BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405117.2.2
(800 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF629710.1|BF629710 HVSMEb0013D21f Hordeum vulgare seedl... 204 3e-051
gb|BU971930.1|BU971930 HB20B14r BC Hordeum vulgare subsp. v... 202 1e-050
emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotra... 196 8e-049
gb|BG300583.1|BG300583 HVSMEb0017J11f Hordeum vulgare seedl... 194 3e-048
gb|BG310036.1|BG310036 HVSMEc0016C04f Hordeum vulgare seedl... 192 1e-047
gb|BF626811.2|BF626811 HVSMEb0001G10f Hordeum vulgare seedl... 184 3e-045
gb|BQ468552.1|BQ468552 HM01J07T HM Hordeum vulgare subsp. v... 184 3e-045
gb|CB877507.1|CB877507 HP05D02T HP Hordeum vulgare subsp. v... 178 2e-043
gb|AL500460.1|AL500460 AL500460 Hordeum vulgare Barke etiol... 176 7e-043
gb|BQ469314.1|BQ469314 HM04C11r HM Hordeum vulgare subsp. v... 176 7e-043
gb|AW982755.3|AW982755 HVSMEg0004C03f Hordeum vulgare pre-a... 168 2e-040
gb|BE422297.1|BE422297 HWM022cF.08r ITEC HWM Barley Leaf Li... 155 3e-036
gb|AL500168.1|AL500168 AL500168 Hordeum vulgare Barke etiol... 155 3e-036
gb|BF626739.2|BF626739 HVSMEb0001D16f Hordeum vulgare seedl... 155 3e-036
gb|BG309440.1|BG309440 HVSMEc0010E08f Hordeum vulgare seedl... 153 1e-035
gb|CB858845.1|CB858845 HI08H24w HI Hordeum vulgare subsp. v... 147 7e-034
gb|BF627738.2|BF627738 HVSMEb0005K17f Hordeum vulgare seedl... 141 4e-032
gb|BQ661581.1|BQ661581 HM04C11u HM Hordeum vulgare subsp. v... 141 4e-032
gb|BG300595.1|BG300595 HVSMEb0017J24f Hordeum vulgare seedl... 139 2e-031
gb|BQ665345.1|BQ665345 HX03B16u HX Hordeum vulgare subsp. v... 119 1e-025
gb|BF631278.2|BF631278 HVSMEb0015H17f Hordeum vulgare seedl... 115 2e-024
gb|BQ759379.1|BQ759379 EBpi01_SQ004_H12_R pistil, 1 DPA, no... 115 2e-024
gb|BF260656.2|BF260656 HVSMEf0022J12f Hordeum vulgare seedl... 113 9e-024
gb|BF257539.3|BF257539 HVSMEf0013D01f Hordeum vulgare seedl... 111 4e-023
gb|BQ470845.1|BQ470845 HX04D09r HX Hordeum vulgare subsp. v... 111 4e-023
gb|BQ660118.1|BQ660118 HI01A16w HI Hordeum vulgare subsp. v... 111 4e-023
gb|BI778475.2|BI778475 EBro07_SQ003_G13_R root, 3 week, red... 111 4e-023
gb|BU988965.1|BU988965 HF19F01r HF Hordeum vulgare subsp. v... 111 4e-023
emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotra... 111 4e-023
gb|AL500052.1|AL500052 AL500052 Hordeum vulgare Barke etiol... 105 2e-021
gb|AL500119.1|AL500119 AL500119 Hordeum vulgare Barke etiol... 105 2e-021
gb|AL500129.1|AL500129 AL500129 Hordeum vulgare Barke etiol... 105 2e-021
gb|AL500197.1|AL500197 AL500197 Hordeum vulgare Barke etiol... 100 1e-019
gb|BG300865.1|BG300865 HVSMEb0018L19f Hordeum vulgare seedl... 100 1e-019
gb|BI958106.1|BI958106 HVSMEn0013G22f Hordeum vulgare rachi... 100 1e-019
gb|BE455947.3|BE455947 HVSMEg0017N10f Hordeum vulgare pre-a... 98 5e-019
gb|BM370804.2|BM370804 EBro04_SQ002_F05_R root, 3 week, sal... 92 3e-017
gb|AL450913.1|AL450913 AL450913 Hordeum vulgare Barke etiol... 90 1e-016
gb|AL499877.1|AL499877 AL499877 Hordeum vulgare Barke etiol... 88 5e-016
gb|BI777946.1|BI777946 EBro07_SQ001_H07_R root, 3 week, red... 88 5e-016
gb|AV914498.1|AV914498 AV914498 K. Sato unpublished cDNA li... 88 5e-016
gb|AV915915.1|AV915915 AV915915 K. Sato unpublished cDNA li... 88 5e-016
gb|AV919562.1|AV919562 AV919562 K. Sato unpublished cDNA li... 88 5e-016
gb|AV926405.1|AV926405 AV926405 K. Sato unpublished cDNA li... 88 5e-016
gb|AV931287.1|AV931287 AV931287 K. Sato unpublished cDNA li... 88 5e-016
gb|BM816264.1|BM816264 HB01H02_T3.ab1 HB Hordeum vulgare su... 88 5e-016
gb|BM816265.1|BM816265 HB02B10_T3.ab1 HB Hordeum vulgare su... 88 5e-016
gb|BJ465036.1|BJ465036 BJ465036 K. Sato unpublished cDNA li... 88 5e-016
gb|BJ468104.1|BJ468104 BJ468104 K. Sato unpublished cDNA li... 88 5e-016
gb|BQ471752.1|BQ471752 HV03F21r HV Hordeum vulgare subsp. v... 88 5e-016
gb|BM100605.2|BM100605 EBma01_SQ005_L10_R maternal, 4 DPA, ... 88 5e-016
gb|CA026314.1|CA026314 HZ55I22r HZ Hordeum vulgare subsp. v... 88 5e-016
gb|CB882213.1|CB882213 HL01D12w HL Hordeum vulgare subsp. v... 88 5e-016
gb|CB882375.1|CB882375 HL01L03w HL Hordeum vulgare subsp. v... 88 5e-016
emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan tr... 88 5e-016
gb|AJ460709.1|AJ460709 AJ460709 S00002 Hordeum vulgare subs... 80 1e-013
gb|BQ468019.1|BQ468019 HR01K20r HR Hordeum vulgare subsp. v... 80 1e-013
gb|BQ660837.1|BQ660837 HI05L07u HI Hordeum vulgare subsp. v... 80 1e-013
gb|BI776827.2|BI776827 EBpi03_SQ001_B04_R pistil, 4 DPA, no... 80 1e-013
gb|CA001491.1|CA001491 HS17J24u HS Hordeum vulgare subsp. v... 80 1e-013
gb|BQ662795.1|BQ662795 HS04D13u HS Hordeum vulgare subsp. v... 76 2e-012
gb|CD663930.1|CD663930 UCRHV18_07ae11_b1 Drought-stressed D... 76 2e-012
gb|AL501095.1|AL501095 AL501095 Hordeum vulgare Barke roots... 74 8e-012
gb|AJ460708.1|AJ460708 AJ460708 S00002 Hordeum vulgare subs... 66 2e-009
gb|BF622776.2|BF622776 HVSMEa0008K20f Hordeum vulgare seedl... 62 3e-008
gb|BQ467526.1|BQ467526 HS04B01r HS Hordeum vulgare subsp. v... 62 3e-008
gb|BQ662762.1|BQ662762 HS04B01u HS Hordeum vulgare subsp. v... 62 3e-008
gb|CB877582.1|CB877582 HP05H06T HP Hordeum vulgare subsp. v... 62 3e-008
gb|BU995150.1|BU995150 HM09F19r HM Hordeum vulgare subsp. v... 58 5e-007
gb|CA016017.1|CA016017 HV11B18u HV Hordeum vulgare subsp. v... 58 5e-007
gb|CB876191.1|CB876191 HX10I22w HX Hordeum vulgare subsp. v... 58 5e-007
gb|CB878261.1|CB878261 HP07O06T HP Hordeum vulgare subsp. v... 58 5e-007
gb|CB881291.1|CB881291 HM09F19w HM Hordeum vulgare subsp. v... 58 5e-007
gb|BF256789.2|BF256789 HVSMEf0011A08f Hordeum vulgare seedl... 56 2e-006
gb|BQ663388.1|BQ663388 HU02G22u HU Hordeum vulgare subsp. v... 50 1e-004
gb|BU974709.1|BU974709 HB28N13r BC Hordeum vulgare subsp. v... 50 1e-004
gb|CK125318.1|CK125318 BES1824107k21 BES1824 Hordeum vulgar... 50 1e-004
gb|AL500467.1|AL500467 AL500467 Hordeum vulgare Barke etiol... 46 0.002
gb|BU997037.1|BU997037 HI06L03r HI Hordeum vulgare subsp. v... 46 0.002
gb|CB858350.1|CB858350 HI06L03w HI Hordeum vulgare subsp. v... 46 0.002
gb|CB877410.1|CB877410 HP04M22T HP Hordeum vulgare subsp. v... 46 0.002
gb|CB877798.1|CB877798 HP06D15T HP Hordeum vulgare subsp. v... 46 0.002
gb|CB878098.1|CB878098 HP07F05T HP Hordeum vulgare subsp. v... 46 0.002
gb|BF626216.3|BF626216 HVSMEa0016H19f Hordeum vulgare seedl... 44 0.007
gb|BE196676.1|BE196676 HVSMEh0092P08f Hordeum vulgare 5-45 ... 44 0.007
gb|BJ474980.1|BJ474980 BJ474980 K. Sato unpublished cDNA li... 44 0.007
gb|BQ468353.1|BQ468353 HM01A11T HM Hordeum vulgare subsp. v... 44 0.007
gb|BM372869.2|BM372869 EBma04_SQ002_D15_R maternal, 10 DPA,... 44 0.007
gb|BQ753362.1|BQ753362 EBan01_SQ004_A21_R anther, yellow st... 44 0.007
gb|BQ763552.1|BQ763552 EBro02_SQ008_B23_R root, 3 week, hyd... 44 0.007
gb|BU994399.1|BU994399 HM06P03r HM Hordeum vulgare subsp. v... 44 0.007
gb|BU999530.1|BU999530 HI14M15r HI Hordeum vulgare subsp. v... 44 0.007
gb|CA004100.1|CA004100 HS16I18r HS Hordeum vulgare subsp. v... 44 0.007
gb|CA016169.1|CA016169 HV09N13u HV Hordeum vulgare subsp. v... 44 0.007
gb|CA019866.1|CA019866 HV13H20r HV Hordeum vulgare subsp. v... 44 0.007
gb|CA024697.1|CA024697 HZ50A20r HZ Hordeum vulgare subsp. v... 44 0.007
gb|CA025060.1|CA025060 HZ51B17r HZ Hordeum vulgare subsp. v... 44 0.007
gb|CB880569.1|CB880569 HM06P03w HM Hordeum vulgare subsp. v... 44 0.007
gb|CV057350.1|CV057350 BNEL26g9 Barley EST endosperm librar... 44 0.007
gb|CV059534.1|CV059534 BNEL49b5 Barley EST endosperm librar... 44 0.007
gb|CV059660.1|CV059660 BNEL4E7 Barley EST endosperm library... 44 0.007
gb|CV062079.1|CV062079 BNEL76b11 Barley EST endosperm libra... 44 0.007
gb|CK124046.1|CK124046 BES1824106k08 BES1824 Hordeum vulgar... 44 0.007
gb|BF621128.2|BF621128 HVSMEa0004D22f Hordeum vulgare seedl... 42 0.028
gb|BF257690.2|BF257690 HVSMEf0013J17f Hordeum vulgare seedl... 42 0.028
gb|BF261405.2|BF261405 HV_CEa0001C17f Hordeum vulgare seedl... 42 0.028
gb|BI959840.1|BI959840 HVSMEn0021P12f Hordeum vulgare rachi... 42 0.028
gb|BM816747.1|BM816747 HB02E01_T3.ab1 HB Hordeum vulgare su... 42 0.028
gb|AJ433500.1|AJ433500 AJ433500 S00002 Hordeum vulgare subs... 42 0.028
gb|AJ433692.1|AJ433692 AJ433692 S00002 Hordeum vulgare subs... 42 0.028
gb|BQ740141.1|BQ740141 HC109B01 HC Hordeum vulgare subsp. v... 42 0.028
gb|CA026923.1|CA026923 HZ57F20r HZ Hordeum vulgare subsp. v... 42 0.028
gb|CB875146.1|CB875146 HX07G17w HX Hordeum vulgare subsp. v... 42 0.028
gb|BE420888.1|BE420888 HWM003.F01 ITEC HWM Barley Leaf Libr... 40 0.11
gb|AL506809.1|AL506809 AL506809 Hordeum vulgare Barke devel... 40 0.11
gb|BG299978.1|BG299978 HVSMEa0022N04f Hordeum vulgare seedl... 40 0.11
gb|BG300881.1|BG300881 HVSMEb0018M18f Hordeum vulgare seedl... 40 0.11
gb|BF255206.2|BF255206 HVSMEf0006D21f Hordeum vulgare seedl... 40 0.11
gb|BI956709.1|BI956709 HVSMEn0004O06f Hordeum vulgare rachi... 40 0.11
gb|BF262634.1|BF262634 HV_CEa0004I10f Hordeum vulgare seedl... 40 0.11
gb|BF263267.2|BF263267 HV_CEa0006E19f Hordeum vulgare seedl... 40 0.11
gb|BF268125.2|BF268125 HV_CEa0019P10f Hordeum vulgare seedl... 40 0.11
gb|BI958692.1|BI958692 HVSMEn0016E01f Hordeum vulgare rachi... 40 0.11
gb|BI959504.1|BI959504 HVSMEn0019O24f Hordeum vulgare rachi... 40 0.11
gb|BE194828.3|BE194828 HVSMEh0087B22f Hordeum vulgare 5-45 ... 40 0.11
gb|AV919560.1|AV919560 AV919560 K. Sato unpublished cDNA li... 40 0.11
gb|AV922775.1|AV922775 AV922775 K. Sato unpublished cDNA li... 40 0.11
gb|AV925813.1|AV925813 AV925813 K. Sato unpublished cDNA li... 40 0.11
gb|AV927029.1|AV927029 AV927029 K. Sato unpublished cDNA li... 40 0.11
gb|AV927496.1|AV927496 AV927496 K. Sato unpublished cDNA li... 40 0.11
gb|AV927618.1|AV927618 AV927618 K. Sato unpublished cDNA li... 40 0.11
gb|AV929296.1|AV929296 AV929296 K. Sato unpublished cDNA li... 40 0.11
gb|AV930447.1|AV930447 AV930447 K. Sato unpublished cDNA li... 40 0.11
gb|AV930745.1|AV930745 AV930745 K. Sato unpublished cDNA li... 40 0.11
gb|AV930767.1|AV930767 AV930767 K. Sato unpublished cDNA li... 40 0.11
gb|AV931936.1|AV931936 AV931936 K. Sato unpublished cDNA li... 40 0.11
gb|BJ446899.1|BJ446899 BJ446899 K. Sato unpublished cDNA li... 40 0.11
gb|BJ446906.1|BJ446906 BJ446906 K. Sato unpublished cDNA li... 40 0.11
gb|BJ447412.1|BJ447412 BJ447412 K. Sato unpublished cDNA li... 40 0.11
gb|BJ447562.1|BJ447562 BJ447562 K. Sato unpublished cDNA li... 40 0.11
gb|BJ450401.1|BJ450401 BJ450401 K. Sato unpublished cDNA li... 40 0.11
gb|BJ454898.1|BJ454898 BJ454898 K. Sato unpublished cDNA li... 40 0.11
gb|BJ455314.1|BJ455314 BJ455314 K. Sato unpublished cDNA li... 40 0.11
gb|BJ457816.1|BJ457816 BJ457816 K. Sato unpublished cDNA li... 40 0.11
gb|BJ467570.1|BJ467570 BJ467570 K. Sato unpublished cDNA li... 40 0.11
gb|BQ466157.1|BQ466157 HT01L21T HT Hordeum vulgare subsp. v... 40 0.11
gb|BQ469047.1|BQ469047 HM03E06r HM Hordeum vulgare subsp. v... 40 0.11
gb|BM370992.2|BM370992 EBro04_SQ003_C14_R root, 3 week, sal... 40 0.11
gb|BI778106.2|BI778106 EBro07_SQ002_D23_R root, 3 week, red... 40 0.11
gb|CA015631.1|CA015631 HT14O15r HT Hordeum vulgare subsp. v... 40 0.11
dbj|AB005788.1| Hordeum vulgare mRNA for nicotianamine amin... 40 0.11
dbj|AB024006.1| Hordeum vulgare naat-B and naat-A genes for... 40 0.11
emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotra... 40 0.11
gb|BF625623.2|BF625623 HVSMEa0013A14f Hordeum vulgare seedl... 38 0.43
gb|BF625684.2|BF625684 HVSMEa0013D21f Hordeum vulgare seedl... 38 0.43
gb|BF258475.2|BF258475 HVSMEf0015N04f Hordeum vulgare seedl... 38 0.43
gb|BF257981.3|BF257981 HVSMEf0014G13f Hordeum vulgare seedl... 38 0.43
gb|BE603291.3|BE603291 HVSMEh0102P20f Hordeum vulgare 5-45 ... 38 0.43
gb|BG416534.2|BG416534 HVSMEk0012M13f Hordeum vulgare testa... 38 0.43
gb|BQ465761.1|BQ465761 HU04J23r HU Hordeum vulgare subsp. v... 38 0.43
gb|BQ469075.1|BQ469075 HM03E23r HM Hordeum vulgare subsp. v... 38 0.43
gb|BQ470574.1|BQ470574 HX03G05r HX Hordeum vulgare subsp. v... 38 0.43
gb|BQ471226.1|BQ471226 HV01L05T HV Hordeum vulgare subsp. v... 38 0.43
gb|BM369811.2|BM369811 EBem07_SQ004_K23_R embryo, 28 DPA, n... 38 0.43
gb|BM445218.2|BM445218 EBem09_SQ007_M07_R embryo, 1 Day ger... 38 0.43
gb|BI780871.2|BI780871 EBma05_SQ001_E19_R maternal, 12 DPA,... 38 0.43
gb|BM442807.2|BM442807 EBro02_SQ001_F10_R root, 3 week, hyd... 38 0.43
gb|BQ762715.1|BQ762715 EBro02_SQ004_H24_R root, 3 week, hyd... 38 0.43
gb|BU970662.1|BU970662 HB15F02r BC Hordeum vulgare subsp. v... 38 0.43
gb|BU997490.1|BU997490 HI08C11r HI Hordeum vulgare subsp. v... 38 0.43
gb|BU997555.1|BU997555 HI08F08r HI Hordeum vulgare subsp. v... 38 0.43
gb|CA003273.1|CA003273 HS09O21r HS Hordeum vulgare subsp. v... 38 0.43
gb|CA011718.1|CA011718 HT03F18r HT Hordeum vulgare subsp. v... 38 0.43
gb|CA015035.1|CA015035 HT13B07r HT Hordeum vulgare subsp. v... 38 0.43
gb|CA024443.1|CA024443 HZ49F07r HZ Hordeum vulgare subsp. v... 38 0.43
gb|CA024455.1|CA024455 HZ49F19r HZ Hordeum vulgare subsp. v... 38 0.43
gb|CA024540.1|CA024540 HZ49J13r HZ Hordeum vulgare subsp. v... 38 0.43
>gb|BF629710.1|BF629710 HVSMEb0013D21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013D21f, mRNA sequence
Length = 830
Score = 204 bits (103), Expect = 3e-051
Identities = 190/218 (87%), Gaps = 1/218 (0%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| ||||||||| | |||||| | ||||||||||||| |||||| ||
Sbjct: 184 gatcagggacttcaagaacctggaggggaaggggatcgcgttccccaagaaccagcccat 243
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
|||||||||||||||||| | |||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 244 gcggctctactccagcctctggaacgccgacgactgggccacgcagggcggccgcgtcaa 303
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgcttg 180
||| |||||||||||||| || ||||||||||| ||||| || |||||||||||||| ||
Sbjct: 304 gaccgactggtcccacgcgccgttctccgcctcttaccgtggcttcaaggccgacgcgtg 363
Query: 181 cntgccg-tcgcgggcggccggacccgctgcggcgcca 217
| || | ||||||||||||| | |||||||||||||
Sbjct: 364 cgtggtgaccgcgggcggccggccgcgctgcggcgcca 401
Score = 137 bits (69), Expect = 6e-031
Identities = 96/105 (91%)
Strand = Plus / Plus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||| || ||||||||||||||||||||||| || ||||| ||||||||||| ||||||
Sbjct: 446 gccggcgagtggtacaaccaggagctggacctgacgctgcaacagcggatgcggtgggtg 505
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgc 366
||| |||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 506 cagagcaattacatgatctacaactactgcactgaccccaagcgc 550
>gb|BU971930.1|BU971930 HB20B14r BC Hordeum vulgare subsp. vulgare cDNA clone HB20B14
5-PRIME, mRNA sequence
Length = 387
Score = 202 bits (102), Expect = 1e-050
Identities = 197/228 (86%), Gaps = 1/228 (0%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| ||||||||| | |||||| | || || ||||||| |||||| ||
Sbjct: 92 gatcagggacttcaagaacctggagggaaaggggatcgccttncccaagaaccagcccat 151
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
|||||||||||||||||| | |||||| ||||||||||| ||||||||||| || || ||
Sbjct: 152 gcggctctactccagcctctggaacgccgacgactgggccacgcagggcggccgggtgaa 211
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgcttg 180
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||| ||
Sbjct: 212 gacggactggtcccacgcgccgttctccgcctcctaccgcggcttcaaggccgacgcgtg 271
Query: 181 cntgccg-tcgcgggcggccggacccgctgcggcgccaccgtcggcac 227
| || | ||||||||| ||| | ||||||||||||| |||||||||
Sbjct: 272 cgtggtgaccgcgggcgggcggcctcgctgcggcgccagcgtcggcac 319
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(XEA)
Length = 1174
Score = 196 bits (99), Expect = 8e-049
Identities = 189/218 (86%), Gaps = 1/218 (0%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| ||||||||| | |||||| | ||||||||||||| |||||| ||
Sbjct: 525 gatcagggacttcaagaacctggaggggaaggggatcgcgttccccaagaaccagcccat 584
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
|||||||||||||||||| | |||||| ||||||||||| |||||||||| ||||||||
Sbjct: 585 gcggctctactccagcctctggaacgccgacgactgggccacgcagggcgcccgcgtcaa 644
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgcttg 180
||| |||||||||||||| || ||||||||||| ||||| || |||||||||||||| ||
Sbjct: 645 gaccgactggtcccacgcgccgttctccgcctcttaccgtggcttcaaggccgacgcgtg 704
Query: 181 cntgccg-tcgcgggcggccggacccgctgcggcgcca 217
| || | ||||||||||||| | |||||||||||||
Sbjct: 705 cgtggtgaccgcgggcggccggccgcgctgcggcgcca 742
Score = 147 bits (74), Expect = 7e-034
Identities = 122/138 (88%)
Strand = Plus / Plus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||| || ||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct: 787 gccggcgagtggtacaaccaggagctggacctgacgctgcagcagcggatgcggtgggta 846
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctc 381
||| |||| ||||||||||||||||||||||| |||||||||||| | ||||| ||
Sbjct: 847 cagagcaattacatgatctacaactactgcactgaccccaagcgcgtcgccaagggcgtc 906
Query: 382 cccgccgagtgctccatg 399
||||||||||||||||||
Sbjct: 907 cccgccgagtgctccatg 924
>gb|BG300583.1|BG300583 HVSMEb0017J11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017J11f, mRNA sequence
Length = 876
Score = 194 bits (98), Expect = 3e-048
Identities = 157/177 (88%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| ||||||||| | |||||| | ||||||||||||| |||||| ||
Sbjct: 519 gatcagggacttcaagaacctggaggggaaggggatcgcgttccccaagaaccagcccat 578
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
|||||||||||||||||| | |||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 579 gcggctctactccagcctctggaacgccgacgactgggccacgcagggcggncgcgtcaa 638
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgc 177
||| |||||||||||||| || ||||||||||| ||||| || ||||||||||||||
Sbjct: 639 gaccgactggtcccacgcgccgttctccgcctcttaccgtggcttcaaggccgacgc 695
>gb|BG310036.1|BG310036 HVSMEc0016C04f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016C04f, mRNA sequence
Length = 831
Score = 192 bits (97), Expect = 1e-047
Identities = 157/177 (88%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| ||||||||| | |||||| | ||||||||||||| |||||| ||
Sbjct: 516 gatcagggacttcaagaacctggaggggaaggggatcgcgttccccaagaaccagcccat 575
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
|||||||||||||||||| | |||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 576 gcggctctactccagcctctggaacgccgacgactgggccacgcagggcggccgcgtcaa 635
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgc 177
||| |||||||||||||| || ||||||||||| ||||| || ||||||||||||||
Sbjct: 636 gaccgactggtcccacgcgccgttctccgcctcttaccgtggcttcaaggccgacgc 692
>gb|BF626811.2|BF626811 HVSMEb0001G10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0001G10f, mRNA sequence
Length = 841
Score = 184 bits (93), Expect = 3e-045
Identities = 165/188 (87%), Gaps = 1/188 (0%)
Strand = Plus / Plus
Query: 41 ttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgactgggcg 100
|||||||||| |||||| |||||||||||||||||||| | |||||| |||||||||||
Sbjct: 65 ttccccaagaaccagcccatgcggctctactccagcctctggaacgccgacgactgggca 124
Query: 101 acgcagggcgggcgcgtcaagacggactggtcccacgcccccttctccgcctcctaccgc 160
||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct: 125 acgcagggcggccgcgtcaagacggactggtcccacgccccgttctcggcctcctatcgc 184
Query: 161 gggttcaaggccgacgcttgcntgccg-tcgcgggcggccggacccgctgcggcgccacc 219
|| |||||||| ||||| ||| || | ||||||||| ||| | | ||||||||||| |
Sbjct: 185 ggcttcaaggcagacgcgtgcgtggtgaccgcgggcgggcggcctcactgcggcgccagc 244
Query: 220 gtcggcac 227
||||||||
Sbjct: 245 gtcggcac 252
Score = 147 bits (74), Expect = 7e-034
Identities = 122/138 (88%)
Strand = Plus / Plus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||| || ||||||||||||||||||||||| || | ||||||||||||||| |||||
Sbjct: 278 gccggcgagtggtacaaccaggagctggacctgacgcggcagcagcggatgcggtgggta 337
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctc 381
||| |||| ||||||||||||||||||||||||||||||||| | | | |||||| ||
Sbjct: 338 cagagcaactacatgatctacaactactgcaccgaccccaagaggttcgctcagggcgtc 397
Query: 382 cccgccgagtgctccatg 399
||||||||||||||||||
Sbjct: 398 cccgccgagtgctccatg 415
>gb|BQ468552.1|BQ468552 HM01J07T HM Hordeum vulgare subsp. vulgare cDNA clone HM01J07
5-PRIME, mRNA sequence
Length = 491
Score = 184 bits (93), Expect = 3e-045
Identities = 165/188 (87%), Gaps = 1/188 (0%)
Strand = Plus / Plus
Query: 41 ttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgactgggcg 100
|||||||||| |||||| |||||||||||||||||||| | |||||| |||||||||||
Sbjct: 177 ttccccaagaaccagcccatgcggctctactccagcctctggaacgccgacgactgggca 236
Query: 101 acgcagggcgggcgcgtcaagacggactggtcccacgcccccttctccgcctcctaccgc 160
||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct: 237 acgcagggcggccgcgtcaagacggactggtcccacgccccgttctcggcctcctatcgc 296
Query: 161 gggttcaaggccgacgcttgcntgccg-tcgcgggcggccggacccgctgcggcgccacc 219
|| |||||||| ||||| ||| || | ||||||||| ||| | | ||||||||||| |
Sbjct: 297 ggcttcaaggcagacgcgtgcgtggtgaccgcgggcgggcggcctcactgcggcgccagc 356
Query: 220 gtcggcac 227
||||||||
Sbjct: 357 gtcggcac 364
Score = 131 bits (66), Expect = 4e-029
Identities = 93/102 (91%)
Strand = Plus / Plus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||| || ||||||||||||||||||||||| || | ||||||||||||||| |||||
Sbjct: 390 gccggcgagtggtacaaccaggagctggacctgacgcggcagcagcggatgcggtgggta 449
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaag 363
||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 450 cagagcaactacatgatctacaactactgcaccgaccccaag 491
>gb|CB877507.1|CB877507 HP05D02T HP Hordeum vulgare subsp. vulgare cDNA clone HP05D02
5-PRIME, mRNA sequence
Length = 632
Score = 178 bits (90), Expect = 2e-043
Identities = 164/188 (87%), Gaps = 1/188 (0%)
Strand = Plus / Plus
Query: 41 ttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgactgggcg 100
|||||||||| |||||| |||||||||||||||||||| | |||||| |||||||||||
Sbjct: 315 ttccccaagaaccagcccatgcggctctactccagcctctggaacgccgacgactgggca 374
Query: 101 acgcagggcgggcgcgtcaagacggactggtcccacgcccccttctccgcctcctaccgc 160
||||||||||| ||||||||||||||||||||||||||||| ||||| | |||||| |||
Sbjct: 375 acgcagggcggccgcgtcaagacggactggtcccacgccccgttctcggnctcctatcgc 434
Query: 161 gggttcaaggccgacgcttgcntgccg-tcgcgggcggccggacccgctgcggcgccacc 219
|| |||||||| ||||| ||| || | ||||||||| ||| | | ||||||||||| |
Sbjct: 435 ggcttcaaggcagacgcgtgcgtggtgaccgcgggcgggcggcctcactgcggcgccagc 494
Query: 220 gtcggcac 227
||||||||
Sbjct: 495 gtcggcac 502
Score = 127 bits (64), Expect = 6e-028
Identities = 91/100 (91%)
Strand = Plus / Plus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||| || ||||||||||||||||||||||| || | ||||||||||||||| |||||
Sbjct: 528 gccggcgagtggtacaaccaggagctggacctgacgcggcagcagcggatgcggtgggta 587
Query: 322 cagcgcaagtacatgatctacaactactgcaccgacccca 361
||| |||| |||||||||||||||||||||||||||||||
Sbjct: 588 cagagcaactacatgatctacaactactgcaccgacccca 627
>gb|AL500460.1|AL500460 AL500460 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06L16r 3', mRNA sequence
Length = 700
Score = 176 bits (89), Expect = 7e-043
Identities = 155/177 (87%)
Strand = Plus / Minus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| | ||| ||||| | |||||| | || |||||||||| |||||| ||
Sbjct: 251 gatcagggacttcaggaacatggagggaaaggggatcgccttccccaagaaccagcctat 192
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
|||||| ||||||||||| | |||||| |||||||||||||| ||||| || ||||||||
Sbjct: 191 gcggctgtactccagcctctggaacgccgacgactgggcgacacagggtggccgcgtcaa 132
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgc 177
||| |||||||||||||| || || ||||||||||||||||| ||||||||||||||
Sbjct: 131 gaccgactggtcccacgctccgttttccgcctcctaccgcggcttcaaggccgacgc 75
>gb|BQ469314.1|BQ469314 HM04C11r HM Hordeum vulgare subsp. vulgare cDNA clone HM04C11
5-PRIME, mRNA sequence
Length = 604
Score = 176 bits (89), Expect = 7e-043
Identities = 155/177 (87%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| | ||| ||||| | |||||| | || |||||||||| |||||| ||
Sbjct: 57 gatcagggacttcaggaacatggagggaaaggggatcgccttccccaagaaccagcctat 116
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
|||||| ||||||||||| | |||||| |||||||||||||| ||||| || ||||||||
Sbjct: 117 gcggctgtactccagcctctggaacgccgacgactgggcgacacagggtggccgcgtcaa 176
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgc 177
||| |||||||||||||| || || ||||||||||||||||| ||||||||||||||
Sbjct: 177 gaccgactggtcccacgctccgttttccgcctcctaccgcggcttcaaggccgacgc 233
Score = 119 bits (60), Expect = 1e-025
Identities = 114/132 (86%)
Strand = Plus / Plus
Query: 268 gactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtgcagcgc 327
|||||||||||||| |||||||| || || | ||||||||| ||||| ||||||||| ||
Sbjct: 325 gactggtacaaccaagagctggatcttacgcggcagcagcgcatgcgttgggtgcagagc 384
Query: 328 aagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctccccgcc 387
|| ||||||||||||||||||||||| |||||||||||| | ||||| |||| |||
Sbjct: 385 aattacatgatctacaactactgcactgaccccaagcgcgtcgccaagggcgtccctgcc 444
Query: 388 gagtgctccatg 399
||||||||||||
Sbjct: 445 gagtgctccatg 456
>gb|AW982755.3|AW982755 HVSMEg0004C03f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004C03f, mRNA sequence
Length = 556
Score = 168 bits (85), Expect = 2e-040
Identities = 154/177 (87%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| | ||| ||||| | |||||| | || |||||||||| |||||| ||
Sbjct: 246 gatcagggacttcaggaacatggagggaaaggggatcgccttccccaagaaccagcctat 305
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
|||||| ||||||||||| | |||||| |||||||||||||| ||||| || ||||||||
Sbjct: 306 gcggctgtactccagcctctggaacgccgacgactgggcgacacagggtggccgcgtcaa 365
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgc 177
||| |||||||||||||| || || ||||||||||||||||| ||||| ||||||||
Sbjct: 366 gaccgactggtcccacgctccgttttccgcctcctaccgcggcttcaaagccgacgc 422
>gb|BE422297.1|BE422297 HWM022cF.08r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM022cF.08, mRNA sequence
Length = 1394
Score = 155 bits (78), Expect = 3e-036
Identities = 123/138 (89%)
Strand = Plus / Plus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||| || ||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct: 145 gccggcgagtggtacaaccaggagctggacctgacgctgcagcagcggatgcggtgggtg 204
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctc 381
||| |||| ||||||||||||||||||||||| |||||||||||| | ||||| ||
Sbjct: 205 cagagcaattacatgatctacaactactgcactgaccccaagcgcgtcgccaagggcgtc 264
Query: 382 cccgccgagtgctccatg 399
||||||||||||||||||
Sbjct: 265 cccgccgagtgctccatg 282
>gb|AL500168.1|AL500168 AL500168 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK05D18r 3', mRNA sequence
Length = 521
Score = 155 bits (78), Expect = 3e-036
Identities = 123/138 (89%)
Strand = Plus / Plus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||| || ||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct: 146 gccggcgagtggtacaaccaggagctggacctgacgctgcagcagcggatgcggtgggtg 205
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctc 381
||| |||| ||||||||||||||||||||||| |||||||||||| | ||||| ||
Sbjct: 206 cagagcaattacatgatctacaactactgcactgaccccaagcgcgtcgccaagggcgtc 265
Query: 382 cccgccgagtgctccatg 399
||||||||||||||||||
Sbjct: 266 cccgccgagtgctccatg 283
Score = 83.8 bits (42), Expect = 8e-015
Identities = 87/101 (86%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 118 caagacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgc 177
|||||| |||||||||||||| || ||||||||||| ||||| || ||||||||||||||
Sbjct: 1 caagaccgactggtcccacgcgccgttctccgcctcttaccgtggcttcaaggccgacgc 60
Query: 178 ttgcntgccg-tcgcgggcggccggacccgctgcggcgcca 217
||| || | ||||||||||||| | |||||||||||||
Sbjct: 61 gtgcgtggtgaccgcgggcggccggccgcgctgcggcgcca 101
>gb|BF626739.2|BF626739 HVSMEb0001D16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0001D16f, mRNA sequence
Length = 844
Score = 155 bits (78), Expect = 3e-036
Identities = 148/169 (87%), Gaps = 2/169 (1%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| ||||||||| | |||||| | |||| |||||||| |||||| ||
Sbjct: 531 gatcagggacttcaagaacctggaggggaaggggatcgcgtnccccaagacccagcc-at 589
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
|||||||||||||||||| | |||||| ||||||||||| ||||||||||||||||||||
Sbjct: 590 gcggctctactccagcctctggaacgccgacgactgggccacgcagggcgggcgcgtcaa 649
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgggttcaag 169
||| ||||||||||||| | | ||||||||||| ||||| || ||||||
Sbjct: 650 gaccgactggtcccacg-cgcgttctccgcctcttaccgtggcttcaag 697
>gb|BG309440.1|BG309440 HVSMEc0010E08f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0010E08f, mRNA sequence
Length = 788
Score = 153 bits (77), Expect = 1e-035
Identities = 133/152 (87%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| ||||||||| | |||||| | ||||||||||||| |||||| ||
Sbjct: 507 gatcagggacttcaagaacctggaggggaaggggatcgcgttccccaagaaccagcccat 566
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
|||||||||||||| ||| | |||||| ||||||||||| ||||||||||| ||||| ||
Sbjct: 567 gcggctctactccaacctctggaacgccgacgactgggccacgcagggcggncgcgtgaa 626
Query: 121 gacggactggtcccacgcccccttctccgcct 152
||| |||||||||||||| || ||||||||||
Sbjct: 627 gaccgactggtcccacgcgccgttctccgcct 658
>gb|CB858845.1|CB858845 HI08H24w HI Hordeum vulgare subsp. vulgare cDNA clone HI08H24
3-PRIME, mRNA sequence
Length = 488
Score = 147 bits (74), Expect = 7e-034
Identities = 122/138 (88%)
Strand = Plus / Minus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||| || ||||||||||||||||||||||| || | ||||||||||||||| |||||
Sbjct: 392 gccggcgagtggtacaaccaggagctggacctgacgcggcagcagcggatgcggtgggta 333
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctc 381
||| |||| ||||||||||||||||||||||||||||||||| | | | |||||| ||
Sbjct: 332 cagagcaactacatgatctacaactactgcaccgaccccaagaggttcgctcagggcgtc 273
Query: 382 cccgccgagtgctccatg 399
||||||||||||||||||
Sbjct: 272 cccgccgagtgctccatg 255
Score = 38.2 bits (19), Expect = 0.43
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 189 cgcgggcggccggacccgctgcggcgccaccgtcggcac 227
||||||||| ||| | | ||||||||||| |||||||||
Sbjct: 456 cgcgggcgggcggcctcactgcggcgccagcgtcggcac 418
>gb|BF627738.2|BF627738 HVSMEb0005K17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0005K17f, mRNA sequence
Length = 831
Score = 141 bits (71), Expect = 4e-032
Identities = 137/159 (86%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| ||||||||| | |||||| | || |||||||||| |||||| ||
Sbjct: 526 gatcagggacttcaagaacctggagggaaaggggatcgccttccccaagaaccagcccat 585
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
|||||||||||||||||| | |||||| ||||||||||| ||||| ||||| || || ||
Sbjct: 586 gcggctctactccagcctctggaacgccgacgactgggccacgcatggcggccgggtgaa 645
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccg 159
|||||||||||||||||| || ||||||| || ||||||
Sbjct: 646 gacggactggtcccacgcgccgttctccggcttctaccg 684
>gb|BQ661581.1|BQ661581 HM04C11u HM Hordeum vulgare subsp. vulgare cDNA clone HM04C11
3-PRIME, mRNA sequence
Length = 579
Score = 141 bits (71), Expect = 4e-032
Identities = 107/119 (89%)
Strand = Plus / Minus
Query: 59 atgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtc 118
|||||||| ||||||||||| | |||||| |||||||||||||| ||||| || ||||||
Sbjct: 575 atgcggctgtactccagcctctggaacgccgacgactgggcgacacagggtggccgcgtc 516
Query: 119 aagacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgc 177
||||| |||||||||||||| || || ||||||||||||||||| ||||||||||||||
Sbjct: 515 aagaccgactggtcccacgctccgttttccgcctcctaccgcggcttcaaggccgacgc 457
Score = 119 bits (60), Expect = 1e-025
Identities = 114/132 (86%)
Strand = Plus / Minus
Query: 268 gactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtgcagcgc 327
|||||||||||||| |||||||| || || | ||||||||| ||||| ||||||||| ||
Sbjct: 365 gactggtacaaccaagagctggatcttacgcggcagcagcgcatgcgttgggtgcagagc 306
Query: 328 aagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctccccgcc 387
|| ||||||||||||||||||||||| |||||||||||| | ||||| |||| |||
Sbjct: 305 aattacatgatctacaactactgcactgaccccaagcgcgtcgccaagggcgtccctgcc 246
Query: 388 gagtgctccatg 399
||||||||||||
Sbjct: 245 gagtgctccatg 234
>gb|BG300595.1|BG300595 HVSMEb0017J24f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017J24f, mRNA sequence
Length = 872
Score = 139 bits (70), Expect = 2e-031
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||| || ||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct: 385 gccggcgagtggtacaaccaggagctggacctgacgctgcagcagcggatgcggtgggtg 326
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctc 381
||| |||| |||||||| |||||||||||||| ||||||||||| | ||||| ||
Sbjct: 325 cagagcaattacatgatttacaactactgcactgaccccaagcgggtcgccaagggcgtc 266
Query: 382 cccgccgagtgctccatg 399
||||||||||||||||||
Sbjct: 265 cccgccgagtgctccatg 248
Score = 119 bits (60), Expect = 1e-025
Identities = 169/203 (83%), Gaps = 2/203 (0%)
Strand = Plus / Minus
Query: 17 aacctggagagcaagggggtggcgttcccc-aagagccagccgatgcggctctactccag 75
||||||||| | |||||| | ||||||||| |||| |||||| || ||| | || |||||
Sbjct: 632 aacctggaggggaaggggatcgcgttcccccaagaaccagcccattcgggtttaatccag 573
Query: 76 cctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtccca 135
||| | |||| | ||||| ||||| |||||||||| ||||||||||| |||||||||||
Sbjct: 572 cctatggaaccccgacgattgggccacgcagggcgcccgcgtcaagaccgactggtccca 513
Query: 136 cgcccccttctccgcctcctaccgcgggttcaaggccgacgcttgcntgccg-tcgcggg 194
||| || ||||||||||| ||||| || |||||||||||||| ||| || | ||||||
Sbjct: 512 cgcgccgttctccgcctcttaccgtggcttcaaggccgacgcgtgcgtggtgaccgcggg 453
Query: 195 cggccggacccgctgcggcgcca 217
||||||| | |||| ||||||||
Sbjct: 452 cggccggccgcgcttcggcgcca 430
>gb|BQ665345.1|BQ665345 HX03B16u HX Hordeum vulgare subsp. vulgare cDNA clone HX03B16
3-PRIME, mRNA sequence
Length = 469
Score = 119 bits (60), Expect = 1e-025
Identities = 114/132 (86%)
Strand = Plus / Minus
Query: 268 gactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtgcagcgc 327
|||||||||||||| |||||||| || || | ||||||||| ||||| ||||||||| ||
Sbjct: 284 gactggtacaaccaagagctggatcttacgcggcagcagcgcatgcgttgggtgcagagc 225
Query: 328 aagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctccccgcc 387
|| ||||||||||||||||||||||| |||||||||||| | ||||| |||| |||
Sbjct: 224 aattacatgatctacaactactgcactgaccccaagcgcgtcgccaagggcgtccctgcc 165
Query: 388 gagtgctccatg 399
||||||||||||
Sbjct: 164 gagtgctccatg 153
Score = 115 bits (58), Expect = 2e-024
Identities = 85/94 (90%)
Strand = Plus / Minus
Query: 84 acgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgccccct 143
|||| |||||||||||||| ||||| || ||||||||||| |||||||||||||| || |
Sbjct: 469 acgccgacgactgggcgacacagggtggccgcgtcaagaccgactggtcccacgctccgt 410
Query: 144 tctccgcctcctaccgcgggttcaaggccgacgc 177
| ||||||||||||||||| ||||||||||||||
Sbjct: 409 tttccgcctcctaccgcggcttcaaggccgacgc 376
>gb|BF631278.2|BF631278 HVSMEb0015H17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015H17f, mRNA sequence
Length = 768
Score = 115 bits (58), Expect = 2e-024
Identities = 118/138 (85%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| | ||| ||||| | |||||| | || |||||||||| |||||| ||
Sbjct: 444 gatcagggacttcaggaacatggagggaaaggggatcgccttccccaagaaccagcctat 503
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
|||||| ||||||||||| | |||||| ||||||||||||| ||||| || ||||| ||
Sbjct: 504 gcggctgtactccagcctctggaacgccaacgactgggcgacacagggtggccgcgtaaa 563
Query: 121 gacggactggtcccacgc 138
||| ||||||||||||||
Sbjct: 564 gaccgactggtcccacgc 581
>gb|BQ759379.1|BQ759379 EBpi01_SQ004_H12_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ004_H12 5', mRNA sequence
Length = 343
Score = 115 bits (58), Expect = 2e-024
Identities = 91/102 (89%)
Strand = Plus / Plus
Query: 298 ctgcagcagcggatgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgac 357
||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| |||
Sbjct: 8 ctgcagcagcggatgcggtgggtgcagagcaattacatgatctacaactactgcactgac 67
Query: 358 cccaagcgctaccagcagggcctccccgccgagtgctccatg 399
||||||||| | ||||| ||||||||||||||||||||
Sbjct: 68 cccaagcgcgtcgccaagggcgtccccgccgagtgctccatg 109
>gb|BF260656.2|BF260656 HVSMEf0022J12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022J12f, mRNA sequence
Length = 729
Score = 113 bits (57), Expect = 9e-024
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 39 cgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgactggg 98
|||||||||||||||||||||||||||| ||| | ||||||| |||||| ||||||||||
Sbjct: 620 cgttccccaagagccagccgatgcggctgtacgcgagcctgtggaacgccgacgactggg 679
Query: 99 cgacgcagggcgggcgcgtcaagacggactgg 130
| ||||||||||| || |||||||| ||||||
Sbjct: 680 ccacgcagggcggncgggtcaagaccgactgg 711
>gb|BF257539.3|BF257539 HVSMEf0013D01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013D01f, mRNA sequence
Length = 542
Score = 111 bits (56), Expect = 4e-023
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 39 cgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgactggg 98
|||||||||||||||||||||||||||| ||| | ||||||| |||||| ||||||||||
Sbjct: 5 cgttccccaagagccagccgatgcggctgtacgcgagcctgtggaacgccgacgactggg 64
Query: 99 cgacgcagggcgggcgcgtcaagacggactgg 130
| ||||||||||| || |||||||| ||||||
Sbjct: 65 ccacgcagggcggccgggtcaagaccgactgg 96
Score = 79.8 bits (40), Expect = 1e-013
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 310 atgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcg 365
||||| ||||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct: 256 atgcggtgggtgcagaggaagttcatgatctacaactactgcaccgaccccaagcg 311
>gb|BQ470845.1|BQ470845 HX04D09r HX Hordeum vulgare subsp. vulgare cDNA clone HX04D09
5-PRIME, mRNA sequence
Length = 619
Score = 111 bits (56), Expect = 4e-023
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 39 cgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgactggg 98
|||||||||||||||||||||||||||| ||| | ||||||| |||||| ||||||||||
Sbjct: 98 cgttccccaagagccagccgatgcggctgtacgcgagcctgtggaacgccgacgactggg 157
Query: 99 cgacgcagggcgggcgcgtcaagacggactgg 130
| ||||||||||| || |||||||| ||||||
Sbjct: 158 ccacgcagggcggccgggtcaagaccgactgg 189
Score = 79.8 bits (40), Expect = 1e-013
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 310 atgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcg 365
||||| ||||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct: 349 atgcggtgggtgcagaggaagttcatgatctacaactactgcaccgaccccaagcg 404
>gb|BQ660118.1|BQ660118 HI01A16w HI Hordeum vulgare subsp. vulgare cDNA clone HI01A16
3-PRIME, mRNA sequence
Length = 545
Score = 111 bits (56), Expect = 4e-023
Identities = 83/92 (90%)
Strand = Plus / Minus
Query: 39 cgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgactggg 98
|||||||||||||||||||||||||||| ||| | ||||||| |||||| ||||||||||
Sbjct: 522 cgttccccaagagccagccgatgcggctgtacgcgagcctgtggaacgccgacgactggg 463
Query: 99 cgacgcagggcgggcgcgtcaagacggactgg 130
| ||||||||||| || |||||||| ||||||
Sbjct: 462 ccacgcagggcggccgggtcaagaccgactgg 431
Score = 79.8 bits (40), Expect = 1e-013
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 310 atgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcg 365
||||| ||||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct: 271 atgcggtgggtgcagaggaagttcatgatctacaactactgcaccgaccccaagcg 216
>gb|BI778475.2|BI778475 EBro07_SQ003_G13_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ003_G13 5', mRNA sequence
Length = 525
Score = 111 bits (56), Expect = 4e-023
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 39 cgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgactggg 98
|||||||||||||||||||||||||||| ||| | ||||||| |||||| ||||||||||
Sbjct: 340 cgttccccaagagccagccgatgcggctgtacgcgagcctgtggaacgccgacgactggg 399
Query: 99 cgacgcagggcgggcgcgtcaagacggactgg 130
| ||||||||||| || |||||||| ||||||
Sbjct: 400 ccacgcagggcggccgggtcaagaccgactgg 431
>gb|BU988965.1|BU988965 HF19F01r HF Hordeum vulgare subsp. vulgare cDNA clone HF19F01
5-PRIME, mRNA sequence
Length = 444
Score = 111 bits (56), Expect = 4e-023
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 39 cgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgactggg 98
|||||||||||||||||||||||||||| ||| | ||||||| |||||| ||||||||||
Sbjct: 27 cgttccccaagagccagccgatgcggctgtacgcgagcctgtggaacgccgacgactggg 86
Query: 99 cgacgcagggcgggcgcgtcaagacggactgg 130
| ||||||||||| || |||||||| ||||||
Sbjct: 87 ccacgcagggcggccgggtcaagaccgactgg 118
Score = 79.8 bits (40), Expect = 1e-013
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 310 atgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcg 365
||||| ||||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct: 278 atgcggtgggtgcagaggaagttcatgatctacaactactgcaccgaccccaagcg 333
>emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(XEB)
Length = 1226
Score = 111 bits (56), Expect = 4e-023
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 39 cgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgactggg 98
|||||||||||||||||||||||||||| ||| | ||||||| |||||| ||||||||||
Sbjct: 624 cgttccccaagagccagccgatgcggctgtacgcgagcctgtggaacgccgacgactggg 683
Query: 99 cgacgcagggcgggcgcgtcaagacggactgg 130
| ||||||||||| || |||||||| ||||||
Sbjct: 684 ccacgcagggcggccgggtcaagaccgactgg 715
Score = 79.8 bits (40), Expect = 1e-013
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 310 atgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcg 365
||||| ||||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct: 875 atgcggtgggtgcagaggaagttcatgatctacaactactgcaccgaccccaagcg 930
>gb|AL500052.1|AL500052 AL500052 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04L04r 3', mRNA sequence
Length = 523
Score = 105 bits (53), Expect = 2e-021
Identities = 92/105 (87%)
Strand = Plus / Minus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| ||||||||| | |||||| | ||||||||||||| |||||| ||
Sbjct: 105 gatcagggacttcaagaacctggaggggaaggggatcgcgttccccaagaaccagcccat 46
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgca 105
|||||||||||||||||| | |||||| ||||||||||| |||||
Sbjct: 45 gcggctctactccagcctctggaacgccgacgactgggccacgca 1
>gb|AL500119.1|AL500119 AL500119 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04P11r 3', mRNA sequence
Length = 501
Score = 105 bits (53), Expect = 2e-021
Identities = 92/105 (87%)
Strand = Plus / Minus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| ||||||||| | |||||| | ||||||||||||| |||||| ||
Sbjct: 105 gatcagggacttcaagaacctggaggggaaggggatcgcgttccccaagaaccagcccat 46
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgca 105
|||||||||||||||||| | |||||| ||||||||||| |||||
Sbjct: 45 gcggctctactccagcctctggaacgccgacgactgggccacgca 1
>gb|AL500129.1|AL500129 AL500129 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK05A03r 3', mRNA sequence
Length = 439
Score = 105 bits (53), Expect = 2e-021
Identities = 92/105 (87%)
Strand = Plus / Minus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| ||||||||| | |||||| | ||||||||||||| |||||| ||
Sbjct: 105 gatcagggacttcaagaacctggaggggaaggggatcgcgttccccaagaaccagcccat 46
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgca 105
|||||||||||||||||| | |||||| ||||||||||| |||||
Sbjct: 45 gcggctctactccagcctctggaacgccgacgactgggccacgca 1
>gb|AL500197.1|AL500197 AL500197 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK05G07r 3', mRNA sequence
Length = 214
Score = 99.6 bits (50), Expect = 1e-019
Identities = 91/105 (86%)
Strand = Plus / Minus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||| ||| ||||||||| | |||||| | ||||||||||||| |||||| ||
Sbjct: 105 gatcaggganttcaagaacctggaggggaaggggatcgcgttccccaagaaccagcccat 46
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgca 105
|||||||||||||||||| | |||||| ||||||||||| |||||
Sbjct: 45 gcggctctactccagcctctggaacgccgacgactgggccacgca 1
>gb|BG300865.1|BG300865 HVSMEb0018L19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018L19f, mRNA sequence
Length = 607
Score = 99.6 bits (50), Expect = 1e-019
Identities = 86/98 (87%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| ||||||||| | |||||| | ||||||||||||| |||||| ||
Sbjct: 510 gatcagggacttcaagaacctggaggggaaggggatcgcgttccccaagaaccagcccat 569
Query: 61 gcggctctactccagcctgttgaacgcggacgactggg 98
|||||||||||||||||| | |||||| ||||||||||
Sbjct: 570 gcggctctactccagcctctggaacgccgacgactggg 607
>gb|BI958106.1|BI958106 HVSMEn0013G22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013G22f, mRNA sequence
Length = 466
Score = 99.6 bits (50), Expect = 1e-019
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| |||||||| | |||||| | ||||||||||||| |||||| ||
Sbjct: 361 gatcagggacttcaagaacctggaagggaaggggatcgcgttccccaagaaccagcccat 420
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcag 106
|||||||||||||||||| | |||||| ||||||||||| ||||||
Sbjct: 421 gcggctctactccagcctctggaacgccgacgactgggccacgcag 466
>gb|BE455947.3|BE455947 HVSMEg0017N10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0017N10f, mRNA sequence
Length = 801
Score = 97.6 bits (49), Expect = 5e-019
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 39 cgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgactggg 98
|||||||||||||||||||||||||||| ||| | ||||||| |||||| ||||||||||
Sbjct: 619 cgttccccaagagccagccgatgcggctgtacgcgagcctgtggaacgccgacgactggg 678
Query: 99 cgacgcagggcgggcgcgtcaagacggactgg 130
| ||||| || |||| |||||||| ||||||
Sbjct: 679 ccacgcangggcggcgggtcaagaccgactgg 710
>gb|BM370804.2|BM370804 EBro04_SQ002_F05_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ002_F05 5', mRNA sequence
Length = 601
Score = 91.7 bits (46), Expect = 3e-017
Identities = 88/102 (86%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| | ||| ||||| | |||||| | || |||||||||| |||||| ||
Sbjct: 498 gatcagggacttcaggaacatggagggaaaggggatcgccttccccaagaaccagcctat 557
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgac 102
|||||| ||||||||||| | |||||| ||||||||||||||
Sbjct: 558 gcggctgtactccagcctctggaacgccgacgactgggcgac 599
>gb|AL450913.1|AL450913 AL450913 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04P11u 5', mRNA sequence
Length = 638
Score = 89.7 bits (45), Expect = 1e-016
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| ||||||||| | || ||| | ||||||||||||| |||||| ||
Sbjct: 532 gatcagggacttcaagaacctggaggggaangggatcgcgttccccaagaaccagcccat 591
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagg 107
|| ||||||||||| ||| | |||||| ||||||||||| |||||||
Sbjct: 592 gcngctctactccaacctctggaacgccgacgactgggccacgcagg 638
>gb|AL499877.1|AL499877 AL499877 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03O01r 3', mRNA sequence
Length = 497
Score = 87.7 bits (44), Expect = 5e-016
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 64 gctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagac 123
||||||||| ||||||| ||||||||||||||||||||| | ||| ||||| | |||||
Sbjct: 496 gctctactcgagcctgtggaacgcggacgactgggcgactcggggagggcgggagaagac 437
Query: 124 ggactggtcccacgcccccttctccgcctcctaccg 159
|||||||||| | || |||||| ||||||||||||
Sbjct: 436 ggactggtccaaggcgcccttcgtcgcctcctaccg 401
>gb|BI777946.1|BI777946 EBro07_SQ001_H07_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ001_H07 5', mRNA sequence
Length = 285
Score = 87.7 bits (44), Expect = 5e-016
Identities = 77/88 (87%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| ||||||||| | |||||| | ||||||||||||| |||||| ||
Sbjct: 139 gatcagggacttcaagaacctggaggggaaggggatcgcgttccccaagaaccagcccat 198
Query: 61 gcggctctactccagcctgttgaacgcg 88
|||||||||||||||||| | |||||||
Sbjct: 199 gcggctctactccagcctctggaacgcg 226
Score = 75.8 bits (38), Expect = 2e-012
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 116 gtcaagacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgac 175
|||||||| |||||||||||||| || ||||||||||| ||||| || ||||||||||||
Sbjct: 285 gtcaagaccgactggtcccacgcgccgttctccgcctcttaccgtggcttcaaggccgac 226
Query: 176 gc 177
||
Sbjct: 225 gc 224
>gb|AV914498.1|AV914498 AV914498 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6j23 5', mRNA sequence
Length = 612
Score = 87.7 bits (44), Expect = 5e-016
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 64 gctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagac 123
||||||||| ||||||| ||||||||||||||||||||| | ||| ||||| | |||||
Sbjct: 240 gctctactcgagcctgtggaacgcggacgactgggcgactcggggagggcgggagaagac 299
Query: 124 ggactggtcccacgcccccttctccgcctcctaccg 159
|||||||||| | || |||||| ||||||||||||
Sbjct: 300 ggactggtccaaggcgcccttcgtcgcctcctaccg 335
>gb|AV915915.1|AV915915 AV915915 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16j19 5', mRNA sequence
Length = 331
Score = 87.7 bits (44), Expect = 5e-016
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 64 gctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagac 123
||||||||| ||||||| ||||||||||||||||||||| | ||| ||||| | |||||
Sbjct: 147 gctctactcgagcctgtggaacgcggacgactgggcgactcggggagggcgggagaagac 206
Query: 124 ggactggtcccacgcccccttctccgcctcctaccg 159
|||||||||| | || |||||| ||||||||||||
Sbjct: 207 ggactggtccaaggcgcccttcgtcgcctcctaccg 242
>gb|AV919562.1|AV919562 AV919562 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6j23 3', mRNA sequence
Length = 571
Score = 87.7 bits (44), Expect = 5e-016
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 64 gctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagac 123
||||||||| ||||||| ||||||||||||||||||||| | ||| ||||| | |||||
Sbjct: 471 gctctactcgagcctgtggaacgcggacgactgggcgactcggggagggcgggagaagac 412
Query: 124 ggactggtcccacgcccccttctccgcctcctaccg 159
|||||||||| | || |||||| ||||||||||||
Sbjct: 411 ggactggtccaaggcgcccttcgtcgcctcctaccg 376
>gb|AV926405.1|AV926405 AV926405 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19e01 5', mRNA sequence
Length = 566
Score = 87.7 bits (44), Expect = 5e-016
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 64 gctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagac 123
||||||||| ||||||| ||||||||||||||||||||| | ||| ||||| | |||||
Sbjct: 30 gctctactcgagcctgtggaacgcggacgactgggcgactcggggagggcgggagaagac 89
Query: 124 ggactggtcccacgcccccttctccgcctcctaccg 159
|||||||||| | || |||||| ||||||||||||
Sbjct: 90 ggactggtccaaggcgcccttcgtcgcctcctaccg 125
>gb|AV931287.1|AV931287 AV931287 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19e01 3', mRNA sequence
Length = 541
Score = 87.7 bits (44), Expect = 5e-016
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 64 gctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagac 123
||||||||| ||||||| ||||||||||||||||||||| | ||| ||||| | |||||
Sbjct: 512 gctctactcgagcctgtggaacgcggacgactgggcgactcggggagggcgggagaagac 453
Query: 124 ggactggtcccacgcccccttctccgcctcctaccg 159
|||||||||| | || |||||| ||||||||||||
Sbjct: 452 ggactggtccaaggcgcccttcgtcgcctcctaccg 417
>gb|BM816264.1|BM816264 HB01H02_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB01H02_T3.ab1 similar to Glucan
endo-1,6-beta-glucosidase,Cellulase,
Xyloglucan:xyloglucosyl
transferase,Licheninase,Endo-1,3(4)-beta-glucanase,
Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 814
Score = 87.7 bits (44), Expect = 5e-016
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 64 gctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagac 123
||||||||| ||||||| ||||||||||||||||||||| | ||| ||||| | |||||
Sbjct: 650 gctctactcgagcctgtggaacgcggacgactgggcgactcggggagggcgggagaagac 709
Query: 124 ggactggtcccacgcccccttctccgcctcctaccg 159
|||||||||| | || |||||| ||||||||||||
Sbjct: 710 ggactggtccaaggcgcccttcgtcgcctcctaccg 745
>gb|BM816265.1|BM816265 HB02B10_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB02B10_T3.ab1 similar to Glucan
endo-1,6-beta-glucosidase,Cellulase,
Xyloglucan:xyloglucosyl
transferase,Licheninase,Endo-1,3(4)-beta-glucanase,
Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 575
Score = 87.7 bits (44), Expect = 5e-016
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 64 gctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagac 123
||||||||| ||||||| ||||||||||||||||||||| | ||| ||||| | |||||
Sbjct: 38 gctctactcgagcctgtggaacgcggacgactgggcgactcggggagggcgggagaagac 97
Query: 124 ggactggtcccacgcccccttctccgcctcctaccg 159
|||||||||| | || |||||| ||||||||||||
Sbjct: 98 ggactggtccaaggcgcccttcgtcgcctcctaccg 133
>gb|BJ465036.1|BJ465036 BJ465036 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c01 5', mRNA sequence
Length = 505
Score = 87.7 bits (44), Expect = 5e-016
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 64 gctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagac 123
||||||||| ||||||| ||||||||||||||||||||| | ||| ||||| | |||||
Sbjct: 155 gctctactcgagcctgtggaacgcggacgactgggcgactcggggagggcgggagaagac 214
Query: 124 ggactggtcccacgcccccttctccgcctcctaccg 159
|||||||||| | || |||||| ||||||||||||
Sbjct: 215 ggactggtccaaggcgcccttcgtcgcctcctaccg 250
>gb|BJ468104.1|BJ468104 BJ468104 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c01 3', mRNA sequence
Length = 628
Score = 87.7 bits (44), Expect = 5e-016
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 64 gctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagac 123
||||||||| ||||||| ||||||||||||||||||||| | ||| ||||| | |||||
Sbjct: 524 gctctactcgagcctgtggaacgcggacgactgggcgactcggggagggcgggagaagac 465
Query: 124 ggactggtcccacgcccccttctccgcctcctaccg 159
|||||||||| | || |||||| ||||||||||||
Sbjct: 464 ggactggtccaaggcgcccttcgtcgcctcctaccg 429
>gb|BQ471752.1|BQ471752 HV03F21r HV Hordeum vulgare subsp. vulgare cDNA clone HV03F21
5-PRIME, mRNA sequence
Length = 502
Score = 87.7 bits (44), Expect = 5e-016
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 64 gctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagac 123
||||||||| ||||||| ||||||||||||||||||||| | ||| ||||| | |||||
Sbjct: 342 gctctactcgagcctgtggaacgcggacgactgggcgactcggggagggcgggagaagac 401
Query: 124 ggactggtcccacgcccccttctccgcctcctaccg 159
|||||||||| | || |||||| ||||||||||||
Sbjct: 402 ggactggtccaaggcgcccttcgtcgcctcctaccg 437
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 128,334
Number of Sequences: 312970
Number of extensions: 128334
Number of successful extensions: 46856
Number of sequences better than 0.5: 178
Number of HSP's better than 0.5 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46492
Number of HSP's gapped (non-prelim): 351
length of query: 800
length of database: 175,134,539
effective HSP length: 19
effective length of query: 781
effective length of database: 169,188,109
effective search space: 132135913129
effective search space used: 132135913129
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)