BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405245.2.2
(616 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF623132.1|BF623132 HVSMEa0014L04f Hordeum vulgare seedl... 339 6e-092
gb|BM816266.1|BM816266 HC01H12_T3.ab1 HC Hordeum vulgare su... 339 6e-092
gb|BM816267.1|BM816267 HB105E10_SK.ab1 HB Hordeum vulgare s... 339 6e-092
gb|BQ463470.1|BQ463470 HI05G01r HI Hordeum vulgare subsp. v... 339 6e-092
gb|BM370842.2|BM370842 EBro04_SQ002_H20_R root, 3 week, sal... 339 6e-092
gb|BQ756731.1|BQ756731 EBem09_SQ003_J13_R embryo, 1 Day ger... 339 6e-092
gb|BQ768330.1|BQ768330 EBro08_SQ011_L11_R root, 3 week, dro... 339 6e-092
gb|BU983773.1|BU983773 HA31A05r HA Hordeum vulgare subsp. v... 339 6e-092
gb|BU984019.1|BU984019 HA31L23r HA Hordeum vulgare subsp. v... 339 6e-092
gb|BU994116.1|BU994116 HM05M18r HM Hordeum vulgare subsp. v... 339 6e-092
gb|AV909356.1|AV909356 AV909356 K. Sato unpublished cDNA li... 335 1e-090
gb|AV911246.1|AV911246 AV911246 K. Sato unpublished cDNA li... 335 1e-090
gb|BJ467893.1|BJ467893 BJ467893 K. Sato unpublished cDNA li... 327 2e-088
gb|BQ662350.1|BQ662350 HS01P12w HS Hordeum vulgare subsp. v... 327 2e-088
gb|BQ762433.1|BQ762433 EBro01_SQ005_H19_R root, 3 week, hyd... 327 2e-088
gb|AV915524.1|AV915524 AV915524 K. Sato unpublished cDNA li... 325 1e-087
gb|AV920622.1|AV920622 AV920622 K. Sato unpublished cDNA li... 313 4e-084
gb|AJ463225.1|AJ463225 AJ463225 S00002 Hordeum vulgare subs... 309 6e-083
gb|CB880777.1|CB880777 HM07M18w HM Hordeum vulgare subsp. v... 309 6e-083
gb|BM370810.2|BM370810 EBro04_SQ002_F16_R root, 3 week, sal... 276 8e-073
gb|AL500754.1|AL500754 AL500754 Hordeum vulgare Barke roots... 264 3e-069
gb|AL510412.1|AL510412 AL510412 Hordeum vulgare Barke devel... 264 3e-069
gb|BI958959.1|BI958959 HVSMEn0017G17f Hordeum vulgare rachi... 264 3e-069
gb|BI959762.1|BI959762 HVSMEn0021F08f Hordeum vulgare rachi... 264 3e-069
gb|AV914685.1|AV914685 AV914685 K. Sato unpublished cDNA li... 264 3e-069
gb|AV916593.1|AV916593 AV916593 K. Sato unpublished cDNA li... 264 3e-069
gb|AV918153.1|AV918153 AV918153 K. Sato unpublished cDNA li... 264 3e-069
gb|BM816403.1|BM816403 HC108H05_SK.ab1 HC Hordeum vulgare s... 264 3e-069
gb|AJ432034.1|AJ432034 AJ432034 S00002 Hordeum vulgare subs... 264 3e-069
gb|BJ464194.1|BJ464194 BJ464194 K. Sato unpublished cDNA li... 264 3e-069
gb|BJ466653.1|BJ466653 BJ466653 K. Sato unpublished cDNA li... 264 3e-069
gb|BJ467967.1|BJ467967 BJ467967 K. Sato unpublished cDNA li... 264 3e-069
gb|BQ768409.1|BQ768409 EBro08_SQ011_K14_R root, 3 week, dro... 264 3e-069
gb|AV917477.1|AV917477 AV917477 K. Sato unpublished cDNA li... 258 2e-067
gb|BI958137.1|BI958137 HVSMEn0013J09f Hordeum vulgare rachi... 256 8e-067
gb|AL502363.1|AL502363 AL502363 Hordeum vulgare Barke roots... 250 5e-065
gb|AV918120.1|AV918120 AV918120 K. Sato unpublished cDNA li... 250 5e-065
gb|AV919777.1|AV919777 AV919777 K. Sato unpublished cDNA li... 250 5e-065
gb|BF260200.2|BF260200 HVSMEf0021F24f Hordeum vulgare seedl... 248 2e-064
gb|CK122417.1|CK122417 BES1824103e24 BES1824 Hordeum vulgar... 248 2e-064
gb|AV921737.1|AV921737 AV921737 K. Sato unpublished cDNA li... 220 4e-056
gb|BQ766369.1|BQ766369 EBro08_SQ005_E20_R root, 3 week, dro... 218 2e-055
gb|BU994867.1|BU994867 HM08H04r HM Hordeum vulgare subsp. v... 218 2e-055
gb|AL509867.1|AL509867 AL509867 Hordeum vulgare Barke devel... 204 2e-051
gb|CB880990.1|CB880990 HM08H04w HM Hordeum vulgare subsp. v... 194 2e-048
gb|AL500306.1|AL500306 AL500306 Hordeum vulgare Barke etiol... 182 9e-045
gb|BI959767.1|BI959767 HVSMEn0021F18f Hordeum vulgare rachi... 182 9e-045
gb|BQ462810.1|BQ462810 HI02B08r HI Hordeum vulgare subsp. v... 180 4e-044
gb|CB858524.1|CB858524 HI07F20w HI Hordeum vulgare subsp. v... 176 6e-043
gb|BQ767763.1|BQ767763 EBro08_SQ009_D22_R root, 3 week, dro... 172 9e-042
gb|BM370864.2|BM370864 EBro04_SQ002_J12_R root, 3 week, sal... 165 2e-039
gb|BQ768396.1|BQ768396 EBro08_SQ011_H16_R root, 3 week, dro... 157 5e-037
gb|BQ762919.1|BQ762919 EBro02_SQ006_D18_R root, 3 week, hyd... 145 2e-033
gb|CV063161.1|CV063161 BNEL87c6 Barley EST endosperm librar... 135 2e-030
gb|BI959146.1|BI959146 HVSMEn0018G05f Hordeum vulgare rachi... 133 7e-030
gb|BF259284.2|BF259284 HVSMEf0018M04f Hordeum vulgare seedl... 131 3e-029
gb|BF253761.2|BF253761 HVSMEf0002A22f Hordeum vulgare seedl... 125 2e-027
gb|AJ462404.1|AJ462404 AJ462404 S00002 Hordeum vulgare subs... 125 2e-027
gb|AJ462405.1|AJ462405 AJ462405 S00002 Hordeum vulgare subs... 125 2e-027
gb|CA007928.1|CA007928 HU09G15r HU Hordeum vulgare subsp. v... 125 2e-027
gb|AJ435096.1|AJ435096 AJ435096 S00002 Hordeum vulgare subs... 123 7e-027
gb|BJ463720.1|BJ463720 BJ463720 K. Sato unpublished cDNA li... 123 7e-027
gb|BQ662559.1|BQ662559 HS02P12u HS Hordeum vulgare subsp. v... 123 7e-027
gb|BU971118.1|BU971118 HB16K16r BC Hordeum vulgare subsp. v... 121 3e-026
gb|AL511829.1|AL511829 AL511829 Hordeum vulgare Barke devel... 115 2e-024
gb|BF257421.2|BF257421 HVSMEf0012N20f Hordeum vulgare seedl... 115 2e-024
gb|AV920851.1|AV920851 AV920851 K. Sato unpublished cDNA li... 115 2e-024
gb|AV921149.1|AV921149 AV921149 K. Sato unpublished cDNA li... 115 2e-024
gb|AV921164.1|AV921164 AV921164 K. Sato unpublished cDNA li... 115 2e-024
gb|BJ467846.1|BJ467846 BJ467846 K. Sato unpublished cDNA li... 115 2e-024
gb|CV054745.1|CV054745 BNEL112h10 Barley EST endosperm libr... 115 2e-024
gb|BJ466501.1|BJ466501 BJ466501 K. Sato unpublished cDNA li... 111 3e-023
gb|AW982536.3|AW982536 HVSMEg0003I12f Hordeum vulgare pre-a... 109 1e-022
gb|BQ459760.1|BQ459760 HA08C16r HA Hordeum vulgare subsp. v... 109 1e-022
gb|BQ657495.1|BQ657495 HA08C16u HA Hordeum vulgare subsp. v... 109 1e-022
gb|AL512025.1|AL512025 AL512025 Hordeum vulgare Barke devel... 103 7e-021
gb|AV915738.1|AV915738 AV915738 K. Sato unpublished cDNA li... 92 3e-017
gb|BU983739.1|BU983739 HA30O06r HA Hordeum vulgare subsp. v... 92 3e-017
gb|AV912742.1|AV912742 AV912742 K. Sato unpublished cDNA li... 90 1e-016
gb|BI957972.1|BI957972 HVSMEn0012L17f Hordeum vulgare rachi... 84 6e-015
gb|BE455861.3|BE455861 HVSMEg0015N13f Hordeum vulgare pre-a... 82 2e-014
gb|BF623994.2|BF623994 HVSMEa0008H04f Hordeum vulgare seedl... 80 1e-013
gb|BQ766482.1|BQ766482 EBro08_SQ006_N06_R root, 3 week, dro... 80 1e-013
gb|BU999760.1|BU999760 HI15K19r HI Hordeum vulgare subsp. v... 64 6e-009
gb|AV916910.1|AV916910 AV916910 K. Sato unpublished cDNA li... 62 2e-008
gb|BU967567.1|BU967567 HB04L04r BC Hordeum vulgare subsp. v... 60 9e-008
gb|BJ467113.1|BJ467113 BJ467113 K. Sato unpublished cDNA li... 56 1e-006
gb|BF065332.2|BF065332 HV_CEb0012C09f Hordeum vulgare seedl... 48 3e-004
gb|BI957193.1|BI957193 HVSMEn0008B06f Hordeum vulgare rachi... 44 0.005
gb|BQ135334.1|BQ135334 LP10054 Lemma/palea-enriched cDNA li... 42 0.021
gb|CV057192.1|CV057192 BNEL25a5 Barley EST endosperm librar... 38 0.33
gb|CV058140.1|CV058140 BNEL34g4 Barley EST endosperm librar... 38 0.33
gb|CV059705.1|CV059705 BNEL50a7 Barley EST endosperm librar... 38 0.33
gb|CV062239.1|CV062239 BNEL77h1 Barley EST endosperm librar... 38 0.33
gb|CV063374.1|CV063374 BNEL89f12 Barley EST endosperm libra... 38 0.33
>gb|BF623132.1|BF623132 HVSMEa0014L04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0014L04f, mRNA sequence
Length = 830
Score = 339 bits (171), Expect = 6e-092
Identities = 256/283 (90%), Gaps = 1/283 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| |||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 200 ctgcagccgacgagccccacggccgtgaagcaggtgagcgtggtgtgggacgcgtacgag 259
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | |||
Sbjct: 260 gccaccaagggcgcccacgccgtgtgcatcctcaccgagtggaacgagttcaagtcgctg 319
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 320 gactacaagaagatcttcgacaacatgcagaagccggccttcgtcttcgacggccgcaac 379
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| ||||| | |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtcgtcgacgccgagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 439
Query: 242 ctcgacgcctggcttaaggacatgcccgcggtcgcttaattcg 284
||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct: 440 ctcgacgggtggctcaaggacatgcccgccgtcgcctaattcg 482
>gb|BM816266.1|BM816266 HC01H12_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC01H12_T3.ab1 similar to Hydrogen
dehydrogenase,Phosphoglycerate dehydrogenase,Glucose
1-dehydrogenase,Hydrogenase,Cytochrome-c3
hydrogenase,GDP-mannose 6-dehydrogenase,UDP-glucose
6-dehydrogenase,Glycine dehydrogenase,Transferred entry:
1.18.99.1,, mRNA sequence
Length = 756
Score = 339 bits (171), Expect = 6e-092
Identities = 256/283 (90%), Gaps = 1/283 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| |||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 243 ctgcagccgacgagccccacggccgtgaagcaggtgagcgtggtgtgggacgcgtacgag 302
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | |||
Sbjct: 303 gccaccaagggcgcccacgccgtgtgcatcctcaccgagtggaacgagttcaagtcgctg 362
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 363 gactacaagaagatcttcgacaacatgcagaagccggccttcgtcttcgacggccgcaac 422
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| ||||| | |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gtcgtcgacgccgagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 482
Query: 242 ctcgacgcctggcttaaggacatgcccgcggtcgcttaattcg 284
||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct: 483 ctcgacgggtggctcaaggacatgcccgccgtcgcctaattcg 525
>gb|BM816267.1|BM816267 HB105E10_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB105E10_SK.ab1 similar to Hydrogen
dehydrogenase,Phosphoglycerate dehydrogenase,Glucose
1-dehydrogenase,Hydrogenase,Cytochrome-c3
hydrogenase,GDP-mannose 6-dehydrogenase,UDP-glucose
6-dehydrogenase,Glycine dehydrogenase,Transferred entry:
1.18.99.1,, mRNA sequence
Length = 878
Score = 339 bits (171), Expect = 6e-092
Identities = 256/283 (90%), Gaps = 1/283 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| |||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 296 ctgcagccgacgagccccacggccgtgaagcaggtgagcgtggtgtgggacgcgtacgag 355
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | |||
Sbjct: 356 gccaccaagggcgcccacgccgtgtgcatcctcaccgagtggaacgagttcaagtcgctg 415
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 416 gactacaagaagatcttcgacaacatgcagaagccggccttcgtcttcgacggccgcaac 475
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| ||||| | |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gtcgtcgacgccgagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 535
Query: 242 ctcgacgcctggcttaaggacatgcccgcggtcgcttaattcg 284
||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct: 536 ctcgacgggtggctcaaggacatgcccgccgtcgcctaattcg 578
>gb|BQ463470.1|BQ463470 HI05G01r HI Hordeum vulgare subsp. vulgare cDNA clone HI05G01
5-PRIME, mRNA sequence
Length = 478
Score = 339 bits (171), Expect = 6e-092
Identities = 256/283 (90%), Gaps = 1/283 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| |||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 66 ctgcagccgacgagccccacggccgtgaagcaggtgagcgtggtgtgggacgcgtacgag 125
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | |||
Sbjct: 126 gccaccaagggcgcccacgccgtgtgcatcctcaccgagtggaacgagttcaagtcgctg 185
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 186 gactacaagaagatcttcgacaacatgcagaagccggccttcgtcttcgacggccgcaac 245
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| ||||| | |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gtcgtcgacgccgagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 305
Query: 242 ctcgacgcctggcttaaggacatgcccgcggtcgcttaattcg 284
||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct: 306 ctcgacgggtggctcaaggacatgcccgccgtcgcctaattcg 348
>gb|BM370842.2|BM370842 EBro04_SQ002_H20_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ002_H20 5', mRNA sequence
Length = 650
Score = 339 bits (171), Expect = 6e-092
Identities = 256/283 (90%), Gaps = 1/283 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| |||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 309 ctgcagccgacgagccccacggccgtgaagcaggtgagcgtggtgtgggacgcgtacgag 368
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | |||
Sbjct: 369 gccaccaagggcgcccacgccgtgtgcatcctcaccgagtggaacgagttcaagtcgctg 428
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 429 gactacaagaagatcttcgacaacatgcagaagccggccttcgtcttcgacggccgcaac 488
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| ||||| | |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gtcgtcgacgccgagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 548
Query: 242 ctcgacgcctggcttaaggacatgcccgcggtcgcttaattcg 284
||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct: 549 ctcgacgggtggctcaaggacatgcccgccgtcgcctaattcg 591
>gb|BQ756731.1|BQ756731 EBem09_SQ003_J13_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ003_J13 5', mRNA sequence
Length = 484
Score = 339 bits (171), Expect = 6e-092
Identities = 256/283 (90%), Gaps = 1/283 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| |||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 65 ctgcagccgacgagccccacggccgtgaagcaggtgagcgtggtgtgggacgcgtacgag 124
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | |||
Sbjct: 125 gccaccaagggcgcccacgccgtgtgcatcctcaccgagtggaacgagttcaagtcgctg 184
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 185 gactacaagaagatcttcgacaacatgcagaagccggccttcgtcttcgacggccgcaac 244
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| ||||| | |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gtcgtcgacgccgagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 304
Query: 242 ctcgacgcctggcttaaggacatgcccgcggtcgcttaattcg 284
||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct: 305 ctcgacgggtggctcaaggacatgcccgccgtcgcctaattcg 347
>gb|BQ768330.1|BQ768330 EBro08_SQ011_L11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_L11 5', mRNA sequence
Length = 570
Score = 339 bits (171), Expect = 6e-092
Identities = 256/283 (90%), Gaps = 1/283 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| |||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 228 ctgcagccgacgagccccacggccgtgaagcaggtgagcgtggtgtgggacgcgtacgag 287
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | |||
Sbjct: 288 gccaccaagggcgcccacgccgtgtgcatcctcaccgagtggaacgagttcaagtcgctg 347
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 348 gactacaagaagatcttcgacaacatgcagaagccggccttcgtcttcgacggccgcaac 407
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| ||||| | |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gtcgtcgacgccgagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 467
Query: 242 ctcgacgcctggcttaaggacatgcccgcggtcgcttaattcg 284
||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct: 468 ctcgacgggtggctcaaggacatgcccgccgtcgcctaattcg 510
>gb|BU983773.1|BU983773 HA31A05r HA Hordeum vulgare subsp. vulgare cDNA clone HA31A05
5-PRIME, mRNA sequence
Length = 572
Score = 339 bits (171), Expect = 6e-092
Identities = 256/283 (90%), Gaps = 1/283 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| |||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 51 ctgcagccgacgagccccacggccgtgaagcaggtgagcgtggtgtgggacgcgtacgag 110
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | |||
Sbjct: 111 gccaccaagggcgcccacgccgtgtgcatcctcaccgagtggaacgagttcaagtcgctg 170
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 171 gactacaagaagatcttcgacaacatgcagaagccggccttcgtcttcgacggccgcaac 230
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| ||||| | |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gtcgtcgacgccgagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 290
Query: 242 ctcgacgcctggcttaaggacatgcccgcggtcgcttaattcg 284
||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct: 291 ctcgacgggtggctcaaggacatgcccgccgtcgcctaattcg 333
>gb|BU984019.1|BU984019 HA31L23r HA Hordeum vulgare subsp. vulgare cDNA clone HA31L23
5-PRIME, mRNA sequence
Length = 565
Score = 339 bits (171), Expect = 6e-092
Identities = 256/283 (90%), Gaps = 1/283 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| |||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 51 ctgcagccgacgagccccacggccgtgaagcaggtgagcgtggtgtgggacgcgtacgag 110
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | |||
Sbjct: 111 gccaccaagggcgcccacgccgtgtgcatcctcaccgagtggaacgagttcaagtcgctg 170
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 171 gactacaagaagatcttcgacaacatgcagaagccggccttcgtcttcgacggccgcaac 230
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| ||||| | |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gtcgtcgacgccgagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 290
Query: 242 ctcgacgcctggcttaaggacatgcccgcggtcgcttaattcg 284
||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct: 291 ctcgacgggtggctcaaggacatgcccgccgtcgcctaattcg 333
>gb|BU994116.1|BU994116 HM05M18r HM Hordeum vulgare subsp. vulgare cDNA clone HM05M18
5-PRIME, mRNA sequence
Length = 497
Score = 339 bits (171), Expect = 6e-092
Identities = 256/283 (90%), Gaps = 1/283 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| |||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 49 ctgcagccgacgagccccacggccgtgaagcaggtgagcgtggtgtgggacgcgtacgag 108
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | |||
Sbjct: 109 gccaccaagggcgcccacgccgtgtgcatcctcaccgagtggaacgagttcaagtcgctg 168
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 169 gactacaagaagatcttcgacaacatgcagaagccggccttcgtcttcgacggccgcaac 228
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| ||||| | |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gtcgtcgacgccgagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 288
Query: 242 ctcgacgcctggcttaaggacatgcccgcggtcgcttaattcg 284
||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct: 289 ctcgacgggtggctcaaggacatgcccgccgtcgcctaattcg 331
>gb|AV909356.1|AV909356 AV909356 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12i15 5', mRNA sequence
Length = 662
Score = 335 bits (169), Expect = 1e-090
Identities = 247/273 (90%)
Strand = Plus / Plus
Query: 12 cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgaggccaccaagg 71
|||||||||||||| | || ||||||| | ||||||||||||||||||||||||||||
Sbjct: 24 cgagccccacggccgtgaagcaggtgagcgtggtgtgggacgcgtacgaggccaccaagg 83
Query: 72 gcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctggactaccaga 131
||||||||| ||||||||||| ||||||||| ||||||||||| | ||||||||| |||
Sbjct: 84 gcgcccacgccgtgtgcatcctcaccgagtggaacgagttcaagtcgctggactacaaga 143
Query: 132 agatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacc 191
||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||
Sbjct: 144 agatcttcgacaacatgcagaagccggccttcgtcttcgacggccgcaacgtcgtcgacg 203
Query: 192 cggagaagttgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcct 251
| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 204 ccgagaagctcagggagatcggcttcatcgtctactccatcggcaagccgctcgacgggt 263
Query: 252 ggcttaaggacatgcccgcggtcgcttaattcg 284
|||| |||||||||||||| ||||| |||||||
Sbjct: 264 ggctcaaggacatgcccgccgtcgcctaattcg 296
>gb|AV911246.1|AV911246 AV911246 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12i15 3', mRNA sequence
Length = 606
Score = 335 bits (169), Expect = 1e-090
Identities = 247/273 (90%)
Strand = Plus / Minus
Query: 12 cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgaggccaccaagg 71
|||||||||||||| | || ||||||| | ||||||||||||||||||||||||||||
Sbjct: 603 cgagccccacggccgtgaagcaggtgagcgtggtgtgggacgcgtacgaggccaccaagg 544
Query: 72 gcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctggactaccaga 131
||||||||| ||||||||||| ||||||||| ||||||||||| | ||||||||| |||
Sbjct: 543 gcgcccacgccgtgtgcatcctcaccgagtggaacgagttcaagtcgctggactacaaga 484
Query: 132 agatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacc 191
||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||
Sbjct: 483 agatcttcgacaacatgcagaagccggccttcgtcttcgacggccgcaacgtcgtcgacg 424
Query: 192 cggagaagttgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcct 251
| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 423 ccgagaagctcagggagatcggcttcatcgtctactccatcggcaagccgctcgacgggt 364
Query: 252 ggcttaaggacatgcccgcggtcgcttaattcg 284
|||| |||||||||||||| ||||| |||||||
Sbjct: 363 ggctcaaggacatgcccgccgtcgcctaattcg 331
>gb|BJ467893.1|BJ467893 BJ467893 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30d14 3', mRNA sequence
Length = 607
Score = 327 bits (165), Expect = 2e-088
Identities = 222/241 (92%)
Strand = Plus / Minus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 598 gtgtgggacgcgtacgaggccaccaagggcgcccacgccgtgtgcatcctcaccgagtgg 539
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| | ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 538 aacgagttcaagtcgctggactacaagaagatcttcgacaacatgcagaagccggccttc 479
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
|||||||||||||||||| || ||||| | |||||| | |||||||||||||||||||||
Sbjct: 478 gtcttcgacggccgcaacgtcgtcgacgccgagaagctcagggagatcggcttcatcgtc 419
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgcttaattc 283
||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||
Sbjct: 418 tactccatcggcaagccgctcgacgggtggctcaaggacatgcccgccgtcgcctaattc 359
Query: 284 g 284
|
Sbjct: 358 g 358
>gb|BQ662350.1|BQ662350 HS01P12w HS Hordeum vulgare subsp. vulgare cDNA clone HS01P12
3-PRIME, mRNA sequence
Length = 653
Score = 327 bits (165), Expect = 2e-088
Identities = 254/283 (89%), Gaps = 1/283 (0%)
Strand = Plus / Minus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| ||||||||||| || | || ||||||| | |||||| |||||||||||
Sbjct: 616 ctgcagccgacgagccccacgnccgtgaagcaggtgagcgtggtgtggnacgcgtacgag 557
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | |||
Sbjct: 556 gccaccaagggcgcccacgccgtgtgcatcctcaccgagtggaacgagttcaagtcgctg 497
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 496 gactacaagaagatcttcgacaacatgcagaagccggccttcgtcttcgacggccgcaac 437
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| ||||| | |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtcgtcgacgccgagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 377
Query: 242 ctcgacgcctggcttaaggacatgcccgcggtcgcttaattcg 284
||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct: 376 ctcgacgggtggctcaaggacatgcccgccgtcgcctaattcg 334
>gb|BQ762433.1|BQ762433 EBro01_SQ005_H19_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_H19 5', mRNA sequence
Length = 528
Score = 327 bits (165), Expect = 2e-088
Identities = 222/241 (92%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 24 gtgtgggacgcgtacgaggccaccaagggcgcccacgccgtgtgcatcctcaccgagtgg 83
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| | ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 84 aacgagttcaagtcgctggactacaagaagatcttcgacaacatgcagaagccggccttc 143
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
|||||||||||||||||| || ||||| | |||||| | |||||||||||||||||||||
Sbjct: 144 gtcttcgacggccgcaacgtcgtcgacgccgagaagctcagggagatcggcttcatcgtc 203
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgcttaattc 283
||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||
Sbjct: 204 tactccatcggcaagccgctcgacgggtggctcaaggacatgcccgccgtcgcctaattc 263
Query: 284 g 284
|
Sbjct: 264 g 264
>gb|AV915524.1|AV915524 AV915524 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14o14 5', mRNA sequence
Length = 621
Score = 325 bits (164), Expect = 1e-087
Identities = 256/284 (90%), Gaps = 2/284 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| |||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 336 ctgcagccgacgagccccacggccgtgaagcaggtgagcgtggtgtgggacgcgtacgag 395
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | |||
Sbjct: 396 gccaccaagggcgcccacgccgtgtgcatcctcaccgagtggaacgagttcaagtcgctg 455
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 456 gactacaagaagatcttcgacaacatgcagaagccggccttcgtcttcgacggccgcaac 515
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccg 241
|| ||||| | |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtcgtcgacgccgagaagctcagggagatcggcttcatcgtctactccatcggcaagccg 575
Query: 242 ctcgacgcctggcttaaggacatg-cccgcggtcgcttaattcg 284
||||||| ||||| ||||||||| ||||| ||||| |||||||
Sbjct: 576 ctcgacgggtggctcaaggacatgccccgccgtcgcctaattcg 619
>gb|AV920622.1|AV920622 AV920622 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14o14 3', mRNA sequence
Length = 708
Score = 313 bits (158), Expect = 4e-084
Identities = 222/242 (91%), Gaps = 1/242 (0%)
Strand = Plus / Minus
Query: 44 gtgtgggacgcgtacgaggccaccaaggg-cgcccacggggtgtgcatcctgaccgagtg 102
||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 612 gtgtgggacgcgtacgaggccaccaaggggcgcccacgccgtgtgcatcctcaccgagtg 553
Query: 103 ggacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgcctt 162
| ||||||||||| | ||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 552 gaacgagttcaagtcgctggactacaagaagatcttcgacaacatgcagaagccggcctt 493
Query: 163 cgtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgt 222
||||||||||||||||||| || ||||| | |||||| | ||||||||||||||||||||
Sbjct: 492 cgtcttcgacggccgcaacgtcgtcgacgccgagaagctcagggagatcggcttcatcgt 433
Query: 223 ctactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgcttaatt 282
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 432 ctactccatcggcaagccgctcgacgggtggctcaaggacatgcccgccgtcgcctaatt 373
Query: 283 cg 284
||
Sbjct: 372 cg 371
>gb|AJ463225.1|AJ463225 AJ463225 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200034H12F2, mRNA sequence
Length = 420
Score = 309 bits (156), Expect = 6e-083
Identities = 213/232 (91%)
Strand = Plus / Plus
Query: 53 gcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttc 112
|||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct: 1 gcgtacgaggccaccaagggcgcccacgccgtgtgcatcctcaccgagtggaacgagttc 60
Query: 113 aagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgac 172
||| | ||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 61 aagtcgctggactacaagaagatcttcgacaacatgcagaagccggccttcgtcttcgac 120
Query: 173 ggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctactccatc 232
||||||||| || ||||| | |||||| | ||||||||||||||||||||||||||||||
Sbjct: 121 ggccgcaacgtcgtcgacgccgagaagctcagggagatcggcttcatcgtctactccatc 180
Query: 233 ggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgcttaattcg 284
|||||||||||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct: 181 ggcaagccgctcgacgggtggctcaaggacatgcccgccgtcgcctaattcg 232
>gb|CB880777.1|CB880777 HM07M18w HM Hordeum vulgare subsp. vulgare cDNA clone HM07M18
3-PRIME, mRNA sequence
Length = 614
Score = 309 bits (156), Expect = 6e-083
Identities = 213/232 (91%)
Strand = Plus / Minus
Query: 53 gcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttc 112
|||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct: 614 gcgtacgaggccaccaagggcgcccacgccgtgtgcatcctcaccgagtggaacgagttc 555
Query: 113 aagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgac 172
||| | ||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 554 aagtcgctggactacaagaagatcttcgacaacatgcagaagccggccttcgtcttcgac 495
Query: 173 ggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctactccatc 232
||||||||| || ||||| | |||||| | ||||||||||||||||||||||||||||||
Sbjct: 494 ggccgcaacgtcgtcgacgccgagaagctcagggagatcggcttcatcgtctactccatc 435
Query: 233 ggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgcttaattcg 284
|||||||||||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct: 434 ggcaagccgctcgacgggtggctcaaggacatgcccgccgtcgcctaattcg 383
>gb|BM370810.2|BM370810 EBro04_SQ002_F16_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ002_F16 5', mRNA sequence
Length = 490
Score = 276 bits (139), Expect = 8e-073
Identities = 209/231 (90%), Gaps = 1/231 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| |||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 260 ctgcagccgacgagccccacggccgtgaagcaggtgagcgtggtgtgggacgcgtacgag 319
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | |||
Sbjct: 320 gccaccaagggcgcccacgccgtgtgcatcctcaccgagtggaacgagttcaagtcgctg 379
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 380 gactacaagaagatcttcgacaacatgcagaagccggccttcgtcttcgacggccgcaac 439
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcgtctactccatc 232
|| ||||| | |||||| | ||||||||||||||||||||||||||||||
Sbjct: 440 gtcgtcgacgccgagaagctcagggagatcggcttcatcgtctactccatc 490
>gb|AL500754.1|AL500754 AL500754 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01M02u 3', mRNA sequence
Length = 582
Score = 264 bits (133), Expect = 3e-069
Identities = 208/233 (89%)
Strand = Plus / Minus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 497 gtgtgggacgcgtacgaggccaccaagggggcccatgccgtgtgcatcctgaccgagtgg 438
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 437 aacgagttcaaggagctggactaccagaagatcttcaacaacatgcagaagccggccttc 378
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||||||||| |||||| || || || | || ||| | |||||||| |||||||| |||
Sbjct: 377 gtcttcgacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattgtc 318
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
||||||||||||||||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 317 tactccatcggcaagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 265
>gb|AL510412.1|AL510412 AL510412 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04N13u 3',
mRNA sequence
Length = 668
Score = 264 bits (133), Expect = 3e-069
Identities = 208/233 (89%)
Strand = Plus / Minus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 480 gtgtgggacgcgtacgaggccaccaagggggcccatgccgtgtgcatcctgaccgagtgg 421
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 420 aacgagttcaaggagctggactaccagaagatcttcaacaacatgcagaagccggccttc 361
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||||||||| |||||| || || || | || ||| | |||||||| |||||||| |||
Sbjct: 360 gtcttcgacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattgtc 301
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
||||||||||||||||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 300 tactccatcggcaagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 248
>gb|BI958959.1|BI958959 HVSMEn0017G17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017G17f, mRNA sequence
Length = 633
Score = 264 bits (133), Expect = 3e-069
Identities = 208/233 (89%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 364 gtgtgggacgcgtacgaggccaccaagggggcccatgccgtgtgcatcctgaccgagtgg 423
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 424 aacgagttcaaggagctggactaccagaagatcttcaacaacatgcagaagccggccttc 483
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||||||||| |||||| || || || | || ||| | |||||||| |||||||| |||
Sbjct: 484 gtcttcgacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattgtc 543
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
||||||||||||||||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 544 tactccatcggcaagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 596
>gb|BI959762.1|BI959762 HVSMEn0021F08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021F08f, mRNA sequence
Length = 644
Score = 264 bits (133), Expect = 3e-069
Identities = 208/233 (89%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 364 gtgtgggacgcgtacgaggccaccaagggggcccatgccgtgtgcatcctgaccgagtgg 423
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 424 aacgagttcaaggagctggactaccagaagatcttcaacaacatgcagaagccggccttc 483
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||||||||| |||||| || || || | || ||| | |||||||| |||||||| |||
Sbjct: 484 gtcttcgacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattgtc 543
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
||||||||||||||||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 544 tactccatcggcaagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 596
>gb|AV914685.1|AV914685 AV914685 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7j04 5', mRNA sequence
Length = 512
Score = 264 bits (133), Expect = 3e-069
Identities = 208/233 (89%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 27 gtgtgggacgcgtacgaggccaccaagggggcccatgccgtgtgcatcctgaccgagtgg 86
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 87 aacgagttcaaggagctggactaccagaagatcttcaacaacatgcagaagccggccttc 146
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||||||||| |||||| || || || | || ||| | |||||||| |||||||| |||
Sbjct: 147 gtcttcgacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattgtc 206
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
||||||||||||||||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 207 tactccatcggcaagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 259
>gb|AV916593.1|AV916593 AV916593 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p02 5', mRNA sequence
Length = 521
Score = 264 bits (133), Expect = 3e-069
Identities = 208/233 (89%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 36 gtgtgggacgcgtacgaggccaccaagggggcccatgccgtgtgcatcctgaccgagtgg 95
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 96 aacgagttcaaggagctggactaccagaagatcttcaacaacatgcagaagccggccttc 155
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||||||||| |||||| || || || | || ||| | |||||||| |||||||| |||
Sbjct: 156 gtcttcgacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattgtc 215
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
||||||||||||||||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 216 tactccatcggcaagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 268
>gb|AV918153.1|AV918153 AV918153 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20a23 3', mRNA sequence
Length = 631
Score = 264 bits (133), Expect = 3e-069
Identities = 208/233 (89%)
Strand = Plus / Minus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 450 gtgtgggacgcgtacgaggccaccaagggggcccatgccgtgtgcatcctgaccgagtgg 391
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 390 aacgagttcaaggagctggactaccagaagatcttcaacaacatgcagaagccggccttc 331
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||||||||| |||||| || || || | || ||| | |||||||| |||||||| |||
Sbjct: 330 gtcttcgacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattgtc 271
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
||||||||||||||||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 270 tactccatcggcaagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 218
>gb|BM816403.1|BM816403 HC108H05_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC108H05_SK.ab1 similar to Hydrogen
dehydrogenase,Phosphoglycerate dehydrogenase,Glucose
1-dehydrogenase,Hydrogenase,Cytochrome-c3
hydrogenase,GDP-mannose 6-dehydrogenase,UDP-glucose
6-dehydrogenase,Glycine dehydrogenase,Transferred entry:
1.18.99.1,, mRNA sequence
Length = 886
Score = 264 bits (133), Expect = 3e-069
Identities = 208/233 (89%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 425 gtgtgggacgcgtacgaggccaccaagggggcccatgccgtgtgcatcctgaccgagtgg 484
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 485 aacgagttcaaggagctggactaccagaagatcttcaacaacatgcagaagccggccttc 544
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||||||||| |||||| || || || | || ||| | |||||||| |||||||| |||
Sbjct: 545 gtcttcgacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattgtc 604
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
||||||||||||||||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 605 tactccatcggcaagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 657
>gb|AJ432034.1|AJ432034 AJ432034 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200029E07F1, mRNA sequence
Length = 639
Score = 264 bits (133), Expect = 3e-069
Identities = 208/233 (89%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 153 gtgtgggacgcgtacgaggccaccaagggggcccatgccgtgtgcatcctgaccgagtgg 212
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 213 aacgagttcaaggagctggactaccagaagatcttcaacaacatgcagaagccggccttc 272
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||||||||| |||||| || || || | || ||| | |||||||| |||||||| |||
Sbjct: 273 gtcttcgacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattgtc 332
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
||||||||||||||||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 333 tactccatcggcaagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 385
>gb|BJ464194.1|BJ464194 BJ464194 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33e10 5', mRNA sequence
Length = 534
Score = 264 bits (133), Expect = 3e-069
Identities = 208/233 (89%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 302 gtgtgggacgcgtacgaggccaccaagggggcccatgccgtgtgcatcctgaccgagtgg 361
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 362 aacgagttcaaggagctggactaccagaagatcttcaacaacatgcagaagccggccttc 421
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||||||||| |||||| || || || | || ||| | |||||||| |||||||| |||
Sbjct: 422 gtcttcgacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattgtc 481
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
||||||||||||||||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 482 tactccatcggcaagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 534
>gb|BJ466653.1|BJ466653 BJ466653 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33e10 3', mRNA sequence
Length = 650
Score = 264 bits (133), Expect = 3e-069
Identities = 208/233 (89%)
Strand = Plus / Minus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 451 gtgtgggacgcgtacgaggccaccaagggggcccatgccgtgtgcatcctgaccgagtgg 392
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 391 aacgagttcaaggagctggactaccagaagatcttcaacaacatgcagaagccggccttc 332
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||||||||| |||||| || || || | || ||| | |||||||| |||||||| |||
Sbjct: 331 gtcttcgacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattgtc 272
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
||||||||||||||||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 271 tactccatcggcaagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 219
>gb|BJ467967.1|BJ467967 BJ467967 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30i06 3', mRNA sequence
Length = 661
Score = 264 bits (133), Expect = 3e-069
Identities = 208/233 (89%)
Strand = Plus / Minus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 460 gtgtgggacgcgtacgaggccaccaagggggcccatgccgtgtgcatcctgaccgagtgg 401
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 400 aacgagttcaaggagctggactaccagaagatcttcaacaacatgcagaagccggccttc 341
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||||||||| |||||| || || || | || ||| | |||||||| |||||||| |||
Sbjct: 340 gtcttcgacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattgtc 281
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
||||||||||||||||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 280 tactccatcggcaagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 228
>gb|BQ768409.1|BQ768409 EBro08_SQ011_K14_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_K14 5', mRNA sequence
Length = 610
Score = 264 bits (133), Expect = 3e-069
Identities = 208/233 (89%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 277 gtgtgggacgcgtacgaggccaccaagggggcccatgccgtgtgcatcctgaccgagtgg 336
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 337 aacgagttcaaggagctggactaccagaagatcttcaacaacatgcagaagccggccttc 396
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||||||||| |||||| || || || | || ||| | |||||||| |||||||| |||
Sbjct: 397 gtcttcgacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattgtc 456
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
||||||||||||||||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 457 tactccatcggcaagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 509
>gb|AV917477.1|AV917477 AV917477 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10b05 3', mRNA sequence
Length = 626
Score = 258 bits (130), Expect = 2e-067
Identities = 207/233 (88%)
Strand = Plus / Minus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||| |||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 559 gtgtggnacgcgtacgaggccaccaagggggcccatgccgtgtgcatcctgaccgagtgg 500
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 499 aacgagttcaaggagctggactaccagaagatcttcaacaacatgcagaagccggccttc 440
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||||||||| |||||| || || || | || ||| | |||||||| |||||||| |||
Sbjct: 439 gtcttcgacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattgtc 380
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
||||||||||||||||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 379 tactccatcggcaagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 327
>gb|BI958137.1|BI958137 HVSMEn0013J09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013J09f, mRNA sequence
Length = 884
Score = 256 bits (129), Expect = 8e-067
Identities = 207/233 (88%)
Strand = Plus / Minus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||| ||||| | ||||||||| |||||||||||
Sbjct: 484 gtgtgggacgcgtacgaggccaccaagggggcccatgccgtgtgcatcttgaccgagtgg 425
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 424 aacgagttcaaggagctggactaccagaagatcttcaacaacatgcagaagccggccttc 365
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||||||||| |||||| || || || | || ||| | |||||||| |||||||| |||
Sbjct: 364 gtcttcgacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattgtc 305
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
||||||||||||||||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 304 tactccatcggcaagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 252
>gb|AL502363.1|AL502363 AL502363 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07F10u 3', mRNA sequence
Length = 598
Score = 250 bits (126), Expect = 5e-065
Identities = 208/234 (88%), Gaps = 1/234 (0%)
Strand = Plus / Minus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 479 gtgtgggacgcgtacgaggccaccaagggggcccatgccgtgtgcatcctgaccgagtgg 420
Query: 104 gacgagttcaagaccctggactacc-agaagatcttcgacaacatgcagaagcccgcctt 162
||||||||||| |||||||||| ||||||||||| |||||||||||||||| |||||
Sbjct: 419 aacgagttcaaggagctggactacccagaagatcttcaacaacatgcagaagccggcctt 360
Query: 163 cgtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgt 222
|||||||||||| |||||| || || || | || ||| | |||||||| |||||||| ||
Sbjct: 359 cgtcttcgacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattgt 300
Query: 223 ctactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
|||||||||||||||||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 299 ctactccatcggcaagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 246
>gb|AV918120.1|AV918120 AV918120 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p02 3', mRNA sequence
Length = 477
Score = 250 bits (126), Expect = 5e-065
Identities = 208/234 (88%), Gaps = 1/234 (0%)
Strand = Plus / Minus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcg-cccacggggtgtgcatcctgaccgagtg 102
||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||
Sbjct: 450 gtgtgggacgcgtacgaggccaccaaggggggcccatgccgtgtgcatcctgaccgagtg 391
Query: 103 ggacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgcctt 162
| ||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 390 gaacgagttcaaggagctggactaccagaagatcttcaacaacatgcagaagccggcctt 331
Query: 163 cgtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgt 222
|||||||||||| |||||| || || || | || ||| | |||||||| |||||||| ||
Sbjct: 330 cgtcttcgacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattgt 271
Query: 223 ctactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
|||||||||||||||||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 270 ctactccatcggcaagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 217
>gb|AV919777.1|AV919777 AV919777 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7j04 3', mRNA sequence
Length = 488
Score = 250 bits (126), Expect = 5e-065
Identities = 208/234 (88%), Gaps = 1/234 (0%)
Strand = Plus / Minus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcg-cccacggggtgtgcatcctgaccgagtg 102
||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||
Sbjct: 462 gtgtgggacgcgtacgaggccaccaaggggggcccatgccgtgtgcatcctgaccgagtg 403
Query: 103 ggacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgcctt 162
| ||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 402 gaacgagttcaaggagctggactaccagaagatcttcaacaacatgcagaagccggcctt 343
Query: 163 cgtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgt 222
|||||||||||| |||||| || || || | || ||| | |||||||| |||||||| ||
Sbjct: 342 cgtcttcgacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattgt 283
Query: 223 ctactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
|||||||||||||||||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 282 ctactccatcggcaagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 229
>gb|BF260200.2|BF260200 HVSMEf0021F24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021F24f, mRNA sequence
Length = 822
Score = 248 bits (125), Expect = 2e-064
Identities = 206/233 (88%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 417 gtgtgggacgcgtacgaggccaccaagggggcccatgccgtgtgcatcctgaccgagtgg 476
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 477 aacgagttcaaggagctggactaccagaagatcttcaacaacatgcagaagccggccttc 536
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
||||||||||| |||||| || || || | || || | |||||||| |||||||| |||
Sbjct: 537 gtcttcgacgggcgcaacgtcgtcaacgccgactagctcagggagattggcttcattgtc 596
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcccgcggtcgc 276
|||||||||||| |||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 597 tactccatcggccagccgctcgatgcgtggctcaaggacatgcccgcgatcgc 649
>gb|CK122417.1|CK122417 BES1824103e24 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E243 5-PRIME, mRNA sequence
Length = 616
Score = 248 bits (125), Expect = 2e-064
Identities = 197/220 (89%), Gaps = 1/220 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| |||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 397 ctgcagccgacgagccccacggccgtgaagcaggtgagcgtggtgtgggacgcgtacgag 456
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | |||
Sbjct: 457 gccaccaagggcgcccacgccgtgtgcatcctcaccgagtggaacgagttcaagtcgctg 516
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaac 181
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 517 gactacaagaagatcttcgacaacatgcagaagccggccttcgtcttcgacggccgcaac 576
Query: 182 atcatcgacccggagaagttgagggagatcggcttcatcg 221
|| ||||| | |||||| | | |||||||||||||||||
Sbjct: 577 gtcgtcgacgccgagaagctcanggagatcggcttcatcg 616
>gb|AV921737.1|AV921737 AV921737 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12j07 3', mRNA sequence
Length = 409
Score = 220 bits (111), Expect = 4e-056
Identities = 188/214 (87%)
Strand = Plus / Minus
Query: 63 ccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctgg 122
|||||||||| ||||| | ||||||||||||||||||||| ||||||||||| ||||
Sbjct: 409 ccaccaagggggcccatgccgtgtgcatcctgaccgagtggaacgagttcaaggagctgg 350
Query: 123 actaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgcaaca 182
||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 349 actaccagaagatcttcancaacatgcagaagccggccttcgtcttcgacgggcgcaacg 290
Query: 183 tcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaagccgc 242
|| || || | || ||| | |||||||| |||||||| ||||||||||||||||||||||
Sbjct: 289 tcgtcaacgccgacaagctcagggagattggcttcattgtctactccatcggcaagccgc 230
Query: 243 tcgacgcctggcttaaggacatgcccgcggtcgc 276
|||| || ||||| ||||||||||||||| ||||
Sbjct: 229 tcgatgcgtggctcaaggacatgcccgcgatcgc 196
>gb|BQ766369.1|BQ766369 EBro08_SQ005_E20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_E20 5', mRNA sequence
Length = 405
Score = 218 bits (110), Expect = 2e-055
Identities = 173/194 (89%)
Strand = Plus / Plus
Query: 83 gtgtgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgac 142
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct: 11 gtgtgcatcctgaccgagtggaacgagttcaaggagctggactaccagaagatcttcaac 70
Query: 143 aacatgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttg 202
|||||||||||||| ||||||||||||||||| |||||| || || || | || ||| |
Sbjct: 71 aacatgcagaagccggccttcgtcttcgacgggcgcaacgtcgtcaacgccgacaagctc 130
Query: 203 agggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggac 262
|||||||| |||||||| |||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 131 agggagattggcttcattgtctactccatcggcaagccgctcgatgcgtggctcaaggac 190
Query: 263 atgcccgcggtcgc 276
||||||||| ||||
Sbjct: 191 atgcccgcgatcgc 204
>gb|BU994867.1|BU994867 HM08H04r HM Hordeum vulgare subsp. vulgare cDNA clone HM08H04
5-PRIME, mRNA sequence
Length = 375
Score = 218 bits (110), Expect = 2e-055
Identities = 153/166 (92%), Gaps = 1/166 (0%)
Strand = Plus / Plus
Query: 119 ctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgc 178
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 46 ctggactac-agaagatcttcgacaacatgcagaagccggccttcgtcttcgacggccgc 104
Query: 179 aacatcatcgacccggagaagttgagggagatcggcttcatcgtctactccatcggcaag 238
||| || ||||| | |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 105 aacgtcgtcgacgccgagaagctcagggagatcggcttcatcgtctactccatcggcaag 164
Query: 239 ccgctcgacgcctggcttaaggacatgcccgcggtcgcttaattcg 284
|||||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct: 165 ccgctcgacgggtggctcaaggacatgcccgccgtcgcctaattcg 210
>gb|AL509867.1|AL509867 AL509867 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03B24u 3',
mRNA sequence
Length = 440
Score = 204 bits (103), Expect = 2e-051
Identities = 171/194 (88%)
Strand = Plus / Minus
Query: 83 gtgtgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgac 142
||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| ||
Sbjct: 427 gtgtgcatcctgaccgagtggaacgagttcaaggagctggactcccagaagatcttcaac 368
Query: 143 aacatgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttg 202
|||||||||||||| ||||||||| ||||||| |||||| || || || | || ||| |
Sbjct: 367 aacatgcagaagccggccttcgtcntcgacgggcgcaacgtcgtcaacgccgacaagctc 308
Query: 203 agggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggac 262
|||||||| |||||||| |||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 307 agggagattggcttcattgtctactccatcggcaagccgctcgatgcgtggctcaaggac 248
Query: 263 atgcccgcggtcgc 276
||||||||| ||||
Sbjct: 247 atgcccgcgatcgc 234
>gb|CB880990.1|CB880990 HM08H04w HM Hordeum vulgare subsp. vulgare cDNA clone HM08H04
3-PRIME, mRNA sequence
Length = 528
Score = 194 bits (98), Expect = 2e-048
Identities = 134/146 (91%)
Strand = Plus / Minus
Query: 139 cgacaacatgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaa 198
|||||||||||||||||| |||||||||||||||||||||||| || ||||| | |||||
Sbjct: 528 cgacaacatgcagaagccggccttcgtcttcgacggccgcaacgtcgtcgacgccgagaa 469
Query: 199 gttgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaa 258
| | |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 468 gctcagggagatcggcttcatcgtctactccatcggcaagccgctcgacgggtggctcaa 409
Query: 259 ggacatgcccgcggtcgcttaattcg 284
|||||||||||| ||||| |||||||
Sbjct: 408 ggacatgcccgccgtcgcctaattcg 383
>gb|AL500306.1|AL500306 AL500306 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06A01r 3', mRNA sequence
Length = 395
Score = 182 bits (92), Expect = 9e-045
Identities = 128/140 (91%)
Strand = Plus / Minus
Query: 145 catgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgag 204
|||||||||||| |||||||||||||||||||||||| || ||||| | |||||| | ||
Sbjct: 395 catgcagaagccggccttcgtcttcgacggccgcaacgtcgtcgacgccgagaagctcag 336
Query: 205 ggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacat 264
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 335 ggagatcggcttcatcgtctactccatcggcaagccgctcgacgggtggctcaaggacat 276
Query: 265 gcccgcggtcgcttaattcg 284
|||||| ||||| |||||||
Sbjct: 275 gcccgccgtcgcctaattcg 256
>gb|BI959767.1|BI959767 HVSMEn0021F18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021F18f, mRNA sequence
Length = 647
Score = 182 bits (92), Expect = 9e-045
Identities = 177/204 (86%), Gaps = 1/204 (0%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 365 gtgtgggacgcgtacgaggccaccaagggggcccatgccgtgtgcatcctgaccgagtgg 424
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
||||||||||| ||||||||||| ||||||||| ||||||||| |||||| ||||||
Sbjct: 425 aacgagttcaaggagctggactaccataagatcttcaacaacatgccgaagccggccttc 484
Query: 164 gtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtc 223
|||||| |||| |||||| || || || | || ||| | |||||||| |||||||| | |
Sbjct: 485 gtcttctacgggcgcaacgtcgtcaacgccgacaagctcagggagattggcttcattggc 544
Query: 224 tactccat-cggcaagccgctcga 246
|||||||| | |||||||||||||
Sbjct: 545 tactccatcccgcaagccgctcga 568
>gb|BQ462810.1|BQ462810 HI02B08r HI Hordeum vulgare subsp. vulgare cDNA clone HI02B08
5-PRIME, mRNA sequence
Length = 634
Score = 180 bits (91), Expect = 4e-044
Identities = 140/155 (90%), Gaps = 1/155 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| |||||||||||||| | || ||||||| | ||||||||||||||||||
Sbjct: 480 ctgcagccgacgagccccacggccgtgaagcaggtgagcgtggtgtgggacgcgtacgag 539
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | |||
Sbjct: 540 gccaccaagggcgcccacgccgtgtgcatcctcaccgagtggaacgagttcaagtcgctg 599
Query: 122 gactaccagaagatcttcgacaacatgcagaagcc 156
|||||| ||||||||||||||||||||||||||||
Sbjct: 600 gactacaagaagatcttcgacaacatgcagaagcc 634
>gb|CB858524.1|CB858524 HI07F20w HI Hordeum vulgare subsp. vulgare cDNA clone HI07F20
3-PRIME, mRNA sequence
Length = 504
Score = 176 bits (89), Expect = 6e-043
Identities = 125/137 (91%)
Strand = Plus / Minus
Query: 148 gcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgaggga 207
||||||||| |||||||||||||||||||||||| || ||||| | |||||| | |||||
Sbjct: 504 gcagaagccggccttcgtcttcgacggccgcaacgtcgtcgacgccgagaagctcaggga 445
Query: 208 gatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 444 gatcggcttcatcgtctactccatcggcaagccgctcgacgggtggctcaaggacatgcc 385
Query: 268 cgcggtcgcttaattcg 284
||| ||||| |||||||
Sbjct: 384 cgccgtcgcctaattcg 368
>gb|BQ767763.1|BQ767763 EBro08_SQ009_D22_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_D22 5', mRNA sequence
Length = 539
Score = 172 bits (87), Expect = 9e-042
Identities = 145/163 (88%), Gaps = 1/163 (0%)
Strand = Plus / Plus
Query: 3 ctgcagccg-cgagccccacggccattaaacaggtgaactgcgtgtgggacgcgtacgag 61
||||||||| |||||||||||||| | || || |||| | ||||||||||||||||||
Sbjct: 377 ctgcagccgacgagccccacggccgtgaagcaagtgagcgtggtgtgggacgcgtacgag 436
Query: 62 gccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagaccctg 121
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | |||
Sbjct: 437 gccaccaagggcgcccacgccgtgtgcatcctcaccgagtggaacgagttcaagtcgctg 496
Query: 122 gactaccagaagatcttcgacaacatgcagaagcccgccttcg 164
|||||| |||||||||||||||||||||| ||||| |||||||
Sbjct: 497 gactacaagaagatcttcgacaacatgcataagccggccttcg 539
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,586
Number of Sequences: 312970
Number of extensions: 60586
Number of successful extensions: 20249
Number of sequences better than 0.5: 95
Number of HSP's better than 0.5 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20097
Number of HSP's gapped (non-prelim): 125
length of query: 616
length of database: 175,134,539
effective HSP length: 19
effective length of query: 597
effective length of database: 169,188,109
effective search space: 101005301073
effective search space used: 101005301073
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)