BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405341.2.2
(1164 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV913572.1|AV913572 AV913572 K. Sato unpublished cDNA li... 547 e-154
gb|BU980696.1|BU980696 HA21G18r HA Hordeum vulgare subsp. v... 440 e-122
gb|BU980799.1|BU980799 HA21L17r HA Hordeum vulgare subsp. v... 440 e-122
gb|CA001134.1|CA001134 HS05H22u HS Hordeum vulgare subsp. v... 369 e-100
gb|CD663742.1|CD663742 UCRHV18_06ca04_b1 Drought-stressed D... 365 2e-099
gb|AV918875.1|AV918875 AV918875 K. Sato unpublished cDNA li... 359 1e-097
gb|BF258307.2|BF258307 HVSMEf0015G02f Hordeum vulgare seedl... 258 4e-067
gb|BM444145.1|BM444145 EBem09_SQ004_E19_R embryo, 1 Day ger... 167 1e-039
gb|BG414854.2|BG414854 HVSMEk0003P18f Hordeum vulgare testa... 50 2e-004
gb|BU989313.1|BU989313 HF21G08r HF Hordeum vulgare subsp. v... 46 0.003
gb|BU971659.1|BU971659 HB19E12r BC Hordeum vulgare subsp. v... 44 0.010
gb|AV916324.1|AV916324 AV916324 K. Sato unpublished cDNA li... 42 0.040
gb|AV930473.1|AV930473 AV930473 K. Sato unpublished cDNA li... 40 0.16
gb|AV931729.1|AV931729 AV931729 K. Sato unpublished cDNA li... 40 0.16
gb|BJ452203.1|BJ452203 BJ452203 K. Sato unpublished cDNA li... 40 0.16
gb|BQ661898.1|BQ661898 HP01M02w HP Hordeum vulgare subsp. v... 40 0.16
gb|BQ661900.1|BQ661900 HP01M04w HP Hordeum vulgare subsp. v... 40 0.16
gb|BU999237.1|BU999237 HI13N22r HI Hordeum vulgare subsp. v... 40 0.16
gb|CA024753.1|CA024753 HZ50D08r HZ Hordeum vulgare subsp. v... 40 0.16
gb|CB875733.1|CB875733 HX09D04w HX Hordeum vulgare subsp. v... 40 0.16
gb|CB879472.1|CB879472 HP02G07w HP Hordeum vulgare subsp. v... 40 0.16
>gb|AV913572.1|AV913572 AV913572 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i21 5', mRNA sequence
Length = 634
Score = 547 bits (276), Expect = e-154
Identities = 514/592 (86%), Gaps = 1/592 (0%)
Strand = Plus / Plus
Query: 93 aatggatgatggcaatgtccttgctttgaaaagaatagtgaaaacaaatgaagggtctag 152
|||||||||||||| || |||| |||||||| ||||||||||||||||||||| | |
Sbjct: 24 aatggatgatggcagcgtttttgcattgaaaaggatagtgaaaacaaatgaagggcgt-g 82
Query: 153 atcggttctttgatagagaacttgagatattgggaagtgttaaacatcgttacttggtca 212
|| |||||||||||||||||||||||||||||||||||||| || ||| | |||||||
Sbjct: 83 ataaattctttgatagagaacttgagatattgggaagtgttaagcaccgtaatttggtca 142
Query: 213 atcttcgtggttattgcaactctccttcatcaaaacttttgatatatgattatcttcaag 272
|||| ||||| |||||||| || |||||||||||||| ||||||||||| || |||| ||
Sbjct: 143 atctccgtggctattgcaattccccttcatcaaaactgttgatatatgactaccttccag 202
Query: 273 gtggaagcctggatgaagtgctgcatgaaaagtctgaacagttggattgggatgcacgta 332
|||| ||||||||||||||||| |||||||| ||||||||||||| ||||| ||||| |
Sbjct: 203 gtgggagcctggatgaagtgctacatgaaaaaactgaacagttggaatgggaggcacgaa 262
Query: 333 ttaacatcatacttggagctgcaaaaggcttgtcttacttgcatcacgattgttcgcctc 392
||||||| ||||||||||||||||||||| || ||||||||||||||||||| || ||||
Sbjct: 263 ttaacataatacttggagctgcaaaaggcctggcttacttgcatcacgattgctcacctc 322
Query: 393 gaataatacatcgtgatatcaagtcgagcaacatcttgcttgacggcagttttgaggccc 452
||||||||||||||||||| ||||||||||| ||||| || || |||| |||||| | |
Sbjct: 323 gaataatacatcgtgatattaagtcgagcaatatcttactcgatggcaattttgaatcac 382
Query: 453 gcgtatcagactttggacttgcaaagcttttagaggacgaagaatcccatatcactacaa 512
| ||||||||||| ||||| ||||| || ||||||| |||||||| |||||||||||||
Sbjct: 383 gtgtatcagacttcggactcgcaaaactactagaggatgaagaatctcatatcactacaa 442
Query: 513 tagttgcaggaacatttggttatcttgcgccagagtatatgcagtttggcagagccaccg 572
||||||||||||||||||| ||||||||||||||||| ||||| |||||| || ||||
Sbjct: 443 tagttgcaggaacatttggctatcttgcgccagagtacatgcaaagtggcagggctaccg 502
Query: 573 agaagaccgatgtctacagttttggggttctggtacttgaaatactcagcggaaagcgac 632
| ||||| || |||||||||||||| ||| ||||||| || ||||| || |||||||| |
Sbjct: 503 aaaagacggacgtctacagttttggagttttggtactggagatactgagtggaaagcggc 562
Query: 633 ctaccgatgcatccttcattgagaagggattaaacattgttggatggttaaa 684
||||||| || || ||||| |||||||| || |||||||| |||||| ||||
Sbjct: 563 ctaccgacgcgtcattcatcgagaaggggttgaacattgtgggatggctaaa 614
>gb|BU980696.1|BU980696 HA21G18r HA Hordeum vulgare subsp. vulgare cDNA clone HA21G18
5-PRIME, mRNA sequence
Length = 504
Score = 440 bits (222), Expect = e-122
Identities = 426/494 (86%)
Strand = Plus / Plus
Query: 397 aatacatcgtgatatcaagtcgagcaacatcttgcttgacggcagttttgaggcccgcgt 456
||||||||||||||| ||||||||||| ||||| || || |||| |||||| | || ||
Sbjct: 11 aatacatcgtgatattaagtcgagcaatatcttactcgatggcaattttgaatcacgtgt 70
Query: 457 atcagactttggacttgcaaagcttttagaggacgaagaatcccatatcactacaatagt 516
||||||||| ||||| ||||| || ||||||| |||||||| |||||||||||||||||
Sbjct: 71 atcagacttcggactcgcaaaactactagaggatgaagaatctcatatcactacaatagt 130
Query: 517 tgcaggaacatttggttatcttgcgccagagtatatgcagtttggcagagccaccgagaa 576
||||||||||||||| ||||||||||||||||| ||||| |||||| || ||||| ||
Sbjct: 131 tgcaggaacatttggctatcttgcgccagagtacatgcaaagtggcagggctaccgaaaa 190
Query: 577 gaccgatgtctacagttttggggttctggtacttgaaatactcagcggaaagcgacctac 636
||| || |||||||||||||| ||| ||||||| || ||||| || |||||||| |||||
Sbjct: 191 gacggacgtctacagttttggagttttggtactggagatactgagtggaaagcggcctac 250
Query: 637 cgatgcatccttcattgagaagggattaaacattgttggatggttaaattttctggctgg 696
||| || || ||||| |||||||| || |||||||| |||||| |||| || |||| ||
Sbjct: 251 cgacgcgtcattcatcgagaaggggttgaacattgtgggatggctaaacttcttggccgg 310
Query: 697 cgagaaccgggagagggaaatcgtcgatctgaattgtgaaggagtgcacaccgagacctt 756
|||| | | ||| |||| ||||| |||| | |||| || || ||||| | ||||||| |
Sbjct: 311 ggagagcagagagcgggagatcgtggatccggattgcgacggcgtgcagatcgagaccct 370
Query: 757 ggacgctctgctctctctcgccaagcagtgtgtcagctctttgccggaggagcggccgac 816
|||||| |||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 371 ggacgccctgctctctctcgccaagcaatgcgtgagctctttgccggaggagcggccgac 430
Query: 817 gatgcacagggtggtacagatgctggagtcggatgtaattacgccgtgccctagcgactt 876
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 431 gatgcacagggtggtacagatgctggagtcggatgtaattacgccgtgcggtagcgattt 490
Query: 877 ctacgattcagagt 890
||||||||||||||
Sbjct: 491 ctacgattcagagt 504
>gb|BU980799.1|BU980799 HA21L17r HA Hordeum vulgare subsp. vulgare cDNA clone HA21L17
5-PRIME, mRNA sequence
Length = 504
Score = 440 bits (222), Expect = e-122
Identities = 426/494 (86%)
Strand = Plus / Plus
Query: 397 aatacatcgtgatatcaagtcgagcaacatcttgcttgacggcagttttgaggcccgcgt 456
||||||||||||||| ||||||||||| ||||| || || |||| |||||| | || ||
Sbjct: 11 aatacatcgtgatattaagtcgagcaatatcttactcgatggcaattttgaatcacgtgt 70
Query: 457 atcagactttggacttgcaaagcttttagaggacgaagaatcccatatcactacaatagt 516
||||||||| ||||| ||||| || ||||||| |||||||| |||||||||||||||||
Sbjct: 71 atcagacttcggactcgcaaaactactagaggatgaagaatctcatatcactacaatagt 130
Query: 517 tgcaggaacatttggttatcttgcgccagagtatatgcagtttggcagagccaccgagaa 576
||||||||||||||| ||||||||||||||||| ||||| |||||| || ||||| ||
Sbjct: 131 tgcaggaacatttggctatcttgcgccagagtacatgcaaagtggcagggctaccgaaaa 190
Query: 577 gaccgatgtctacagttttggggttctggtacttgaaatactcagcggaaagcgacctac 636
||| || |||||||||||||| ||| ||||||| || ||||| || |||||||| |||||
Sbjct: 191 gacggacgtctacagttttggagttttggtactggagatactgagtggaaagcggcctac 250
Query: 637 cgatgcatccttcattgagaagggattaaacattgttggatggttaaattttctggctgg 696
||| || || ||||| |||||||| || |||||||| |||||| |||| || |||| ||
Sbjct: 251 cgacgcgtcattcatcgagaaggggttgaacattgtgggatggctaaacttcttggccgg 310
Query: 697 cgagaaccgggagagggaaatcgtcgatctgaattgtgaaggagtgcacaccgagacctt 756
|||| | | ||| |||| ||||| |||| | |||| || || ||||| | ||||||| |
Sbjct: 311 ggagagcagagagcgggagatcgtggatccggattgcgacggcgtgcagatcgagaccct 370
Query: 757 ggacgctctgctctctctcgccaagcagtgtgtcagctctttgccggaggagcggccgac 816
|||||| |||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 371 ggacgccctgctctctctcgccaagcaatgcgtgagctctttgccggaggagcggccgac 430
Query: 817 gatgcacagggtggtacagatgctggagtcggatgtaattacgccgtgccctagcgactt 876
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 431 gatgcacagggtggtacagatgctggagtcggatgtaattacgccgtgcggtagcgattt 490
Query: 877 ctacgattcagagt 890
||||||||||||||
Sbjct: 491 ctacgattcagagt 504
>gb|CA001134.1|CA001134 HS05H22u HS Hordeum vulgare subsp. vulgare cDNA clone HS05H22
3-PRIME, mRNA sequence
Length = 567
Score = 369 bits (186), Expect = e-100
Identities = 354/410 (86%)
Strand = Plus / Minus
Query: 483 tagaggacgaagaatcccatatcactacaatagttgcaggaacatttggttatcttgcgc 542
||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 554 tagaggatgaagaatctcatatcactacaatagttgcaggaacatttggctatcttgcgc 495
Query: 543 cagagtatatgcagtttggcagagccaccgagaagaccgatgtctacagttttggggttc 602
||||||| ||||| |||||| || ||||| ||||| || |||||||||||||| |||
Sbjct: 494 cagagtacatgcaaagtggcagggctaccgaaaagacggacgtctacagttttggagttt 435
Query: 603 tggtacttgaaatactcagcggaaagcgacctaccgatgcatccttcattgagaagggat 662
||||||| || ||||| || |||||||| |||||||| || || ||||| |||||||| |
Sbjct: 434 tggtactggagatactgagtggaaagcggcctaccgacgcgtcattcatcgagaaggggt 375
Query: 663 taaacattgttggatggttaaattttctggctggcgagaaccgggagagggaaatcgtcg 722
| |||||||| |||||| |||| || |||| || ||| | ||| |||| ||||| |
Sbjct: 374 tgaacattgtgggatggctaaacttcttggccgggaagagcaaagagcgggagatcgtgg 315
Query: 723 atctgaattgtgaaggagtgcacaccgagaccttggacgctctgctctctctcgccaagc 782
||| | |||| || || ||||| | ||||||| ||||||| |||||||||||||||||||
Sbjct: 314 atccggattgcgacggcgtgcagatcgagaccctggacgccctgctctctctcgccaagc 255
Query: 783 agtgtgtcagctctttgccggaggagcggccgacgatgcacagggtggtacagatgctgg 842
| || || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 254 aatgcgtgagctctttgccggaggagcggccgacaatgcacagggtggtacagatgctgg 195
Query: 843 agtcggatgtaattacgccgtgccctagcgacttctacgattcagagtag 892
||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 194 agtcggatgtaattacgccgtgcggtagcgatttctacgattcagagtag 145
Score = 40.1 bits (20), Expect = 0.16
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 934 gtggaggcgcattcc-tttattctttgcagat 964
|||||||| |||||| ||||||||||||||||
Sbjct: 73 gtggaggcacattccatttattctttgcagat 42
>gb|CD663742.1|CD663742 UCRHV18_06ca04_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06ca04, mRNA sequence
Length = 659
Score = 365 bits (184), Expect = 2e-099
Identities = 337/388 (86%)
Strand = Plus / Minus
Query: 505 cactacaatagttgcaggaacatttggttatcttgcgccagagtatatgcagtttggcag 564
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 651 cactacaatagttgcaggaacatttggctatcttgcgccagagtacatgcaaagtggcag 592
Query: 565 agccaccgagaagaccgatgtctacagttttggggttctggtacttgaaatactcagcgg 624
|| ||||| ||||| || |||||||||||||| ||| ||||||| || ||||| || ||
Sbjct: 591 ggctaccgaaaagacggacgtctacagttttggagttttggtactggagatactgagtgg 532
Query: 625 aaagcgacctaccgatgcatccttcattgagaagggattaaacattgttggatggttaaa 684
|||||| |||||||| || || ||||| |||||||| || |||||||| |||||| ||||
Sbjct: 531 aaagcggcctaccgacgcgtcattcatcgagaaggggttgaacattgtgggatggctaaa 472
Query: 685 ttttctggctggcgagaaccgggagagggaaatcgtcgatctgaattgtgaaggagtgca 744
|| |||| || |||| | | ||| |||| ||||| |||| | |||| || || |||||
Sbjct: 471 cttcttggccggggagagcagagagcgggagatcgtggatccggattgcgacggcgtgca 412
Query: 745 caccgagaccttggacgctctgctctctctcgccaagcagtgtgtcagctctttgccgga 804
| ||||||| ||||||| |||||||||||||||||||| || || ||||||||||||||
Sbjct: 411 gatcgagaccctggacgccctgctctctctcgccaagcaatgcgtgagctctttgccgga 352
Query: 805 ggagcggccgacgatgcacagggtggtacagatgctggagtcggatgtaattacgccgtg 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ggagcggccgacgatgcacagggtggtacagatgctggagtcggatgtaattacgccgtg 292
Query: 865 ccctagcgacttctacgattcagagtag 892
| |||||| ||||||||||||||||||
Sbjct: 291 cggtagcgatttctacgattcagagtag 264
Score = 40.1 bits (20), Expect = 0.16
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 934 gtggaggcgcattcc-tttattctttgcagat 964
|||||||| |||||| ||||||||||||||||
Sbjct: 192 gtggaggcacattccatttattctttgcagat 161
>gb|AV918875.1|AV918875 AV918875 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i21 3', mRNA sequence
Length = 629
Score = 359 bits (181), Expect = 1e-097
Identities = 354/409 (86%), Gaps = 2/409 (0%)
Strand = Plus / Minus
Query: 486 aggacgaagaatcccatatcactacaa-tagttgcaggaacatttggttatcttgcgcca 544
|||| |||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 629 aggatgaagaatctcatatcactacaaatagttgcaggaacatttggctatcttgcgcca 570
Query: 545 gagtatatgcagtttggcagagccaccgagaa-gaccgatgtctacagttttggggttct 603
||||| ||||| |||||| || ||||| || ||| || |||||||||||||| ||| |
Sbjct: 569 gagtacatgcaaagtggcagggctaccgaaaaagacggacgtctacagttttggagtttt 510
Query: 604 ggtacttgaaatactcagcggaaagcgacctaccgatgcatccttcattgagaagggatt 663
|||||| || ||||| || |||||||| |||||||| || || ||||| |||||||| ||
Sbjct: 509 ggtactggagatactgagtggaaagcggcctaccgacgcgtcattcatcgagaaggggtt 450
Query: 664 aaacattgttggatggttaaattttctggctggcgagaaccgggagagggaaatcgtcga 723
|||||||| |||||| |||| || |||| || |||| | | ||| |||| ||||| ||
Sbjct: 449 gaacattgtgggatggctaaacttcttggccggggagagcagagagcgggagatcgtgga 390
Query: 724 tctgaattgtgaaggagtgcacaccgagaccttggacgctctgctctctctcgccaagca 783
|| | |||| || || ||||| | ||||||| ||||||| ||||||||||||||||||||
Sbjct: 389 tccggattgcgacggcgtgcagatcgagaccctggacgccctgctctctctcgccaagca 330
Query: 784 gtgtgtcagctctttgccggaggagcggccgacgatgcacagggtggtacagatgctgga 843
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atgcgtgagctctttgccggaggagcggccgacgatgcacagggtggtacagatgctgga 270
Query: 844 gtcggatgtaattacgccgtgccctagcgacttctacgattcagagtag 892
|||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 269 gtcggatgtaattacgccgtgcggtagcgatttctacgattcagagtag 221
Score = 40.1 bits (20), Expect = 0.16
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 934 gtggaggcgcattcc-tttattctttgcagat 964
|||||||| |||||| ||||||||||||||||
Sbjct: 149 gtggaggcacattccatttattctttgcagat 118
>gb|BF258307.2|BF258307 HVSMEf0015G02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0015G02f, mRNA sequence
Length = 582
Score = 258 bits (130), Expect = 4e-067
Identities = 275/322 (85%), Gaps = 1/322 (0%)
Strand = Plus / Plus
Query: 8 caaaagacatactcaagaagctagagactatggatgaagaaaatatcattggagcaggag 67
|||||||||| || ||||| |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 260 caaaagacatccttaagaaactagagaccatggatgaggaaaatatcattggagcagggg 319
Query: 68 gcttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaaagaa 127
|||| || ||||| || ||||| |||||||||||||| || |||| |||||||| |
Sbjct: 320 gctttgggactgtgtacaaacttgcaatggatgatggcagcgtttttgcattgaaaagga 379
Query: 128 tagtgaaaacaaatgaagggtctagatcggttctttgatagagaacttgagatattggga 187
|||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct: 380 tagtgaaaacaaatgaagggcgt-gataaattctttgatagagaacttgagatattggga 438
Query: 188 agtgttaaacatcgttacttggtcaatcttcgtggttattgcaactctccttcatcaaaa 247
|||||||| || ||| | || |||||||| ||||| |||||||| || |||| |||||||
Sbjct: 439 agtgttaagcaccgtaattttgtcaatctccgtggctattgcaattcccctttatcaaaa 498
Query: 248 cttttgatatatgattatcttcaaggtggaagcctggatgaagtgctgcatgaaaagtct 307
|| |||||||||| || |||| | |||| ||||||||||||||||| |||||||| ||
Sbjct: 499 ctggtgatatatgactaccttccaagtgggagcctggatgaagtgctacatgaaaaaact 558
Query: 308 gaacagttggattgggatgcac 329
||||||||||| ||||| ||||
Sbjct: 559 gaacagttggaatgggaagcac 580
>gb|BM444145.1|BM444145 EBem09_SQ004_E19_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_E19 5', mRNA sequence
Length = 579
Score = 167 bits (84), Expect = 1e-039
Identities = 175/204 (85%), Gaps = 1/204 (0%)
Strand = Plus / Plus
Query: 40 gatgaagaaaatatcattggagcaggaggcttcggaactgtttataaactgcaaatggat 99
||||| |||||||||||||||||||| ||||| || ||||| || ||||| |||||||
Sbjct: 377 gatgaggaaaatatcattggagcagggggctttgggactgtgtacaaacttgcaatggat 436
Query: 100 gatggcaatgtccttgctttgaaaagaatagtgaaaacaaatgaagggtctagatcggtt 159
||||||| || |||| |||||||| ||||||||||||||||||||| | ||| ||
Sbjct: 437 gatggcagcgtttttgcattgaaaaggatagtgaaaacaaatgaagggcgt-gataaatt 495
Query: 160 ctttgatagagaacttgagatattgggaagtgttaaacatcgttacttggtcaatcttcg 219
|||||||||||||||||||||||||||||||||||| || ||| | ||||||||||| ||
Sbjct: 496 ctttgatagagaacttgagatattgggaagtgttaagcaccgtaatttggtcaatctccg 555
Query: 220 tggttattgcaactctccttcatc 243
||| |||||||| || ||||||||
Sbjct: 556 tggctattgcaattccccttcatc 579
>gb|BG414854.2|BG414854 HVSMEk0003P18f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0003P18f, mRNA sequence
Length = 802
Score = 50.1 bits (25), Expect = 2e-004
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 8 caaaagacatactcaagaagctagagactatggatgaagaaaatatca-ttggagcagga 66
||||| |||| || ||||| |||||||| ||||||| |||||||||| ||||||||||
Sbjct: 621 caaaaaacattcttaagaaactagagaccttggatgaggaaaatatcatttggagcaggg 680
Query: 67 ggctt 71
|||||
Sbjct: 681 ggctt 685
>gb|BU989313.1|BU989313 HF21G08r HF Hordeum vulgare subsp. vulgare cDNA clone HF21G08
5-PRIME, mRNA sequence
Length = 638
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 563 agagccaccgagaagaccgatgtctacagttttggggtt 601
|||||||| ||||||| |||||||||||| | |||||||
Sbjct: 207 agagccacagagaagagcgatgtctacagctatggggtt 245
>gb|BU971659.1|BU971659 HB19E12r BC Hordeum vulgare subsp. vulgare cDNA clone HB19E12
5-PRIME, mRNA sequence
Length = 578
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 411 tcaagtcgagcaacatcttgcttgac 436
||||||| ||||||||||||||||||
Sbjct: 101 tcaagtccagcaacatcttgcttgac 126
>gb|AV916324.1|AV916324 AV916324 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12k08 5', mRNA sequence
Length = 215
Score = 42.1 bits (21), Expect = 0.040
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 574 gaagaccgatgtctacagttttggggtt 601
||||| |||||||||||| |||||||||
Sbjct: 55 gaagagcgatgtctacagntttggggtt 82
>gb|AV930473.1|AV930473 AV930473 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22k21 3', mRNA sequence
Length = 650
Score = 40.1 bits (20), Expect = 0.16
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 574 gaagaccgatgtctacagttttggggtt 601
||||| |||||||||||| |||||||||
Sbjct: 637 gaagagcgatgtctacagctttggggtt 610
>gb|AV931729.1|AV931729 AV931729 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23p08 3', mRNA sequence
Length = 685
Score = 40.1 bits (20), Expect = 0.16
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 574 gaagaccgatgtctacagttttggggtt 601
||||| |||||||||||| |||||||||
Sbjct: 660 gaagagcgatgtctacagctttggggtt 633
>gb|BJ452203.1|BJ452203 BJ452203 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak38c11 5', mRNA sequence
Length = 721
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 347 ggagctgcaaaaggcttgtcttacttgcatca 378
|||| ||| ||||| |||||||||||||||||
Sbjct: 574 ggagttgccaaaggattgtcttacttgcatca 605
>gb|BQ661898.1|BQ661898 HP01M02w HP Hordeum vulgare subsp. vulgare cDNA clone HP01M02
3-PRIME, mRNA sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.16
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 809 cggccgacgatgcacagggtggtacagatgctggag 844
||||||||||||||| ||||| ||||||||||||
Sbjct: 227 cggccgacgatgcaccatgtggtgcagatgctggag 192
>gb|BQ661900.1|BQ661900 HP01M04w HP Hordeum vulgare subsp. vulgare cDNA clone HP01M04
3-PRIME, mRNA sequence
Length = 651
Score = 40.1 bits (20), Expect = 0.16
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 809 cggccgacgatgcacagggtggtacagatgctggag 844
||||||||||||||| ||||| ||||||||||||
Sbjct: 227 cggccgacgatgcaccatgtggtgcagatgctggag 192
>gb|BU999237.1|BU999237 HI13N22r HI Hordeum vulgare subsp. vulgare cDNA clone HI13N22
5-PRIME, mRNA sequence
Length = 634
Score = 40.1 bits (20), Expect = 0.16
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 574 gaagaccgatgtctacagttttggggtt 601
||||| |||||||||||| |||||||||
Sbjct: 245 gaagagcgatgtctacagctttggggtt 272
>gb|CA024753.1|CA024753 HZ50D08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50D08
5-PRIME, mRNA sequence
Length = 630
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 404 cgtgatatcaagtcgagcaacatcttgcttga 435
|||||||||||| | ||||||||||| |||||
Sbjct: 583 cgtgatatcaaggctagcaacatcttacttga 614
>gb|CB875733.1|CB875733 HX09D04w HX Hordeum vulgare subsp. vulgare cDNA clone HX09D04
3-PRIME, mRNA sequence
Length = 637
Score = 40.1 bits (20), Expect = 0.16
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 574 gaagaccgatgtctacagttttggggtt 601
||||| |||||||||||| |||||||||
Sbjct: 572 gaagagcgatgtctacagctttggggtt 545
>gb|CB879472.1|CB879472 HP02G07w HP Hordeum vulgare subsp. vulgare cDNA clone HP02G07
3-PRIME, mRNA sequence
Length = 674
Score = 40.1 bits (20), Expect = 0.16
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 809 cggccgacgatgcacagggtggtacagatgctggag 844
||||||||||||||| ||||| ||||||||||||
Sbjct: 227 cggccgacgatgcaccatgtggtgcagatgctggag 192
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 93,994
Number of Sequences: 312970
Number of extensions: 93994
Number of successful extensions: 30445
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30412
Number of HSP's gapped (non-prelim): 31
length of query: 1164
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1145
effective length of database: 169,188,109
effective search space: 193720384805
effective search space used: 193720384805
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)