BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418861.2.2
(1617 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV932909.1|AV932909 AV932909 K. Sato unpublished cDNA li... 628 e-178
gb|BJ472039.1|BJ472039 BJ472039 K. Sato unpublished cDNA li... 563 e-159
gb|BU990099.1|BU990099 HF24B10r HF Hordeum vulgare subsp. v... 563 e-159
gb|AV932668.1|AV932668 AV932668 K. Sato unpublished cDNA li... 559 e-157
gb|AL507698.1|AL507698 AL507698 Hordeum vulgare Barke devel... 549 e-154
gb|CA028274.1|CA028274 HZ61I02r HZ Hordeum vulgare subsp. v... 549 e-154
gb|CK122610.1|CK122610 BES1824104j23 BES1824 Hordeum vulgar... 519 e-146
gb|BU975772.1|BU975772 HB32E04r BC Hordeum vulgare subsp. v... 480 e-134
gb|BG300712.2|BG300712 HVSMEb0018B21f Hordeum vulgare seedl... 478 e-133
gb|BU989178.1|BU989178 HF21A09r HF Hordeum vulgare subsp. v... 472 e-131
gb|BU971669.1|BU971669 HB19E23r BC Hordeum vulgare subsp. v... 460 e-128
gb|AV932284.1|AV932284 AV932284 K. Sato unpublished cDNA li... 434 e-120
gb|BU984788.1|BU984788 HF05A10r HF Hordeum vulgare subsp. v... 430 e-119
gb|CA012169.1|CA012169 HT04K11r HT Hordeum vulgare subsp. v... 430 e-119
gb|BQ472834.1|BQ472834 HB01F10r BC Hordeum vulgare subsp. v... 396 e-109
gb|BU987084.1|BU987084 HF13M04r HF Hordeum vulgare subsp. v... 394 e-108
gb|BE215659.3|BE215659 HV_CEb0007L14f Hordeum vulgare seedl... 392 e-107
gb|CA028533.1|CA028533 HZ62F08r HZ Hordeum vulgare subsp. v... 341 4e-092
gb|BQ468511.1|BQ468511 HM01H13T HM Hordeum vulgare subsp. v... 339 2e-091
gb|BU974041.1|BU974041 HB26L16r BC Hordeum vulgare subsp. v... 309 2e-082
gb|BQ756038.1|BQ756038 EBem05_SQ001_G05_R embryo, 14 DPA, n... 293 9e-078
gb|CA023543.1|CA023543 HZ46J08r HZ Hordeum vulgare subsp. v... 283 9e-075
gb|AV928811.1|AV928811 AV928811 K. Sato unpublished cDNA li... 266 2e-069
gb|AV917169.1|AV917169 AV917169 K. Sato unpublished cDNA li... 262 3e-068
gb|AV919894.1|AV919894 AV919894 K. Sato unpublished cDNA li... 210 1e-052
gb|AV926015.1|AV926015 AV926015 K. Sato unpublished cDNA li... 204 7e-051
gb|AJ436543.1|AJ436543 AJ436543 S00002 Hordeum vulgare subs... 145 5e-033
gb|BQ757070.1|BQ757070 EBem10_SQ002_L08_R embryo, 2 Day ger... 103 2e-020
gb|BE437615.1|BE437615 SFR005.F09F990624 ITEC SFR Barley Le... 82 7e-014
gb|BE437679.1|BE437679 SFR006.D02F990705 ITEC SFR Barley Le... 82 7e-014
gb|CA027539.1|CA027539 HZ59E02r HZ Hordeum vulgare subsp. v... 70 2e-010
gb|BI960796.1|BI960796 HVSMEk0024C19f Hordeum vulgare testa... 68 1e-009
gb|BG418707.2|BG418707 HVSMEk0024A21f Hordeum vulgare testa... 68 1e-009
gb|BF253431.2|BF253431 HVSMEf0001G11f Hordeum vulgare seedl... 58 1e-006
gb|AL506893.1|AL506893 AL506893 Hordeum vulgare Barke devel... 40 0.22
gb|BM376038.2|BM376038 EBma01_SQ002_C15_R maternal, 4 DPA, ... 40 0.22
>gb|AV932909.1|AV932909 AV932909 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal4j24 5', mRNA sequence
Length = 677
Score = 628 bits (317), Expect = e-178
Identities = 572/657 (87%)
Strand = Plus / Minus
Query: 755 gtgggttgcattgttaggatcatagtgatccgtaatgcaccactcgtacacggcaaagca 814
||||||||||||||| |||||||||||||| |||||||||||||| || || ||||| ||
Sbjct: 677 gtgggttgcattgtttggatcatagtgatcggtaatgcaccactcatatacagcaaaaca 618
Query: 815 ctggccaggcttcaacacacgatatatctccttgtagcaaccaactggatcaggtgcatg 874
||| || || || || ||||| || |||||||| ||||| ||||| |||||||| || ||
Sbjct: 617 ctgcccgggttttaatacacggtagatctccttatagcagccaaccggatcaggcgcgtg 558
Query: 875 acatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggcatcttcat 934
||||||||||||||||| |||||||||||||||||||| ||| ||| |||||||||||
Sbjct: 557 gcatgttgcctcaatggcataaacagcatcaaaagtgttatcagagaatggcatcttcat 498
Query: 935 gaagtccgccttgacaaaatcacatgttccactaattcctgctaaacggttgagctcctt 994
|||||| ||||||||||||||||| |||||||||| |||| | | || || ||||||||
Sbjct: 497 gaagtctgccttgacaaaatcacaagttccactaagtcctacagaccgattaagctcctt 438
Query: 995 tcccctggttatctggtattcgttgttattcaatccggtaactgaagttgagctaaatct 1054
|||||| ||||||||||| |||||||| |||||||| |||||||| || |||||||||||
Sbjct: 437 tcccctagttatctggtagtcgttgttgttcaatccagtaactgaggtggagctaaatct 378
Query: 1055 tgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcattcctgg 1114
||||||||||| | || || |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 377 cgcaatttctcttaacggcccgcctattccacagccgacatccaaaaccttcatccctgg 318
Query: 1115 tttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaagga 1174
|||||| |||| || ||||| ||||| ||||| || || ||||| ||||| | ||| ||
Sbjct: 317 tttcaactcaagctgtagggccagaaagtgctcgtgccgtttgatactttcccttaaaga 258
Query: 1175 ttctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatagaagct 1234
||||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 257 ttctccactccacctgtgagcaaagtggaaggattcaccccagccatactcgtagaagct 198
Query: 1235 agtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgcttcctc 1294
||| ||||||||||||||||||||||||||||| || |||||||| ||||| | ||||||
Sbjct: 197 agtagcaagatcatagtatttattaaccatatcggtgtagttggatttcctcgattcctc 138
Query: 1295 cttccctccatagtatccatgatatttctcatactcatcgacggccgacttgacttccac 1354
|||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||| |
Sbjct: 137 cttccctccataatatccatgatatttctcatactcgtcgaccgccgatttgacttgttc 78
Query: 1355 cttgttgatcttccctccgaggccagaagcaagatccagcgctcccgacttggacat 1411
||||| ||||||||| || ||||| || || |||||||| |||||||||||||||||
Sbjct: 77 cttgtcgatcttcccgccaaggcccgacgcgagatccagggctcccgacttggacat 21
>gb|BJ472039.1|BJ472039 BJ472039 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal31k11 5', mRNA sequence
Length = 628
Score = 563 bits (284), Expect = e-159
Identities = 543/628 (86%), Gaps = 1/628 (0%)
Strand = Plus / Minus
Query: 778 agtgatccgtaatgcaccactcgtacacggcaaagcactggccaggcttcaacacacgat 837
||||||| |||||||||||||| || || ||||| ||||| || || || || ||||| |
Sbjct: 628 agtgatcggtaatgcaccactcatatacagcaaaacactgcccgggttttaatacacggt 569
Query: 838 atatctccttgtagcaaccaactggatcaggtgcatgacatgttgcctcaatggcgtaaa 897
| |||||||| ||||| ||||| |||||||| || || ||||||||||||||||| ||||
Sbjct: 568 agatctccttatagcagccaaccggatcaggcgcgtggcatgttgcctcaatggcataaa 509
Query: 898 cagcatcaaaagtgttgtcatcgaacggcatcttcatgaagtccgccttgacaaaatcac 957
|||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct: 508 cagcatcaaaagtgttatcagagaatggcatcttcatgaagtctgccttgacaaaatcac 449
Query: 958 atgttccactaattcctgctaaacggttgagctcctttcccctggttatctggtattcgt 1017
| |||||||||| |||| | | || || |||||||||||||| ||||||||||| ||||
Sbjct: 448 aagttccactaagtcctacagaccgattaagctcctttcccctagttatctggtagtcgt 389
Query: 1018 tgttattcaatccggtaactgaagttgagctaaatcttgcaatttctctcagtggtccac 1077
|||| |||||||| |||||||| || ||||||||||| ||||||||||| | || || |
Sbjct: 388 tgttgttcaatccagtaactgaggtggagctaaatctcgcaatttctcttaacggcccgc 329
Query: 1078 ctattccacagcccacatctaaaaccttcattcctggtttcaaaccaagttgcagggcaa 1137
||||||||||||| ||||| ||||||||||| ||||||||||| |||| || ||||| |
Sbjct: 328 ctattccacagccgacatccaaaaccttcatccctggtttcaactcaagctgtagggcca 269
Query: 1138 gaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctgtgagcaa 1197
|||| ||||| || || ||||| ||||| | ||| ||||||||| |||| ||||||||||
Sbjct: 268 gaaagtgctcgtgccgtttgatactttcccttaaagattctccactccacctgtgagcaa 209
Query: 1198 agtggaaggattcaccccaaccatactcatagaagctagtggcaagatcatagtatttat 1257
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct: 208 agtggaaggattcaccccagccatactcgtagaagctagtagcaagatcatagtatttat 149
Query: 1258 taaccatatcagtatagttggacttccttgcttcctccttccctccatagtatccatgat 1317
|||||||||| || |||||||| ||||| | |||||||||||||||||| ||||||||||
Sbjct: 148 taaccatatcggtgtagttggatttcctcgattcctccttccctccataatatccatgat 89
Query: 1318 atttctcatactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggc 1377
||||||||||||| ||||| ||||| ||||||| |||||| ||||||||| || ||||
Sbjct: 88 atttctcatactcgtcgaccgccgatttgacttgttccttgtcgatcttcccgccaaggc 29
Query: 1378 cagaagcaagat-ccagcgctcccgact 1404
| || || |||| |||| ||||||||||
Sbjct: 28 ccgacgcgagatnccagggctcccgact 1
>gb|BU990099.1|BU990099 HF24B10r HF Hordeum vulgare subsp. vulgare cDNA clone HF24B10
5-PRIME, mRNA sequence
Length = 592
Score = 563 bits (284), Expect = e-159
Identities = 500/572 (87%)
Strand = Plus / Minus
Query: 594 cttggatccaagggcaagtaccaaggcaagggagaatcttcagcaagatccttatcccaa 653
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 576 cttgggtccaagggcaagtaccaaggcaatggagaatcttcagcaagatccttatcccaa 517
Query: 654 acaacctcaaacccggcgtcttttactgcctggagacattgccgagtgcttctgatatct 713
| |||||||||||| || ||||| || || || |||||||||||||| ||||||||||||
Sbjct: 516 ataacctcaaacccagcatctttaacagcttgaagacattgccgagtacttctgatatct 457
Query: 714 ggcaggccattgccaagctcaatttcatccttgatccttttgtgggttgcattgttagga 773
|||||||| || |||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 456 ggcaggccgttaccaagctcaatttcatccttaatcctcttgtgggttgcattgtttgga 397
Query: 774 tcatagtgatccgtaatgcaccactcgtacacggcaaagcactggccaggcttcaacaca 833
||||||||||| |||||||||||||| || || ||||| ||||| || || || || |||
Sbjct: 396 tcatagtgatcggtaatgcaccactcatatacagcaaaacactgcccgggttttaataca 337
Query: 834 cgatatatctccttgtagcaaccaactggatcaggtgcatgacatgttgcctcaatggcg 893
|| || |||||||| ||||| ||||| |||||||| || || |||||||||||||||||
Sbjct: 336 cggtagatctccttatagcagccaaccggatcaggcgcgtggcatgttgcctcaatggca 277
Query: 894 taaacagcatcaaaagtgttgtcatcgaacggcatcttcatgaagtccgccttgacaaaa 953
|||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||||
Sbjct: 276 taaacagcatcaaaagtgttatcagagaatggcatcttcatgaagtctgccttgacaaaa 217
Query: 954 tcacatgttccactaattcctgctaaacggttgagctcctttcccctggttatctggtat 1013
||||| |||||||||| |||| | | || || |||||||||||||| |||||||||||
Sbjct: 216 tcacaagttccactaagtcctacagaccgattaagctcctttcccctagttatctggtag 157
Query: 1014 tcgttgttattcaatccggtaactgaagttgagctaaatcttgcaatttctctcagtggt 1073
|||||||| |||||||| |||||||| || ||||||||||| ||||||||||| | ||
Sbjct: 156 tcgttgttgttcaatccagtaactgaggtggagctaaatctcgcaatttctcttaacggc 97
Query: 1074 ccacctattccacagcccacatctaaaaccttcattcctggtttcaaaccaagttgcagg 1133
|| |||||||||||||| ||||| ||||||||||| ||||||||||| |||| || |||
Sbjct: 96 ccgcctattccacagccgacatccaaaaccttcatccctggtttcaactcaagctgtagg 37
Query: 1134 gcaagaaaatgctcatgtcgcttgatgctttc 1165
|| ||||| ||||| || || ||||| |||||
Sbjct: 36 gccagaaagtgctcgtgccgtttgatactttc 5
>gb|AV932668.1|AV932668 AV932668 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1j14 5', mRNA sequence
Length = 580
Score = 559 bits (282), Expect = e-157
Identities = 504/578 (87%)
Strand = Plus / Minus
Query: 773 atcatagtgatccgtaatgcaccactcgtacacggcaaagcactggccaggcttcaacac 832
|||||||||||| |||||||||||||| || || ||||| ||||| || || || || ||
Sbjct: 580 atcatagtgatcggtaatgcaccactcatatacagcaaaacactgcccgggttttaatac 521
Query: 833 acgatatatctccttgtagcaaccaactggatcaggtgcatgacatgttgcctcaatggc 892
||| || |||||||| ||||| ||||| |||||||| || || |||||||||||||||||
Sbjct: 520 acggtagatctccttatagcagccaaccggatcaggcgcgtggcatgttgcctcaatggc 461
Query: 893 gtaaacagcatcaaaagtgttgtcatcgaacggcatcttcatgaagtccgccttgacaaa 952
|||||||||||||||||||| ||| ||| ||||||||||||||||| |||||||||||
Sbjct: 460 ataaacagcatcaaaagtgttatcagagaatggcatcttcatgaagtctgccttgacaaa 401
Query: 953 atcacatgttccactaattcctgctaaacggttgagctcctttcccctggttatctggta 1012
|||||| |||||||||| |||| | | || || |||||||||||||| |||||||||||
Sbjct: 400 atcacaagttccactaagtcctacagaccgattaagctcctttcccctagttatctggta 341
Query: 1013 ttcgttgttattcaatccggtaactgaagttgagctaaatcttgcaatttctctcagtgg 1072
|||||||| |||||||| |||||||| || ||||||||||| ||||||||||| | ||
Sbjct: 340 gtcgttgttgttcaatccagtaactgaggtggagctaaatctcgcaatttctcttaacgg 281
Query: 1073 tccacctattccacagcccacatctaaaaccttcattcctggtttcaaaccaagttgcag 1132
|| |||||||||||||| ||||| ||||||||||| ||||||||||| |||| || ||
Sbjct: 280 cccgcctattccacagccgacatccaaaaccttcatccctggtttcaactcaagctgtag 221
Query: 1133 ggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctgtg 1192
||| ||||| ||||| || || ||||| ||||| | ||| ||||||||| |||| |||||
Sbjct: 220 ggccagaaagtgctcgtgccgtttgatactttcccttaaagattctccactccacctgtg 161
Query: 1193 agcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatcatagta 1252
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 160 agcaaagtggaaggattcaccccagccatactcgtagaagctagtagcaagatcatagta 101
Query: 1253 tttattaaccatatcagtatagttggacttccttgcttcctccttccctccatagtatcc 1312
||||||||||||||| || |||||||| ||||| | |||||||||||||||||| |||||
Sbjct: 100 tttattaaccatatcggtgtagttggatttcctcgattcctccttccctccataatatcc 41
Query: 1313 atgatatttctcatactcatcgacggccgacttgactt 1350
|||||||||||||||||| ||||| ||||| |||||||
Sbjct: 40 atgatatttctcatactcgtcgaccgccgatttgactt 3
>gb|AL507698.1|AL507698 AL507698 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06J16V 5',
mRNA sequence
Length = 700
Score = 549 bits (277), Expect = e-154
Identities = 500/573 (87%), Gaps = 1/573 (0%)
Strand = Plus / Minus
Query: 840 atctccttgtagcaaccaactggatcaggtgcatgacatgttgcctcaatggcgtaaaca 899
|||||||| ||||| ||||| |||||||| || || ||||||||||||||||| ||||||
Sbjct: 673 atctccttatagcagccaaccggatcaggcgcgtggcatgttgcctcaatggcataaaca 614
Query: 900 gcatcaaaagtgttgtcatcgaacggcatcttcatgaagtccgccttgacaaaa-tcaca 958
|||||||||||||| ||| ||| ||||||||||||||||| |||||||||||| |||||
Sbjct: 613 gcatcaaaagtgttatcagagaatggcatcttcatgaagtctgccttgacaaaaatcaca 554
Query: 959 tgttccactaattcctgctaaacggttgagctcctttcccctggttatctggtattcgtt 1018
|||||||||| |||| | | || || |||||||||||||| ||||||||||| |||||
Sbjct: 553 agttccactaagtcctacagaccgattaagctcctttcccctagttatctggtagtcgtt 494
Query: 1019 gttattcaatccggtaactgaagttgagctaaatcttgcaatttctctcagtggtccacc 1078
||| |||||||| |||||||| || ||||||||||| ||||||||||| | || || ||
Sbjct: 493 gttgttcaatccagtaactgaggtggagctaaatctcgcaatttctcttaacggcccgcc 434
Query: 1079 tattccacagcccacatctaaaaccttcattcctggtttcaaaccaagttgcagggcaag 1138
|||||||||||| ||||| ||||||||||| ||||||||||| |||| || ||||| ||
Sbjct: 433 tattccacagccgacatccaaaaccttcatccctggtttcaactcaagctgtagggccag 374
Query: 1139 aaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctgtgagcaaa 1198
||| ||||| || || ||||| ||||| | ||| ||||||||| |||| |||||||||||
Sbjct: 373 aaagtgctcgtgccgtttgatactttcccttaaagattctccactccacctgtgagcaaa 314
Query: 1199 gtggaaggattcaccccaaccatactcatagaagctagtggcaagatcatagtatttatt 1258
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 313 gtggaaggattcaccccagccatactcgtagaagctagtagcaagatcatagtatttatt 254
Query: 1259 aaccatatcagtatagttggacttccttgcttcctccttccctccatagtatccatgata 1318
||||||||| || |||||||| ||||| | |||||||||||||||||| |||||||||||
Sbjct: 253 aaccatatcggtgtagttggatttcctcgattcctccttccctccataatatccatgata 194
Query: 1319 tttctcatactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggcc 1378
|||||||||||| ||||| ||||| ||||||| |||||| ||||||||| || |||||
Sbjct: 193 tttctcatactcgtcgaccgccgatttgacttgttccttgtcgatcttcccgccaaggcc 134
Query: 1379 agaagcaagatccagcgctcccgacttggacat 1411
|| || |||||||| |||||||||||||||||
Sbjct: 133 cgacgcgagatccagggctcccgacttggacat 101
>gb|CA028274.1|CA028274 HZ61I02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61I02
5-PRIME, mRNA sequence
Length = 678
Score = 549 bits (277), Expect = e-154
Identities = 487/557 (87%)
Strand = Plus / Minus
Query: 855 ccaactggatcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttg 914
||||| |||||||| || || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 677 ccaaccggatcaggcgcgtggcatgttgcctcaatggcataaacagcatcaaaagtgtta 618
Query: 915 tcatcgaacggcatcttcatgaagtccgccttgacaaaatcacatgttccactaattcct 974
||| ||| ||||||||||||||||| ||||||||||||||||| |||||||||| ||||
Sbjct: 617 tcagagaatggcatcttcatgaagtctgccttgacaaaatcacaagttccactaagtcct 558
Query: 975 gctaaacggttgagctcctttcccctggttatctggtattcgttgttattcaatccggta 1034
| | || || |||||||||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 557 acagaccgattaagctcctttcccctagttatctggtagtcgttgttgttcaatccagta 498
Query: 1035 actgaagttgagctaaatcttgcaatttctctcagtggtccacctattccacagcccaca 1094
||||| || ||||||||||| ||||||||||| | || || |||||||||||||| |||
Sbjct: 497 actgaggtggagctaaatctcgcaatttctcttaacggcccgcctattccacagccgaca 438
Query: 1095 tctaaaaccttcattcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgc 1154
|| ||||||||||| ||||||||||| |||| || ||||| ||||| ||||| || ||
Sbjct: 437 tccaaaaccttcatccctggtttcaactcaagctgtagggccagaaagtgctcgtgccgt 378
Query: 1155 ttgatgctttcacgtaaggattctccattccatctgtgagcaaagtggaaggattcaccc 1214
||||| ||||| | ||| ||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 377 ttgatactttcccttaaagattctccactccacctgtgagcaaagtggaaggattcaccc 318
Query: 1215 caaccatactcatagaagctagtggcaagatcatagtatttattaaccatatcagtatag 1274
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 317 cagccatactcgtagaagctagtagcaagatcatagtatttattaaccatatcggtgtag 258
Query: 1275 ttggacttccttgcttcctccttccctccatagtatccatgatatttctcatactcatcg 1334
||||| ||||| | |||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 257 ttggatttcctcgattcctccttccctccataatatccatgatatttctcatactcgtcg 198
Query: 1335 acggccgacttgacttccaccttgttgatcttccctccgaggccagaagcaagatccagc 1394
|| ||||| ||||||| |||||| ||||||||| || ||||| || || ||||||||
Sbjct: 197 accgccgatttgacttgttccttgtcgatcttcccgccaaggcccgacgcgagatccagg 138
Query: 1395 gctcccgacttggacat 1411
|||||||||||||||||
Sbjct: 137 gctcccgacttggacat 121
>gb|CK122610.1|CK122610 BES1824104j23 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J234 5-PRIME, mRNA sequence
Length = 730
Score = 519 bits (262), Expect = e-146
Identities = 469/537 (87%), Gaps = 1/537 (0%)
Strand = Plus / Minus
Query: 876 catgttgcctcaatggcgtaaacagcatcaaaa-gtgttgtcatcgaacggcatcttcat 934
||||||||||||||||| ||| ||||||||||| ||||| ||| ||| |||||||||||
Sbjct: 654 catgttgcctcaatggcataancagcatcaaaaagtgttatcagagaatggcatcttcat 595
Query: 935 gaagtccgccttgacaaaatcacatgttccactaattcctgctaaacggttgagctcctt 994
|||||| ||||||||||||||||| |||||||||| |||| | | || || ||||||||
Sbjct: 594 gaagtctgccttgacaaaatcacaagttccactaagtcctacagaccgattaagctcctt 535
Query: 995 tcccctggttatctggtattcgttgttattcaatccggtaactgaagttgagctaaatct 1054
|||||| ||||||||||| |||||||| |||||||| |||||||| || |||||||||||
Sbjct: 534 tcccctagttatctggtagtcgttgttgttcaatccagtaactgaggtggagctaaatct 475
Query: 1055 tgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcattcctgg 1114
||||||||||| | || || |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 474 cgcaatttctcttaacggcccgcctattccacagccgacatccaaaaccttcatccctgg 415
Query: 1115 tttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaagga 1174
|||||| |||| || ||||| ||||| ||||| || || ||||| ||||| | ||| ||
Sbjct: 414 tttcaactcaagctgtagggccagaaagtgctcgtgccgtttgatactttcccttaaaga 355
Query: 1175 ttctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatagaagct 1234
||||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 354 ttctccactccacctgtgagcaaagtggaaggattcaccccagccatactcgtagaagct 295
Query: 1235 agtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgcttcctc 1294
||| ||||||||||||||||||||||||||||| || |||||||| ||||| | ||||||
Sbjct: 294 agtagcaagatcatagtatttattaaccatatcggtgtagttggatttcctcgattcctc 235
Query: 1295 cttccctccatagtatccatgatatttctcatactcatcgacggccgacttgacttccac 1354
|||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||| |
Sbjct: 234 cttccctccataatatccatgatatttctcatactcgtcgaccgccgatttgacttgttc 175
Query: 1355 cttgttgatcttccctccgaggccagaagcaagatccagcgctcccgacttggacat 1411
||||| ||||||||| || ||||| || || |||||||| |||||||||||||||||
Sbjct: 174 cttgtcgatcttcccgccaaggcccgacgcgagatccagggctcccgacttggacat 118
>gb|BU975772.1|BU975772 HB32E04r BC Hordeum vulgare subsp. vulgare cDNA clone HB32E04
5-PRIME, mRNA sequence
Length = 521
Score = 480 bits (242), Expect = e-134
Identities = 440/506 (86%)
Strand = Plus / Minus
Query: 525 gccttgaccattgtgcgggtaatcatgcgtcccacagaggtcaaacggaagctactcagg 584
||||||||||| |||| ||||| || ||||||| | ||||| ||||| |||||||
Sbjct: 518 gccttgaccatattgcgagtaattattcgtcccatggtagtcaaccggaaactactcaat 459
Query: 585 gagaatcggcttggatccaagggcaagtaccaaggcaagggagaatcttcagcaagatcc 644
|| || || ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 458 gaaaaccgacttgggtccaagggcaagtaccaaggcaatggagaatcttcagcaagatcc 399
Query: 645 ttatcccaaacaacctcaaacccggcgtcttttactgcctggagacattgccgagtgctt 704
|||||||||| |||||||||||| || ||||| || || || |||||||||||||| |||
Sbjct: 398 ttatcccaaataacctcaaacccagcatctttaacagcttgaagacattgccgagtactt 339
Query: 705 ctgatatctggcaggccattgccaagctcaatttcatccttgatccttttgtgggttgca 764
||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||
Sbjct: 338 ctgatatctggcaggccgttaccaagctcaatttcatccttaatcctcttgtgggttgca 279
Query: 765 ttgttaggatcatagtgatccgtaatgcaccactcgtacacggcaaagcactggccaggc 824
||||| |||||||||||||| |||||||||||||| || || ||||| ||||| || ||
Sbjct: 278 ttgtttggatcatagtgatcggtaatgcaccactcatatacagcaaaacactgcccgggt 219
Query: 825 ttcaacacacgatatatctccttgtagcaaccaactggatcaggtgcatgacatgttgcc 884
|| || ||||| || |||||||| ||||| ||||| |||||||| || || |||||||||
Sbjct: 218 tttaatacacggtagatctccttatagcagccaaccggatcaggcgcgtggcatgttgcc 159
Query: 885 tcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggcatcttcatgaagtccgcc 944
|||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||| |||
Sbjct: 158 tcaatggcataaacagcatcaaaagtgttatcagagaatggcatcttcatgaagtctgcc 99
Query: 945 ttgacaaaatcacatgttccactaattcctgctaaacggttgagctcctttcccctggtt 1004
|||||||||||||| |||||||||| |||| | | || || |||||||||||||| |||
Sbjct: 98 ttgacaaaatcacaagttccactaagtcctacagaccgattaagctcctttcccctagtt 39
Query: 1005 atctggtattcgttgttattcaatcc 1030
|||||||| |||||||| ||||||||
Sbjct: 38 atctggtagtcgttgttgttcaatcc 13
>gb|BG300712.2|BG300712 HVSMEb0018B21f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0018B21f, mRNA sequence
Length = 601
Score = 478 bits (241), Expect = e-133
Identities = 426/488 (87%)
Strand = Plus / Minus
Query: 924 ggcatcttcatgaagtccgccttgacaaaatcacatgttccactaattcctgctaaacgg 983
||||||||||||||||| ||||||||| ||||||| |||||||||| |||| | | ||
Sbjct: 590 ggcatcttcatgaagtctgccttgacanaatcacaagttccactaagtcctacagaccga 531
Query: 984 ttgagctcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagtt 1043
|| |||||||||||||| ||||||||||| |||||||| |||||||| |||||||| ||
Sbjct: 530 ttaagctcctttcccctagttatctggtagtcgttgttgttcaatccagtaactgaggtg 471
Query: 1044 gagctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaacc 1103
||||||||||| ||||||||||| | || || |||||||||||||| ||||| ||||||
Sbjct: 470 gagctaaatctcgcaatttctcttaacggcccgcctattccacagccgacatccaaaacc 411
Query: 1104 ttcattcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctt 1163
||||| ||||||||||| |||| || ||||| ||||| ||||| || || ||||| |||
Sbjct: 410 ttcatccctggtttcaactcaagctgtagggccagaaagtgctcgtgccgtttgatactt 351
Query: 1164 tcacgtaaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatac 1223
|| | ||| ||||||||| |||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 350 tcccttaaagattctccactccacctgtgagcaaagtggaaggattcaccccagccatac 291
Query: 1224 tcatagaagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttc 1283
|| ||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||
Sbjct: 290 tcgtagaagctagtagcaagatcatagtatttattaaccatatcggtgtagttggatttc 231
Query: 1284 cttgcttcctccttccctccatagtatccatgatatttctcatactcatcgacggccgac 1343
|| | |||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct: 230 ctcgattcctccttccctccataatatccatgatatttctcatactcgtcgaccgccgat 171
Query: 1344 ttgacttccaccttgttgatcttccctccgaggccagaagcaagatccagcgctcccgac 1403
||||||| |||||| ||||||||| || ||||| || || |||||||| |||||||||
Sbjct: 170 ttgacttgttccttgtcgatcttcccgccaaggcccgacgcgagatccagggctcccgac 111
Query: 1404 ttggacat 1411
||||||||
Sbjct: 110 ttggacat 103
>gb|BU989178.1|BU989178 HF21A09r HF Hordeum vulgare subsp. vulgare cDNA clone HF21A09
5-PRIME, mRNA sequence
Length = 576
Score = 472 bits (238), Expect = e-131
Identities = 478/558 (85%)
Strand = Plus / Minus
Query: 375 gctcattccagaagaggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 434
||||||||| ||||||||||||||| | |||||||||||| || |||||||| ||||||
Sbjct: 568 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 509
Query: 435 tttccgccctctaccagcccttctgcagccttctccaggaaattagagaccctctcactg 494
|| || || || || || |||||||| |||||||| | |||| |||||||||||| |||
Sbjct: 508 ttgccaccttcgacaagaccttctgcggccttctctaagaaactagagaccctctggctg 449
Query: 495 ccctgcggagcaagaccaacgtactccagggccttgaccattgtgcgggtaatcatgcgt 554
|| | ||||| ||||||||||| |||| ||||||||||| |||| ||||| || |||
Sbjct: 448 ccttcaggagctagaccaacgtattccaatgccttgaccatattgcgagtaattattcgt 389
Query: 555 cccacagaggtcaaacggaagctactcagggagaatcggcttggatccaagggcaagtac 614
|||| | ||||| ||||| ||||||| || || || ||||| |||||||||||||||
Sbjct: 388 cccatggtagtcaaccggaaactactcaatgaaaaccgacttgggtccaagggcaagtac 329
Query: 615 caaggcaagggagaatcttcagcaagatccttatcccaaacaacctcaaacccggcgtct 674
|||||||| ||||||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct: 328 caaggcaatggagaatcttcagcaagatccttatcccaaataacctcaaacccagcatct 269
Query: 675 tttactgcctggagacattgccgagtgcttctgatatctggcaggccattgccaagctca 734
|| || || || |||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct: 268 ttaacagcttgaagacattgccgagtacttctgatatctggcaggccgttaccaagctca 209
Query: 735 atttcatccttgatccttttgtgggttgcattgttaggatcatagtgatccgtaatgcac 794
||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 208 atttcatccttaatcctcttgtgggttgcattgtttggatcatagtgatcggtaatgcac 149
Query: 795 cactcgtacacggcaaagcactggccaggcttcaacacacgatatatctccttgtagcaa 854
||||| || || ||||| ||||| || || || || ||||| || |||||||| |||||
Sbjct: 148 cactcatatacagcaaaacactgcccgggttttaatacacggtagatctccttatagcag 89
Query: 855 ccaactggatcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttg 914
||||| |||||||| || || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 88 ccaaccggatcaggcgcgtggcatgttgcctcaatggcataaacagcatcaaaagtgtta 29
Query: 915 tcatcgaacggcatcttc 932
||| ||| |||||||||
Sbjct: 28 tcagagaatggcatcttc 11
>gb|BU971669.1|BU971669 HB19E23r BC Hordeum vulgare subsp. vulgare cDNA clone HB19E23
5-PRIME, mRNA sequence
Length = 520
Score = 460 bits (232), Expect = e-128
Identities = 433/500 (86%)
Strand = Plus / Minus
Query: 501 ggagcaagaccaacgtactccagggccttgaccattgtgcgggtaatcatgcgtcccaca 560
||||| ||||||||||| |||| ||||||||||| |||| ||||| || |||||||
Sbjct: 507 ggagctagaccaacgtattccaatgccttgaccatattgcgagtaattattcgtcccatg 448
Query: 561 gaggtcaaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggc 620
| ||||| ||||| ||||||| || || || ||||| |||||||||||||||||||||
Sbjct: 447 gtagtcaaccggaaactactcaatgaaaaccgacttgggtccaagggcaagtaccaaggc 388
Query: 621 aagggagaatcttcagcaagatccttatcccaaacaacctcaaacccggcgtcttttact 680
|| ||||||||||||||||||||||||||||||| |||||||||||| || ||||| ||
Sbjct: 387 aatggagaatcttcagcaagatccttatcccaaataacctcaaacccagcatctttaaca 328
Query: 681 gcctggagacattgccgagtgcttctgatatctggcaggccattgccaagctcaatttca 740
|| || |||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct: 327 gcttgaagacattgccgagtacttctgatatctggcaggccgttaccaagctcaatttca 268
Query: 741 tccttgatccttttgtgggttgcattgttaggatcatagtgatccgtaatgcaccactcg 800
||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 267 tccttaatcctcttgtgggttgcattgtttggatcatagtgatcggtaatgcaccactca 208
Query: 801 tacacggcaaagcactggccaggcttcaacacacgatatatctccttgtagcaaccaact 860
|| || ||||| ||||| || || || || ||||| || |||||||| ||||| |||||
Sbjct: 207 tatacagcaaaacactgcccgggttttaatacacggtagatctccttatagcagccaacc 148
Query: 861 ggatcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcg 920
|||||||| || || ||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct: 147 ggatcaggcgcgtggcatgttgcctcaatggcataaacagcatcaaaagtgttatcagag 88
Query: 921 aacggcatcttcatgaagtccgccttgacaaaatcacatgttccactaattcctgctaaa 980
|| ||||||||||||||||| ||||||||||||||||| |||||||||| |||| | |
Sbjct: 87 aatggcatcttcatgaagtctgccttgacaaaatcacaagttccactaagtcctacagac 28
Query: 981 cggttgagctcctttcccct 1000
|| || ||||||||||||||
Sbjct: 27 cgattaagctcctttcccct 8
>gb|AV932284.1|AV932284 AV932284 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2p18 5', mRNA sequence
Length = 469
Score = 434 bits (219), Expect = e-120
Identities = 399/459 (86%)
Strand = Plus / Minus
Query: 953 atcacatgttccactaattcctgctaaacggttgagctcctttcccctggttatctggta 1012
|||||| |||||||||| |||| | | || || |||||||||||||| |||||||||||
Sbjct: 469 atcacaagttccactaagtcctacagaccgattaagctcctttcccctagttatctggta 410
Query: 1013 ttcgttgttattcaatccggtaactgaagttgagctaaatcttgcaatttctctcagtgg 1072
|||||||| |||||||| |||||||| || ||||||||||| ||||||||||| | ||
Sbjct: 409 gtcgttgttgttcaatccagtaactgaggtggagctaaatctcgcaatttctcttaacgg 350
Query: 1073 tccacctattccacagcccacatctaaaaccttcattcctggtttcaaaccaagttgcag 1132
|| |||||||||||||| ||||| ||||||||||| ||||||||||| |||| || ||
Sbjct: 349 cccgcctattccacagccgacatccaaaaccttcatccctggtttcaactcaagctgtag 290
Query: 1133 ggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctgtg 1192
||| ||||| ||||| || || ||||| ||||| | ||| ||||||||| |||| |||||
Sbjct: 289 ggccagaaagtgctcgtgccgtttgatactttcccttaaagattctccactccacctgtg 230
Query: 1193 agcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatcatagta 1252
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 229 agcaaagtggaaggattcaccccagccatactcgtagaagctagtagcaagatcatagta 170
Query: 1253 tttattaaccatatcagtatagttggacttccttgcttcctccttccctccatagtatcc 1312
||||||||||||||| || |||||||| ||||| | |||||||||||||||||| |||||
Sbjct: 169 tttattaaccatatcggtgtagttggatttcctcgattcctccttccctccataatatcc 110
Query: 1313 atgatatttctcatactcatcgacggccgacttgacttccaccttgttgatcttccctcc 1372
|||||||||||||||||| ||||| ||||| ||||||| |||||| ||||||||| ||
Sbjct: 109 atgatatttctcatactcgtcgaccgccgatttgacttgttccttgtcgatcttcccgcc 50
Query: 1373 gaggccagaagcaagatccagcgctcccgacttggacat 1411
||||| || || |||||||| |||||||||||||||||
Sbjct: 49 aaggcccgacgcgagatccagggctcccgacttggacat 11
>gb|BU984788.1|BU984788 HF05A10r HF Hordeum vulgare subsp. vulgare cDNA clone HF05A10
5-PRIME, mRNA sequence
Length = 567
Score = 430 bits (217), Expect = e-119
Identities = 373/425 (87%)
Strand = Plus / Minus
Query: 987 agctcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgag 1046
|||||||||||||| ||||||||||| |||||||| |||||||| |||||||| || |||
Sbjct: 535 agctcctttcccctagttatctggtagtcgttgttgttcaatccagtaactgaggtggag 476
Query: 1047 ctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttc 1106
|||||||| ||||||||||| | || || |||||||||||||| ||||| |||||||||
Sbjct: 475 ctaaatctcgcaatttctcttaacggcccgcctattccacagccgacatccaaaaccttc 416
Query: 1107 attcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttca 1166
|| ||||||||||| |||| || ||||| ||||| ||||| || || ||||| |||||
Sbjct: 415 atccctggtttcaactcaagctgtagggccagaaagtgctcgtgccgtttgatactttcc 356
Query: 1167 cgtaaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactca 1226
| ||| ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 355 cttaaagattctccactccacctgtgagcaaagtggaaggattcaccccagccatactcg 296
Query: 1227 tagaagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttcctt 1286
||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct: 295 tagaagctagtagcaagatcatagtatttattaaccatatcggtgtagttggatttcctc 236
Query: 1287 gcttcctccttccctccatagtatccatgatatttctcatactcatcgacggccgacttg 1346
| |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 235 gattcctccttccctccataatatccatgatatttctcatactcgtcgaccgccgatttg 176
Query: 1347 acttccaccttgttgatcttccctccgaggccagaagcaagatccagcgctcccgacttg 1406
|||| |||||| ||||||||| || ||||| || || |||||||| ||||||||||||
Sbjct: 175 acttgttccttgtcgatcttcccgccaaggcccgacgcgagatccagggctcccgacttg 116
Query: 1407 gacat 1411
|||||
Sbjct: 115 gacat 111
>gb|CA012169.1|CA012169 HT04K11r HT Hordeum vulgare subsp. vulgare cDNA clone HT04K11
5-PRIME, mRNA sequence
Length = 507
Score = 430 bits (217), Expect = e-119
Identities = 373/425 (87%)
Strand = Plus / Minus
Query: 987 agctcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgag 1046
|||||||||||||| ||||||||||| |||||||| |||||||| |||||||| || |||
Sbjct: 475 agctcctttcccctagttatctggtagtcgttgttgttcaatccagtaactgaggtggag 416
Query: 1047 ctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttc 1106
|||||||| ||||||||||| | || || |||||||||||||| ||||| |||||||||
Sbjct: 415 ctaaatctcgcaatttctcttaacggcccgcctattccacagccgacatccaaaaccttc 356
Query: 1107 attcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttca 1166
|| ||||||||||| |||| || ||||| ||||| ||||| || || ||||| |||||
Sbjct: 355 atccctggtttcaactcaagctgtagggccagaaagtgctcgtgccgtttgatactttcc 296
Query: 1167 cgtaaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactca 1226
| ||| ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 295 cttaaagattctccactccacctgtgagcaaagtggaaggattcaccccagccatactcg 236
Query: 1227 tagaagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttcctt 1286
||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct: 235 tagaagctagtagcaagatcatagtatttattaaccatatcggtgtagttggatttcctc 176
Query: 1287 gcttcctccttccctccatagtatccatgatatttctcatactcatcgacggccgacttg 1346
| |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 175 gattcctccttccctccataatatccatgatatttctcatactcgtcgaccgccgatttg 116
Query: 1347 acttccaccttgttgatcttccctccgaggccagaagcaagatccagcgctcccgacttg 1406
|||| |||||| ||||||||| || ||||| || || |||||||| ||||||||||||
Sbjct: 115 acttgttccttgtcgatcttcccgccaaggcccgacgcgagatccagggctcccgacttg 56
Query: 1407 gacat 1411
|||||
Sbjct: 55 gacat 51
>gb|BQ472834.1|BQ472834 HB01F10r BC Hordeum vulgare subsp. vulgare cDNA clone HB01F10
5-PRIME, mRNA sequence
Length = 404
Score = 396 bits (200), Expect = e-109
Identities = 335/380 (88%)
Strand = Plus / Minus
Query: 687 agacattgccgagtgcttctgatatctggcaggccattgccaagctcaatttcatccttg 746
|||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 387 agacattgccgagtacttctgatatctggcaggccgttaccaagctcaatttcatcctta 328
Query: 747 atccttttgtgggttgcattgttaggatcatagtgatccgtaatgcaccactcgtacacg 806
||||| ||||||||||||||||| |||||||||||||| |||||||||||||| || ||
Sbjct: 327 atcctcttgtgggttgcattgtttggatcatagtgatcggtaatgcaccactcatataca 268
Query: 807 gcaaagcactggccaggcttcaacacacgatatatctccttgtagcaaccaactggatca 866
||||| ||||| || || || || ||||| || |||||||| ||||| ||||| ||||||
Sbjct: 267 gcaaaacactgcccgggttttaatacacggtagatctccttatagcagccaaccggatca 208
Query: 867 ggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggc 926
|| || || ||||||||||||||||| |||||||||||||||||||| ||| ||| |||
Sbjct: 207 ggcgcgtggcatgttgcctcaatggcataaacagcatcaaaagtgttatcagagaatggc 148
Query: 927 atcttcatgaagtccgccttgacaaaatcacatgttccactaattcctgctaaacggttg 986
|||||||||||||| ||||||||||||||||| |||||||||| |||| | | || ||
Sbjct: 147 atcttcatgaagtctgccttgacaaaatcacaagttccactaagtcctacagaccgatta 88
Query: 987 agctcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgag 1046
|||||||||||||| ||||||||||| |||||||| |||||||| |||||||| || |||
Sbjct: 87 agctcctttcccctagttatctggtagtcgttgttgttcaatccagtaactgaggtggag 28
Query: 1047 ctaaatcttgcaatttctct 1066
|||||||| |||||||||||
Sbjct: 27 ctaaatctcgcaatttctct 8
>gb|BU987084.1|BU987084 HF13M04r HF Hordeum vulgare subsp. vulgare cDNA clone HF13M04
5-PRIME, mRNA sequence
Length = 579
Score = 394 bits (199), Expect = e-108
Identities = 409/479 (85%)
Strand = Plus / Minus
Query: 375 gctcattccagaagaggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 434
||||||||| ||||||||||||||| | |||||||||||| || |||||||| ||||||
Sbjct: 482 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 423
Query: 435 tttccgccctctaccagcccttctgcagccttctccaggaaattagagaccctctcactg 494
|| || || || || || |||||||| |||||||| | |||| |||||||||||| |||
Sbjct: 422 ttgccaccttcgacaagaccttctgcggccttctctaagaaactagagaccctctggctg 363
Query: 495 ccctgcggagcaagaccaacgtactccagggccttgaccattgtgcgggtaatcatgcgt 554
|| | ||||| ||||||||||| |||| ||||||||||| |||| ||||| || |||
Sbjct: 362 ccttcaggagctagaccaacgtattccaatgccttgaccatattgcgagtaattattcgt 303
Query: 555 cccacagaggtcaaacggaagctactcagggagaatcggcttggatccaagggcaagtac 614
|||| | ||||| ||||| ||||||| || || || ||||| |||||||||||||||
Sbjct: 302 cccatggtagtcaaccggaaactactcaatgaaaaccgacttgggtccaagggcaagtac 243
Query: 615 caaggcaagggagaatcttcagcaagatccttatcccaaacaacctcaaacccggcgtct 674
|||||||| ||||||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct: 242 caaggcaatggagaatcttcagcaagatccttatcccaaataacctcaaacccagcatct 183
Query: 675 tttactgcctggagacattgccgagtgcttctgatatctggcaggccattgccaagctca 734
|| || || || |||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct: 182 ttaacagcttgaagacattgccgagtacttctgatatctggcaggccgttaccaagctca 123
Query: 735 atttcatccttgatccttttgtgggttgcattgttaggatcatagtgatccgtaatgcac 794
||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 122 atttcatccttaatcctcttgtgggttgcattgtttggatcatagtgatcggtaatgcac 63
Query: 795 cactcgtacacggcaaagcactggccaggcttcaacacacgatatatctccttgtagca 853
||||| || || ||||| ||||| || || || || ||||| || |||||||| |||||
Sbjct: 62 cactcatatacagcaaaacactgcccgggttttaatacacggtagatctccttatagca 4
>gb|BE215659.3|BE215659 HV_CEb0007L14f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0007L14f, mRNA sequence
Length = 523
Score = 392 bits (198), Expect = e-107
Identities = 371/426 (87%), Gaps = 2/426 (0%)
Strand = Plus / Minus
Query: 987 agctcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgag 1046
|||||||||||||| ||||| ||||| |||||||| |||||||| |||||||| || |||
Sbjct: 515 agctcctttcccctagttatttggtagtcgttgttgttcaatccagtaactgaggtggag 456
Query: 1047 ctaaatcttgcaat-ttctctcagtggtccacctattccacagcccacatctaaaacctt 1105
|||| ||| ||||| |||||| | || || |||||||||||||| ||||| ||||||||
Sbjct: 455 ctaa-tctcgcaatnttctcttaacggcccgcctattccacagccgacatccaaaacctt 397
Query: 1106 cattcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttc 1165
||| ||||||||||| |||| || ||||| ||||| ||||| || || ||||| |||||
Sbjct: 396 catccctggtttcaactcaagctgtagggccagaaagtgctcgtgccgtttgatactttc 337
Query: 1166 acgtaaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactc 1225
| ||| ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 336 ccttaaagattctccactccacctgtgagcaaagtggaaggattcaccccagccatactc 277
Query: 1226 atagaagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttcct 1285
||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct: 276 gtagaagctagtagcaagatcatagtatttattaaccatatcggtgtagttggatttcct 217
Query: 1286 tgcttcctccttccctccatagtatccatgatatttctcatactcatcgacggccgactt 1345
| |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 216 cgattcctccttccctccataatatccatgatatttctcatactcgtcgaccgccgattt 157
Query: 1346 gacttccaccttgttgatcttccctccgaggccagaagcaagatccagcgctcccgactt 1405
||||| |||||| ||||||||| || ||||| || || |||||||| |||||||||||
Sbjct: 156 gacttgttccttgtcgatcttcccgccaaggcccgacgcgagatccagggctcccgactt 97
Query: 1406 ggacat 1411
||||||
Sbjct: 96 ggacat 91
>gb|CA028533.1|CA028533 HZ62F08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ62F08
5-PRIME, mRNA sequence
Length = 344
Score = 341 bits (172), Expect = 4e-092
Identities = 301/344 (87%)
Strand = Plus / Minus
Query: 705 ctgatatctggcaggccattgccaagctcaatttcatccttgatccttttgtgggttgca 764
||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||
Sbjct: 344 ctgatatctggcaggccgttaccaagctcaatttcatccttaatcctcttgtgggttgca 285
Query: 765 ttgttaggatcatagtgatccgtaatgcaccactcgtacacggcaaagcactggccaggc 824
||||| |||||||||||||| |||||||||||||| || || ||||| ||||| || ||
Sbjct: 284 ttgtttggatcatagtgatcggtaatgcaccactcatatacagcaaaacactgcccgggt 225
Query: 825 ttcaacacacgatatatctccttgtagcaaccaactggatcaggtgcatgacatgttgcc 884
|| || ||||| || |||||||| ||||| ||||| |||||||| || || |||||||||
Sbjct: 224 tttaatacacggtagatctccttatagcagccaaccggatcaggcgcgtggcatgttgcc 165
Query: 885 tcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggcatcttcatgaagtccgcc 944
|||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||| |||
Sbjct: 164 tcaatggcataaacagcatcaaaagtgttatcagagaatggcatcttcatgaagtctgcc 105
Query: 945 ttgacaaaatcacatgttccactaattcctgctaaacggttgagctcctttcccctggtt 1004
|||||||||||||| |||||||||| |||| | | || || |||||||||||||| |||
Sbjct: 104 ttgacaaaatcacaagttccactaagtcctacagaccgattaagctcctttcccctagtt 45
Query: 1005 atctggtattcgttgttattcaatccggtaactgaagttgagct 1048
|||||||| |||||||| |||||||| |||||||| || |||||
Sbjct: 44 atctggtagtcgttgttgttcaatccagtaactgaggtggagct 1
>gb|BQ468511.1|BQ468511 HM01H13T HM Hordeum vulgare subsp. vulgare cDNA clone HM01H13
5-PRIME, mRNA sequence
Length = 525
Score = 339 bits (171), Expect = 2e-091
Identities = 294/335 (87%)
Strand = Plus / Minus
Query: 1077 cctattccacagcccacatctaaaaccttcattcctggtttcaaaccaagttgcagggca 1136
|||||||| ||||| ||||| ||||||||||| ||||||||||| |||| || |||||
Sbjct: 519 cctattccgcagccgacatccaaaaccttcatccctggtttcaactcaagctgtagggcc 460
Query: 1137 agaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctgtgagca 1196
||||| ||||| || || ||||| ||||| | ||| ||||||||| |||| |||||||||
Sbjct: 459 agaaagtgctcgtgccgtttgatactttcccttaaagattctccactccacctgtgagca 400
Query: 1197 aagtggaaggattcaccccaaccatactcatagaagctagtggcaagatcatagtattta 1256
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 399 aagtggaaggattcaccccagccatactcgtagaagctagtagcaagatcatagtattta 340
Query: 1257 ttaaccatatcagtatagttggacttccttgcttcctccttccctccatagtatccatga 1316
||||||||||| || |||||||| ||||| | |||||||||||||||||| |||||||||
Sbjct: 339 ttaaccatatcggtgtagttggatttcctcgattcctccttccctccataatatccatga 280
Query: 1317 tatttctcatactcatcgacggccgacttgacttccaccttgttgatcttccctccgagg 1376
|||||||||||||| ||||| ||||| ||||||| |||||| ||||||||| || |||
Sbjct: 279 tatttctcatactcgtcgaccgccgatttgacttgttccttgtcgatcttcccgccaagg 220
Query: 1377 ccagaagcaagatccagcgctcccgacttggacat 1411
|| || || |||||||| |||||||||||||||||
Sbjct: 219 cccgacgcgagatccagggctcccgacttggacat 185
>gb|BU974041.1|BU974041 HB26L16r BC Hordeum vulgare subsp. vulgare cDNA clone HB26L16
5-PRIME, mRNA sequence
Length = 318
Score = 309 bits (156), Expect = 2e-082
Identities = 255/288 (88%)
Strand = Plus / Minus
Query: 687 agacattgccgagtgcttctgatatctggcaggccattgccaagctcaatttcatccttg 746
|||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 298 agacattgccgagtacttctgatatctggcaggccgttaccaagctcaatttcatcctta 239
Query: 747 atccttttgtgggttgcattgttaggatcatagtgatccgtaatgcaccactcgtacacg 806
||||| ||||||||||||||||| |||||||||||||| |||||||||||||| || ||
Sbjct: 238 atcctcttgtgggttgcattgtttggatcatagtgatcggtaatgcaccactcatataca 179
Query: 807 gcaaagcactggccaggcttcaacacacgatatatctccttgtagcaaccaactggatca 866
||||| ||||| || || || || ||||| || |||||||| ||||| ||||| ||||||
Sbjct: 178 gcaaaacactgcccgggttttaatacacggtagatctccttatagcagccaaccggatca 119
Query: 867 ggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggc 926
|| || || ||||||||||||||||| |||||||||||||||||||| ||| ||| |||
Sbjct: 118 ggcgcgtggcatgttgcctcaatggcataaacagcatcaaaagtgttatcagagaatggc 59
Query: 927 atcttcatgaagtccgccttgacaaaatcacatgttccactaattcct 974
|||||||||||||| ||||||||||||||||| |||||| ||| ||||
Sbjct: 58 atcttcatgaagtctgccttgacaaaatcacaagttccagtaagtcct 11
>gb|BQ756038.1|BQ756038 EBem05_SQ001_G05_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ001_G05 5', mRNA sequence
Length = 406
Score = 293 bits (148), Expect = 9e-078
Identities = 262/300 (87%)
Strand = Plus / Minus
Query: 1112 tggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaa 1171
||||||||| |||| || ||||| ||||| ||||| || || ||||| ||||| | |||
Sbjct: 406 tggtttcaactcaagctgtagggccagaaagtgctcgtgccgtttgatactttcccttaa 347
Query: 1172 ggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatagaa 1231
||||||||| |||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 346 agattctccactccacctgtgagcaaagtggaaggattcaccccagccatactcgtagaa 287
Query: 1232 gctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgcttc 1291
|||||| ||||||||||||||||||||| ||||||| || |||||||| ||||| | |||
Sbjct: 286 gctagtagcaagatcatagtatttattacccatatcggtgtagttggatttcctcgattc 227
Query: 1292 ctccttccctccatagtatccatgatatttctcatactcatcgacggccgacttgacttc 1351
||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 226 ctccttccctccataatatccatgatatttctcatactcgtcgaccgccgatttgacttg 167
Query: 1352 caccttgttgatcttccctccgaggccagaagcaagatccagcgctcccgacttggacat 1411
|||||| ||||||||| || ||||| || || |||||||| |||||||||||||||||
Sbjct: 166 ttccttgtcgatcttcccgccaaggcccgacgcgagatccagggctcccgacttggacat 107
>gb|CA023543.1|CA023543 HZ46J08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46J08
5-PRIME, mRNA sequence
Length = 376
Score = 283 bits (143), Expect = 9e-075
Identities = 228/257 (88%)
Strand = Plus / Minus
Query: 1155 ttgatgctttcacgtaaggattctccattccatctgtgagcaaagtggaaggattcaccc 1214
||||| ||||| | ||| ||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 368 ttgatactttcccttaaagattctccactccacctgtgagcaaagtggaaggattcaccc 309
Query: 1215 caaccatactcatagaagctagtggcaagatcatagtatttattaaccatatcagtatag 1274
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 308 cagccatactcgtagaagctagtagcaagatcatagtatttattaaccatatcggtgtag 249
Query: 1275 ttggacttccttgcttcctccttccctccatagtatccatgatatttctcatactcatcg 1334
||||| ||| | | |||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 248 ttggatttcntngattcctccttccctccataatatccatgatatttctcatactcgtcg 189
Query: 1335 acggccgacttgacttccaccttgttgatcttccctccgaggccagaagcaagatccagc 1394
|| ||||| ||||||| |||||| ||||||||| || ||||| || || ||||||||
Sbjct: 188 accgccgatttgacttgttccttgtcgatcttcccgccaaggcccgacgcgagatccagg 129
Query: 1395 gctcccgacttggacat 1411
|||||||||||||||||
Sbjct: 128 gctcccgacttggacat 112
>gb|AV928811.1|AV928811 AV928811 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd15m08 3', mRNA sequence
Length = 683
Score = 266 bits (134), Expect = 2e-069
Identities = 290/342 (84%)
Strand = Plus / Plus
Query: 375 gctcattccagaagaggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 434
||||||||| ||||||||||||||| | |||||||||||| || |||||||| ||||||
Sbjct: 342 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 401
Query: 435 tttccgccctctaccagcccttctgcagccttctccaggaaattagagaccctctcactg 494
|| || || || || || |||||||| |||||||| | |||| |||||||||||| |||
Sbjct: 402 ttgccaccttcgacaagaccttctgcggccttctctaagaaactagagaccctctggctg 461
Query: 495 ccctgcggagcaagaccaacgtactccagggccttgaccattgtgcgggtaatcatgcgt 554
|| | ||||| ||||||||||| |||| ||||||||||| |||| ||||| || |||
Sbjct: 462 ccttcaggagctagaccaacgtattccaatgccttgaccatattgcgagtaattattcgt 521
Query: 555 cccacagaggtcaaacggaagctactcagggagaatcggcttggatccaagggcaagtac 614
|||| | ||||| ||||| ||||||| || || || ||||| |||||||||||||||
Sbjct: 522 cccatggtagtcaaccggaaactactcaatgaaaaccgacttgggtccaagggcaagtac 581
Query: 615 caaggcaagggagaatcttcagcaagatccttatcccaaacaacctcaaacccggcgtct 674
|||||||| ||||||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct: 582 caaggcaatggagaatcttcagcaagatccttatcccaaataacctcaaacccagcatct 641
Query: 675 tttactgcctggagacattgccgagtgcttctgatatctggc 716
|| || || || |||||||||||||| |||||||||||||||
Sbjct: 642 ttaacagcttgaagacattgccgagtacttctgatatctggc 683
>gb|AV917169.1|AV917169 AV917169 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8c03 5', mRNA sequence
Length = 503
Score = 262 bits (132), Expect = 3e-068
Identities = 228/260 (87%)
Strand = Plus / Minus
Query: 1047 ctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttc 1106
|||||||| ||||||||||| | || || |||||||||||||| ||||| |||||||||
Sbjct: 263 ctaaatctcgcaatttctcttaacggcccgcctattccacagccgacatccaaaaccttc 204
Query: 1107 attcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttca 1166
|| ||||||||||| |||| || ||||| ||||| ||||| || || ||||| |||||
Sbjct: 203 atccctggtttcaactcaagctgtagggccagaaagtgctcgtgccgtttgatactttcc 144
Query: 1167 cgtaaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactca 1226
| ||| ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 143 cttaaagattctccactccacctgtgagcaaagtggaaggattcaccccagccatactcg 84
Query: 1227 tagaagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttcctt 1286
||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct: 83 tagaagctagtagcaagatcatagtatttattaaccatatcggtgtagttggatttcctc 24
Query: 1287 gcttcctccttccctccata 1306
| ||||||||||||||||||
Sbjct: 23 gattcctccttccctccata 4
Score = 212 bits (107), Expect = 3e-053
Identities = 195/223 (87%), Gaps = 1/223 (0%)
Strand = Plus / Minus
Query: 753 ttgtgggttgcattgttaggatcatagtgatccgtaatgcaccactcgtacacggcaaag 812
||||||||||||||||| |||||||||||||| |||||||||||||| || || |||||
Sbjct: 503 ttgtgggttgcattgtttggatcatagtgatcggtaatgcaccactcatatacagcaaaa 444
Query: 813 cactggccaggcttcaacacacga-tatatctccttgtagcaaccaactggatcaggtgc 871
||||| || || || || ||||| || |||||||| ||||| ||||| |||||||| ||
Sbjct: 443 cactgcccgggttttaatacacgggtagatctccttatagcagccaaccggatcaggcgc 384
Query: 872 atgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaacggcatctt 931
|| ||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||
Sbjct: 383 gtggcatgttgcctcaatggcataaacagcatcaaaagtgttatcagagaatggcatctt 324
Query: 932 catgaagtccgccttgacaaaatcacatgttccactaattcct 974
||||||||| ||||||||||||||||| |||||||||| ||||
Sbjct: 323 catgaagtctgccttgacaaaatcacaagttccactaagtcct 281
>gb|AV919894.1|AV919894 AV919894 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8c03 3', mRNA sequence
Length = 640
Score = 210 bits (106), Expect = 1e-052
Identities = 248/294 (84%), Gaps = 1/294 (0%)
Strand = Plus / Plus
Query: 375 gctcattccagaagaggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 434
||||||||| ||||||||||||||| | |||||||||||| || |||||||| ||||||
Sbjct: 341 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 400
Query: 435 tttccgccctctaccagcccttctgcagccttctccaggaaattagagaccctctcactg 494
|| || || || || || |||||||| |||||||| | |||| |||||||||||| |||
Sbjct: 401 ttgccaccttcgacaagaccttctgcggccttctctaagaaactagagaccctctggctg 460
Query: 495 ccctgcggagcaagaccaacgtactccagggccttgaccattgtgcgggtaatcatgcgt 554
|| | ||||| ||||||||||| |||| ||||||||||| |||| ||||| || |||
Sbjct: 461 ccttcaggagctagaccaacgtattccaatgccttgaccatattgcgagtaattattcgt 520
Query: 555 cccacagaggtcaaacggaagctactcagggagaatcggcttggatccaagggcaagtac 614
|||| | ||||| ||||| ||||||| || || || ||||| |||||||||||||||
Sbjct: 521 cccatggtagtcaaccggaaactactcaatgaaaaccgacttgggtccaagggcaagtac 580
Query: 615 caaggcaagggagaatcttcagcaag-atccttatcccaaacaacctcaaaccc 667
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 581 caaggcaatggagaatcttcagcaagnatccttatcccaaataacctcaaaccc 634
>gb|AV926015.1|AV926015 AV926015 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basdm08 5', mRNA sequence
Length = 623
Score = 204 bits (103), Expect = 7e-051
Identities = 130/139 (93%)
Strand = Plus / Minus
Query: 1190 gtgagcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatcata 1249
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 623 gtgagcaaagtggaaggattcaccccagccatactcgtagaagctagtagcaagatcata 564
Query: 1250 gtatttattaaccatatcagtatagttggacttccttgcttcctccttccctccatagta 1309
|||||||||||||||||| || |||||||| ||||| | |||||||||||||||||| ||
Sbjct: 563 gtatttattaaccatatcggtgtagttggatttcctcgattcctccttccctccataata 504
Query: 1310 tccatgatatttctcatac 1328
|||||||||||||||||||
Sbjct: 503 tccatgatatttctcatac 485
>gb|AJ436543.1|AJ436543 AJ436543 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200004C11F1, mRNA sequence
Length = 341
Score = 145 bits (73), Expect = 5e-033
Identities = 220/269 (81%)
Strand = Plus / Minus
Query: 375 gctcattccagaagaggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 434
||||||||| ||||||||||||||| | |||||||||||| || |||||||| || |||
Sbjct: 273 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttctttc 214
Query: 435 tttccgccctctaccagcccttctgcagccttctccaggaaattagagaccctctcactg 494
|| || || || || || ||||| | ||||||| | |||| |||| ||||||| |||
Sbjct: 213 ttgccaccttcgacaagaccttccccgcccttctctaagaaactagataccctctggctg 154
Query: 495 ccctgcggagcaagaccaacgtactccagggccttgaccattgtgcgggtaatcatgcgt 554
|| | ||||| ||||||||||| |||| ||||||||||| |||| ||||| || |||
Sbjct: 153 ccttcaggagctagaccaacgtattccaatgccttgaccatattgcgagtaattattcgt 94
Query: 555 cccacagaggtcaaacggaagctactcagggagaatcggcttggatccaagggcaagtac 614
|||| | ||||| ||||| ||||||| || || || ||||| |||||||||||||||
Sbjct: 93 cccatggtagtcaaccggaaactactcaatgaaaaccgacttgggtccaagggcaagtac 34
Query: 615 caaggcaagggagaatcttcagcaagatc 643
|||||||| ||||||||||||||||||||
Sbjct: 33 caaggcaatggagaatcttcagcaagatc 5
>gb|BQ757070.1|BQ757070 EBem10_SQ002_L08_R embryo, 2 Day germination, no treatment, cv Optic,
EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ002_L08 5', mRNA sequence
Length = 242
Score = 103 bits (52), Expect = 2e-020
Identities = 109/128 (85%)
Strand = Plus / Minus
Query: 1077 cctattccacagcccacatctaaaaccttcattcctggtttcaaaccaagttgcagggca 1136
|||||||| ||||| ||||| ||||||||||| ||||||||||| |||| || |||||
Sbjct: 225 cctattccgcagccgacatccaaaaccttcatccctggtttcaactcaagctgtagggcc 166
Query: 1137 agaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctgtgagca 1196
||||| ||||| || || ||||| ||||| | ||| ||||||||| |||| |||||||||
Sbjct: 165 agaaagtgctcgtgccgtttgatactttcccttaaagattctccactccacctgtgagca 106
Query: 1197 aagtggaa 1204
||||||||
Sbjct: 105 aagtggaa 98
>gb|BE437615.1|BE437615 SFR005.F09F990624 ITEC SFR Barley Leaf Epidermis Library Hordeum
vulgare subsp. vulgare cDNA clone SF, mRNA sequence
Length = 469
Score = 81.8 bits (41), Expect = 7e-014
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 375 gctcattccagaagaggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 434
||||||||| ||||||||||||||| | |||||||||||| || |||||||| ||||||
Sbjct: 109 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 50
Query: 435 tttccgccctctaccagcccttctgcagccttctccaggaaattagaga 483
|| || || || || || |||||||| |||||||| | |||| ||||||
Sbjct: 49 ttgccaccttcgacaagaccttctgcggccttctctaagaaactagaga 1
>gb|BE437679.1|BE437679 SFR006.D02F990705 ITEC SFR Barley Leaf Epidermis Library Hordeum
vulgare subsp. vulgare cDNA clone SF, mRNA sequence
Length = 468
Score = 81.8 bits (41), Expect = 7e-014
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 375 gctcattccagaagaggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 434
||||||||| ||||||||||||||| | |||||||||||| || |||||||| ||||||
Sbjct: 109 gctcattccgaaagaggcttccgaaccacaaagaagtacatgggggtgaagatttccttc 50
Query: 435 tttccgccctctaccagcccttctgcagccttctccaggaaattagaga 483
|| || || || || || |||||||| |||||||| | |||| ||||||
Sbjct: 49 ttgccaccttcgacaagaccttctgcggccttctctaagaaactagaga 1
>gb|CA027539.1|CA027539 HZ59E02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ59E02
5-PRIME, mRNA sequence
Length = 183
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 1325 atactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagc 1384
|||||| ||||| ||||| ||||||| |||||| ||||||||| || ||||| || ||
Sbjct: 183 atactcgtcgaccgccgatttgacttgttccttgtcgatcttcccgccaaggcccgacgc 124
Query: 1385 aagatccagcgctcccgacttggacat 1411
|||||||| |||||||||||||||||
Sbjct: 123 gagatccagggctcccgacttggacat 97
>gb|BI960796.1|BI960796 HVSMEk0024C19f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0024C19f, mRNA sequence
Length = 474
Score = 67.9 bits (34), Expect = 1e-009
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 375 gctcattccagaagaggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 434
||||||||| ||||||||||||||| | |||||||||||| || |||||||| ||||||
Sbjct: 74 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 15
Query: 435 tt 436
||
Sbjct: 14 tt 13
>gb|BG418707.2|BG418707 HVSMEk0024A21f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0024A21f, mRNA sequence
Length = 476
Score = 67.9 bits (34), Expect = 1e-009
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 375 gctcattccagaagaggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 434
||||||||| ||||||||||||||| | |||||||||||| || |||||||| ||||||
Sbjct: 74 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 15
Query: 435 tt 436
||
Sbjct: 14 tt 13
>gb|BF253431.2|BF253431 HVSMEf0001G11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001G11f, mRNA sequence
Length = 899
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 375 gctcattccagaagaggcttccgaacaagaaagaagtacattggcgtgaagat 427
||||||||| ||||||||||||||| | |||||||||||| || ||||||||
Sbjct: 56 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagat 4
>gb|AL506893.1|AL506893 AL506893 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04I22T 5',
mRNA sequence
Length = 696
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 76 tgcttaaacatttctctttc 95
||||||||||||||||||||
Sbjct: 456 tgcttaaacatttctctttc 437
>gb|BM376038.2|BM376038 EBma01_SQ002_C15_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_C15 5', mRNA sequence
Length = 560
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 76 tgcttaaacatttctctttc 95
||||||||||||||||||||
Sbjct: 357 tgcttaaacatttctctttc 338
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 161,961
Number of Sequences: 312970
Number of extensions: 161961
Number of successful extensions: 49676
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49614
Number of HSP's gapped (non-prelim): 45
length of query: 1617
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1598
effective length of database: 169,188,109
effective search space: 270362598182
effective search space used: 270362598182
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)