BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419137.2.1
(989 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ463438.1|BQ463438 HI05E11r HI Hordeum vulgare subsp. v... 246 1e-063
gb|BQ464747.1|BQ464747 HU01E09T HU Hordeum vulgare subsp. v... 246 1e-063
gb|BQ465180.1|BQ465180 HU02O01r HU Hordeum vulgare subsp. v... 246 1e-063
gb|BU984657.1|BU984657 HF04J15r HF Hordeum vulgare subsp. v... 246 1e-063
gb|BU989603.1|BU989603 HF22D02r HF Hordeum vulgare subsp. v... 246 1e-063
gb|BU990322.1|BU990322 HF24L02r HF Hordeum vulgare subsp. v... 246 1e-063
gb|CA004376.1|CA004376 HS17G12r HS Hordeum vulgare subsp. v... 246 1e-063
gb|CA004786.1|CA004786 HS18K24r HS Hordeum vulgare subsp. v... 246 1e-063
gb|CA009388.1|CA009388 HU13P20r HU Hordeum vulgare subsp. v... 246 1e-063
gb|BQ663198.1|BQ663198 HU01E09w HU Hordeum vulgare subsp. v... 244 5e-063
gb|BJ464281.1|BJ464281 BJ464281 K. Sato unpublished cDNA li... 238 3e-061
gb|BJ465037.1|BJ465037 BJ465037 K. Sato unpublished cDNA li... 238 3e-061
gb|BJ466728.1|BJ466728 BJ466728 K. Sato unpublished cDNA li... 238 3e-061
gb|BM369288.2|BM369288 EBem07_SQ003_C11_R embryo, 28 DPA, n... 238 3e-061
gb|BM369553.2|BM369553 EBem07_SQ003_P01_R embryo, 28 DPA, n... 238 3e-061
gb|BM098670.2|BM098670 EBem08_SQ003_L21_R embryo, 40 DPA, n... 238 3e-061
gb|BU994191.1|BU994191 HM06C01r HM Hordeum vulgare subsp. v... 238 3e-061
gb|BU994874.1|BU994874 HM08H11r HM Hordeum vulgare subsp. v... 238 3e-061
gb|CA004871.1|CA004871 HS18O20r HS Hordeum vulgare subsp. v... 238 3e-061
gb|CA008041.1|CA008041 HU09L19r HU Hordeum vulgare subsp. v... 238 3e-061
gb|CB880997.1|CB880997 HM08H11w HM Hordeum vulgare subsp. v... 238 3e-061
gb|CA004328.1|CA004328 HS17E06r HS Hordeum vulgare subsp. v... 234 4e-060
gb|BQ754412.1|BQ754412 EBca01_SQ003_O08_R carpel, pre-anthe... 222 2e-056
gb|CA005707.1|CA005707 HU08P16u HU Hordeum vulgare subsp. v... 198 2e-049
gb|CA018044.1|CA018044 HV07D21r HV Hordeum vulgare subsp. v... 194 4e-048
gb|BM098563.2|BM098563 EBem08_SQ003_G21_R embryo, 40 DPA, n... 180 6e-044
gb|CB880299.1|CB880299 HM06C01w HM Hordeum vulgare subsp. v... 180 6e-044
gb|BJ468105.1|BJ468105 BJ468105 K. Sato unpublished cDNA li... 172 1e-041
gb|CB882818.1|CB882818 HL02O21w HL Hordeum vulgare subsp. v... 155 3e-036
gb|CA007775.1|CA007775 HU08P16r HU Hordeum vulgare subsp. v... 125 3e-027
gb|AJ461862.1|AJ461862 AJ461862 S00002 Hordeum vulgare subs... 109 2e-022
gb|BQ660749.1|BQ660749 HI05E11u HI Hordeum vulgare subsp. v... 98 7e-019
gb|AJ461249.1|AJ461249 AJ461249 S00002 Hordeum vulgare subs... 94 1e-017
gb|CA022247.1|CA022247 HZ42J06r HZ Hordeum vulgare subsp. v... 94 1e-017
gb|BI950113.1|BI950113 HVSMEl0018L24f Hordeum vulgare spike... 92 4e-017
gb|BM096909.2|BM096909 EBma08_SQ001_P18_R maternal, 28 DPA,... 88 6e-016
gb|BU983139.1|BU983139 HA28K22r HA Hordeum vulgare subsp. v... 86 3e-015
gb|BE420585.1|BE420585 HWM000.D10 ITEC HWM Barley Leaf Libr... 84 1e-014
gb|BE420985.1|BE420985 HWM004.F02 ITEC HWM Barley Leaf Libr... 84 1e-014
gb|BE421050.1|BE421050 HWM005.C07 ITEC HWM Barley Leaf Libr... 84 1e-014
gb|BE421717.1|BE421717 HWM013cE.04r ITEC HWM Barley Leaf Li... 84 1e-014
gb|BF625588.2|BF625588 HVSMEa0011K14f Hordeum vulgare seedl... 84 1e-014
gb|BF618765.2|BF618765 HVSMEc0007L17f Hordeum vulgare seedl... 84 1e-014
gb|BI959614.1|BI959614 HVSMEn0020G21f Hordeum vulgare rachi... 84 1e-014
gb|BG343557.2|BG343557 HVSMEg0006G04f Hordeum vulgare pre-a... 84 1e-014
gb|BM098165.1|BM098165 EBpi03_SQ002_L17_R pistil, 4 DPA, no... 84 1e-014
gb|AV909403.1|AV909403 AV909403 K. Sato unpublished cDNA li... 84 1e-014
gb|AV911298.1|AV911298 AV911298 K. Sato unpublished cDNA li... 84 1e-014
gb|BQ469222.1|BQ469222 HM03M06r HM Hordeum vulgare subsp. v... 84 1e-014
gb|BM375844.2|BM375844 EBem06_SQ004_J05_R embryo, 21 DPA, n... 84 1e-014
gb|BI780941.2|BI780941 EBma05_SQ001_J10_R maternal, 12 DPA,... 84 1e-014
gb|BM372188.2|BM372188 EBro03_SQ004_E09_R root, 3 week, wat... 84 1e-014
gb|BI777995.2|BI777995 EBro07_SQ001_M02_R root, 3 week, red... 84 1e-014
gb|BU994411.1|BU994411 HM06P18r HM Hordeum vulgare subsp. v... 84 1e-014
gb|BU994797.1|BU994797 HM08D16r HM Hordeum vulgare subsp. v... 84 1e-014
gb|BU995059.1|BU995059 HM09B03r HM Hordeum vulgare subsp. v... 84 1e-014
gb|CB880582.1|CB880582 HM06P18w HM Hordeum vulgare subsp. v... 84 1e-014
gb|CB880919.1|CB880919 HM08D16w HM Hordeum vulgare subsp. v... 84 1e-014
gb|CB881200.1|CB881200 HM09B03w HM Hordeum vulgare subsp. v... 84 1e-014
gb|BI778326.2|BI778326 EBro07_SQ002_O06_R root, 3 week, red... 82 4e-014
gb|BM371465.2|BM371465 EBma08_SQ002_N08_R maternal, 28 DPA,... 80 2e-013
gb|BM097099.2|BM097099 EBpi07_SQ002_G09_R pistil, 12 DPA, n... 80 2e-013
gb|CB859349.1|CB859349 HI10D03w HI Hordeum vulgare subsp. v... 80 2e-013
gb|BU990569.1|BU990569 HF25H01r HF Hordeum vulgare subsp. v... 76 2e-012
gb|CV055316.1|CV055316 BNEL119b9 Barley EST endosperm libra... 76 2e-012
gb|CV059458.1|CV059458 BNEL48d12 Barley EST endosperm libra... 76 2e-012
gb|AJ461800.1|AJ461800 AJ461800 S00002 Hordeum vulgare subs... 74 1e-011
gb|BM100530.2|BM100530 EBma01_SQ005_H21_R maternal, 4 DPA, ... 74 1e-011
gb|BU973226.1|BU973226 HB24D01r BC Hordeum vulgare subsp. v... 74 1e-011
gb|BU988421.1|BU988421 HF17J12r HF Hordeum vulgare subsp. v... 74 1e-011
gb|CV057673.1|CV057673 BNEL2E11 Barley EST endosperm librar... 74 1e-011
gb|BF623191.2|BF623191 HVSMEa0015C05f Hordeum vulgare seedl... 72 4e-011
gb|AL505633.1|AL505633 AL505633 Hordeum vulgare Barke roots... 66 2e-009
gb|BF255418.3|BF255418 HVSMEf0006M22f Hordeum vulgare seedl... 66 2e-009
gb|BM376778.2|BM376778 EBem05_SQ003_D10_R embryo, 14 DPA, n... 66 2e-009
gb|BM373827.2|BM373827 EBma03_SQ002_N07_R maternal, 8 DPA, ... 66 2e-009
gb|CV060491.1|CV060491 BNEL58g11 Barley EST endosperm libra... 66 2e-009
gb|BF626724.1|BF626724 HVSMEb0001C21f Hordeum vulgare seedl... 64 9e-009
gb|AL505645.1|AL505645 AL505645 Hordeum vulgare Barke roots... 62 4e-008
gb|BG418614.2|BG418614 HVSMEk0023I02f Hordeum vulgare testa... 62 4e-008
gb|BQ467975.1|BQ467975 HR01I11r HR Hordeum vulgare subsp. v... 62 4e-008
gb|BQ763299.1|BQ763299 EBro02_SQ007_K19_R root, 3 week, hyd... 62 4e-008
gb|AL502892.1|AL502892 AL502892 Hordeum vulgare Barke roots... 58 6e-007
gb|BG344401.1|BG344401 HVSMEg0009C15f Hordeum vulgare pre-a... 58 6e-007
gb|AJ461922.1|AJ461922 AJ461922 S00002 Hordeum vulgare subs... 58 6e-007
gb|AJ462228.1|AJ462228 AJ462228 S00002 Hordeum vulgare subs... 58 6e-007
gb|BQ661490.1|BQ661490 HM03M06u HM Hordeum vulgare subsp. v... 58 6e-007
gb|AL503334.1|AL503334 AL503334 Hordeum vulgare Barke roots... 56 2e-006
gb|AL505285.1|AL505285 AL505285 Hordeum vulgare Barke roots... 56 2e-006
gb|BF257331.2|BF257331 HVSMEf0012J06f Hordeum vulgare seedl... 56 2e-006
gb|BF253395.3|BF253395 HVSMEf0001E23f Hordeum vulgare seedl... 56 2e-006
gb|BF254940.3|BF254940 HVSMEf0005H16f Hordeum vulgare seedl... 56 2e-006
gb|BF257923.3|BF257923 HVSMEf0014E01f Hordeum vulgare seedl... 56 2e-006
gb|BF260272.3|BF260272 HVSMEf0021I24f Hordeum vulgare seedl... 56 2e-006
gb|AV911446.1|AV911446 AV911446 K. Sato unpublished cDNA li... 56 2e-006
gb|AV924386.1|AV924386 AV924386 K. Sato unpublished cDNA li... 56 2e-006
gb|AV925407.1|AV925407 AV925407 K. Sato unpublished cDNA li... 56 2e-006
gb|AV929478.1|AV929478 AV929478 K. Sato unpublished cDNA li... 56 2e-006
gb|AV930561.1|AV930561 AV930561 K. Sato unpublished cDNA li... 56 2e-006
gb|BM816117.1|BM816117 HC113G07_SK.ab1 HC Hordeum vulgare s... 56 2e-006
gb|AJ434083.1|AJ434083 AJ434083 S00002 Hordeum vulgare subs... 56 2e-006
gb|BQ467852.1|BQ467852 HR01C06r HR Hordeum vulgare subsp. v... 56 2e-006
gb|BQ467952.1|BQ467952 HR01H05r HR Hordeum vulgare subsp. v... 56 2e-006
gb|BQ468082.1|BQ468082 HR01O09r HR Hordeum vulgare subsp. v... 56 2e-006
gb|BM443385.2|BM443385 EBro02_SQ003_N22_R root, 3 week, hyd... 56 2e-006
gb|BM370705.2|BM370705 EBro04_SQ001_O14_R root, 3 week, sal... 56 2e-006
gb|BI777804.2|BI777804 EBro08_SQ002_C04_R root, 3 week, dro... 56 2e-006
gb|BI777848.2|BI777848 EBro08_SQ002_E20_R root, 3 week, dro... 56 2e-006
gb|BQ760636.1|BQ760636 EBro03_SQ003_A21_R root, 3 week, wat... 56 2e-006
gb|BQ766010.1|BQ766010 EBro03_SQ008_E20_R root, 3 week, wat... 56 2e-006
gb|BF256140.2|BF256140 HVSMEf0008N22f Hordeum vulgare seedl... 54 9e-006
gb|BF256200.3|BF256200 HVSMEf0009B11f Hordeum vulgare seedl... 54 9e-006
gb|BF259425.3|BF259425 HVSMEf0019B06f Hordeum vulgare seedl... 54 9e-006
gb|AV912950.1|AV912950 AV912950 K. Sato unpublished cDNA li... 54 9e-006
gb|AV917706.1|AV917706 AV917706 K. Sato unpublished cDNA li... 54 9e-006
gb|AJ434576.1|AJ434576 AJ434576 S00002 Hordeum vulgare subs... 54 9e-006
gb|AJ436422.1|AJ436422 AJ436422 S00002 Hordeum vulgare subs... 54 9e-006
gb|AJ461779.1|AJ461779 AJ461779 S00002 Hordeum vulgare subs... 54 9e-006
gb|BJ452042.1|BJ452042 BJ452042 K. Sato unpublished cDNA li... 54 9e-006
gb|BJ459599.1|BJ459599 BJ459599 K. Sato unpublished cDNA li... 54 9e-006
gb|BQ468098.1|BQ468098 HR01P02r HR Hordeum vulgare subsp. v... 54 9e-006
gb|BQ763329.1|BQ763329 EBro02_SQ007_P23_R root, 3 week, hyd... 54 9e-006
gb|BQ765319.1|BQ765319 EBro03_SQ006_H19_R root, 3 week, wat... 54 9e-006
gb|BQ766691.1|BQ766691 EBro08_SQ006_I21_R root, 3 week, dro... 54 9e-006
gb|CA016183.1|CA016183 HV09O15u HV Hordeum vulgare subsp. v... 54 9e-006
gb|CA018876.1|CA018876 HV09O15r HV Hordeum vulgare subsp. v... 54 9e-006
gb|AL508349.1|AL508349 AL508349 Hordeum vulgare Barke devel... 52 4e-005
gb|AL508694.1|AL508694 AL508694 Hordeum vulgare Barke devel... 52 4e-005
gb|AL509508.1|AL509508 AL509508 Hordeum vulgare Barke devel... 52 4e-005
gb|BQ463291.1|BQ463291 HI04K24r HI Hordeum vulgare subsp. v... 52 4e-005
gb|BQ464379.1|BQ464379 HF02B20r HF Hordeum vulgare subsp. v... 52 4e-005
gb|BQ656814.1|BQ656814 HA02A21u HA Hordeum vulgare subsp. v... 52 4e-005
gb|BI776270.2|BI776270 EBem04_SQ001_F02_R embryo, 12 DPA, n... 52 4e-005
gb|BI779665.2|BI779665 EBem05_SQ001_A01_R embryo, 14 DPA, n... 52 4e-005
gb|BI779670.2|BI779670 EBem05_SQ001_A06_R embryo, 14 DPA, n... 52 4e-005
gb|BM098200.2|BM098200 EBpi03_SQ002_N09_R pistil, 4 DPA, no... 52 4e-005
gb|BI777839.2|BI777839 EBro08_SQ002_E06_R root, 3 week, dro... 52 4e-005
gb|BU984370.1|BU984370 HF03L21r HF Hordeum vulgare subsp. v... 52 4e-005
gb|BU985271.1|BU985271 HF06K04r HF Hordeum vulgare subsp. v... 52 4e-005
gb|BU987172.1|BU987172 HF14A02r HF Hordeum vulgare subsp. v... 52 4e-005
gb|BU987976.1|BU987976 HF16F02r HF Hordeum vulgare subsp. v... 52 4e-005
gb|BU988772.1|BU988772 HF18K17r HF Hordeum vulgare subsp. v... 52 4e-005
gb|CA022278.1|CA022278 HZ42K16r HZ Hordeum vulgare subsp. v... 52 4e-005
gb|CA025180.1|CA025180 HZ51G24r HZ Hordeum vulgare subsp. v... 52 4e-005
gb|CB858885.1|CB858885 HI08J20w HI Hordeum vulgare subsp. v... 52 4e-005
gb|CK123297.1|CK123297 BES1824103d11 BES1824 Hordeum vulgar... 52 4e-005
gb|BF619995.2|BF619995 HVSMEc0009P08f Hordeum vulgare seedl... 50 1e-004
gb|BF256432.2|BF256432 HVSMEf0009J20f Hordeum vulgare seedl... 50 1e-004
gb|AL500738.1|AL500738 AL500738 Hordeum vulgare Barke roots... 48 6e-004
gb|AL504058.1|AL504058 AL504058 Hordeum vulgare Barke roots... 48 6e-004
gb|BF259925.2|BF259925 HVSMEf0020K05f Hordeum vulgare seedl... 48 6e-004
gb|BF253600.3|BF253600 HVSMEf0001J16f Hordeum vulgare seedl... 48 6e-004
gb|AJ436541.1|AJ436541 AJ436541 S00002 Hordeum vulgare subs... 48 6e-004
gb|AJ463490.1|AJ463490 AJ463490 S00002 Hordeum vulgare subs... 48 6e-004
gb|AJ463491.1|AJ463491 AJ463491 S00002 Hordeum vulgare subs... 48 6e-004
gb|BQ467967.1|BQ467967 HR01H24r HR Hordeum vulgare subsp. v... 48 6e-004
gb|BQ662087.1|BQ662087 HR01H24u HR Hordeum vulgare subsp. v... 48 6e-004
gb|BI779275.2|BI779275 EBro01_SQ003_I12_R root, 3 week, hyd... 48 6e-004
gb|BM370011.2|BM370011 EBro08_SQ002_K19_R root, 3 week, dro... 48 6e-004
gb|BQ763927.1|BQ763927 EBro03_SQ005_E22 _R root, 3 week, wa... 48 6e-004
gb|BQ766496.1|BQ766496 EBro08_SQ006_B12_R root, 3 week, dro... 48 6e-004
gb|BQ768434.1|BQ768434 EBro08_SQ011_O17_R root, 3 week, dro... 48 6e-004
gb|CA020259.1|CA020259 HV14M16r HV Hordeum vulgare subsp. v... 48 6e-004
gb|AL505088.1|AL505088 AL505088 Hordeum vulgare Barke roots... 46 0.002
gb|BU989639.1|BU989639 HF22E18r HF Hordeum vulgare subsp. v... 46 0.002
gb|AL504225.1|AL504225 AL504225 Hordeum vulgare Barke roots... 44 0.009
gb|AL511572.1|AL511572 AL511572 Hordeum vulgare Barke devel... 44 0.009
gb|BF256355.2|BF256355 HVSMEf0009F13f Hordeum vulgare seedl... 44 0.009
gb|BF619116.2|BF619116 HVSMEc0011C05f Hordeum vulgare seedl... 44 0.009
gb|BM375240.2|BM375240 EBem06_SQ002_M19_R embryo, 21 DPA, n... 44 0.009
gb|CB859948.1|CB859948 HI12B20w HI Hordeum vulgare subsp. v... 44 0.009
gb|BE420572.1|BE420572 HWM000.C09 ITEC HWM Barley Leaf Libr... 42 0.034
gb|BE421032.1|BE421032 HWM005.B01 ITEC HWM Barley Leaf Libr... 42 0.034
gb|AL502368.1|AL502368 AL502368 Hordeum vulgare Barke roots... 42 0.034
gb|AL506651.1|AL506651 AL506651 Hordeum vulgare Barke devel... 42 0.034
gb|BF623256.2|BF623256 HVSMEa0016C03f Hordeum vulgare seedl... 42 0.034
gb|BF627475.2|BF627475 HVSMEb0004P08f Hordeum vulgare seedl... 42 0.034
gb|BI952837.1|BI952837 HVSMEm0007O18f Hordeum vulgare green... 42 0.034
gb|BF630841.3|BF630841 HVSMEb0014D08f Hordeum vulgare seedl... 42 0.034
gb|BF264237.3|BF264237 HV_CEa0008O05f Hordeum vulgare seedl... 42 0.034
gb|BF265428.3|BF265428 HV_CEa0012D19f Hordeum vulgare seedl... 42 0.034
gb|BM373612.2|BM373612 EBma03_SQ002_B20_R maternal, 8 DPA, ... 42 0.034
gb|BQ764044.1|BQ764044 EBro03_SQ006_J02_R root, 3 week, wat... 42 0.034
gb|BU998307.1|BU998307 HI10K07r HI Hordeum vulgare subsp. v... 42 0.034
gb|CA022574.1|CA022574 HZ43K20r HZ Hordeum vulgare subsp. v... 42 0.034
gb|CA022884.1|CA022884 HZ44K03r HZ Hordeum vulgare subsp. v... 42 0.034
gb|CA029260.1|CA029260 HZ64L03r HZ Hordeum vulgare subsp. v... 42 0.034
gb|CA029654.1|CA029654 HZ65N06r HZ Hordeum vulgare subsp. v... 42 0.034
gb|CB877095.1|CB877095 HP03I20T HP Hordeum vulgare subsp. v... 42 0.034
gb|CV056894.1|CV056894 BNEL21g5 Barley EST endosperm librar... 42 0.034
gb|BI778210.1|BI778210 EBro07_SQ002_I16_R root, 3 week, red... 40 0.14
gb|BI950729.1|BI950729 HVSMEl0023A02f Hordeum vulgare spike... 40 0.14
gb|BF264602.2|BF264602 HV_CEa0009N22f Hordeum vulgare seedl... 40 0.14
gb|BM816530.1|BM816530 HC105H06_T3.ab1 HC Hordeum vulgare s... 40 0.14
gb|BM816531.1|BM816531 HC110H09_T3.ab1 HC Hordeum vulgare s... 40 0.14
gb|BM816532.1|BM816532 HC105H05_T3.ab1 HC Hordeum vulgare s... 40 0.14
gb|BM816533.1|BM816533 HC105F06_T3.ab1 HC Hordeum vulgare s... 40 0.14
gb|BM816534.1|BM816534 HC109E06_T3.ab1 HC Hordeum vulgare s... 40 0.14
gb|BM816535.1|BM816535 HC105H02_T3.ab1 HC Hordeum vulgare s... 40 0.14
gb|BM816536.1|BM816536 HC114C11_SK.ab1 HC Hordeum vulgare s... 40 0.14
gb|BM816537.1|BM816537 HC108A03_SK.ab1 HC Hordeum vulgare s... 40 0.14
gb|BM817360.1|BM817360 HC106B05_T3.ab1 HC Hordeum vulgare s... 40 0.14
gb|AJ436602.1|AJ436602 AJ436602 S00002 Hordeum vulgare subs... 40 0.14
gb|BJ448342.1|BJ448342 BJ448342 K. Sato unpublished cDNA li... 40 0.14
gb|BJ456060.1|BJ456060 BJ456060 K. Sato unpublished cDNA li... 40 0.14
gb|BQ662077.1|BQ662077 HR01H05u HR Hordeum vulgare subsp. v... 40 0.14
gb|BQ754568.1|BQ754568 EBed01_SQ003_C23_R endosperm, 6 DPA,... 40 0.14
gb|CA024654.1|CA024654 HZ49O19r HZ Hordeum vulgare subsp. v... 40 0.14
gb|CA027544.1|CA027544 HZ59E07r HZ Hordeum vulgare subsp. v... 40 0.14
gb|CA032636.1|CA032636 HX13L22r HX Hordeum vulgare subsp. v... 40 0.14
gb|CB858312.1|CB858312 HI06J01w HI Hordeum vulgare subsp. v... 40 0.14
gb|CB858998.1|CB858998 HI08P12w HI Hordeum vulgare subsp. v... 40 0.14
gb|CB859638.1|CB859638 HI11B10w HI Hordeum vulgare subsp. v... 40 0.14
gb|CB878951.1|CB878951 HP10G17T HP Hordeum vulgare subsp. v... 40 0.14
gb|CV058731.1|CV058731 BNEL40c12 Barley EST endosperm libra... 40 0.14
gb|CK123693.1|CK123693 BES1824105b19 BES1824 Hordeum vulgar... 40 0.14
>gb|BQ463438.1|BQ463438 HI05E11r HI Hordeum vulgare subsp. vulgare cDNA clone HI05E11
5-PRIME, mRNA sequence
Length = 642
Score = 246 bits (124), Expect = 1e-063
Identities = 211/240 (87%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 34 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 93
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 94 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 153
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||||||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 154 gcggtgtgcctctgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 213
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 214 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 273
>gb|BQ464747.1|BQ464747 HU01E09T HU Hordeum vulgare subsp. vulgare cDNA clone HU01E09
5-PRIME, mRNA sequence
Length = 592
Score = 246 bits (124), Expect = 1e-063
Identities = 211/240 (87%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 33 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 92
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 93 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 152
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||||||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 153 gcggtgtgcctctgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 212
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 213 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 272
>gb|BQ465180.1|BQ465180 HU02O01r HU Hordeum vulgare subsp. vulgare cDNA clone HU02O01
5-PRIME, mRNA sequence
Length = 629
Score = 246 bits (124), Expect = 1e-063
Identities = 211/240 (87%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 77 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 136
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 137 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 196
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||||||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 197 gcggtgtgcctctgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 256
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 257 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 316
>gb|BU984657.1|BU984657 HF04J15r HF Hordeum vulgare subsp. vulgare cDNA clone HF04J15
5-PRIME, mRNA sequence
Length = 626
Score = 246 bits (124), Expect = 1e-063
Identities = 211/240 (87%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 30 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 89
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 90 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 149
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||||||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 150 gcggtgtgcctctgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 209
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 210 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 269
>gb|BU989603.1|BU989603 HF22D02r HF Hordeum vulgare subsp. vulgare cDNA clone HF22D02
5-PRIME, mRNA sequence
Length = 578
Score = 246 bits (124), Expect = 1e-063
Identities = 211/240 (87%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 25 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 84
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 85 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 144
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||||||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 145 gcggtgtgcctctgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 204
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 205 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 264
>gb|BU990322.1|BU990322 HF24L02r HF Hordeum vulgare subsp. vulgare cDNA clone HF24L02
5-PRIME, mRNA sequence
Length = 577
Score = 246 bits (124), Expect = 1e-063
Identities = 211/240 (87%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 25 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 84
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 85 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 144
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||||||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 145 gcggtgtgcctctgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 204
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 205 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 264
>gb|CA004376.1|CA004376 HS17G12r HS Hordeum vulgare subsp. vulgare cDNA clone HS17G12
5-PRIME, mRNA sequence
Length = 455
Score = 246 bits (124), Expect = 1e-063
Identities = 211/240 (87%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 69 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 128
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 129 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 188
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||||||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 189 gcggtgtgcctctgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 248
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 249 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 308
>gb|CA004786.1|CA004786 HS18K24r HS Hordeum vulgare subsp. vulgare cDNA clone HS18K24
5-PRIME, mRNA sequence
Length = 408
Score = 246 bits (124), Expect = 1e-063
Identities = 211/240 (87%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 31 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 90
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 91 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 150
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||||||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 151 gcggtgtgcctctgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 210
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 211 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 270
>gb|CA009388.1|CA009388 HU13P20r HU Hordeum vulgare subsp. vulgare cDNA clone HU13P20
5-PRIME, mRNA sequence
Length = 597
Score = 246 bits (124), Expect = 1e-063
Identities = 211/240 (87%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 154 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 213
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 214 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 273
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||||||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 274 gcggtgtgcctctgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 333
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 334 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 393
>gb|BQ663198.1|BQ663198 HU01E09w HU Hordeum vulgare subsp. vulgare cDNA clone HU01E09
3-PRIME, mRNA sequence
Length = 554
Score = 244 bits (123), Expect = 5e-063
Identities = 210/239 (87%)
Strand = Plus / Minus
Query: 105 acgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgg 164
||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||
Sbjct: 554 acgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctgg 495
Query: 165 ggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcgg 224
| |||||||| | || ||||||||||||||||||||||||||| || |||||| ||||||
Sbjct: 494 gcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcgg 435
Query: 225 cggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccca 284
||||| |||||||||| | |||| ||||||| ||| ||||||||||||||| ||||||
Sbjct: 434 cggtgtgcctctgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccca 375
Query: 285 tcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
|| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 374 tcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 316
>gb|BJ464281.1|BJ464281 BJ464281 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33k08 5', mRNA sequence
Length = 604
Score = 238 bits (120), Expect = 3e-061
Identities = 210/240 (87%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 57 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 116
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 117 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 176
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||| ||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 177 gcggtgtgcctgtgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 236
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 237 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 296
>gb|BJ465037.1|BJ465037 BJ465037 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c02 5', mRNA sequence
Length = 501
Score = 238 bits (120), Expect = 3e-061
Identities = 210/240 (87%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 52 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 111
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 112 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 171
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||| ||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 172 gcggtgtgcctgtgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 231
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 232 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 291
>gb|BJ466728.1|BJ466728 BJ466728 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33k08 3', mRNA sequence
Length = 568
Score = 238 bits (120), Expect = 3e-061
Identities = 210/240 (87%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 523 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 464
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 463 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 404
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||| ||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 403 gcggtgtgcctgtgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 344
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 343 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 284
>gb|BM369288.2|BM369288 EBem07_SQ003_C11_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_C11 5', mRNA sequence
Length = 578
Score = 238 bits (120), Expect = 3e-061
Identities = 210/240 (87%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 23 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 82
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 83 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 142
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||| ||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 143 gcggtgtgcctgtgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 202
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 203 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 262
>gb|BM369553.2|BM369553 EBem07_SQ003_P01_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_P01 5', mRNA sequence
Length = 551
Score = 238 bits (120), Expect = 3e-061
Identities = 210/240 (87%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 132 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 191
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 192 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 251
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||| ||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 252 gcggtgtgcctgtgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 311
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 312 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 371
>gb|BM098670.2|BM098670 EBem08_SQ003_L21_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_L21 5', mRNA sequence
Length = 518
Score = 238 bits (120), Expect = 3e-061
Identities = 210/240 (87%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 24 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 83
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 84 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 143
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||| ||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 144 gcggtgtgcctgtgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 203
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 204 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 263
>gb|BU994191.1|BU994191 HM06C01r HM Hordeum vulgare subsp. vulgare cDNA clone HM06C01
5-PRIME, mRNA sequence
Length = 551
Score = 238 bits (120), Expect = 3e-061
Identities = 210/240 (87%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 76 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 135
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 136 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 195
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||||||||| | |||| ||||||| ||| | ||||||||||||| |||||
Sbjct: 196 gcggtgtgcctctgcacggcgctcaaggccaacatccttgacatcaacctcaacgtgccc 255
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 256 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 315
>gb|BU994874.1|BU994874 HM08H11r HM Hordeum vulgare subsp. vulgare cDNA clone HM08H11
5-PRIME, mRNA sequence
Length = 654
Score = 238 bits (120), Expect = 3e-061
Identities = 210/240 (87%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 76 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 135
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 136 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 195
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||||||||| | |||| ||||||| ||| | ||||||||||||| |||||
Sbjct: 196 gcggtgtgcctctgcacggcgctcaaggccaacatccttgacatcaacctcaacgtgccc 255
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 256 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 315
>gb|CA004871.1|CA004871 HS18O20r HS Hordeum vulgare subsp. vulgare cDNA clone HS18O20
5-PRIME, mRNA sequence
Length = 468
Score = 238 bits (120), Expect = 3e-061
Identities = 210/240 (87%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
||||||||||||||||| |||||||||||| |||| ||||||||||||||| | |||
Sbjct: 84 gacgcgctgaagctgggtgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 143
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 144 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 203
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||||||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 204 gcggtgtgcctctgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 263
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 264 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 323
>gb|CA008041.1|CA008041 HU09L19r HU Hordeum vulgare subsp. vulgare cDNA clone HU09L19
5-PRIME, mRNA sequence
Length = 346
Score = 238 bits (120), Expect = 3e-061
Identities = 210/240 (87%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 98 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 157
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 158 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 217
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||||||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 218 gcggtgtgcctctgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 277
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct: 278 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgacggcttccagtgc 337
>gb|CB880997.1|CB880997 HM08H11w HM Hordeum vulgare subsp. vulgare cDNA clone HM08H11
3-PRIME, mRNA sequence
Length = 620
Score = 238 bits (120), Expect = 3e-061
Identities = 210/240 (87%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 613 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 554
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 553 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 494
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||||||||| | |||| ||||||| ||| | ||||||||||||| |||||
Sbjct: 493 gcggtgtgcctctgcacggcgctcaaggccaacatccttgacatcaacctcaacgtgccc 434
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 433 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 374
>gb|CA004328.1|CA004328 HS17E06r HS Hordeum vulgare subsp. vulgare cDNA clone HS17E06
5-PRIME, mRNA sequence
Length = 266
Score = 234 bits (118), Expect = 4e-060
Identities = 190/214 (88%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 51 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 110
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 111 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggaggcg 170
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||||||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 171 gcggtgtgcctctgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 230
Query: 284 atcaacctcagcctcctcgtcaactactgcggca 317
||| ||||||||||||||||||||||||||||||
Sbjct: 231 atcgacctcagcctcctcgtcaactactgcggca 264
>gb|BQ754412.1|BQ754412 EBca01_SQ003_O08_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ003_O08 5', mRNA sequence
Length = 393
Score = 222 bits (112), Expect = 2e-056
Identities = 209/240 (87%), Gaps = 1/240 (0%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 123 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 182
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| || ||
Sbjct: 183 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggag-cg 241
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||| ||||| | |||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 242 gcggtgtgcctgtgcacggcgctcaaggccaacatccttggcatcaacctcaacgtgccc 301
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 302 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccagtgc 361
>gb|CA005707.1|CA005707 HU08P16u HU Hordeum vulgare subsp. vulgare cDNA clone HU08P16
3-PRIME, mRNA sequence
Length = 535
Score = 198 bits (100), Expect = 2e-049
Identities = 187/216 (86%)
Strand = Plus / Minus
Query: 128 gccaacttgctgaacgggctgatcaacgcgaccctggggacgccgcccaggacgccgtgc 187
|||||| |||| ||||||||||||||| | ||||| |||||||| | || |||||||
Sbjct: 535 gccaacgtgctcaacgggctgatcaacctgcagctgggcacgccgccgaagaagccgtgc 476
Query: 188 tgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcaccgtcctc 247
|||||||||||||||||||| || |||||| ||||||||||| |||||||||| | |||
Sbjct: 475 tgcacgctgatccaggggctcgccgacctggaggcggcggtgtgcctctgcacggcgctc 416
Query: 248 agggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcctcgtcaac 307
| ||||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 415 aaggccaacatccttggcatcaacctcaacgtgcccatcgacctcagcctcctcgtcaac 356
Query: 308 tactgcggcaggcgcgtcccctcgggcttccagtgc 343
|||||||||| | ||||||| | ||||||||||||
Sbjct: 355 tactgcggcaagaacgtccccgccggcttccagtgc 320
>gb|CA018044.1|CA018044 HV07D21r HV Hordeum vulgare subsp. vulgare cDNA clone HV07D21
5-PRIME, mRNA sequence
Length = 440
Score = 194 bits (98), Expect = 4e-048
Identities = 202/240 (84%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
||||||| ||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 69 gacgcgcnnaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 128
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || |||||||||||||| ||||||||||| || |||||| |||||
Sbjct: 129 ggcacgccgccgaagaagccgtgctgcacgcnnatccaggggctcgccgacctggaggcg 188
Query: 224 gcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgccc 283
|||||| |||||||||| | |||| ||||||| ||| || |||||||||| |||||
Sbjct: 189 gcggtgtgcctctgcacggcgctcaaggccaacatccttggnnncaacctcaacgtgccc 248
Query: 284 atcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||| |||||||||||||||||||||||||||||| | ||||||| | ||||||||||
Sbjct: 249 atcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgcnnncttccagtgc 308
>gb|BM098563.2|BM098563 EBem08_SQ003_G21_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_G21 5', mRNA sequence
Length = 496
Score = 180 bits (91), Expect = 6e-044
Identities = 160/183 (87%)
Strand = Plus / Plus
Query: 161 ctggggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaag 220
||||| |||||||| | || ||||||||||||||||||||||||||| || |||||| ||
Sbjct: 11 ctgggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggag 70
Query: 221 gcggcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctg 280
||||||||| |||| ||||| | |||| ||||||| ||| ||||||||||||||| ||
Sbjct: 71 gcggcggtgtgcctgtgcacggcgctcaaggccaacatccttggcatcaacctcaacgtg 130
Query: 281 cccatcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccag 340
|||||| |||||||||||||||||||||||||||||| | ||||||| | |||||||||
Sbjct: 131 cccatcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccag 190
Query: 341 tgc 343
|||
Sbjct: 191 tgc 193
>gb|CB880299.1|CB880299 HM06C01w HM Hordeum vulgare subsp. vulgare cDNA clone HM06C01
3-PRIME, mRNA sequence
Length = 570
Score = 180 bits (91), Expect = 6e-044
Identities = 160/183 (87%)
Strand = Plus / Minus
Query: 161 ctggggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaag 220
||||| |||||||| | || ||||||||||||||||||||||||||| || |||||| ||
Sbjct: 557 ctgggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctggag 498
Query: 221 gcggcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctg 280
||||||||| |||||||||| | |||| ||||||| ||| | ||||||||||||| ||
Sbjct: 497 gcggcggtgtgcctctgcacggcgctcaaggccaacatccttgacatcaacctcaacgtg 438
Query: 281 cccatcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccag 340
|||||| |||||||||||||||||||||||||||||| | ||||||| | |||||||||
Sbjct: 437 cccatcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccag 378
Query: 341 tgc 343
|||
Sbjct: 377 tgc 375
>gb|BJ468105.1|BJ468105 BJ468105 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c02 3', mRNA sequence
Length = 597
Score = 172 bits (87), Expect = 1e-041
Identities = 143/162 (88%)
Strand = Plus / Minus
Query: 182 ccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcacc 241
|||||||||||||||||||||||||| || |||||||||||| ||||| |||| |||||
Sbjct: 597 ccgtgctgcacgctgatccaggggctcgccgacctgaaggcgncggtgtgcctgtgcacg 538
Query: 242 gtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcctc 301
| |||| ||||||| ||| ||||||||||||||| |||||||| ||||||||||||||
Sbjct: 537 gcgctcaaggccaacatccttggcatcaacctcaacgtgcccatcgacctcagcctcctc 478
Query: 302 gtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
|||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 477 gtcaactactgcggcaagaacgtccccgccggcttccagtgc 436
>gb|CB882818.1|CB882818 HL02O21w HL Hordeum vulgare subsp. vulgare cDNA clone HL02O21
3-PRIME, mRNA sequence
Length = 575
Score = 155 bits (78), Expect = 3e-036
Identities = 122/137 (89%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctg 163
|||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||
Sbjct: 432 gacgcgctgaagctgggcgtgtgcgccaacgtgctcaacgggctgatcaacctgcagctg 491
Query: 164 gggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcg 223
|| |||||||| | || ||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 492 ggcacgccgccgaagaagccgtgctgcacgctgatccaggggctcgccgacctgnaggcg 551
Query: 224 gcggtgggcctctgcac 240
|||||| ||||||||||
Sbjct: 552 gcggtgtgcctctgcac 568
>gb|CA007775.1|CA007775 HU08P16r HU Hordeum vulgare subsp. vulgare cDNA clone HU08P16
5-PRIME, mRNA sequence
Length = 175
Score = 125 bits (63), Expect = 3e-027
Identities = 108/123 (87%)
Strand = Plus / Plus
Query: 221 gcggcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctg 280
||||||||| |||||||||| | |||| ||||||| ||| ||||||||||||||| ||
Sbjct: 1 gcggcggtgtgcctctgcacggcgctcaaggccaacatccttggcatcaacctcaacgtg 60
Query: 281 cccatcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccag 340
|||||| |||||||||||||||||||||||||||||| | ||||||| | |||||||||
Sbjct: 61 cccatcgacctcagcctcctcgtcaactactgcggcaagaacgtccccgccggcttccag 120
Query: 341 tgc 343
|||
Sbjct: 121 tgc 123
>gb|AJ461862.1|AJ461862 AJ461862 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200032D03F1, mRNA sequence
Length = 180
Score = 109 bits (55), Expect = 2e-022
Identities = 88/99 (88%)
Strand = Plus / Plus
Query: 245 ctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcctcgtc 304
|||| ||||||| ||| ||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 13 ctcaaggccaacatccttggcatcaacctcaacgtgcccatcgacctcagcctcctcgtc 72
Query: 305 aactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||||||||||||| | ||||||| | ||||||||||||
Sbjct: 73 aactactgcggcaagaacgtccccgccggcttccagtgc 111
>gb|BQ660749.1|BQ660749 HI05E11u HI Hordeum vulgare subsp. vulgare cDNA clone HI05E11
3-PRIME, mRNA sequence
Length = 553
Score = 97.6 bits (49), Expect = 7e-019
Identities = 67/73 (91%)
Strand = Plus / Minus
Query: 245 ctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcctcgtc 304
|||| ||||||| ||| ||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 546 ctcaaggccaacatccttggcatcaacctcaacgtgcccatcgacctcagcctcctcgtc 487
Query: 305 aactactgcggca 317
|||||||||||||
Sbjct: 486 aactactgcggca 474
>gb|AJ461249.1|AJ461249 AJ461249 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200071C09F1, mRNA sequence
Length = 240
Score = 93.7 bits (47), Expect = 1e-017
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 269 aacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccc 328
||||||||| |||||||| |||||||||||||||||||||||||||||| | |||||||
Sbjct: 1 aacctcaacgtgcccatcgacctcagcctcctcgtcaactactgcggcaagaacgtcccc 60
Query: 329 tcgggcttccagtgc 343
| ||||||||||||
Sbjct: 61 gccggcttccagtgc 75
>gb|CA022247.1|CA022247 HZ42J06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42J06
5-PRIME, mRNA sequence
Length = 373
Score = 93.7 bits (47), Expect = 1e-017
Identities = 116/139 (83%)
Strand = Plus / Plus
Query: 102 tggacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccc 161
|||| |||||||||||||| |||||||| ||| |||| ||||||| | ||| ||| |
Sbjct: 176 tggatgcgctgaagctgggggtgtgcgcgaacgtgctcggcgggctgctgaacctgactc 235
Query: 162 tggggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaagg 221
|||||| ||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 236 tggggagcccgccggtgcagccgtgctgcacgctgatccaggggctggcggacctggagg 295
Query: 222 cggcggtgggcctctgcac 240
||||| || |||| |||||
Sbjct: 296 cggcgctgtgcctgtgcac 314
>gb|BI950113.1|BI950113 HVSMEl0018L24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0018L24f, mRNA sequence
Length = 887
Score = 91.7 bits (46), Expect = 4e-017
Identities = 112/134 (83%)
Strand = Plus / Minus
Query: 107 gcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgggg 166
|||||||||||||| |||||||| ||| |||| ||||||| | ||| ||| ||||||
Sbjct: 653 gcgctgaagctgggggtgtgcgcgaacgtgctcggcgggctgctgaacctgactctgggg 594
Query: 167 acgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcg 226
| ||||| | ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 593 agcccgccggtgcagccgtgctgcacgctgatccaggggctggcggacctggaggcggcg 534
Query: 227 gtgggcctctgcac 240
|| |||| |||||
Sbjct: 533 ctgtgcctgtgcac 520
Score = 79.8 bits (40), Expect = 2e-013
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 260 ctgggcatcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcagg 319
||||||||||||||| | |||||||| |||||||||| || ||||| |||||||||||
Sbjct: 500 ctgggcatcaacctccgcttgcccatcgccctcagcctcgtcctcaacaactgcggcagg 441
Query: 320 cgcgtcccctcgggcttccagtgc 343
||||||||| ||||||||||||
Sbjct: 440 aacgtcccctccggcttccagtgc 417
>gb|BM096909.2|BM096909 EBma08_SQ001_P18_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ001_P18 5', mRNA sequence
Length = 692
Score = 87.7 bits (44), Expect = 6e-016
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
||||||||||||||||||||||||||||||||||||| |||||||| || |||| |||||
Sbjct: 370 gccgtgctgcacgctgatccaggggctggcggacctggaggcggcgctgtgcctgtgcac 429
Score = 79.8 bits (40), Expect = 2e-013
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 260 ctgggcatcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcagg 319
||||||||||||||| | |||||||| |||||||||| || ||||| |||||||||||
Sbjct: 449 ctgggcatcaacctccgcttgcccatcgccctcagcctcgtcctcaacaactgcggcagg 508
Query: 320 cgcgtcccctcgggcttccagtgc 343
||||||||| ||||||||||||
Sbjct: 509 aacgtcccctccggcttccagtgc 532
>gb|BU983139.1|BU983139 HA28K22r HA Hordeum vulgare subsp. vulgare cDNA clone HA28K22
5-PRIME, mRNA sequence
Length = 559
Score = 85.7 bits (43), Expect = 3e-015
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 96 gccccgtggacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacg 155
||||| |||| |||||||||||||| |||||||| ||| |||| ||||||| | |||
Sbjct: 40 gccccctggatgcgctgaagctgggggtgtgcgcgaacgtgctcggcgggctgctgaacc 99
Query: 156 cgaccctggggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacc 215
||| ||||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 100 tgactctggggagcccgccggtgcagccgtgctgcacgctgatccaggggctggcggacc 159
Query: 216 tgaaggc 222
|| ||||
Sbjct: 160 tggaggc 166
Score = 71.9 bits (36), Expect = 4e-011
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 260 ctgggcatcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcagg 319
|||||||| |||||| | |||||||| |||||||||| || ||||| |||||||||||
Sbjct: 204 ctgggcattaacctccgcttgcccatcgccctcagcctcgtcctcaacaactgcggcagg 263
Query: 320 cgcgtcccctcgggcttccagtgc 343
||||||||| ||||||||||||
Sbjct: 264 aacgtcccctccggcttccagtgc 287
>gb|BE420585.1|BE420585 HWM000.D10 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM000.D10, mRNA sequence
Length = 1027
Score = 83.8 bits (42), Expect = 1e-014
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 206 ctggcggacctgaaggcggcggtgggcctctgcaccgtcctcagggccaacggcctgggc 265
||||| ||||| |||| || ||| |||||||||||| |||| |||||||| ||| |||
Sbjct: 142 ctggccgacctcgaggccgccgtgtgcctctgcaccgcgctcaaggccaacgtcctcggc 201
Query: 266 atcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcaggcgcgtc 325
||| ||||||| | ||| |||| |||||||||||| ||||||||||||||| | || |
Sbjct: 202 atcgtcctcaacatccccgtcaagctcagcctcctcctcaactactgcggcaagaccgcc 261
Query: 326 ccctcgggcttccagtgc 343
||| |||||||||||||
Sbjct: 262 cccaagggcttccagtgc 279
>gb|BE420985.1|BE420985 HWM004.F02 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.F02, mRNA sequence
Length = 1172
Score = 83.8 bits (42), Expect = 1e-014
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 206 ctggcggacctgaaggcggcggtgggcctctgcaccgtcctcagggccaacggcctgggc 265
||||| ||||| |||| || ||| |||||||||||| |||| |||||||| ||| |||
Sbjct: 204 ctggccgacctcgaggccgccgtgtgcctctgcaccgcgctcaaggccaacgtcctcggc 263
Query: 266 atcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcaggcgcgtc 325
||| ||||||| | ||| |||| |||||||||||| ||||||||||||||| | || |
Sbjct: 264 atcgtcctcaacatccccgtcaagctcagcctcctcctcaactactgcggcaagaccgcc 323
Query: 326 ccctcgggcttccagtgc 343
||| |||||||||||||
Sbjct: 324 cccaagggcttccagtgc 341
>gb|BE421050.1|BE421050 HWM005.C07 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM005.C07, mRNA sequence
Length = 1151
Score = 83.8 bits (42), Expect = 1e-014
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 206 ctggcggacctgaaggcggcggtgggcctctgcaccgtcctcagggccaacggcctgggc 265
||||| ||||| |||| || ||| |||||||||||| |||| |||||||| ||| |||
Sbjct: 201 ctggccgacctcgaggccgccgtgtgcctctgcaccgcgctcaaggccaacgtcctcggc 260
Query: 266 atcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcaggcgcgtc 325
||| ||||||| | ||| |||| |||||||||||| ||||||||||||||| | || |
Sbjct: 261 atcgtcctcaacatccccgtcaagctcagcctcctcctcaactactgcggcaagaccgcc 320
Query: 326 ccctcgggcttccagtgc 343
||| |||||||||||||
Sbjct: 321 cccaagggcttccagtgc 338
>gb|BE421717.1|BE421717 HWM013cE.04r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM013cE.04, mRNA sequence
Length = 586
Score = 83.8 bits (42), Expect = 1e-014
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 206 ctggcggacctgaaggcggcggtgggcctctgcaccgtcctcagggccaacggcctgggc 265
||||| ||||| |||| || ||| |||||||||||| |||| |||||||| ||| |||
Sbjct: 69 ctggccgacctcgaggccgccgtgtgcctctgcaccgcgctcaaggccaacgtcctcggc 128
Query: 266 atcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcaggcgcgtc 325
||| ||||||| | ||| |||| |||||||||||| ||||||||||||||| | || |
Sbjct: 129 atcgtcctcaacatccccgtcaagctcagcctcctcctcaactactgcggcaagaccgcc 188
Query: 326 ccctcgggcttccagtgc 343
||| |||||||||||||
Sbjct: 189 cccaagggcttccagtgc 206
>gb|BF625588.2|BF625588 HVSMEa0011K14f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011K14f, mRNA sequence
Length = 637
Score = 83.8 bits (42), Expect = 1e-014
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 206 ctggcggacctgaaggcggcggtgggcctctgcaccgtcctcagggccaacggcctgggc 265
||||| ||||| |||| || ||| |||||||||||| |||| |||||||| ||| |||
Sbjct: 150 ctggccgacctcgaggccgccgtgtgcctctgcaccgcgctcaaggccaacgtcctcggc 209
Query: 266 atcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcaggcgcgtc 325
||| ||||||| | ||| |||| |||||||||||| ||||||||||||||| | || |
Sbjct: 210 atcgtcctcaacatccccgtcaagctcagcctcctcctcaactactgcggcaagaccgcc 269
Query: 326 ccctcgggcttccagtgc 343
||| |||||||||||||
Sbjct: 270 cccaagggcttccagtgc 287
>gb|BF618765.2|BF618765 HVSMEc0007L17f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0007L17f, mRNA sequence
Length = 554
Score = 83.8 bits (42), Expect = 1e-014
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 206 ctggcggacctgaaggcggcggtgggcctctgcaccgtcctcagggccaacggcctgggc 265
||||| ||||| |||| || ||| |||||||||||| |||| |||||||| ||| |||
Sbjct: 346 ctggccgacctcgaggccgccgtgtgcctctgcaccgcgctcaaggccaacgtcctcggc 405
Query: 266 atcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcaggcgcgtc 325
||| ||||||| | ||| |||| |||||||||||| ||||||||||||||| | || |
Sbjct: 406 atcgtcctcaacatccccgtcaagctcagcctcctcctcaactactgcggcaagaccgcc 465
Query: 326 ccctcgggcttccagtgc 343
||| |||||||||||||
Sbjct: 466 cccaagggcttccagtgc 483
>gb|BI959614.1|BI959614 HVSMEn0020G21f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020G21f, mRNA sequence
Length = 668
Score = 83.8 bits (42), Expect = 1e-014
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 206 ctggcggacctgaaggcggcggtgggcctctgcaccgtcctcagggccaacggcctgggc 265
||||| ||||| |||| || ||| |||||||||||| |||| |||||||| ||| |||
Sbjct: 350 ctggccgacctcgaggccgccgtgtgcctctgcaccgcgctcaaggccaacgtcctcggc 409
Query: 266 atcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcaggcgcgtc 325
||| ||||||| | ||| |||| |||||||||||| ||||||||||||||| | || |
Sbjct: 410 atcgtcctcaacatccccgtcaagctcagcctcctcctcaactactgcggcaagaccgcc 469
Query: 326 ccctcgggcttccagtgc 343
||| |||||||||||||
Sbjct: 470 cccaagggcttccagtgc 487
>gb|BG343557.2|BG343557 HVSMEg0006G04f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006G04f, mRNA sequence
Length = 947
Score = 83.8 bits (42), Expect = 1e-014
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 206 ctggcggacctgaaggcggcggtgggcctctgcaccgtcctcagggccaacggcctgggc 265
||||| ||||| |||| || ||| |||||||||||| |||| |||||||| ||| |||
Sbjct: 130 ctggccgacctcgaggccgccgtgtgcctctgcaccgcgctcaaggccaacgtcctcggc 189
Query: 266 atcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcaggcgcgtc 325
||| ||||||| | ||| |||| |||||||||||| ||||||||||||||| | || |
Sbjct: 190 atcgtcctcaacatccccgtcaagctcagcctcctcctcaactactgcggcaagaccgcc 249
Query: 326 ccctcgggcttccagtgc 343
||| |||||||||||||
Sbjct: 250 cccaagggcttccagtgc 267
>gb|BM098165.1|BM098165 EBpi03_SQ002_L17_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_L17 5', mRNA sequence
Length = 435
Score = 83.8 bits (42), Expect = 1e-014
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 206 ctggcggacctgaaggcggcggtgggcctctgcaccgtcctcagggccaacggcctgggc 265
||||| ||||| |||| || ||| |||||||||||| |||| |||||||| ||| |||
Sbjct: 86 ctggccgacctcgaggccgccgtgtgcctctgcaccgcgctcaaggccaacgtcctcggc 145
Query: 266 atcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcaggcgcgtc 325
||| ||||||| | ||| |||| |||||||||||| ||||||||||||||| | || |
Sbjct: 146 atcgtcctcaacatccccgtcaagctcagcctcctcctcaactactgcggcaagaccgcc 205
Query: 326 ccctcgggcttccagtgc 343
||| |||||||||||||
Sbjct: 206 cccaagggcttccagtgc 223
>gb|AV909403.1|AV909403 AV909403 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12l15 5', mRNA sequence
Length = 543
Score = 83.8 bits (42), Expect = 1e-014
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 206 ctggcggacctgaaggcggcggtgggcctctgcaccgtcctcagggccaacggcctgggc 265
||||| ||||| |||| || ||| |||||||||||| |||| |||||||| ||| |||
Sbjct: 93 ctggccgacctcgaggccgccgtgtgcctctgcaccgcgctcaaggccaacgtcctcggc 152
Query: 266 atcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcaggcgcgtc 325
||| ||||||| | ||| |||| |||||||||||| ||||||||||||||| | || |
Sbjct: 153 atcgtcctcaacatccccgtcaagctcagcctcctcctcaactactgcggcaagaccgcc 212
Query: 326 ccctcgggcttccagtgc 343
||| |||||||||||||
Sbjct: 213 cccaagggcttccagtgc 230
>gb|AV911298.1|AV911298 AV911298 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12l15 3', mRNA sequence
Length = 498
Score = 83.8 bits (42), Expect = 1e-014
Identities = 114/138 (82%)
Strand = Plus / Minus
Query: 206 ctggcggacctgaaggcggcggtgggcctctgcaccgtcctcagggccaacggcctgggc 265
||||| ||||| |||| || ||| |||||||||||| |||| |||||||| ||| |||
Sbjct: 411 ctggccgacctcgaggccgccgtgtgcctctgcaccgcgctcaaggccaacgtcctcggc 352
Query: 266 atcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcaggcgcgtc 325
||| ||||||| | ||| |||| |||||||||||| ||||||||||||||| | || |
Sbjct: 351 atcgtcctcaacatccccgtcaagctcagcctcctcctcaactactgcggcaagaccgcc 292
Query: 326 ccctcgggcttccagtgc 343
||| |||||||||||||
Sbjct: 291 cccaagggcttccagtgc 274
>gb|BQ469222.1|BQ469222 HM03M06r HM Hordeum vulgare subsp. vulgare cDNA clone HM03M06
5-PRIME, mRNA sequence
Length = 588
Score = 83.8 bits (42), Expect = 1e-014
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 206 ctggcggacctgaaggcggcggtgggcctctgcaccgtcctcagggccaacggcctgggc 265
||||| ||||| |||| || ||| |||||||||||| |||| |||||||| ||| |||
Sbjct: 356 ctggccgacctcgaggccgccgtgtgcctctgcaccgcgctcaaggccaacgtcctcggc 415
Query: 266 atcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcaggcgcgtc 325
||| ||||||| | ||| |||| |||||||||||| ||||||||||||||| | || |
Sbjct: 416 atcgtcctcaacatccccgtcaagctcagcctcctcctcaactactgcggcaagaccgcc 475
Query: 326 ccctcgggcttccagtgc 343
||| |||||||||||||
Sbjct: 476 cccaagggcttccagtgc 493
>gb|BM375844.2|BM375844 EBem06_SQ004_J05_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ004_J05 5', mRNA sequence
Length = 542
Score = 83.8 bits (42), Expect = 1e-014
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 206 ctggcggacctgaaggcggcggtgggcctctgcaccgtcctcagggccaacggcctgggc 265
||||| ||||| |||| || ||| |||||||||||| |||| |||||||| ||| |||
Sbjct: 346 ctggccgacctcgaggccgccgtgtgcctctgcaccgcgctcaaggccaacgtcctcggc 405
Query: 266 atcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcaggcgcgtc 325
||| ||||||| | ||| |||| |||||||||||| ||||||||||||||| | || |
Sbjct: 406 atcgtcctcaacatccccgtcaagctcagcctcctcctcaactactgcggcaagaccgcc 465
Query: 326 ccctcgggcttccagtgc 343
||| |||||||||||||
Sbjct: 466 cccaagggcttccagtgc 483
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 169,145
Number of Sequences: 312970
Number of extensions: 169145
Number of successful extensions: 54689
Number of sequences better than 0.5: 217
Number of HSP's better than 0.5 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54106
Number of HSP's gapped (non-prelim): 553
length of query: 989
length of database: 175,134,539
effective HSP length: 19
effective length of query: 970
effective length of database: 169,188,109
effective search space: 164112465730
effective search space used: 164112465730
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)