||||||| |||||| ||||
Sbjct: 457 tgccgcagtagttgaggaggaggctgagcttgacggggatgttgaggacgatgccgagga 398
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccag 287
|||||||| |||| |||||||||||||||| || ||||| ||||| |||||
Sbjct: 397 cgttggccttgagcgcggtgcagaggcacacggcggcctcgaggtcggccag 346
>gb|BI959614.1|BI959614 HVSMEn0020G21f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020G21f, mRNA sequence
Length = 668
Score = 103 bits (52), Expect = 6e-021
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| |||||||||||| |||| ||| | ||||||| |||||| ||||
Sbjct: 461 tgccgcagtagttgaggaggaggctgagcttgacggggatgttgaggacgatgccgagga 402
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccag 287
|||||||| |||| |||||||||||||||| || ||||| ||||| |||||
Sbjct: 401 cgttggccttgagcgcggtgcagaggcacacggcggcctcgaggtcggccag 350
>gb|BG343557.2|BG343557 HVSMEg0006G04f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006G04f, mRNA sequence
Length = 947
Score = 103 bits (52), Expect = 6e-021
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| |||||||||||| |||| ||| | ||||||| |||||| ||||
Sbjct: 241 tgccgcagtagttgaggaggaggctgagcttgacggggatgttgaggacgatgccgagga 182
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccag 287
|||||||| |||| |||||||||||||||| || ||||| ||||| |||||
Sbjct: 181 cgttggccttgagcgcggtgcagaggcacacggcggcctcgaggtcggccag 130
>gb|BM098165.1|BM098165 EBpi03_SQ002_L17_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_L17 5', mRNA sequence
Length = 435
Score = 103 bits (52), Expect = 6e-021
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| |||||||||||| |||| ||| | ||||||| |||||| ||||
Sbjct: 197 tgccgcagtagttgaggaggaggctgagcttgacggggatgttgaggacgatgccgagga 138
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccag 287
|||||||| |||| |||||||||||||||| || ||||| ||||| |||||
Sbjct: 137 cgttggccttgagcgcggtgcagaggcacacggcggcctcgaggtcggccag 86
>gb|AV909403.1|AV909403 AV909403 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12l15 5', mRNA sequence
Length = 543
Score = 103 bits (52), Expect = 6e-021
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| |||||||||||| |||| ||| | ||||||| |||||| ||||
Sbjct: 204 tgccgcagtagttgaggaggaggctgagcttgacggggatgttgaggacgatgccgagga 145
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccag 287
|||||||| |||| |||||||||||||||| || ||||| ||||| |||||
Sbjct: 144 cgttggccttgagcgcggtgcagaggcacacggcggcctcgaggtcggccag 93
>gb|AV911298.1|AV911298 AV911298 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12l15 3', mRNA sequence
Length = 498
Score = 103 bits (52), Expect = 6e-021
Identities = 97/112 (86%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| |||||||||||| |||| ||| | ||||||| |||||| ||||
Sbjct: 300 tgccgcagtagttgaggaggaggctgagcttgacggggatgttgaggacgatgccgagga 359
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccag 287
|||||||| |||| |||||||||||||||| || ||||| ||||| |||||
Sbjct: 360 cgttggccttgagcgcggtgcagaggcacacggcggcctcgaggtcggccag 411
>gb|BQ469222.1|BQ469222 HM03M06r HM Hordeum vulgare subsp. vulgare cDNA clone HM03M06
5-PRIME, mRNA sequence
Length = 588
Score = 103 bits (52), Expect = 6e-021
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| |||||||||||| |||| ||| | ||||||| |||||| ||||
Sbjct: 467 tgccgcagtagttgaggaggaggctgagcttgacggggatgttgaggacgatgccgagga 408
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccag 287
|||||||| |||| |||||||||||||||| || ||||| ||||| |||||
Sbjct: 407 cgttggccttgagcgcggtgcagaggcacacggcggcctcgaggtcggccag 356
>gb|BM375844.2|BM375844 EBem06_SQ004_J05_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ004_J05 5', mRNA sequence
Length = 542
Score = 103 bits (52), Expect = 6e-021
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| |||||||||||| |||| ||| | ||||||| |||||| ||||
Sbjct: 457 tgccgcagtagttgaggaggaggctgagcttgacggggatgttgaggacgatgccgagga 398
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccag 287
|||||||| |||| |||||||||||||||| || ||||| ||||| |||||
Sbjct: 397 cgttggccttgagcgcggtgcagaggcacacggcggcctcgaggtcggccag 346
>gb|BI780941.2|BI780941 EBma05_SQ001_J10_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ001_J10 5', mRNA sequence
Length = 562
Score = 103 bits (52), Expect = 6e-021
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| |||||||||||| |||| ||| | ||||||| |||||| ||||
Sbjct: 459 tgccgcagtagttgaggaggaggctgagcttgacggggatgttgaggacgatgccgagga 400
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccag 287
|||||||| |||| |||||||||||||||| || ||||| ||||| |||||
Sbjct: 399 cgttggccttgagcgcggtgcagaggcacacggcggcctcgaggtcggccag 348
>gb|BM372188.2|BM372188 EBro03_SQ004_E09_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_E09 5', mRNA sequence
Length = 554
Score = 103 bits (52), Expect = 6e-021
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| |||||||||||| |||| ||| | ||||||| |||||| ||||
Sbjct: 457 tgccgcagtagttgaggaggaggctgagcttgacggggatgttgaggacgatgccgagga 398
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccag 287
|||||||| |||| |||||||||||||||| || ||||| ||||| |||||
Sbjct: 397 cgttggccttgagcgcggtgcagaggcacacggcggcctcgaggtcggccag 346
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 63,650
Number of Sequences: 312970
Number of extensions: 63650
Number of successful extensions: 20064
Number of sequences better than 0.5: 194
Number of HSP's better than 0.5 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19631
Number of HSP's gapped (non-prelim): 397
length of query: 591
length of database: 175,134,539
effective HSP length: 19
effective length of query: 572
effective length of database: 169,188,109
effective search space: 96775598348
effective search space used: 96775598348
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)